Citrus Sinensis ID: 020548
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGU9 | 441 | Methionine gamma-lyase OS | yes | no | 0.975 | 0.716 | 0.781 | 1e-144 | |
| P13254 | 398 | Methionine gamma-lyase OS | yes | no | 0.925 | 0.753 | 0.371 | 2e-39 | |
| O05394 | 379 | Cystathionine gamma-lyase | yes | no | 0.876 | 0.749 | 0.343 | 7e-38 | |
| Q83A83 | 387 | Cystathionine beta-lyase | yes | no | 0.904 | 0.757 | 0.312 | 4e-37 | |
| A2RM21 | 380 | Cystathionine beta-lyase | yes | no | 0.910 | 0.776 | 0.315 | 2e-35 | |
| P0A4K2 | 380 | Cystathionine beta-lyase | yes | no | 0.910 | 0.776 | 0.315 | 2e-35 | |
| Q1M0P5 | 380 | Cystathionine gamma-synth | yes | no | 0.858 | 0.731 | 0.331 | 1e-34 | |
| P55217 | 563 | Cystathionine gamma-synth | no | no | 0.876 | 0.504 | 0.317 | 2e-34 | |
| O31632 | 390 | Cystathionine beta-lyase | no | no | 0.929 | 0.771 | 0.321 | 4e-34 | |
| P56069 | 380 | Cystathionine gamma-synth | yes | no | 0.858 | 0.731 | 0.327 | 7e-34 |
| >sp|Q9SGU9|MGL_ARATH Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1 | Back alignment and function desciption |
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Score = 510 bits (1314), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/316 (78%), Positives = 282/316 (89%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH V +AIV
Sbjct: 126 MSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAIV 185
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADVVVHS
Sbjct: 186 EGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADVVVHS 245
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCG NLV MMDL G+LMLLGPTMN KVAFELSERIPHLGLRM
Sbjct: 246 ISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLRM 305
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETEEKAN
Sbjct: 306 REHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKAN 365
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
+LM YLQN QFGFMAVSLGYYETLMSCSGSSTSSEL+ +K AGIS GLVRMSVGY+G
Sbjct: 366 KLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYVG 425
Query: 301 TLDQRWSQFEKALSRM 316
TL+Q+W+QFEKA RM
Sbjct: 426 TLEQKWTQFEKAFLRM 441
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Catalyzes the degradation of L-methionine to alpha-ketobutyrate, methanethiol and ammonia. Exhibits a high activity toward L-methionine, L-ethionine, L-homocysteine and seleno-L-methionine, but not L-cysteine. Involved in an alternative cysteine biosynthesis pathway to the reverse trans-sulfuration pathway (methionine->homocysteine->cystathionine->cysteine) in which methanethiol is an intermediate. Mediates also an alternative isoleucine biosynthesis pathway in which 2-ketobutyrate is an intermediate. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|P13254|MEGL_PSEPU Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | Back alignment and function description |
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Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 172/318 (54%), Gaps = 18/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S L L G V+ TLYG T A L H + VD++D + + +A+
Sbjct: 90 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAMT 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P LGAD+VVH
Sbjct: 149 PA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVH 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++SG DI AG V G LV+ + QG + G ++P A L I L LR
Sbjct: 208 SATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 180 MKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
M HC A + A R ++ L + YPGL P + L + ++ GG++ +++
Sbjct: 266 MDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP---GGMIAFELKGG 321
Query: 237 EKA-NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
A R MN LQ +++ AVSLG E+L S T S EE+A GIS GLVR+S
Sbjct: 322 IGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLS 377
Query: 296 VGYLGTLDQRWSQFEKAL 313
VG L +D + ++AL
Sbjct: 378 VG-LEDIDDLLADVQQAL 394
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Pseudomonas putida (taxid: 303) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | Back alignment and function description |
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Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 167/300 (55%), Gaps = 16/300 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI++V+M L +SG HVV +YGGT+ ++T R I +TFVD S E V AI
Sbjct: 75 MAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVLNR-LGIESTFVDTSSREEVEKAI- 131
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK +Y E+ +NP L + ++ ++ +A GV ++VDNTF +P P LGAD+V+H
Sbjct: 132 RPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLH 191
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G +D++ G V + + + Q + G + P+ ++ L I LGLR
Sbjct: 192 SATKYLGGHSDVVGGLVVTASKELGEELHFVQNS---TGGVLGPQDSWLLMRGIKTLGLR 248
Query: 180 MKEHCHRALIFARRMKK-LGLKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ A A ++ ++ L YPG +HP HEL K+ GFGG++ D+ +EE
Sbjct: 249 MEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGA---GFGGMISFDIGSEE 305
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ + + L+ + +A SLG E+L+S T + + E + GI+ GL+R+SVG
Sbjct: 306 RVDAFLGNLKLFT----IAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVG 361
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Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q83A83|METC_COXBU Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | Back alignment and function description |
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Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 14/307 (4%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG 62
A ++ +++L G HVV +YGG++ L + R+ ++ +FVD +D V A V
Sbjct: 84 AATATILELLQPGDHVVVMDDVYGGSYRLFENVRKRSAGLSFSFVDFTDENKVREA-VTA 142
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSI 121
+TK+L+ ES SNP L + ++ +++ +A +K + V DNTF +P++ P LG D+V HS
Sbjct: 143 KTKMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSA 202
Query: 122 SKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
+K+++G +DII G AV G + + Q A +G P +F + + L +RM
Sbjct: 203 TKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNA---IGAIAAPFDSFMVLRGLKTLAIRM 259
Query: 181 KEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 238
+ HC A+ A+ ++K +V YPGL HP H + K FGG++ ++++ +
Sbjct: 260 ERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRY---FGGMISVELKCD-- 314
Query: 239 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298
N L+ Q +A SLG E+L+ T + + E+ GI+ G +R+SVG
Sbjct: 315 LNETKKVLER-CQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGI 373
Query: 299 LGTLDQR 305
D R
Sbjct: 374 EAITDLR 380
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Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | Back alignment and function description |
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Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 168/311 (54%), Gaps = 16/311 (5%)
Query: 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 67
++ L S+G H++ A +YGGT L+ + I VD+S+ + + +A + TK +
Sbjct: 82 VLSLFSAGDHIILADDVYGGTFRLMDKVLTK-TGIIYDLVDLSNLDDLKAAFKE-ETKAI 139
Query: 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFIS 126
YFE+ SNP L V +I E+S +A +VDNTF +P + P LGAD+V+HS +K++
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199
Query: 127 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 186
G +D++AG V + + S + Q + +G + P+ ++ + I L LRM+ H
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNS---IGAVLGPQDSWLVQRGIKTLALRMEAHSAN 256
Query: 187 ALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 244
A A ++ K KV YPGL HP HE+ K + FGG++ ++ E N + +
Sbjct: 257 AQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMS---AFGGMISFELTDE---NAVKD 310
Query: 245 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304
+++N + F +A SLG E+L+ T + + E + GI GL+R+SVG + ++
Sbjct: 311 FVENLSYFT-LAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVG-VEAIED 368
Query: 305 RWSQFEKALSR 315
+ ++AL +
Sbjct: 369 LLTDIKEALEK 379
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The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | Back alignment and function description |
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Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 168/311 (54%), Gaps = 16/311 (5%)
Query: 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 67
++ L S+G H++ A +YGGT L+ + I VD+S+ + + +A + TK +
Sbjct: 82 VLSLFSAGDHIILADDVYGGTFRLMDKVLTK-TGIIYDLVDLSNLDDLKAAFKE-ETKAI 139
Query: 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFIS 126
YFE+ SNP L V +I E+S +A +VDNTF +P + P LGAD+V+HS +K++
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199
Query: 127 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 186
G +D++AG V + + S + Q + +G + P+ ++ + I L LRM+ H
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNS---IGAVLGPQDSWLVQRGIKTLALRMEAHSAN 256
Query: 187 ALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 244
A A ++ K KV YPGL HP HE+ K + FGG++ ++ E N + +
Sbjct: 257 AQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMS---AFGGMISFELTDE---NAVKD 310
Query: 245 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304
+++N + F +A SLG E+L+ T + + E + GI GL+R+SVG + ++
Sbjct: 311 FVENLSYFT-LAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVG-VEAIED 368
Query: 305 RWSQFEKALSR 315
+ ++AL +
Sbjct: 369 LLTDIKEALEK 379
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The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 153/293 (52%), Gaps = 15/293 (5%)
Query: 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 67
+ L SG HV+ +YGGT L + ++ T +D SD + AI + TK L
Sbjct: 81 VFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKN-GLSCTIIDTSDLSQIKKAI-KPNTKAL 138
Query: 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFIS 126
Y E+ SNP L + ++ + + +A D G+ +VDNTF +P +P LGAD+VVHS +K++
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198
Query: 127 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 186
G +D++AG V + + Q A +G + P+ ++ L I LGLRM+ H
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDSWLLQRGIKTLGLRMQAHQKN 255
Query: 187 ALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 244
AL A ++K +V YPGL HP++EL K GF G+L ++ + +A +
Sbjct: 256 ALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMR---GFSGMLSFTLKNDSEATPFVE 312
Query: 245 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
L+ + + SLG E+L+ T + + ++ AGI GLVR+SVG
Sbjct: 313 SLKLF----ILGESLGGVESLVGVPAFMTHACIPKTQREAAGIRDGLVRLSVG 361
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Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Helicobacter pylori (taxid: 210) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 159/302 (52%), Gaps = 18/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M A + +L+ L +GGH+V Y T + +F P+ IT T +D +D + +A+
Sbjct: 257 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPK-LGITVTVIDPADIAGLEAAVN 315
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ + + + ES +NP L +I +S++ H +G V +D TF +PL LGAD+VVH
Sbjct: 316 EFKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVH 375
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I G D++AG +CG LV+ + +LH +LG T+NP A+ + + L LR
Sbjct: 376 SATKYIGGHNDVLAGCICGSLKLVSEIRNLHH----VLGGTLNPNAAYLIIRGMKTLHLR 431
Query: 180 MKEHCHRALIFARRMK---KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
+++ A A ++ K+ V YPGL HP HEL K GFGG++ +++ +
Sbjct: 432 VQQQNSTAFRMAEILEAHPKVS-HVYYPGLPSHPEHELAKRQMT---GFGGVVSFEIDGD 487
Query: 237 -EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
E + ++ L + ++A S G E+++ + +L EE+ GI LVR S
Sbjct: 488 IETTIKFVDSL----KIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFS 543
Query: 296 VG 297
G
Sbjct: 544 FG 545
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Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 19/320 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ + L S G HV+ +YGGT ++T R I TFVD++D V +I
Sbjct: 80 MAAISTAFL-LLSQGDHVLVTEDVYGGTFRMVTEVLTR-FGIEHTFVDMTDRNEVARSI- 136
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ SNPTL + +I + +LA + G +DNTF +P + P LG D+V+H
Sbjct: 137 KPNTKVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLH 196
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +KF+SG +D+++G A L + L G + + + + + L +
Sbjct: 197 SATKFLSGHSDVLSGLAAVKDEELGKQLYKLQNA----FGAVLGVQDCWLVLRGLKTLQV 252
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
R+++ A A +K +V YPGL DHP E KS + G G +L ++E++
Sbjct: 253 RLEKASQTAQRLAEFFQKHPAVKRVYYPGLADHPGAETHKSQST---GAGAVLSFELESK 309
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
E +L+ + AVSLG E+++S + + + + EE+ GI+ GL+R+SV
Sbjct: 310 EAVKKLVENV----SLPVFAVSLGAVESILSYPATMSHAAMPKEEREKRGITDGLLRLSV 365
Query: 297 GYLGTLDQRWSQFEKALSRM 316
G + D FE+AL +
Sbjct: 366 G-VEHADDLEHDFEQALKEI 384
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Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 15/293 (5%)
Query: 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 67
+ L SG HV+ +YGGT L + ++ T +D SD + AI + TK L
Sbjct: 81 VFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKN-GLSCTIIDTSDISQIKKAI-KPNTKAL 138
Query: 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFIS 126
Y E+ SNP L + ++ + + +A D G+ +VDNTF +P +P LGAD+V HS +K++
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLG 198
Query: 127 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 186
G +D++AG V + + Q A +G + P+ ++ L I LGLRM+ H
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDSWLLQRGIKTLGLRMEAHQKN 255
Query: 187 ALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 244
AL A ++K +V YPGL HP++EL K GF G+L ++ + +A +
Sbjct: 256 ALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMR---GFSGMLSFTLKNDSEAVAFVE 312
Query: 245 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
L+ + + SLG E+L+ T + + ++ AGI GLVR+SVG
Sbjct: 313 SLKLF----ILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVG 361
|
Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| 224057996 | 454 | predicted protein [Populus trichocarpa] | 1.0 | 0.713 | 0.870 | 1e-163 | |
| 255555749 | 449 | cystathionine gamma-synthase, putative [ | 0.981 | 0.708 | 0.861 | 1e-160 | |
| 225426590 | 438 | PREDICTED: methionine gamma-lyase [Vitis | 0.978 | 0.723 | 0.848 | 1e-154 | |
| 356502410 | 440 | PREDICTED: methionine gamma-lyase-like [ | 0.981 | 0.722 | 0.798 | 1e-145 | |
| 356547511 | 440 | PREDICTED: methionine gamma-lyase-like [ | 0.981 | 0.722 | 0.805 | 1e-144 | |
| 451811145 | 449 | methionine gamma-lyase [Cucumis melo] | 0.990 | 0.714 | 0.791 | 1e-144 | |
| 307136088 | 417 | cystathionine gamma-synthase [Cucumis me | 0.990 | 0.769 | 0.791 | 1e-144 | |
| 356535270 | 442 | PREDICTED: methionine gamma-lyase-like [ | 0.996 | 0.730 | 0.783 | 1e-143 | |
| 449456795 | 450 | PREDICTED: methionine gamma-lyase-like [ | 0.990 | 0.713 | 0.788 | 1e-143 | |
| 15217709 | 441 | methionine gamma-lyase [Arabidopsis thal | 0.975 | 0.716 | 0.781 | 1e-142 |
| >gi|224057996|ref|XP_002299428.1| predicted protein [Populus trichocarpa] gi|222846686|gb|EEE84233.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/324 (87%), Positives = 308/324 (95%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAISSVL+QLCSSGGH+VA+RTLYGGTHALLTHF PRACNITTTFVDI+DHEMV +A+V
Sbjct: 131 MSAISSVLLQLCSSGGHMVASRTLYGGTHALLTHFLPRACNITTTFVDINDHEMVKNAMV 190
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+TKVLYFESISNPTL VANIPELSR+AHDKG TVVVDNTFSP+VLSPARLGADVVVHS
Sbjct: 191 EGQTKVLYFESISNPTLTVANIPELSRIAHDKGATVVVDNTFSPMVLSPARLGADVVVHS 250
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGPANLVNSMMDL GALMLLGPTMN KVAFELSERIPHLGLRM
Sbjct: 251 ISKFISGGADIIAGAVCGPANLVNSMMDLQHGALMLLGPTMNAKVAFELSERIPHLGLRM 310
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHCHRA+++A ++KKLGL V+YPGLEDHP HELLKSMANKEYGFGGLLC+DMETEEKAN
Sbjct: 311 KEHCHRAMVYATKIKKLGLNVIYPGLEDHPQHELLKSMANKEYGFGGLLCIDMETEEKAN 370
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
RLMN+LQN QFGFMAVSLGYYETLMSCSGSSTSSELN EE+ALAGIS GLVR+SVG++G
Sbjct: 371 RLMNHLQNCTQFGFMAVSLGYYETLMSCSGSSTSSELNDEEQALAGISPGLVRISVGFVG 430
Query: 301 TLDQRWSQFEKALSRMQDSGVFKN 324
TL Q+WSQFEKA SR+QDSG++KN
Sbjct: 431 TLAQKWSQFEKAFSRLQDSGLYKN 454
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555749|ref|XP_002518910.1| cystathionine gamma-synthase, putative [Ricinus communis] gi|223541897|gb|EEF43443.1| cystathionine gamma-synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/318 (86%), Positives = 303/318 (95%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAISSV +QLCSSGGHVVA+RTLYGGTHALL+HF PRACNITTTFV+I D EMV +AIV
Sbjct: 130 MSAISSVFLQLCSSGGHVVASRTLYGGTHALLSHFLPRACNITTTFVEIGDIEMVKNAIV 189
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+TKV YFESI+NPTL VANIPELSR+AHDKGVTVVVDNTF+P+V+SPARLGADVVVHS
Sbjct: 190 EGKTKVFYFESIANPTLTVANIPELSRIAHDKGVTVVVDNTFAPMVISPARLGADVVVHS 249
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
I+KFISGGADIIAGAVCGPA+LVNSMMDLHQGA+MLLGPTMN KVAF+LS RIPHLGLRM
Sbjct: 250 ITKFISGGADIIAGAVCGPASLVNSMMDLHQGAIMLLGPTMNAKVAFDLSGRIPHLGLRM 309
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHCHRA+++A RMKKLGLKV+YPGLEDHPHH+LLKSMANK+YGFG LLCLDMETEEKAN
Sbjct: 310 KEHCHRAMVYATRMKKLGLKVIYPGLEDHPHHQLLKSMANKDYGFGALLCLDMETEEKAN 369
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
RL+N+LQNY QFGFMAVSLGYYETLMS SGSSTSSELNAEEK LAGIS GL+RMSVGYLG
Sbjct: 370 RLLNHLQNYTQFGFMAVSLGYYETLMSVSGSSTSSELNAEEKKLAGISPGLIRMSVGYLG 429
Query: 301 TLDQRWSQFEKALSRMQD 318
TL+Q+WSQFEKALSRM++
Sbjct: 430 TLEQKWSQFEKALSRMKE 447
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426590|ref|XP_002280162.1| PREDICTED: methionine gamma-lyase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/317 (84%), Positives = 295/317 (93%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAIS+ L+QLCSSG H+VA+RTLYGGTHALLTHFFPR CNITT+FVDI D +MV+ AI+
Sbjct: 121 MSAISAALLQLCSSGDHIVASRTLYGGTHALLTHFFPRTCNITTSFVDIKDLDMVDGAII 180
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+GRTKVLYFE+I+NP L+VAN+PEL R+AHDKG+TVVVDNTF+P+V+SPA+LGADVVVHS
Sbjct: 181 EGRTKVLYFEAIANPVLSVANVPELCRVAHDKGLTVVVDNTFAPMVMSPAKLGADVVVHS 240
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGPA LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM
Sbjct: 241 ISKFISGGADIIAGAVCGPAKLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 300
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHC RAL +A RMKKLGLKV+YPGLE HP H +LKS+AN +YGFGGLLCLDM TEEKAN
Sbjct: 301 KEHCRRALEYATRMKKLGLKVIYPGLEGHPDHTVLKSIANLDYGFGGLLCLDMGTEEKAN 360
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
RLMN LQN QFGFMAVSLGYYETLMSCSGSSTSSE+NAEEKALAGIS GLVRMSVGY G
Sbjct: 361 RLMNLLQNSTQFGFMAVSLGYYETLMSCSGSSTSSEMNAEEKALAGISPGLVRMSVGYSG 420
Query: 301 TLDQRWSQFEKALSRMQ 317
TL+QRWSQFEKALSRMQ
Sbjct: 421 TLEQRWSQFEKALSRMQ 437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502410|ref|XP_003520012.1| PREDICTED: methionine gamma-lyase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 254/318 (79%), Positives = 288/318 (90%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AISSVL+QLCS+GGHVVA+ TLYGGTHALLTHF P CNITTTFVDI+D E V SAIV
Sbjct: 118 MAAISSVLLQLCSTGGHVVASTTLYGGTHALLTHFLPGKCNITTTFVDIADLESVESAIV 177
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+T VLYFES++NP+L VA+IPEL R+ H KGVTVVVDNTF+P+V+SPARLGADVVVHS
Sbjct: 178 EGKTNVLYFESMANPSLKVADIPELCRVGHAKGVTVVVDNTFAPMVISPARLGADVVVHS 237
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGPA+LVNSMMDLH G+LMLLGPTMN KVAFELSERIPHL LRM
Sbjct: 238 ISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLSLRM 297
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHCHRAL+FA R+KKLGLKV+YPGLEDHP H+LLKS+AN+EYG+GGLLC+DM T E+AN
Sbjct: 298 KEHCHRALVFATRLKKLGLKVIYPGLEDHPQHKLLKSIANREYGYGGLLCIDMGTVERAN 357
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
LM +LQN AQFGFMAVSLGYYETLMSCSGSSTSSE+ EE+ LAGIS GLVRMS+GY+G
Sbjct: 358 LLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSEMTEEEQKLAGISPGLVRMSIGYIG 417
Query: 301 TLDQRWSQFEKALSRMQD 318
TL+Q+WSQ E AL R Q+
Sbjct: 418 TLEQKWSQMEMALERFQE 435
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547511|ref|XP_003542155.1| PREDICTED: methionine gamma-lyase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/318 (80%), Positives = 287/318 (90%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AISSVL+QLCSSGGHVVA+ TLYGGTHALLTHF P CNI+TTFVDISD E V SAIV
Sbjct: 118 MAAISSVLLQLCSSGGHVVASTTLYGGTHALLTHFLPGKCNISTTFVDISDLESVESAIV 177
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+T VLYFES++NP+L VANIPEL R+ H KGVTVV DNTF+P+V+SPARLGADVVVHS
Sbjct: 178 EGKTNVLYFESMANPSLKVANIPELCRVGHAKGVTVVTDNTFAPMVISPARLGADVVVHS 237
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGPA+LVNSMMDLH G+LMLLGPTMN KVAFELSERIPHL LRM
Sbjct: 238 ISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLSLRM 297
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHCHRAL+FA R+KKLGLKV+YPGLEDHP HELLKS+AN+EYG+GGLLC+DMET E+AN
Sbjct: 298 KEHCHRALVFATRLKKLGLKVIYPGLEDHPQHELLKSIANREYGYGGLLCIDMETVERAN 357
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
LM +LQN AQFGFMAVSLGYYETLMSCSGSSTSS + EE+ LAGIS GLVRMS+GY+G
Sbjct: 358 LLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSGMTEEEQKLAGISPGLVRMSIGYIG 417
Query: 301 TLDQRWSQFEKALSRMQD 318
TL+Q+WSQ E AL R Q+
Sbjct: 418 TLEQKWSQMEIALDRFQE 435
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451811145|gb|AGF70153.1| methionine gamma-lyase [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/321 (79%), Positives = 290/321 (90%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI++VL+QL +SG HVVA+RTLYGGTHAL+ HFFPR NITTTFVDI D + V AIV
Sbjct: 124 MSAIAAVLLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIV 183
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+TKVLYFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHS
Sbjct: 184 EGKTKVLYFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHS 243
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGP LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRM
Sbjct: 244 ISKFISGGADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRM 303
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHC RA +FA RMKK GLKV+YPGLEDHP H+L+KS+AN EYGFGG+LC+DM TEE+AN
Sbjct: 304 KEHCRRASVFAERMKKAGLKVIYPGLEDHPQHQLMKSLANPEYGFGGMLCVDMGTEERAN 363
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
+LM+ LQN QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+G
Sbjct: 364 KLMSILQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMG 423
Query: 301 TLDQRWSQFEKALSRMQDSGV 321
TL+Q+WSQFEKAL+++QD GV
Sbjct: 424 TLEQKWSQFEKALAKVQDIGV 444
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136088|gb|ADN33936.1| cystathionine gamma-synthase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/321 (79%), Positives = 290/321 (90%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI++VL+QL +SG HVVA+RTLYGGTHAL+ HFFPR NITTTFVDI D + V AIV
Sbjct: 92 MSAIAAVLLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIV 151
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+TKVLYFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHS
Sbjct: 152 EGKTKVLYFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHS 211
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGP LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRM
Sbjct: 212 ISKFISGGADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRM 271
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHC RA +FA RMKK GLKV+YPGLEDHP H+L+KS+AN EYGFGG+LC+DM TEE+AN
Sbjct: 272 KEHCRRASVFAERMKKAGLKVIYPGLEDHPQHQLMKSLANPEYGFGGMLCVDMGTEERAN 331
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
+LM+ LQN QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+G
Sbjct: 332 KLMSILQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMG 391
Query: 301 TLDQRWSQFEKALSRMQDSGV 321
TL+Q+WSQFEKAL+++QD GV
Sbjct: 392 TLEQKWSQFEKALAKVQDIGV 412
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535270|ref|XP_003536171.1| PREDICTED: methionine gamma-lyase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/323 (78%), Positives = 296/323 (91%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAIS+VL+QLCS G HVVA+RTLYGGTHALL+HF PR C I+T+FV+++D +MV++AIV
Sbjct: 118 MSAISAVLLQLCSHGEHVVASRTLYGGTHALLSHFLPRTCGISTSFVEVTDLDMVDAAIV 177
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+TKVLYFES+SNPTL VANIPEL +AH KGVTVVVDNTF+P+VLSPARLGADVVVHS
Sbjct: 178 EGKTKVLYFESVSNPTLTVANIPELCHMAHRKGVTVVVDNTFAPMVLSPARLGADVVVHS 237
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGPA LVN+MMDL QG+LMLLGPTMN KVAFELSERIPHLGLRM
Sbjct: 238 ISKFISGGADIIAGAVCGPARLVNAMMDLQQGSLMLLGPTMNAKVAFELSERIPHLGLRM 297
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEH +RAL FA R+K+LG++V+YPGLE+HP H+LLKSM NK+YG+GGL+C+DMETEE+AN
Sbjct: 298 KEHSNRALEFATRLKRLGMRVIYPGLEEHPQHQLLKSMHNKDYGYGGLMCVDMETEERAN 357
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
R M++LQNY QFGFMAVSLGYYETLMSCSGSSTSSEL+ EEK LAGIS GLVRMS+GY+G
Sbjct: 358 RFMSHLQNYGQFGFMAVSLGYYETLMSCSGSSTSSELSTEEKELAGISPGLVRMSIGYIG 417
Query: 301 TLDQRWSQFEKALSRMQDSGVFK 323
TL+Q+WSQ +KAL+R+ DSG K
Sbjct: 418 TLEQKWSQLQKALTRLNDSGYNK 440
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456795|ref|XP_004146134.1| PREDICTED: methionine gamma-lyase-like [Cucumis sativus] gi|449527859|ref|XP_004170926.1| PREDICTED: methionine gamma-lyase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/321 (78%), Positives = 290/321 (90%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI++VL+QL +SG HVVA+RTLYGGTHAL+ HFFPR NITTTFVDI D + V AIV
Sbjct: 125 MSAIAAVLLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIV 184
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+G+TKVLYFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHS
Sbjct: 185 EGKTKVLYFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHS 244
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGP LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRM
Sbjct: 245 ISKFISGGADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRM 304
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHC RA +FA RMKK GLKV+YPGL DHP H+L+KS+A+ EYGFGG+LC+DM TEEKAN
Sbjct: 305 KEHCRRASVFAERMKKAGLKVVYPGLPDHPQHQLMKSLASPEYGFGGMLCVDMGTEEKAN 364
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
+LM+ LQN QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+G
Sbjct: 365 KLMSILQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMG 424
Query: 301 TLDQRWSQFEKALSRMQDSGV 321
TL+Q+WSQFEKAL+++QD+GV
Sbjct: 425 TLEQKWSQFEKALAKVQDNGV 445
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217709|ref|NP_176647.1| methionine gamma-lyase [Arabidopsis thaliana] gi|75205145|sp|Q9SGU9.1|MGL_ARATH RecName: Full=Methionine gamma-lyase; Short=AtMGL; AltName: Full=L-methioninase gi|6633821|gb|AAF19680.1|AC009519_14 F1N19.23 [Arabidopsis thaliana] gi|16226491|gb|AAL16181.1|AF428413_1 At1g64660/F1N19_22 [Arabidopsis thaliana] gi|15450932|gb|AAK96737.1| similar to O-succinylhomoserine sulfhydrylase [Arabidopsis thaliana] gi|30387533|gb|AAP31932.1| At1g64660 [Arabidopsis thaliana] gi|110740851|dbj|BAE98522.1| similar to O-succinylhomoserine sulfhydrylase [Arabidopsis thaliana] gi|332196150|gb|AEE34271.1| methionine gamma-lyase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/316 (78%), Positives = 282/316 (89%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH V +AIV
Sbjct: 126 MSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAIV 185
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADVVVHS
Sbjct: 186 EGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADVVVHS 245
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCG NLV MMDL G+LMLLGPTMN KVAFELSERIPHLGLRM
Sbjct: 246 ISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLRM 305
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETEEKAN
Sbjct: 306 REHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKAN 365
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
+LM YLQN QFGFMAVSLGYYETLMSCSGSSTSSEL+ +K AGIS GLVRMSVGY+G
Sbjct: 366 KLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYVG 425
Query: 301 TLDQRWSQFEKALSRM 316
TL+Q+W+QFEKA RM
Sbjct: 426 TLEQKWTQFEKAFLRM 441
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| TAIR|locus:2019449 | 441 | MGL "AT1G64660" [Arabidopsis t | 0.975 | 0.716 | 0.753 | 3.6e-128 | |
| UNIPROTKB|Q81LL6 | 377 | BAS4268 "Cys/Met metabolism PL | 0.873 | 0.750 | 0.365 | 5.9e-41 | |
| TIGR_CMR|BA_4600 | 377 | BA_4600 "cystathionine beta-ly | 0.873 | 0.750 | 0.365 | 5.9e-41 | |
| TIGR_CMR|CPS_1705 | 413 | CPS_1705 "methionine gamma-lya | 0.941 | 0.738 | 0.306 | 4.8e-39 | |
| TIGR_CMR|CBU_2025 | 387 | CBU_2025 "cystathionine beta-l | 0.925 | 0.775 | 0.311 | 3e-37 | |
| TIGR_CMR|SPO_A0318 | 400 | SPO_A0318 "methionine gamma-ly | 0.876 | 0.71 | 0.353 | 3e-37 | |
| UNIPROTKB|Q8EG02 | 397 | mdeA "Methionine gamma-lyase M | 0.935 | 0.763 | 0.331 | 1.7e-36 | |
| TIGR_CMR|SO_1812 | 397 | SO_1812 "methionine gamma-lyas | 0.935 | 0.763 | 0.331 | 1.7e-36 | |
| UNIPROTKB|Q4KA19 | 424 | mdeA "Methionine gamma-lyase" | 0.941 | 0.719 | 0.325 | 5.7e-36 | |
| TIGR_CMR|GSU_0945 | 378 | GSU_0945 "cystathionine beta-l | 0.922 | 0.791 | 0.336 | 6.5e-35 |
| TAIR|locus:2019449 MGL "AT1G64660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
Identities = 238/316 (75%), Positives = 273/316 (86%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH V +AIV
Sbjct: 126 MSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAIV 185
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADVVVHS
Sbjct: 186 EGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADVVVHS 245
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCG NLV MMDL G+LMLLGPTMN KVAFELSERIPHLGLRM
Sbjct: 246 ISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLRM 305
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETEEKAN
Sbjct: 306 REHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKAN 365
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLG 300
+LM YLQN QFGFMAVSLGYYETLM EL+ +K AGIS GLVRMSVGY+G
Sbjct: 366 KLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYVG 425
Query: 301 TLDQRWSQFEKALSRM 316
TL+Q+W+QFEKA RM
Sbjct: 426 TLEQKWTQFEKAFLRM 441
|
|
| UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 110/301 (36%), Positives = 169/301 (56%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI++ +M L S G HV+ +YGGT+ ++T R I TFVD ++ E V AI
Sbjct: 75 MAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRF-GIEHTFVDTTNLEEVEEAI- 131
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK +Y E+ +NP L + +I ++S LA +KG+ ++DNTF +P SP LGAD+V+H
Sbjct: 132 RPNTKAIYVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLH 191
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G +D++AG V N DLH G + P+ +F L + LG+R
Sbjct: 192 SATKYLGGHSDVVAGLVV--VNSPQLAEDLHF-VQNSTGGILGPQDSFLLLRGLKTLGIR 248
Query: 180 MKEH--CHRALI-FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
M+EH RA+ F K+ KV YPGL H +HEL AN GFG ++ D+++E
Sbjct: 249 MEEHETNSRAIAEFLNNHPKVN-KVYYPGLASHQNHELATEQAN---GFGAIISFDVDSE 304
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
E N+++ LQ + +A SLG E+L+ + A+ + GI+ L+R+SV
Sbjct: 305 ETLNKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDTLIRISV 360
Query: 297 G 297
G
Sbjct: 361 G 361
|
|
| TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 110/301 (36%), Positives = 169/301 (56%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI++ +M L S G HV+ +YGGT+ ++T R I TFVD ++ E V AI
Sbjct: 75 MAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRF-GIEHTFVDTTNLEEVEEAI- 131
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK +Y E+ +NP L + +I ++S LA +KG+ ++DNTF +P SP LGAD+V+H
Sbjct: 132 RPNTKAIYVETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLH 191
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G +D++AG V N DLH G + P+ +F L + LG+R
Sbjct: 192 SATKYLGGHSDVVAGLVV--VNSPQLAEDLHF-VQNSTGGILGPQDSFLLLRGLKTLGIR 248
Query: 180 MKEH--CHRALI-FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
M+EH RA+ F K+ KV YPGL H +HEL AN GFG ++ D+++E
Sbjct: 249 MEEHETNSRAIAEFLNNHPKVN-KVYYPGLASHQNHELATEQAN---GFGAIISFDVDSE 304
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
E N+++ LQ + +A SLG E+L+ + A+ + GI+ L+R+SV
Sbjct: 305 ETLNKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDTLIRISV 360
Query: 297 G 297
G
Sbjct: 361 G 361
|
|
| TIGR_CMR|CPS_1705 CPS_1705 "methionine gamma-lyase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 98/320 (30%), Positives = 180/320 (56%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+S+ L+ +G H+++++ +YG + AL+ H + NI TFVD+++ + + +AI
Sbjct: 89 MAAVSAALLTNLQAGDHMISSKAVYGCSFALMNHMLKKF-NIEVTFVDMTEPDNIKAAIK 147
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK+++ E+ NP L V ++ ++ +A + +VDNTF +P++ PA+ GAD+VVH
Sbjct: 148 EN-TKLVFLETPINPNLVVLDLEKICAIAKAHNLLSIVDNTFLTPVLQQPAKFGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+++G D++AG VC ++N ++ L +G T++P A+ + + L +R
Sbjct: 207 SATKYLNGHGDVVAGVVCANFEMIN---EIKMTTLKDIGATISPHDAWLIMRGLKTLPIR 263
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M HC A A +++ + +V YPGL+ H + K + N+ GG++ ++ T+
Sbjct: 264 MDRHCSNAQTVAEFLEQHPMVDEVYYPGLKSHSGN---KFVGNQMKAAGGVIAFELNTDL 320
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 297
+ ++ F +AVSLG E+L+ EE+A AGIS L+R+SVG
Sbjct: 321 TGGK--TFIDAMELFS-IAVSLGDAESLIQHPASMTHSPYTPEERADAGISDSLIRISVG 377
Query: 298 YLGTLDQRWSQFEKALSRMQ 317
L +D S +AL +++
Sbjct: 378 -LENVDDIISDLTQALEKVK 396
|
|
| TIGR_CMR|CBU_2025 CBU_2025 "cystathionine beta-lyase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 98/315 (31%), Positives = 164/315 (52%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG 62
A ++ +++L G HVV +YGG++ L + R+ ++ +FVD +D V A+
Sbjct: 84 AATATILELLQPGDHVVVMDDVYGGSYRLFENVRKRSAGLSFSFVDFTDENKVREAVT-A 142
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSI 121
+TK+L+ ES SNP L + ++ +++ +A +K + V DNTF+ P++ P LG D+V HS
Sbjct: 143 KTKMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSA 202
Query: 122 SKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
+K+++G +DII G AV G + + Q A+ G P +F + + L +RM
Sbjct: 203 TKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAI---GAIAAPFDSFMVLRGLKTLAIRM 259
Query: 181 KEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 238
+ HC A+ A+ ++K +V YPGL HP H + K Y FGG++ ++++ +
Sbjct: 260 ERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMR--Y-FGGMISVELKCD-- 314
Query: 239 ANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGY 298
N L+ Q +A SLG E+L+ + E+ GI+ G +R+SVG
Sbjct: 315 LNETKKVLER-CQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGI 373
Query: 299 LGTLDQRWSQFEKAL 313
D R E AL
Sbjct: 374 EAITDLR-HDLEAAL 387
|
|
| TIGR_CMR|SPO_A0318 SPO_A0318 "methionine gamma-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 107/303 (35%), Positives = 165/303 (54%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++VL L S G V+ +TLYG T + + H + +T T VD++D E + +AI
Sbjct: 87 MGAITAVLWTLLSPGDEVIVDKTLYGCTFSYMRHGLAK-WGVTITHVDLTDPENLKTAI- 144
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 119
+T+V+YFE+ +NP + + +I +S +AH +VVVDNT++ P + P +GAD+V+H
Sbjct: 145 SDKTRVVYFETPANPNMRLVDIAAVSEIAHGASASVVVDNTYATPYLTRPIEMGADIVLH 204
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G D++AG V G A ++ + L+ G + G M P A + + L LR
Sbjct: 205 SATKYLGGHGDVVAGLVVGGAEQISEIR-LY-GMKDMTGAVMAPFNAMLILRGLKTLALR 262
Query: 180 MKEHCHRALIFARRMKK---LGLKVLYPGLEDHPHHELLKSMANKEYGF-GGLLCLDMET 235
M HC A + A + +G +V +PGL H L AN++ G ++ +++
Sbjct: 263 MDRHCASAQVVAEWLAAHPAVG-EVHFPGLTSFSQHAL----ANQQMAQPGAMIAFELKG 317
Query: 236 EEKANR-LMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRM 294
A R +MN L A+ AVSLG ETL+ EE+A GIS GLVR+
Sbjct: 318 GMDAGRAMMNRLNMIAR----AVSLGDAETLIQHPASMTHSTYTPEERAEHGISDGLVRL 373
Query: 295 SVG 297
SVG
Sbjct: 374 SVG 376
|
|
| UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 106/320 (33%), Positives = 170/320 (53%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M A+S+ L+ G H+VA+ +YG T AL+T+ F R I T VD SD E++ AI
Sbjct: 90 MGAVSAALLANLQIGDHLVASNAVYGCTFALMTNQFARF-GIEVTLVDFSDVELIERAI- 147
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV++ E+ NP L V ++ ++ +A +T +VDNTF +PL+ P LG DVVVH
Sbjct: 148 KPNTKVIFCETPVNPHLQVFDLSAIAAIAKRHSLTSIVDNTFMTPLLQQPIALGIDVVVH 207
Query: 120 SISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +K+++G D+IAG VCG A L ++ L +G M+P A+ + + L +
Sbjct: 208 SATKYLNGHGDVIAGIVCGSEAQLHRVKYEI----LKDIGAVMSPHDAWLILRGLKTLDV 263
Query: 179 RMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
R++ HC A A +++ +V YPGL+ H H + + GG++ ++ +
Sbjct: 264 RLQRHCESAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGQQMRRA---GGVIAFELAAD 320
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
+ M ++ N F +AVSLG E+L+ + E +A AGI L+R+SV
Sbjct: 321 --FTQAMAFVGNLKLFS-IAVSLGDAESLIQHPASMTHSPYSPEARAAAGIGDNLLRISV 377
Query: 297 GYLGTLDQRWSQFEKALSRM 316
G L D + +AL+ +
Sbjct: 378 G-LEDCDDIIADLSQALAAL 396
|
|
| TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 106/320 (33%), Positives = 170/320 (53%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M A+S+ L+ G H+VA+ +YG T AL+T+ F R I T VD SD E++ AI
Sbjct: 90 MGAVSAALLANLQIGDHLVASNAVYGCTFALMTNQFARF-GIEVTLVDFSDVELIERAI- 147
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV++ E+ NP L V ++ ++ +A +T +VDNTF +PL+ P LG DVVVH
Sbjct: 148 KPNTKVIFCETPVNPHLQVFDLSAIAAIAKRHSLTSIVDNTFMTPLLQQPIALGIDVVVH 207
Query: 120 SISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +K+++G D+IAG VCG A L ++ L +G M+P A+ + + L +
Sbjct: 208 SATKYLNGHGDVIAGIVCGSEAQLHRVKYEI----LKDIGAVMSPHDAWLILRGLKTLDV 263
Query: 179 RMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
R++ HC A A +++ +V YPGL+ H H + + GG++ ++ +
Sbjct: 264 RLQRHCESAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGQQMRRA---GGVIAFELAAD 320
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
+ M ++ N F +AVSLG E+L+ + E +A AGI L+R+SV
Sbjct: 321 --FTQAMAFVGNLKLFS-IAVSLGDAESLIQHPASMTHSPYSPEARAAAGIGDNLLRISV 377
Query: 297 GYLGTLDQRWSQFEKALSRM 316
G L D + +AL+ +
Sbjct: 378 G-LEDCDDIIADLSQALAAL 396
|
|
| UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 105/323 (32%), Positives = 164/323 (50%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS VL G VV+ + YGGT+ + F PR + T + D + + + I
Sbjct: 95 MAAISGVLYSFLRHGQRVVSTKDSYGGTNKIFEEFLPRM-GVAVTLCETFDQQQIEAEIA 153
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 119
+G +LY E+ +NPTL + +I L A G VV DNTF+ PL +P LG DVV+H
Sbjct: 154 KG-CDLLYLETPTNPTLKIVDIQRLVAAAKQVGALVVADNTFATPLNQNPLALGVDVVIH 212
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KF+SG D++ G CG L++ + + + G +++P A+ + I L LR
Sbjct: 213 SATKFLSGHGDVLGGVACGSEALMSQVRHYRE----INGASLDPFSAYLIIRGIKTLALR 268
Query: 180 MKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 236
M++ H A A+ + + L V YPGL +HP+H + + GFG ++ +
Sbjct: 269 MRQQQHSAAQLAQFLLNEPLVEAVNYPGLPNHPNHAVACAQMR---GFGAIVSFVLVGGM 325
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
+ +L+ L+ YA A +LG ET+ E EE+ GIS GLVR+SV
Sbjct: 326 DSVKQLLPRLR-YAH---CAGNLGAVETIYGPARTTSHVENTLEERQALGISEGLVRISV 381
Query: 297 GYLGTLDQRWSQFEKALSRMQDS 319
G T D + ++A + ++ S
Sbjct: 382 GIEDT-DDLLADLQQAFAWLRQS 403
|
|
| TIGR_CMR|GSU_0945 GSU_0945 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 107/318 (33%), Positives = 169/318 (53%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AISS L+ L S G H+V +YGGT LT F R + +TFVD +D + +A
Sbjct: 75 MAAISSTLL-LFSPGDHLVVCEDVYGGTFRALTQLFSRL-GVESTFVDATDTAAIEAAF- 131
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK LY E+ SNP + + ++ +RLA ++G +VDNTF +P + P LG DVV+H
Sbjct: 132 RPNTKGLYLETPSNPLMKITDLAAAARLARERGAITLVDNTFMTPYLQRPLDLGCDVVLH 191
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +KF++G +D++ G AV L + + Q A G + P+ ++ + I L +
Sbjct: 192 SGTKFLNGHSDVVCGFAVVRDPELGQRIRFI-QNAF---GAILGPQDSWLVLRGIKTLRV 247
Query: 179 RMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
RM+E A+ A + +K +V YPGL DHP H++ + G G +L ++T
Sbjct: 248 RMEESQAGAVKIANWLAGEKRVSRVFYPGLPDHPGHDI---HGRQSSGPGAVLSFTLDTV 304
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 296
E RL+ ++ A F AVSLG E+++ + E+A GI LVR+SV
Sbjct: 305 ETTRRLLEGMR-LAAF---AVSLGGVESIISYPARMSHAAMPPAERAARGIGDTLVRLSV 360
Query: 297 GYLGTLDQRWSQFEKALS 314
G L D ++ ++ ++
Sbjct: 361 G-LEDADDLLAEMDRLIN 377
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SGU9 | MGL_ARATH | 4, ., 4, ., 1, ., 1, 1 | 0.7816 | 0.9753 | 0.7165 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 324 | |||
| PLN02242 | 418 | PLN02242, PLN02242, methionine gamma-lyase | 0.0 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 1e-105 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 2e-81 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 2e-80 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 4e-64 | |
| PRK08249 | 398 | PRK08249, PRK08249, cystathionine gamma-synthase; | 1e-63 | |
| PRK06234 | 400 | PRK06234, PRK06234, methionine gamma-lyase; Provis | 2e-62 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 4e-62 | |
| PRK08133 | 390 | PRK08133, PRK08133, O-succinylhomoserine sulfhydry | 5e-61 | |
| TIGR01326 | 418 | TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | 8e-59 | |
| PRK07671 | 377 | PRK07671, PRK07671, cystathionine beta-lyase; Prov | 2e-58 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 5e-55 | |
| TIGR01325 | 381 | TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul | 3e-52 | |
| PRK08574 | 385 | PRK08574, PRK08574, cystathionine gamma-synthase; | 4e-52 | |
| PRK08064 | 390 | PRK08064, PRK08064, cystathionine beta-lyase; Prov | 6e-51 | |
| PRK08134 | 433 | PRK08134, PRK08134, O-acetylhomoserine aminocarbox | 7e-47 | |
| PRK07811 | 388 | PRK07811, PRK07811, cystathionine gamma-synthase; | 2e-46 | |
| PRK06176 | 380 | PRK06176, PRK06176, cystathionine gamma-synthase/c | 4e-45 | |
| PRK05939 | 397 | PRK05939, PRK05939, hypothetical protein; Provisio | 2e-43 | |
| PRK06460 | 376 | PRK06460, PRK06460, hypothetical protein; Provisio | 2e-43 | |
| PRK08248 | 431 | PRK08248, PRK08248, O-acetylhomoserine aminocarbox | 7e-43 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 3e-42 | |
| PRK06767 | 386 | PRK06767, PRK06767, methionine gamma-lyase; Provis | 4e-42 | |
| PRK07812 | 436 | PRK07812, PRK07812, O-acetylhomoserine aminocarbox | 6e-41 | |
| TIGR01329 | 378 | TIGR01329, cysta_beta_ly_E, cystathionine beta-lya | 3e-40 | |
| PRK08045 | 386 | PRK08045, PRK08045, cystathionine gamma-synthase; | 5e-39 | |
| PRK07504 | 398 | PRK07504, PRK07504, O-succinylhomoserine sulfhydry | 1e-38 | |
| PRK06084 | 425 | PRK06084, PRK06084, O-acetylhomoserine aminocarbox | 2e-38 | |
| PRK05968 | 389 | PRK05968, PRK05968, hypothetical protein; Provisio | 3e-38 | |
| PRK07810 | 403 | PRK07810, PRK07810, O-succinylhomoserine sulfhydry | 9e-38 | |
| PRK06434 | 384 | PRK06434, PRK06434, cystathionine gamma-lyase; Val | 5e-37 | |
| PRK05994 | 427 | PRK05994, PRK05994, O-acetylhomoserine aminocarbox | 1e-34 | |
| PRK08247 | 366 | PRK08247, PRK08247, cystathionine gamma-synthase; | 2e-33 | |
| PRK08861 | 388 | PRK08861, PRK08861, cystathionine gamma-synthase; | 7e-33 | |
| PRK08776 | 405 | PRK08776, PRK08776, cystathionine gamma-synthase; | 9e-33 | |
| PRK05613 | 437 | PRK05613, PRK05613, O-acetylhomoserine aminocarbox | 6e-32 | |
| PRK07049 | 427 | PRK07049, PRK07049, methionine gamma-lyase; Valida | 1e-31 | |
| PRK07269 | 364 | PRK07269, PRK07269, cystathionine gamma-synthase; | 2e-29 | |
| PLN02509 | 464 | PLN02509, PLN02509, cystathionine beta-lyase | 5e-29 | |
| PRK06702 | 432 | PRK06702, PRK06702, O-acetylhomoserine aminocarbox | 3e-27 | |
| PRK07582 | 366 | PRK07582, PRK07582, cystathionine gamma-lyase; Val | 2e-26 | |
| TIGR01324 | 377 | TIGR01324, cysta_beta_ly_B, cystathionine beta-lya | 3e-23 | |
| PRK09028 | 394 | PRK09028, PRK09028, cystathionine beta-lyase; Prov | 2e-20 | |
| PRK07050 | 394 | PRK07050, PRK07050, cystathionine beta-lyase; Prov | 3e-17 | |
| PRK05967 | 395 | PRK05967, PRK05967, cystathionine beta-lyase; Prov | 1e-16 | |
| PRK08114 | 395 | PRK08114, PRK08114, cystathionine beta-lyase; Prov | 2e-15 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 2e-07 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-05 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 6e-05 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 6e-04 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 0.002 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 0.003 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 0.004 |
| >gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 644 bits (1664), Expect = 0.0
Identities = 269/318 (84%), Positives = 291/318 (91%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAISSVL+QLCSSGGHVVA+ TLYGGTHALL HF PR CNITTTFVDI+D E V A+V
Sbjct: 101 MSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVV 160
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHS 120
G+TKVLYFESISNPTL VA+IPEL+R+AH+KGVTVVVDNTF+P+VLSPARLGADVVVHS
Sbjct: 161 PGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHS 220
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 180
ISKFISGGADIIAGAVCGPA LVNSMMDLH GALMLLGPTMNPKVAFELSER+PHL LRM
Sbjct: 221 ISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRM 280
Query: 181 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN 240
KEHC RA+ +A+RMK+LGLKV+YPGLEDHP H LLKSMANK YGFGGLLCLDM+TEE+AN
Sbjct: 281 KEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERAN 340
Query: 241 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300
RLM YLQN QFGFMAVSLGYYETLMSCSGSSTSSEL+ EEKA AGIS GLVRMSVGY G
Sbjct: 341 RLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG 400
Query: 301 TLDQRWSQFEKALSRMQD 318
TL+QRWSQFEKALS M+
Sbjct: 401 TLEQRWSQFEKALSAMKL 418
|
Length = 418 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = e-105
Identities = 128/318 (40%), Positives = 185/318 (58%), Gaps = 17/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+VL+ L +G HVVA+ LYGGT+ L P+ I TFVD D E + +AI
Sbjct: 65 MAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG-IEVTFVDPDDPEALEAAI- 122
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK++Y ES +NPTL V +I ++ LAH+ G +VVDNTF +P + P LGAD+VVH
Sbjct: 123 KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVH 182
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I G +D+IAG V G + + + A LG ++P A+ L + L LR
Sbjct: 183 SATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA---LGTILSPFDAWLLLRGLKTLPLR 239
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
M+ H AL A ++K +V YPGL HP HEL K + G+GG+ +++
Sbjct: 240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYGGVFSFELKGGL 296
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
E A + +N L + +AVSLG E+L+ S T S+L EE+A AGI+ GLVR+SV
Sbjct: 297 EAAKKFLNAL----KLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSV 352
Query: 297 GYLGTLDQRWSQFEKALS 314
G + ++ + E+AL
Sbjct: 353 G-IEDVEDLIADLEQALK 369
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 2e-81
Identities = 119/320 (37%), Positives = 178/320 (55%), Gaps = 18/320 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ L+ L +G HV+ LYGGT+ L + + TFVD D E + +AI
Sbjct: 88 MAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKF-GVEVTFVDPGDDEALEAAIK 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK+++ E+ SNP L V +IP ++RLA G VVVDNTF +P++ P LGAD+VVH
Sbjct: 147 EPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMD--LHQGALMLLGPTMNPKVAFELSERIPHLG 177
S +K++ G +D++ G V P N + L G ++P A+ L + L
Sbjct: 207 SATKYLGGHSDVLGGVVLTP----NEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLA 262
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235
LRM+ H AL A + KV YPGL HP HEL K G+GGL +++
Sbjct: 263 LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMT---GYGGLFSFELKN 319
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
EE A + ++ L+ + +A SLG E+L+S + T + + EE+A AGI+ GLVR+S
Sbjct: 320 EEAAKKFLDSLKLFK----LAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLS 375
Query: 296 VGYLGTLDQRWSQFEKALSR 315
VG L ++ + E+AL++
Sbjct: 376 VG-LEDVEDLIADLEQALAK 394
|
Length = 396 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 2e-80
Identities = 117/304 (38%), Positives = 174/304 (57%), Gaps = 21/304 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI + L+ L +G HVVA LYGGT+ L PR I TFVD SD + + +AI
Sbjct: 77 MAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG-IEVTFVDPSDLDALEAAI- 134
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK ++ E+ +NP L V +I ++++A G VVVDNTF SP + P LGAD+VVH
Sbjct: 135 KPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPYLQRPLELGADIVVH 194
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML---LGPTMNPKVAFELSERIPHL 176
S +K+I G +D++ G V VN +L + L G ++P A+ L + L
Sbjct: 195 SATKYIGGHSDVVGGVVV-----VNGREELAKRLRFLQNATGAVLSPFDAWLLLRGLKTL 249
Query: 177 GLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234
GLRM+ H AL A +++ KV YPGL HP HEL K + GFGG+L +++
Sbjct: 250 GLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMS---GFGGMLSFELK 306
Query: 235 T-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293
E A++ ++ L+ ++ +A SLG E+L+S + T + + EE+ AGI+ GL+R
Sbjct: 307 GGLEAASKFLDNLKLFS----LAESLGGVESLISHPATMTHASIPPEEREAAGITDGLIR 362
Query: 294 MSVG 297
+SVG
Sbjct: 363 LSVG 366
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 4e-64
Identities = 104/333 (31%), Positives = 162/333 (48%), Gaps = 47/333 (14%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+AI+ ++ L +G ++V++ LYGGT+ L +H R I FVD D E +AI
Sbjct: 87 QAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-GIEVRFVDPDDPENFEAAI- 144
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
TK ++ E+I NP L V +I ++ +AH GV ++VDNTF +P + P GAD+VVH
Sbjct: 145 DENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVH 204
Query: 120 SISKFISGGADIIAGAV-----------------CGPAN----------LVNSMMDLHQG 152
S +K+I G I G + P N+ +
Sbjct: 205 SATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKAR 264
Query: 153 ALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK---KLGLKVLYPGLE 207
+L LG T++P AF L + + L LRM+ HC AL A ++ K+ V YPGL
Sbjct: 265 VQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVA-WVNYPGLA 323
Query: 208 DHPHHELLKSMANKEY--GFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET 264
HP+H L A K G G +L ++ E + ++ L+ ++G +
Sbjct: 324 SHPYHAL----AKKYLPKGAGAVLTFGVKGGYEAGKKFIDALK-LFS---HLANIGDARS 375
Query: 265 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
L+ S+T +L+ EE+A AG++ L+R+SVG
Sbjct: 376 LVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG 408
|
Length = 426 |
| >gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-63
Identities = 111/323 (34%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ L G VV+ + YGGT+ + T F PR + T + DHE + + I
Sbjct: 89 MAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRM-GVDVTLCETGDHEQIEAEIA 147
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+G +LY E+ +NPTL + +I L+ A G VVVDNTF +P+ +P LGAD+V+H
Sbjct: 148 KG-CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KF+SG AD + G VCG L+ + + + G TM+P A+ + + L LR
Sbjct: 207 SATKFLSGHADALGGVVCGSKELMEQVYHYRE----INGATMDPMSAYLILRGMKTLKLR 262
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 236
+++ A+ A+ ++ V YPGLE HP+HE+ K+ GFGG+L ++
Sbjct: 263 VRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMR---GFGGILSFVLKGGM 319
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
+ RL+ L ++ A +LG ET+ + +++ E EE+A GI GLVR+SV
Sbjct: 320 DTVKRLLPKL----RYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISV 375
Query: 297 GYLGTLDQRWSQFEKALSRMQDS 319
G T D + E+A + ++
Sbjct: 376 GIEDTEDL-IADLEQAFAHLESE 397
|
Length = 398 |
| >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 2e-62
Identities = 125/322 (38%), Positives = 181/322 (56%), Gaps = 18/322 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AISS L +G HVVA+ TLYG T ALL H R + TFVD S+ E V +A+
Sbjct: 89 MGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY-GVEVTFVDTSNLEEVRNAL- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTF-SPLVLSPARLGADVV 117
+ TKV+Y E+ +NPTL V +I +S +AH +K V VDNTF +P + P +LGADVV
Sbjct: 147 KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVV 206
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
VHS +K+++G D+IAG V G +N + G + G + P AF + + L
Sbjct: 207 VHSATKYLNGHGDVIAGFVVGKEEFINQVK--LFGIKDMTGSVIGPFEAFLIIRGMKTLQ 264
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235
+RM++HC A+ A+ ++ KV YPGLE ++EL K + G ++ +++
Sbjct: 265 IRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSL---PGAMISFELKG 321
Query: 236 E-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
E+ +MN ++ +AVSLG ETL+ S T S AEE+ AGIS GLVR+
Sbjct: 322 GVEEGKVVMNNVK----LATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRL 377
Query: 295 SVGYLGTLDQRWSQFEKALSRM 316
SVG L +D + ++AL +
Sbjct: 378 SVG-LEDVDDIIADLKQALDLI 398
|
Length = 400 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 202 bits (514), Expect = 4e-62
Identities = 109/320 (34%), Positives = 179/320 (55%), Gaps = 16/320 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ L+ + +G H+++ LYG T ALL H + I F++++ E V + I
Sbjct: 84 MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKF-GIQVDFINMAIPEEVKAHI- 141
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK++YFE+ +NPT+ + ++ + R AH +GV V+VDNTF +P++ +P LG DVVVH
Sbjct: 142 KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVH 201
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I G D++AG +CG A L+ + + + G ++P A+ + + L +R
Sbjct: 202 SATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT--GSVISPFDAWLILRGLKTLNIR 259
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
MK H A+ A +K KV YPG EDHP H++ GG++ +++
Sbjct: 260 MKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRM---GGGMITFELKGGF 316
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
A +L+N L+ +AVSLG ETL+ S T + + EE+ AGI+ G++R+SV
Sbjct: 317 AGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSV 372
Query: 297 GYLGTLDQRWSQFEKALSRM 316
G L D + ++AL +
Sbjct: 373 G-LEDADDLIADLKQALDAL 391
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 5e-61
Identities = 106/303 (34%), Positives = 174/303 (57%), Gaps = 21/303 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI +V+M L +G HVV++R+L+G T +L F R I TTFVD++D + +A V
Sbjct: 86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTFVDLTDLDAWRAA-V 143
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK+ + E+ SNP +A+I L+ +AH G +VVDN F +P + P +LGADVV+H
Sbjct: 144 RPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIH 203
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G ++ GAV G L+ + G L GPT++P A+ + + L LR
Sbjct: 204 SATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRTAGPTLSPFNAWVFLKGLETLSLR 259
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
M+ H AL A ++ +V YPGL HP HEL K ++ G G ++ +++
Sbjct: 260 MEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKR---QQKGGGAIVSFEVKGGR 316
Query: 237 EKANRLMNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
E A R+++ + ++++ LG +T ++ ++T L+ E +A AGI+ GL+R+
Sbjct: 317 EAAWRVIDATR------LISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRV 370
Query: 295 SVG 297
+VG
Sbjct: 371 AVG 373
|
Length = 390 |
| >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 8e-59
Identities = 102/329 (31%), Positives = 160/329 (48%), Gaps = 40/329 (12%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+AI+ ++ L +G ++V++ LYGGT+ L H R I FVD D E AI
Sbjct: 82 QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL-GIEVRFVDPDDPEEFEKAID 140
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK ++ E+I NP + V +I ++ +AH GV ++VDNTF +P + P GAD+VVH
Sbjct: 141 E-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVH 199
Query: 120 SISKFISGGADIIAGAV----------------CGPA----------NLVNSMMDLHQGA 153
S +K+I G I G + P N +
Sbjct: 200 SATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARV 259
Query: 154 LML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDH 209
+L LG ++P AF L + + L LRM+ H AL A ++ V YPGL H
Sbjct: 260 QLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASH 319
Query: 210 PHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268
PHH L K K GFG +L +++ E + ++ L+ + ++G ++L+
Sbjct: 320 PHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLASH----LANVGDAKSLVIH 373
Query: 269 SGSSTSSELNAEEKALAGISAGLVRMSVG 297
S+T +L+ EE+ AG++ GL+R+SVG
Sbjct: 374 PASTTHQQLSEEEQLKAGVTPGLIRLSVG 402
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418 |
| >gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 2e-58
Identities = 120/305 (39%), Positives = 179/305 (58%), Gaps = 26/305 (8%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI++V+M L SSG HV+ +YGGT+ ++T R I TFVD S+ E V AI
Sbjct: 75 MAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRF-GIEHTFVDTSNLEEVEEAI- 131
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 119
+ TK +Y E+ +NP L + +I ++S +A +KG+ +VDNTF P SP LGAD+V+H
Sbjct: 132 RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLH 191
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMM---DLH--QGALMLLGPTMNPKVAFELSERIP 174
S +K++ G +D++AG V +VNS DLH Q + G + P+ ++ L +
Sbjct: 192 SATKYLGGHSDVVAGLV-----VVNSPELAEDLHFVQNS---TGGILGPQDSWLLLRGLK 243
Query: 175 HLGLRMKEHCH--RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 232
LG+RM+EH RA+ KV YPGL HP+HEL K AN GFGG++ D
Sbjct: 244 TLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQAN---GFGGMISFD 300
Query: 233 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292
+ +EE AN+++ LQ + +A SLG E+L+S T + + A+ + GI+ GL+
Sbjct: 301 VGSEETANKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLI 356
Query: 293 RMSVG 297
R+SVG
Sbjct: 357 RISVG 361
|
Length = 377 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 5e-55
Identities = 112/302 (37%), Positives = 159/302 (52%), Gaps = 17/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ L L G V+ +TLYG T A L H +T VD++D + +AI
Sbjct: 90 MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF-GVTVRHVDLTDPAALKAAIS 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+T+++YFE+ +NP + + +I ++ +AH G VVVDNT+ +P + P LGAD+VVH
Sbjct: 149 D-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVH 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G DI AG V G L + + +G + G M+P AF L + L LR
Sbjct: 208 SATKYLGGHGDITAGLVVGGKALADRIR--LEGLKDMTGAVMSPFDAFLLMRGLKTLALR 265
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLK-SMANKEYGFGGLLCLDMETE 236
M HC A A + + V YPGL H L + MA GG++ +++
Sbjct: 266 MDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMAL----PGGMIAFELKGG 321
Query: 237 EKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
A R MN LQ +A+ AVSLG E+L S T S EE+A GIS GLVR+S
Sbjct: 322 IAAGRRFMNALQLFAR----AVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLS 377
Query: 296 VG 297
VG
Sbjct: 378 VG 379
|
Length = 403 |
| >gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 3e-52
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 17/301 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI + LM L +G HVVA+R+L+G + + PR + T FVD +D +A +
Sbjct: 79 MAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF-GVQTVFVDGTDLSAWEAA-L 136
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK ++ E+ SNP + +I ++ LAH G VVVDN F +PL+ P +LGADVVV+
Sbjct: 137 KPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATPLLQQPLKLGADVVVY 196
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K I G ++ GA+ G M + Q L GP M+P A+ L + + L +R
Sbjct: 197 SATKHIDGQGRVLGGAILGSEEY---MDEPVQKLLRHTGPAMSPFNAWVLLKGLETLAIR 253
Query: 180 MKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
++ AL A + V YPGL HP HEL K + G G ++ D++
Sbjct: 254 VQHQNASALAIAEWLNGHPSVQ-WVYYPGLPSHPQHELAKRQMS---GGGTVVTFDLDCR 309
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
+ A ++++ ++ ++ +LG ++ ++ ++T + EE+A AGI GLVR+SV
Sbjct: 310 QAAFKVLDAMRLVD----ISNNLGDAKSTITHPATTTHRRMGPEERAAAGIGDGLVRLSV 365
Query: 297 G 297
G
Sbjct: 366 G 366
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381 |
| >gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 4e-52
Identities = 93/302 (30%), Positives = 155/302 (51%), Gaps = 17/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS++ L +G VV YG T LL + + E + AI
Sbjct: 78 MAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY---PSTEDIIEAIK 134
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+GRTK+++ E+++NPTL V ++PE+++ A + G +VVDNTF +PL+ P R GAD VVH
Sbjct: 135 EGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVH 194
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGL 178
S++K+I+G D++ G + + +L + LG M P A+ L R + L +
Sbjct: 195 SLTKYIAGHNDVVGGVAVAWSGEF--LEELWEWRRR-LGTIMQPFEAY-LVLRGLKTLEV 250
Query: 179 RMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-ET 235
R + C A+ A + + +V YPGL P+H + K + K+ +GG++ +
Sbjct: 251 RFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDL-YGGVVSFRVKGG 309
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
+ + + L + + SLG E+L + S +S + E++ GI+ LVR+S
Sbjct: 310 RDAVLKFLRSL----KLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLS 365
Query: 296 VG 297
VG
Sbjct: 366 VG 367
|
Length = 385 |
| >gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 6e-51
Identities = 103/318 (32%), Positives = 169/318 (53%), Gaps = 19/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ + L S G HV+ + +YGGT+ ++T R I TFVD+++ E V I
Sbjct: 79 MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTFVDMTNLEEVAQNI- 135
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK+ Y E+ SNP L V +I + +LA G VDNTF +PL+ P LGADVV+H
Sbjct: 136 KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLH 195
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +KF++G +D++AG AV L + L G + + + + + L +
Sbjct: 196 SATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNS----FGAVLGVQDCWLVLRGLKTLHV 251
Query: 179 RMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
R++ A A +++ V YPGL+ H ++ +S A G +L +++E
Sbjct: 252 RLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT---SAGAVLSFTLQSE 308
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
E + ++++ + AVSLG E+++S + + + EE+ GI+ GL+R+SV
Sbjct: 309 EAVRQFVSHV----KLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSV 364
Query: 297 GYLGTLDQRWSQFEKALS 314
G L +D + FE+ALS
Sbjct: 365 G-LENVDDLIADFEQALS 381
|
Length = 390 |
| >gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 7e-47
Identities = 97/329 (29%), Positives = 161/329 (48%), Gaps = 39/329 (11%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+A+ + L +G H+VA+ LYGG+H LL + R I TTFV D + +AI
Sbjct: 89 QAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRF-GIETTFVKPGDIDGWRAAI- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ T++L+ E++ NP L V +IP ++ +AH+ GV ++VD+TF +P +L P GAD+V H
Sbjct: 147 RPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYH 206
Query: 120 SISKFISGGADIIAGAV-----------------CGPANLVNSMMDLHQ---GALML--- 156
S +KF+ G I G + P + M+ + A +L
Sbjct: 207 SATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRAR 266
Query: 157 ------LGPTMNPKVAFELSERIPHLGLRMKEHCH--RALIFARRMKKLGLKVLYPGLED 208
G ++P A++L + I L LRM+ H R ++ +V +P LE
Sbjct: 267 REGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELES 326
Query: 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268
HP H L K + + G G + D++ A R ++++ F +A ++G +L+
Sbjct: 327 HPDHALAKRLLPR--GAGSVFSFDLKGGRAAGR--KFIESLKLFSHLA-NVGDARSLVIH 381
Query: 269 SGSSTSSELNAEEKALAGISAGLVRMSVG 297
S+T ++A A AGI G +R+S+G
Sbjct: 382 PASTTHFRMDAAALAAAGIGEGTIRLSIG 410
|
Length = 433 |
| >gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 2e-46
Identities = 103/306 (33%), Positives = 149/306 (48%), Gaps = 29/306 (9%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A +L + G H+V YGGT L+ F R + T VD+SD + V +AI
Sbjct: 86 MAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDLSDLDAVRAAI- 143
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
RTK+++ E+ +NP L++ +I L+ LAHD G VVVDNTF SP + P LGADVVVH
Sbjct: 144 TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVH 203
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I G +D++ GA+ ++ Q G P A+ + L +R
Sbjct: 204 STTKYIGGHSDVVGGALVTNDEELDEAFAFLQNG---AGAVPGPFDAYLTLRGLKTLAVR 260
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHEL-LKSMANKEYGFGGLLCLDMETE 236
M H A A + VLYPGL HP HE+ + M GFGG++ + +
Sbjct: 261 MDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR----GFGGMVSVRLAGG 316
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG-----SSTSSELNAEEKALAGISAGL 291
E+A R + +A SLG E+L+ S+ S+L + L
Sbjct: 317 EEAAR---DFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLE--------VPDDL 365
Query: 292 VRMSVG 297
VR+SVG
Sbjct: 366 VRLSVG 371
|
Length = 388 |
| >gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 4e-45
Identities = 102/300 (34%), Positives = 160/300 (53%), Gaps = 16/300 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
++ I +V L SG HV+ +YGGT L + ++ T +D SD + AI
Sbjct: 75 LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKN-GLSCTIIDTSDLSQIKKAI- 131
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK LY E+ SNP L + ++ + + +A D G+ +VDNTF +P +P LGAD+VVH
Sbjct: 132 KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVH 191
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++ G +D++AG V + + Q A +G + P+ ++ L I LGLR
Sbjct: 192 SGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDSWLLQRGIKTLGLR 248
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ H AL A ++K KV YPGL HP+HEL K GF G+L ++ +
Sbjct: 249 MEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMR---GFSGMLSFTLKNDS 305
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+A + ++++ F + SLG E+L+ T + + E++ AGI GLVR+SVG
Sbjct: 306 EA---VAFVESLKLF-ILGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG 361
|
Length = 380 |
| >gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-43
Identities = 96/336 (28%), Positives = 166/336 (49%), Gaps = 34/336 (10%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI++V + L +G H+V+++ L+G T++L R + T VD +D + V +AI
Sbjct: 72 MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTL--RGLGVEVTMVDATDVQNVAAAI- 128
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ T++++ E+I+NP VA++ + L ++G+ VVDNT SP + P +GA +V++
Sbjct: 129 RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLVIN 188
Query: 120 SISKFISGGADIIAGAVCGP--------ANLVNS----------MMDLHQGALMLLGPTM 161
S+SK+I+G + + GAV N+ + + + + L +G T+
Sbjct: 189 SLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATL 248
Query: 162 NPKVAFELSERIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPGLEDHPHHELLKSM 218
+ + A ++ L LR+ C AL A+ + K+ +V YPGL HP H +
Sbjct: 249 SSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVA-RVYYPGLASHPQHARATEL 307
Query: 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 278
+GGLL ++ +N L + A LG TL+ + E+
Sbjct: 308 FR---HYGGLLSFELADGIDCFDFLNRL----KLVIKATHLGDTRTLVIPVAPTIYYEMG 360
Query: 279 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314
AE +A GI+ L+R+SVG D + FE+AL
Sbjct: 361 AERRASMGIADSLIRVSVGIEDEADLI-ADFEQALD 395
|
Length = 397 |
| >gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 2e-43
Identities = 93/302 (30%), Positives = 159/302 (52%), Gaps = 19/302 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AIS+ + L G V+ R ++G ++ T + + + + ++ A
Sbjct: 70 MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYL-KNWGVNVDASNPGSDNIIEKAKS 128
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 119
+ R V++ E+I+NP L V +I ELS++ + G ++VD TFS P+ P LGAD+VVH
Sbjct: 129 K-RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVH 187
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGL 178
S SKF++G D+IAG G L+N + + + LG +++P A+ L+ R I L +
Sbjct: 188 SASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRT----LGTSLDPHAAY-LTLRGIKTLKI 242
Query: 179 RMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235
RM A A ++ +KV YPGL+ H +E+ + + GFGG+L ++
Sbjct: 243 RMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLK---GFGGVLSFEVNGG 299
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
+E A ++M L + A +LG +++S + + L+ EE+ + GI+ L+R+S
Sbjct: 300 QESALKVMKSL----KLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLS 355
Query: 296 VG 297
VG
Sbjct: 356 VG 357
|
Length = 376 |
| >gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 7e-43
Identities = 105/328 (32%), Positives = 164/328 (50%), Gaps = 39/328 (11%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ 61
+AI+ ++ + S+G +V++ +LYGGT+ L H P+ IT FVD SD E +AI
Sbjct: 90 AAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK-LGITVKFVDPSDPENFEAAIT- 147
Query: 62 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHS 120
+TK L+ E+I NP V +I ++ +AH+ G+ ++VDNTF SP +L P GAD+VVHS
Sbjct: 148 DKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHS 207
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQG---------------------------- 152
+KFI G I G + G
Sbjct: 208 ATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARV 267
Query: 153 -ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 209
L LG ++P +F L + + L LRM+ H AL A+ +++ V YPGL H
Sbjct: 268 QLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSH 327
Query: 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 269
P +EL K K G G +L ++ +A + + + F +A ++G ++L+
Sbjct: 328 PSYELAKKYLPK--GQGAILTFGIKGGVEAGK--KLIDSVKLFSHLA-NVGDSKSLIIHP 382
Query: 270 GSSTSSELNAEEKALAGISAGLVRMSVG 297
S+T +L+ EE+ AG++ GLVR+SVG
Sbjct: 383 ASTTHQQLSEEEQLAAGVTPGLVRLSVG 410
|
Length = 431 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 3e-42
Identities = 104/300 (34%), Positives = 157/300 (52%), Gaps = 14/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI V L +VA YGGT+ LL + C FVD D + + +A+
Sbjct: 76 MSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC-FRVLFVDQGDEQALRAALA 134
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
Q + K++ E+ SNP L V +I ++ LA G VVVDNTF SP + +P LGAD+V+H
Sbjct: 135 Q-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLH 193
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+++G +D+IAGAV A +L A LG T ++ + L R
Sbjct: 194 SCTKYLNGHSDVIAGAVI--AKDPQVAEELAWWA-NNLGVTGGAFDSYLTLRGLRTLVAR 250
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ A ++ L K+ YPGL DHP HE+ A ++ GFG +L +++ E
Sbjct: 251 MRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEI---AARQQKGFGAMLSFELKGGE 307
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ + +L + F +A SLG E+L++ + T + + E +A AGIS L+R+SVG
Sbjct: 308 QT--VRRFLGGLSLFT-LAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG 364
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 4e-42
Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 23/317 (7%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ L+ +G H++ + LYG T+ L IT +F D+ + + I
Sbjct: 86 MAAISATLIGFLKAGDHIICSNGLYGCTYGFLE-VLEEKFMITHSFCDMETEADIENKI- 143
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK+++ E+ NPT+ + ++ ++ R+A G+ V+VDNTF SP + P LG D VVH
Sbjct: 144 RPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVH 203
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I G D++AG + + + +G M P A+ L + L +R
Sbjct: 204 SATKYIGGHGDVVAGVTICKTRALAEKIRPMRKD---IGGIMAPFDAWLLLRGLKTLAVR 260
Query: 180 MKEHCHRALIFARRMKKLGLKVLYPGLED--HPHHELLKSMANKEYGFGGLLCLDME-TE 236
M HC A +K + +E +P EL + GG++ ++ +
Sbjct: 261 MDRHCDNAEKIVSFLK------NHDAVEGVWYPEGELASRQMKRG---GGVISFSIKGGK 311
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
E+ +N L F +AVSLG ETL+ + T + + AE + GI L+R+SV
Sbjct: 312 EETQAFINDL----HFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSV 367
Query: 297 GYLGTLDQRWSQFEKAL 313
G L + + S E+AL
Sbjct: 368 G-LESWEDIVSDLEQAL 383
|
Length = 386 |
| >gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 6e-41
Identities = 97/333 (29%), Positives = 162/333 (48%), Gaps = 38/333 (11%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ 61
+A + ++ L +G H+V++ LYGGT+ L + P+ I +FV+ D A V+
Sbjct: 95 AAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAVR 153
Query: 62 GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHS 120
TK + E+ISNP + V +IP ++ +AH+ GV ++VDNT +P ++ P GAD+VVHS
Sbjct: 154 PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHS 213
Query: 121 ISKFISGGADIIAGAVC------------------GPANLVNSMMDLHQGALML------ 156
+K++ G IAG + P+ +L A L
Sbjct: 214 ATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQL 273
Query: 157 ---LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPH 211
LG ++P AF +++ + L LR++ H A A ++ V Y GL P
Sbjct: 274 LRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPW 333
Query: 212 HELLKSMANKEYGFGGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSG 270
+E K +A K G G +L ++ +A + +N L ++ ++G +L+
Sbjct: 334 YERAKRLAPK--GTGAVLSFELAGGVEAGKAFVNALTLHSHV----ANIGDVRSLVIHPA 387
Query: 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303
S+T S+L EE+ G++ GLVR++VG G D
Sbjct: 388 STTHSQLTPEEQLATGVTPGLVRLAVGIEGIDD 420
|
Length = 436 |
| >gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-40
Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 20/302 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+ V+ +L ++G ++A LYGGT LLT PR+ + VD +D + V +A+
Sbjct: 72 MAALD-VITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRS-GVVVVHVDTTDLDKVKAAL- 128
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT-FSPLVLSPARLGADVVVH 119
+TK++ ES +NP + +I ++S +AH + VVVDNT SPL+ +P LGAD+V H
Sbjct: 129 GPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYH 188
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KF++G +D++AG + + + Q + G + P + L I L +R
Sbjct: 189 SATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNS---TGSGLAPFDCWLLLRGIKTLAIR 245
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
+++ A A + KV Y GL HP L S A G G +L + +
Sbjct: 246 IEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAK---GAGSVLSFETGSVA 302
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETL--MSCSGSSTSSELNAEEKALAGISAGLVRMS 295
+ RL+ + ++ + VS G +L M C S S + AE + G+ LVR+S
Sbjct: 303 LSKRLVEATKLFS----ITVSFGSVNSLISMPCFMSHAS--IPAEVREERGLPEDLVRLS 356
Query: 296 VG 297
VG
Sbjct: 357 VG 358
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 |
| >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-39
Identities = 93/300 (31%), Positives = 156/300 (52%), Gaps = 14/300 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI V G +VA YGG++ L R C FVD D + + +A+
Sbjct: 77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC-YRVLFVDQGDEQALRAALA 135
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ + K++ ES SNP L V +I ++ LA + G VVDNTF SP + +P LGAD+V+H
Sbjct: 136 E-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+++G +D++AG V V + + + + G + ++ L + L R
Sbjct: 195 SCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVPR 251
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ A + ++ L K+ +P L ++ HE+ A ++ GFG +L +++ +E
Sbjct: 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEI---AARQQKGFGAMLSFELDGDE 308
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ R +L + F +A SLG E+L+S + + T + + E +A AGIS L+R+S G
Sbjct: 309 QTLR--RFLGGLSLFT-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG 365
|
Length = 386 |
| >gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-38
Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 19/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+++ ++ +G HVVAAR L+G ++ PR I +T VD D + A V
Sbjct: 90 MAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRY-GIESTLVDGLDLDNWEKA-V 147
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV + ES +NPTL V +I ++++A+ G +VVDN F +PL P LGA +VV+
Sbjct: 148 RPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVY 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K I G + G V + + Q GP+++P A+ L + + L +R
Sbjct: 208 SATKHIDGQGRCLGGVVLSDKAWIEEHL---QDYFRHTGPSLSPFNAWTLLKGLETLPVR 264
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGG-LLCLDME-T 235
+++ A A + +V+YPG DHP +++ K+ G L+ +++
Sbjct: 265 VRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIA----KQMTGGSTLVAFELKGG 320
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
+E A R +N L + ++ +LG ++L++ ++T L+ E +A GIS G +R+S
Sbjct: 321 KEAAFRFLNAL----KIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLS 376
Query: 296 VGYLGTLDQRWSQFEKAL 313
G L D AL
Sbjct: 377 AG-LEDTDDLIEDLAAAL 393
|
Length = 398 |
| >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-38
Identities = 102/332 (30%), Positives = 160/332 (48%), Gaps = 44/332 (13%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI+ + + +G ++V+ LYGGT+ LL H PR I T F D + A++
Sbjct: 83 MAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRI-GIETRFAAHDDIAAL-EALI 140
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
RTK ++ ESI NP + +I L+ AH GV ++VDNT +P++ P GAD+VVH
Sbjct: 141 DERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVH 200
Query: 120 SISKFISGGADIIAGAVCGPAN-----------LVNSMMDLHQGA--------------- 153
S++K+I G I G V L+N+ + G
Sbjct: 201 SLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRC 260
Query: 154 ----LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLE 207
L +G ++P AF + + + L LRM+ H AL AR +++ V Y GL
Sbjct: 261 RVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLP 320
Query: 208 DHPHHEL-LKSMANKEYGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETL 265
DHP HEL + M K +L ++ + A R ++ L+ + V++G ++L
Sbjct: 321 DHPEHELARRYMGGKP---ASILSFGIKGGQAAGARFIDALKLVVRL----VNIGDAKSL 373
Query: 266 MSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
S+T +LN EE AG+S +VR+S+G
Sbjct: 374 ACHPASTTHRQLNDEELEKAGVSRDMVRLSIG 405
|
Length = 425 |
| >gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-38
Identities = 93/317 (29%), Positives = 144/317 (45%), Gaps = 22/317 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AISS ++ G +VA R +Y L R + +VD D E V A+
Sbjct: 88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM-GVEVDYVDGRDEEAVAKAL- 145
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
K+LY ES ++ + ++ L+ LA GV ++DN++ SP+ P LG D+V+H
Sbjct: 146 -PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIH 204
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S SK++ G +D +AG V G + + A LG ++P A+ L + L LR
Sbjct: 205 SASKYLGGHSDTVAGVVAGSKEHIARINAE---AYPYLGAKLSPFEAWLLLRGLRTLPLR 261
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
MK H AL ARR+K + +V +P L +HP L G GL
Sbjct: 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLS--------GTSGLFSFIFREGI 313
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ L+ + + VS G +E+L+ + + A G+S VR+ VG
Sbjct: 314 DVRAFADALKLFR----LGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVG 369
Query: 298 YLGTLDQRWSQFEKALS 314
GT W+ E+AL+
Sbjct: 370 LEGTEAL-WADLEQALA 385
|
Length = 389 |
| >gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 9e-38
Identities = 95/325 (29%), Positives = 161/325 (49%), Gaps = 27/325 (8%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSA+ + L L +G +VAAR+L+G + PR + T FVD D A+
Sbjct: 95 MSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEALS 153
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+ ++FE+ SNP ++ +I +S LAH G VV+DN F +PL+ LGADVVV+
Sbjct: 154 V-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVY 212
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K I G ++ GA+ G ++ + Q + GP ++ A+ L + + L LR
Sbjct: 213 SGTKHIDGQGRVLGGAILGDREYIDGPV---QKLMRHTGPALSAFNAWVLLKGLETLALR 269
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGG------LLCL 231
++ AL A ++ V YP L HP ++L A ++ GG L
Sbjct: 270 VRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDL----AKRQMSGGGTVVTFELDAP 325
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNAEEKALAGISA 289
+ +++A +++ L+ + +S LG ++L++ ++T + E +A G+
Sbjct: 326 EDAAKKRAFEVLDKLR------VIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGD 379
Query: 290 GLVRMSVGYLGTLDQRWSQFEKALS 314
G+VR+SVG T D + ++AL
Sbjct: 380 GVVRLSVGLEDTDDLI-ADLDRALG 403
|
Length = 403 |
| >gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 5e-37
Identities = 101/321 (31%), Positives = 159/321 (49%), Gaps = 31/321 (9%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S ++ L G +++ LYG T +FF + VD D + +NS
Sbjct: 89 MGAITSAILSLIKKGKRILSISDLYGQTF----YFFNKVLKTLGIHVDYIDTDRLNSLDF 144
Query: 61 QGRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVV 118
++Y ESI+NPTL V +I +S H+ V+VD TF SP +P LGADVV+
Sbjct: 145 DPSNYDLIYAESITNPTLKVPDIKNVSSFCHEN--DVIVDATFASPYNQNPLDLGADVVI 202
Query: 119 HSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
HS +K+ISG +D++ G ++ N++++ + LG +P A+ + LG
Sbjct: 203 HSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK----TLGSNPDPIQAYLALRGLKTLG 258
Query: 178 LRMKEHCHRALIFAR--RMKKLGLKVLYPGLEDHPHHELLKSMANKEY-GFGGLLCLDME 234
LRM++H + AR R K V YP E + K GFGG+L ++
Sbjct: 259 LRMEKHNKNGMELARFLRDSKKISNVYYPDTE----------IGKKVLRGFGGMLSFELR 308
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
+ E ++ + L + +A SLG E+L++ ++ S L+ EE+ GIS LVR
Sbjct: 309 SMEDVHKFIRNL----EIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRF 364
Query: 295 SVGYLGTLDQRWSQFEKALSR 315
S+G + +D E ALS+
Sbjct: 365 SIG-IEDIDDLIKDIENALSK 384
|
Length = 384 |
| >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-34
Identities = 95/323 (29%), Positives = 148/323 (45%), Gaps = 39/323 (12%)
Query: 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV 66
V L G +AAR LYGG+ H F ++ + D D AI RTK
Sbjct: 94 VFHTLLQPGDEFIAARKLYGGSINQFGHAF-KSFGWQVRWADADDPASFERAI-TPRTKA 151
Query: 67 LYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFI 125
++ ESI+NP V +I ++ +AH G+ ++VDNT SP ++ P GAD+VVHS++KF+
Sbjct: 152 IFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFL 211
Query: 126 SGGADIIAGAV--CGPANLVNSM--------------MDLHQG-------------ALML 156
G + + G + G + S + LH+ L
Sbjct: 212 GGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRD 271
Query: 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHEL 214
LGP ++P AF + I L LRM+ H AL A +K V Y GL D P+H L
Sbjct: 272 LGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHAL 331
Query: 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 274
+ + K G G + ++ +A + + + F +A ++G +L+ S+T
Sbjct: 332 AQKYSPK--GAGAVFTFGLKGGYEAG--VKLVSSLKLFSHLA-NIGDTRSLVIHPASTTH 386
Query: 275 SELNAEEKALAGISAGLVRMSVG 297
+L E+K AG +VR+S+G
Sbjct: 387 RQLTDEQKVAAGAGPDVVRLSIG 409
|
Length = 427 |
| >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-33
Identities = 83/301 (27%), Positives = 147/301 (48%), Gaps = 34/301 (11%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI ++M L SG ++ + LYGGT+ L + N+ +V+ + + + AI
Sbjct: 77 MAAIQ-LVMSLFRSGDELIVSSDLYGGTYRLFE-EHWKKWNVRFVYVNTASLKAIEQAIT 134
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
TK ++ E+ +NP + +I ++++A G+ ++VDNTF +P++ P GAD+V+H
Sbjct: 135 P-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIH 193
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +K++ G D++AG V L + A G ++P ++ L + L L
Sbjct: 194 SATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAA----GAVLSPFDSWLLIRGMKTLAL 249
Query: 179 RMKEHCHRALIFARRMKKL-GLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
RM++H A A + + G+ VLYPG GG+L ++ E
Sbjct: 250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGR-------------------GGMLSFRLQDE 290
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
E N +L++ F A SLG E+ ++ + T +++ E + G+ L+R SV
Sbjct: 291 EWVNP---FLKSLKLITF-AESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSV 346
Query: 297 G 297
G
Sbjct: 347 G 347
|
Length = 366 |
| >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 7e-33
Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 26/305 (8%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA--CNITTTFVDISDHEMVNSAI 59
SA++ + L +VA YGGT+ L F RA + FVD SD +++A+
Sbjct: 79 SALNLWVSALLGPDDLIVAPHDCYGGTYRL---FNTRANKGDFKVQFVDQSDAAALDAAL 135
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVV 118
+ + K++ E+ SNP + V +I EL + A G V VDNTF +P++ P LGAD V+
Sbjct: 136 AK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVI 194
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM----LLGPTMNPKVAFELSERIP 174
HS +K+I+G +D+I G + + H L +G T P ++ I
Sbjct: 195 HSTTKYINGHSDVIGGVLI-------TKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIR 247
Query: 175 HLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 232
LG RM+ H A ++ L + +P L +HP HE+ K ++ GFG + L
Sbjct: 248 TLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAK---KQQSGFGSM--LS 302
Query: 233 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292
E +L +++ A F +A SLG E+L+ S T + E A AG+S L+
Sbjct: 303 FEFAGSFEQLKVFVKALALFS-LAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLL 361
Query: 293 RMSVG 297
R+SVG
Sbjct: 362 RLSVG 366
|
Length = 388 |
| >gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 9e-33
Identities = 103/304 (33%), Positives = 153/304 (50%), Gaps = 22/304 (7%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+ VL L G +V YGG+ L + T D++D + A+
Sbjct: 85 MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALIT-ADLTDPRSLADALA 143
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
Q K++ E+ SNP L + ++ + AH G VVDNTF SP + P GAD+V+H
Sbjct: 144 Q-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLH 202
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM---LLGPTMNPKVAFELSERIPHL 176
S +K+I+G +D++ GAV V +LHQ + LG T +P AF + L
Sbjct: 203 STTKYINGHSDVVGGAV------VARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTL 256
Query: 177 GLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234
R++ H A A + +V YPGL HP H L A ++ GFG +L ++E
Sbjct: 257 DARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHAL---AARQQKGFGAMLSFELE 313
Query: 235 TEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293
E A R ++ L+ + +A SLG E+L++ S T + + AE +A AGIS GL+R
Sbjct: 314 GGEAAVRAFVDGLRYFT----LAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLR 369
Query: 294 MSVG 297
+SVG
Sbjct: 370 LSVG 373
|
Length = 405 |
| >gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-32
Identities = 91/333 (27%), Positives = 149/333 (44%), Gaps = 43/333 (12%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+A ++ ++ L +G H+V + LYGGT L R I TFV+ D A V
Sbjct: 94 QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR-LGIEVTFVENPDDPESWQAAV 152
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SPARLGADVVVH 119
Q TK + E+ +NP V +IP ++ +AH V ++VDNT + L P LGADVVV
Sbjct: 153 QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVA 212
Query: 120 SISKFISGGADIIAGAVC-----------------------GPANLVNSMMDLHQGALML 156
S++KF +G + G + PA DL A L
Sbjct: 213 SLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGL 272
Query: 157 ---------LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPG 205
G T++P A+ ++ + L LR++ H A+ A + KV + G
Sbjct: 273 KARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAG 332
Query: 206 LEDHPHHELLKSMANKEYGFGGLLCLDM-ETEEKANRLMNYLQNYAQFGFMAVSLGYYET 264
L+D P + K +Y G +L D+ +++A ++ L+ ++ ++G +
Sbjct: 333 LKDSPWYA-TKEKLGLKYT-GSVLSFDIKGGKDEAWAFIDALKLHSNLA----NIGDVRS 386
Query: 265 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
L+ ++T S+ + A AGI+ VR+SVG
Sbjct: 387 LVVHPATTTHSQSDEAGLARAGITQATVRLSVG 419
|
Length = 437 |
| >gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-31
Identities = 88/325 (27%), Positives = 142/325 (43%), Gaps = 51/325 (15%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD-------HE 53
MSAI++ L+ G ++ ++ LYGGT LL F N V +D
Sbjct: 108 MSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFR---NFGVGAVGFADGLSEAAIGA 164
Query: 54 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA------HDKGVTVVVDNTF-SPLV 106
+A +GR ++ E+ +NPT ++ ++ + R+A + DNT P+
Sbjct: 165 AAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF 224
Query: 107 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 166
P GAD+ V+S++K++ G +D++AGAV G L+ + L + A +G ++P
Sbjct: 225 QKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRAL-RSA---IGTQLDPHSC 280
Query: 167 FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL--------KSM 218
+ L + L LRM+ A A L DHP E L S
Sbjct: 281 WMLGRSLETLVLRMERANRNARAVAEF------------LRDHPKVEKLHYLPFLDPDSA 328
Query: 219 ANKEY-----GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 272
Y G G D++ + A R +N LQ + +AVSLG E+L S S
Sbjct: 329 YGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFK----LAVSLGGTESLASHPASM 384
Query: 273 TSSELNAEEKALAGISAGLVRMSVG 297
T S + A+ + G+ +R+S+G
Sbjct: 385 THSGVPADVRERIGVLESTIRLSIG 409
|
Length = 427 |
| >gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-29
Identities = 88/303 (29%), Positives = 149/303 (49%), Gaps = 40/303 (13%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI + + G VVA R LYGG+ +F + ++ E A +
Sbjct: 79 MSAIV-LAFSVFPVGSKVVAVRDLYGGSF----RWFNQQEKEGRFHFTYANTEEELIAAI 133
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ T ++Y E+ +NP + +I ++++LAH KG V+VDNTF SP+ P LGAD+V+H
Sbjct: 134 EEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLH 193
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL---GPTMNPKVAFELSERIPHL 176
S +K++SG D++AG V V + ++L++ L G ++P ++ L + L
Sbjct: 194 SATKYLSGHNDVLAGVV------VTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTL 247
Query: 177 GLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234
LRM+ A +KK +VLY G GG++ +
Sbjct: 248 SLRMERSTANAQEVVAFLKKSPAVKEVLYTGK-------------------GGMISFKVA 288
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
E + ++N L+ F F A SLG E+L++ + T +++ AE + G++ L+R+
Sbjct: 289 DETRIPHILNSLK---VFTF-AESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRL 344
Query: 295 SVG 297
S+G
Sbjct: 345 SIG 347
|
Length = 364 |
| >gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 5e-29
Identities = 94/306 (30%), Positives = 157/306 (51%), Gaps = 28/306 (9%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+S+V L +G +VA +YGG+ LL+ PR+ + V+ ++ + V +AI
Sbjct: 158 MAALSAV-THLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTNLDEVAAAI- 214
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT-FSPLVLSPARLGADVVVH 119
+TK+++ ES +NP +++I +++ +AH +G V+VDN+ SP++ P LGAD+V+H
Sbjct: 215 GPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMH 274
Query: 120 SISKFISGGADIIAG--AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
S +KFI+G +D++AG AV G L + L G + P + I +
Sbjct: 275 SATKFIAGHSDVMAGVLAVKG-EKLAKEVYFLQNSE----GSGLAPFDCWLCLRGIKTMA 329
Query: 178 LRMKEHCHRALIFAR------RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231
LR+++ A A R+K KV Y GL DHP H L S A G G +
Sbjct: 330 LRIEKQQENARKIAMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSF 382
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291
+ L +L ++ +AVS G ++L+S + + + AE + G++ L
Sbjct: 383 ITGSVA----LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438
Query: 292 VRMSVG 297
VR+S G
Sbjct: 439 VRISAG 444
|
Length = 464 |
| >gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 3e-27
Identities = 90/329 (27%), Positives = 156/329 (47%), Gaps = 41/329 (12%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD--ISDHEMVNSAI 59
+AI ++ +CSSG H++ + T+YGGT L R I TF + ++ E+V A+
Sbjct: 87 AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSL-RKLGIDVTFFNPNLTADEIV--AL 143
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVV 118
+TK++Y ES+ NP + V N E S A + V +VDNT +P + GA+++V
Sbjct: 144 ANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIV 203
Query: 119 HSISKFISGGADIIAGAVCGPANL-------------------VNSMMDLHQGALML--- 156
HS +K+I G A + G V N V+ + + A ++
Sbjct: 204 HSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKAR 263
Query: 157 ------LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK--VLYPGLED 208
G M+P A+ + + L LRM+ H AL A+ + V YPGL+
Sbjct: 264 VQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDS 323
Query: 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268
+ ++ L + K G G+L ++ +A + ++ N + + + T +
Sbjct: 324 NENYSLAQKYLKK--GASGVLTFGIKGGLEAAK--EFIAN-VKLATLVTHVADARTCVIH 378
Query: 269 SGSSTSSELNAEEKALAGISAGLVRMSVG 297
S+T +L+AE++ LAG+++ L+R+SVG
Sbjct: 379 PASTTHRQLSAEDQRLAGVTSDLIRLSVG 407
|
Length = 432 |
| >gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 93/324 (28%), Positives = 136/324 (41%), Gaps = 44/324 (13%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AI++VL L G VV Y AL + +T M +A+
Sbjct: 75 MAAITAVLRALLRPGDTVVVPADGYYQVRALAREYL-APLGVTVREA--PTAGMAEAAL- 130
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
++ E+ SNP L V ++ L+ AH G +VVDNT +PL P LGAD+VV
Sbjct: 131 -AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVA 189
Query: 120 SISKFISGGADIIAG--AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
S +K ++G +D++ G A P +M + +L G P A+ + LG
Sbjct: 190 SDTKALTGHSDLLLGYVAGRDPE-----LMAAVERWRLLAGAIPGPFEAWLAHRSLGTLG 244
Query: 178 LRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHEL-LKSMANKEYGFGGLLCLD 232
LR C AL A + G++ YPGL P HE+ + M FGGL+ +
Sbjct: 245 LRFARQCANALAVAELLAGHPAVRGVR--YPGLPGDPAHEVAARQMR----RFGGLVSFE 298
Query: 233 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG--ISAG 290
+ A R + + A S G G TS A+ +A G + G
Sbjct: 299 LADAAAAERFVAASRLVVA----ATSFG---------GVHTS----ADRRARWGDAVPEG 341
Query: 291 LVRMSVGYLGTLDQRWSQFEKALS 314
VR+S G T D + E+AL
Sbjct: 342 FVRLSCGIEDTDDL-VADLERALD 364
|
Length = 366 |
| >gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 3e-23
Identities = 72/309 (23%), Positives = 148/309 (47%), Gaps = 24/309 (7%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
++A+++ ++ +G HV+ + Y T R + T+ D E + + ++
Sbjct: 75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYYDPLIGEDI-ATLI 132
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 119
Q TKVL+ E+ S+ T + +IP +++ A + G+ +++DNT++ L+ P G D+ +
Sbjct: 133 QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQ 192
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
+ +K++ G +DI+ G V A + + + L+G ++ A+ + LG+R
Sbjct: 193 AGTKYLVGHSDIMIGTVVANARTWDQLRE----HSYLMGQMVDADDAYTTLRGLRTLGVR 248
Query: 180 MKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLKSMANKEY-GFGGLLCLDME-- 234
+K+H +L A+ + + +VL+P L P HE K +++ G GL ++
Sbjct: 249 LKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWK----RDFSGSSGLFSFVLQRL 304
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
T+++ + +++LQ + + S G YE+L C EL + L+R+
Sbjct: 305 TQKQVHAFLDHLQLFG----LGYSWGGYESLALC----NQPELGHRPNIKRNLEGPLIRV 356
Query: 295 SVGYLGTLD 303
+G D
Sbjct: 357 HIGLENVDD 365
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377 |
| >gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-20
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI-- 59
+AIS+ L+ +G H++ + Y T L I TT+ D M+ I
Sbjct: 87 AAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGF-GIETTYYD----PMIGEGIRE 141
Query: 60 -VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVV 117
++ TKVL+ ES + T+ V ++P LSR+AH+ + V++DNT+ SP+ P +G D+
Sbjct: 142 LIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDIS 201
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
+ + +K+I G +D++ G A D + L+G +P + + LG
Sbjct: 202 IQAATKYIVGHSDVMLGT----ATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLG 257
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLK 216
+R+ +H AL A + V +P E P HE K
Sbjct: 258 VRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFK 298
|
Length = 394 |
| >gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 3e-17
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI- 59
++AIS V L +G V+ YG + + R IT F D ++ + I
Sbjct: 90 LAAISLVYFGLVKAGDDVLIPDNAYG-PNRDHGEWLARDFGITVRFYD----PLIGAGIA 144
Query: 60 --VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADV 116
+Q T++++ E+ + T+ V ++P ++ A +GV +DNT+S L P G D+
Sbjct: 145 DLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDI 204
Query: 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLH---QGALMLLGPTMNPKVAFELSERI 173
V +++K+ SGG+D++ GA + + +LH + A M LG ++ + +
Sbjct: 205 SVQALTKYQSGGSDVLMGAT------ITADAELHAKLKLARMRLGIGVSADDCSLVLRGL 258
Query: 174 PHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHE 213
P L +R+ H AL A +K VL+P L D P H
Sbjct: 259 PSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHA 300
|
Length = 394 |
| >gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-16
Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 21/225 (9%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDISDHE-MVNS 57
++A++ + S G H + ++Y T HF C+ + V++ ++ + +
Sbjct: 89 LAAVTVPFLGFLSPGDHALIVDSVYYPTR----HF----CDTMLKRLGVEVEYYDPEIGA 140
Query: 58 AI---VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLG 113
I ++ TKV++ E+ + T + +IP ++ AH G V++DNT+ +PL P G
Sbjct: 141 GIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFG 200
Query: 114 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 173
D+ +H+ +K+ SG +DI+ G V +++ H LG P +++ +
Sbjct: 201 VDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLGLCAGPDDTYQILRGL 256
Query: 174 PHLGLRMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLK 216
+G+R++ H AL AR + + +VL+P L P HE+ K
Sbjct: 257 RTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWK 301
|
Length = 395 |
| >gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 25/275 (9%)
Query: 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ 61
+A+++ ++ G HV+ T Y T + + +TTT+ D + + ++Q
Sbjct: 88 AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKL-GVTTTWFDPLIGADI-AKLIQ 145
Query: 62 GRTKVLYFESISNPTLAVANIPELSRLAHDKG--VTVVVDNTFSPLVLSPA-RLGADVVV 118
TKV++ ES + T+ V ++P + +++DNT++ VL A G D+ +
Sbjct: 146 PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISI 205
Query: 119 HSISKFISGGADI-----IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 173
+ +K++ G +D +A A C NS L+G ++ A+ S +
Sbjct: 206 QAGTKYLVGHSDAMIGTAVANARCWEQLRENS---------YLMGQMVDADTAYMTSRGL 256
Query: 174 PHLGLRMKEHCHRALIFARRM-KKLGLKVLY-PGLEDHPHHELLKSMANKEYGFGGLLCL 231
LG+R+++H +L A + + + + P L HE K G GL
Sbjct: 257 RTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFT---GSSGLFSF 313
Query: 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266
++ + +L NYL N++ F MA S G +E+L+
Sbjct: 314 VLKKKLTDEQLANYLDNFSLFS-MAYSWGGFESLI 347
|
Length = 395 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 26/244 (10%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
A+S +L L + G V+ Y G A L + + D E++ +A
Sbjct: 71 ALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAK- 129
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLV----LSPARLG 113
+TK+LY + +NPT AV + EL L A G+ ++ D ++ LV PA
Sbjct: 130 TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALAL 189
Query: 114 AD-----VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 168
D +V+ S SK G + G + P + + T++ A
Sbjct: 190 LDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAA 248
Query: 169 -LSERIPHLGLRMKEHCHRALIFARRMKKLGLKV---------LYPGLEDHPHHELLKSM 218
L + HL + + R +K+LG V L+ L + E L+ +
Sbjct: 249 ALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERL 308
Query: 219 ANKE 222
+
Sbjct: 309 LLEA 312
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 26/118 (22%)
Query: 53 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH---DKGVTVVVDNTFSPLV--- 106
E + +AI +TK + S +NPT AV + EL + + + ++ D + LV
Sbjct: 154 EDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDG 212
Query: 107 --------LSPARLGADVVVHSISKFISGGADIIAG-----AVCGPANLVNSMMDLHQ 151
L+ AR + ++S SK + G V P L+ ++ L
Sbjct: 213 AEHPSILELAGARDRT-ITINSFSKTYG-----MTGWRIGWVVGPPEELIAALRKLKS 264
|
Length = 393 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD--NTFSPLVLSPARLGADVV 117
+ +TK++ +SN T V + E++ LAH+ G V+VD L + LG D +
Sbjct: 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFL 218
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSM 146
S K++ G I G + L+ +
Sbjct: 219 AFSGHKWLLGPTGI--GVLYVRKELLEEL 245
|
Length = 405 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 58 AIVQGRTKVLYFESISNPTLAVANIPELSRLA-----HDKGVTVVVDNTFSPLVLSPARL 112
A + +TK + S +NPT AV N EL +A HD + V+ D ++ L
Sbjct: 149 AAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHD--LIVLSDEIYAELTYD---- 202
Query: 113 GADVVVHSISK------FISGGADIIA------GAVCGPANLVNSMMDLHQGALMLLGPT 160
A SI ISG + A G + P +M+ +HQ ++M PT
Sbjct: 203 EAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMM-CAPT 261
Query: 161 MNPKVAFELSERIPHLGLRMKE-HCHRALIFARRMKKLGLKVLYPG 205
M A E +RM++ + R F ++GL PG
Sbjct: 262 MAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG 307
|
Length = 378 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHS 120
+TK++ +SN V + E+++LAH G V+VD + + + L D V S
Sbjct: 159 KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFS 218
Query: 121 ISKFISGGADIIAGAVCGPANLVNSM 146
K + G I G + G L+ M
Sbjct: 219 GHK-MYGPTGI--GVLYGKEELLEQM 241
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 61 QGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSPLVLSPARLGA--- 114
KV+ S NPT VA + EL LA + + ++VD ++ V A
Sbjct: 140 TEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRA 199
Query: 115 -------DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150
+VV S SK G A G + G A +++ + L
Sbjct: 200 LLAEGPNLLVVGSFSKAF-GLAGWRVGYILGNAAVISQLRKLA 241
|
Length = 357 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD--NTFSPLVLSPARLGADVVVHS 120
RTK++ +SN T V + E+ +LAH+ G VVVD + LG D + S
Sbjct: 139 RTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFS 198
Query: 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 162
K G I G + G +L+ + L G M+ ++
Sbjct: 199 GHKLY-GPTGI--GVLYGRRDLLEKLPPLLGGGGMIDTVSLQ 237
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 100.0 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 100.0 | |
| PLN02242 | 418 | methionine gamma-lyase | 100.0 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 100.0 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 100.0 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 100.0 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 100.0 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 100.0 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 100.0 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 100.0 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 100.0 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 100.0 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 100.0 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 100.0 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 100.0 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 100.0 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 100.0 | |
| PLN02509 | 464 | cystathionine beta-lyase | 100.0 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 100.0 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 100.0 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 100.0 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 100.0 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 100.0 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 100.0 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 100.0 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.98 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.98 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.97 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.97 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.97 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK07324 | 373 | transaminase; Validated | 99.97 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.97 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.97 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.97 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.97 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.97 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.97 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.97 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.97 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.97 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.97 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.97 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.97 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.97 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.97 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.97 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.97 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.97 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.97 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.96 | |
| PLN02187 | 462 | rooty/superroot1 | 99.96 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.96 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.96 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.96 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.96 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.96 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.96 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.96 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.96 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.96 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.96 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.96 | |
| PLN02656 | 409 | tyrosine transaminase | 99.96 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.96 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.96 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.96 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.96 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.96 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.96 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.96 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.96 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.95 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.95 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.95 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.95 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.95 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.95 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.95 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.95 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.95 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.95 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.95 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.95 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.94 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.94 | |
| PLN02368 | 407 | alanine transaminase | 99.94 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.94 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.94 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PLN02231 | 534 | alanine transaminase | 99.94 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.94 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.94 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.94 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.94 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.94 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.94 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.94 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.94 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.93 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.93 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.93 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.93 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.93 | |
| PLN02397 | 423 | aspartate transaminase | 99.93 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.92 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.92 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.92 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.92 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.92 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.92 | |
| PLN02651 | 364 | cysteine desulfurase | 99.92 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.92 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.92 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.92 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.92 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.91 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.91 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.91 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.91 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.9 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.9 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.9 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.9 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.9 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.9 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.9 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.9 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.89 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.89 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.89 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.89 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.88 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.88 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.88 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.88 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.88 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.88 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.88 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.88 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.87 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.86 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.86 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.86 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.86 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.85 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.85 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.85 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.84 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.84 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.84 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.83 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.83 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.83 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.83 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.83 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.83 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.83 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.83 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.82 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.82 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.82 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.82 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.82 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.81 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.8 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.8 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.8 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.79 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.79 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.79 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.79 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.78 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.77 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.77 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.77 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.76 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.76 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.76 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.75 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.75 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.74 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.74 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.74 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.74 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.74 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.73 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.73 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.73 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.72 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.72 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.72 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.71 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.71 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.71 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.7 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.7 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.7 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.7 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.7 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.69 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.69 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.69 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.68 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.67 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.67 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.67 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.66 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.66 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.65 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.65 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.64 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.64 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.64 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.64 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.62 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.62 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.61 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.61 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.6 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.6 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.6 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.59 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.59 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.59 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.58 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.58 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.58 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.57 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.57 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.57 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.56 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.55 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.55 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.54 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.53 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.52 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.52 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.51 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.5 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.49 | |
| PLN02263 | 470 | serine decarboxylase | 99.49 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.49 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.47 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.47 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.47 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.45 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.45 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.44 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.44 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.43 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.42 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.42 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.42 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.42 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.41 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.4 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.4 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.4 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.4 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.39 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.39 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.39 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.38 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.37 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.36 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.36 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.36 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.35 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.35 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.35 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.34 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.34 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.34 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.34 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.33 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.33 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.32 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.32 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.31 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.31 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.31 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.3 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.3 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.3 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.29 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.29 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.29 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.29 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.28 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.27 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.26 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.26 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.26 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.25 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.25 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.24 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.23 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.19 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.19 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.16 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.16 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.15 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.14 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.11 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.1 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.1 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.09 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.08 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.06 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.05 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.0 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.95 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.91 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.91 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.83 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.83 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.68 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.52 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.46 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.34 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.34 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.28 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.16 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.14 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.07 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.8 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.71 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 94.7 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 82.7 | |
| COG0296 | 628 | GlgB 1,4-alpha-glucan branching enzyme [Carbohydra | 80.44 |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=350.31 Aligned_cols=304 Identities=39% Similarity=0.646 Sum_probs=279.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++..|++....+....++ +|+++.+++..+.+++++++..++|++|++++|+||+..+.
T Consensus 88 maAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~-~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~ 166 (396)
T COG0626 88 MAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQK-FGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVP 166 (396)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHh-cCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccc
Confidence 78999999999999999999999999999999998888 99999999988888888888336999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|++++||+++ +++.+.|+++|+|+++.|.+|+++|++..++|.++++.+ +.+.+..... ...|
T Consensus 167 DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~---~~~G 243 (396)
T COG0626 167 DIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQR---ANTG 243 (396)
T ss_pred cHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHH---hhcC
Confidence 9999999999999999999999 778999999999999999999999999999998876554 5555533333 1478
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++|+|.++.++++ |.|++++|++++.
T Consensus 244 ~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~---g~gg~~Sf~l~~~ 320 (396)
T COG0626 244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMT---GYGGLFSFELKNE 320 (396)
T ss_pred CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcC---CCceEEEEEeCCh
Confidence 99999999999999999999999999999999999999987 899999999999999999887 5899999999965
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.+. ++.|+|+.++++++|..+.|...+...+...|+.++.||+|+| .|+.++++++|+++|+++
T Consensus 321 ~~~~~f~~~L~l~~----~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG-lEd~eDLi~Dl~~Al~~~ 395 (396)
T COG0626 321 EAAKKFLDSLKLFK----LAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-LEDVEDLIADLEQALAKA 395 (396)
T ss_pred HHHHHHHHhCCccE----EeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHhh
Confidence 77999999999744 6899999999999999999999999999999999999999999 999999999999999875
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=350.47 Aligned_cols=305 Identities=30% Similarity=0.479 Sum_probs=274.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 78 ~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~i-~~~tklV~lesP~NPtG~v~ 155 (388)
T PRK08861 78 TSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK-GDFKVQFVDQSDAAALDAAL-AKKPKLILLETPSNPLVRVV 155 (388)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCccc
Confidence 46889999999999999999999999877766544444 68999999888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .++...|.+.|+|++++|+||+++|++..++|+++. ++++.+.++.... ..|
T Consensus 156 dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~----~~G 231 (388)
T PRK08861 156 DIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN----CIG 231 (388)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh----ccC
Confidence 9999999999999999999999 556678888999999999999999987665799876 4567777776665 678
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.+++++++ |.|++++|+++ +
T Consensus 232 ~~~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~gg~~sf~~~~~ 308 (388)
T PRK08861 232 ATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQS---GFGSMLSFEFAGS 308 (388)
T ss_pred CCCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCC---CCCceEEEEeCCC
Confidence 88999999999999999999999999999999999999987 899999999999999999875 68999999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.+. +++|+|+.++++++|....|..+++..+...|+.++.||+|+| .|+.++++++|+++|++
T Consensus 309 ~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-lE~~~dli~Dl~~al~~ 383 (388)
T PRK08861 309 FEQLKVFVKALALFS----LAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG-LEDAQDLIADLDQAFAK 383 (388)
T ss_pred HHHHHHHHhcCCcce----EccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 677889999999744 5899999999999999999999999999999999999999999 99999999999999999
Q ss_pred hhhc
Q 020548 316 MQDS 319 (324)
Q Consensus 316 ~~~~ 319 (324)
+++.
T Consensus 384 ~~~~ 387 (388)
T PRK08861 384 AAEA 387 (388)
T ss_pred HHhc
Confidence 8764
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=348.83 Aligned_cols=300 Identities=41% Similarity=0.674 Sum_probs=262.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|.+....++...++ +|+++.+++..|++++++++ ++++++|++++|.||+..+.
T Consensus 80 maAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~-~gv~v~~~d~~d~~~l~~~l-~~~t~~v~~EspsNP~l~v~ 157 (386)
T PF01053_consen 80 MAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR-FGVEVTFVDPTDLEALEAAL-RPNTKLVFLESPSNPTLEVP 157 (386)
T ss_dssp HHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH-TTSEEEEESTTSHHHHHHHH-CTTEEEEEEESSBTTTTB--
T ss_pred HHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc-cCcEEEEeCchhHHHHHhhc-cccceEEEEEcCCCcccccc
Confidence 68899999999999999999999999999999888777 89999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcC-CEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC--hhHHHHHHHhhhhhhhc
Q 020548 81 NIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANLVNSMMDLHQGALML 156 (324)
Q Consensus 81 ~~~~i~~l~~~~~-~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~--~~~~~~l~~~~~~~~~~ 156 (324)
|+++|+++|+++| ++++||+++ .++.++|+++|+|+++.|++|+++|++..++|.++.+ +++.+.++.... .
T Consensus 158 Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~----~ 233 (386)
T PF01053_consen 158 DLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRR----L 233 (386)
T ss_dssp -HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHH----H
T ss_pred cHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhh----h
Confidence 9999999999998 999999999 6678899999999999999999999999999999865 478888877766 7
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|..+.+..+++++++++++..|++++.+++.++.++|++++. ++.+|+++++|+|.++.++.+ |.|++++|+++
T Consensus 234 ~G~~~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~ggl~sf~l~ 310 (386)
T PF01053_consen 234 LGATLSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMS---GGGGLLSFELK 310 (386)
T ss_dssp HT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCS---SCTSEEEEEES
T ss_pred cCccchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeeccc---ccCceeEEEec
Confidence 7899999999999999999999999999999999999999987 799999999999999999987 57779999999
Q ss_pred CHH-HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 235 TEE-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 235 ~~~-~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
+.. .+.+|++.++.+. .++|+|+.++++++|....|...+++.+...|++++.||+|+| .|+.++++++|++||
T Consensus 311 ~~~~~~~~f~~~l~l~~----~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG-lEd~~dLi~Dl~~AL 385 (386)
T PF01053_consen 311 GGEEAARRFLDALKLFS----IAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG-LEDPDDLIADLEQAL 385 (386)
T ss_dssp SHHHHHHHHHHH-SSSE----ESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE---SS-HHHHHHHHHHHH
T ss_pred cchhhhHhHHhhhhhHh----hhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec-cCCHHHHHHHHHHhc
Confidence 764 8999999999743 5899999999999999999999999999999999999999999 999999999999998
Q ss_pred H
Q 020548 314 S 314 (324)
Q Consensus 314 ~ 314 (324)
+
T Consensus 386 ~ 386 (386)
T PF01053_consen 386 E 386 (386)
T ss_dssp H
T ss_pred C
Confidence 6
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=347.92 Aligned_cols=314 Identities=84% Similarity=1.288 Sum_probs=278.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC-CceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~ 79 (324)
|+|+..++.+++++||+|+++.|.|+++...+.....+..|+++.+++..|++++++++ ++ ++++|++++|+||||.+
T Consensus 101 ~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i-~~~~tklV~lesp~NPtG~v 179 (418)
T PLN02242 101 MSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAV-VPGKTKVLYFESISNPTLTV 179 (418)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhc-CcCCCEEEEEecCCCCCCcc
Confidence 46888899999999999999999999998877555444479999999888999999999 66 59999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
.|+++|+++|+++|+++|+|++|..+.+++..+++|++++|+||+++++|++++||+++++++++.+.....+.....|.
T Consensus 180 ~dl~~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~ 259 (418)
T PLN02242 180 ADIPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGP 259 (418)
T ss_pred cCHHHHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCC
Confidence 99999999999999999999999777777777899999999999999999887799999999998888764421224567
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 239 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 239 (324)
.+.++.+++.+.++.++..+++++.++++++.++|++++.++.+|+++++|.|.+++++.++..|.|++++|++.+.+.+
T Consensus 260 ~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~ 339 (418)
T PLN02242 260 TMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERA 339 (418)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHH
Confidence 78888888888888899999999999999999999999889999999999999999999865557899999999877789
Q ss_pred HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC-HHHHHHHHHHHHHhh
Q 020548 240 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFEKALSRM 316 (324)
Q Consensus 240 ~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~-~~~~~~~l~~~l~~~ 316 (324)
.+|+++++.++.+..+++|+|++++++++|....|..+++..+...|++++.||+|+| .|+ .++++++|+++|++.
T Consensus 340 ~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~~dli~dl~~al~~~ 416 (418)
T PLN02242 340 NRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG-YTGTLEQRWSQFEKALSAM 416 (418)
T ss_pred HHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-CCCCHHHHHHHHHHHHHHh
Confidence 9999999965333336899999999999999999999999999899999999999999 995 999999999999875
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=346.22 Aligned_cols=304 Identities=36% Similarity=0.633 Sum_probs=274.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|+|+++...+....+. .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 89 ~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~d~e~l~~~i-~~~tklV~ie~p~NPtg~v~ 166 (398)
T PRK08249 89 MAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPR-MGVDVTLCETGDHEQIEAEI-AKGCDLLYLETPTNPTLKIV 166 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhh-CCeEEEEcCCCCHHHHHHhc-CCCCeEEEEECCCCCCCccC
Confidence 46888888888999999999999999988777665555 89999999988999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++|+ ++...+...++|++++|+||+++++|.+++|++++++++++.++.... ..+.
T Consensus 167 dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~----~~g~ 242 (398)
T PRK08249 167 DIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE----INGA 242 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH----hcCC
Confidence 99999999999999999999994 444556677899999999999999888878999999999998887766 6678
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..+++++++++.+..+++++.+++..+.++|++++. ++.+|+++++|.|.+++++.+ |.|++++|+++ +.
T Consensus 243 ~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~sf~~~~~~ 319 (398)
T PRK08249 243 TMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMR---GFGGILSFVLKGGM 319 (398)
T ss_pred CCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEEEcCCH
Confidence 8899999999999999999999999999999999999987 899999999999999999875 68999999997 55
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|...+++.+...|++++.||+|+| .|+.++++++|+++|+.+
T Consensus 320 ~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 394 (398)
T PRK08249 320 DTVKRLLPKLRYAH----RAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG-IEDTEDLIADLEQAFAHL 394 (398)
T ss_pred HHHHHHHHhCCcce----EccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHHh
Confidence 67889999999743 5899999999999999999999999999999999999999999 999999999999999987
Q ss_pred hh
Q 020548 317 QD 318 (324)
Q Consensus 317 ~~ 318 (324)
+.
T Consensus 395 ~~ 396 (398)
T PRK08249 395 ES 396 (398)
T ss_pred hh
Confidence 53
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=343.68 Aligned_cols=299 Identities=26% Similarity=0.431 Sum_probs=266.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++|.|+++...+....++ +|+++.+++..+.+++++++ ++++|+|++++|+||+|.+.
T Consensus 86 ~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~-~Gi~v~~v~~~~~e~l~~~l-~~~TklV~lespsNPtg~v~ 163 (394)
T PRK09028 86 AAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG-FGIETTYYDPMIGEGIRELI-RPNTKVLFLESPGSITMEVQ 163 (394)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh-cceEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCCcHH
Confidence 57889999999999999999999999998877655555 89999998877888999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++||++|+++++|++| .++.+.|.++|+|+++.|++||++|++..++|+++.++++++.+..... ..|.
T Consensus 164 dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~----~~G~ 239 (394)
T PRK09028 164 DVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSY----LMGQ 239 (394)
T ss_pred HHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH----hcCC
Confidence 9999999999999999999999 6667889999999999999999999999999999888888777776555 6688
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--C
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--T 235 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~ 235 (324)
.+++..+++++++++++..|++++.+++..+.++|++++. ++.+|+++++|+|.++.++.+ |.|++++|+++ +
T Consensus 240 ~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf~l~~~~ 316 (394)
T PRK09028 240 CTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFS---GSNGLFSFVLKQGD 316 (394)
T ss_pred CCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhcc---CCCceEEEEECCCC
Confidence 9999999999999999999999999999999999999986 899999999999999999875 67899999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....+... ....++.++.||||+| .|+.++++++|+++|++
T Consensus 317 ~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svG-lEd~~dLi~Dl~~Al~~ 387 (394)
T PRK09028 317 PKAVTALVEGMQHFK----MGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIG-LEDVDDLIADLEAGFER 387 (394)
T ss_pred HHHHHHHHHhCCcce----EecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 567889999999744 68999999999999976554322 2235677789999999 99999999999999987
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+.
T Consensus 388 ~~ 389 (394)
T PRK09028 388 YN 389 (394)
T ss_pred HH
Confidence 75
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=325.04 Aligned_cols=307 Identities=34% Similarity=0.571 Sum_probs=277.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++..++++||+|+.++.-|++....+...+++ +|+++++++.+|++.+++++ +++||+|++++..||.+.+.
T Consensus 87 ~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~-~Gi~v~fvd~~d~~~~~~aI-~~nTkavf~EtigNP~~~v~ 164 (426)
T COG2873 87 QAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKR-LGIEVRFVDPDDPENFEAAI-DENTKAVFAETIGNPGLDVL 164 (426)
T ss_pred hHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHh-cCcEEEEeCCCCHHHHHHHh-CcccceEEEEeccCCCcccc
Confidence 78999999999999999999999999999999888787 99999999999999999999 99999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh--hHHH-------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA--NLVN------------- 144 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~--~~~~------------- 144 (324)
|++.|+++||++|+++|||+++ .++...|.++|+|+|+.|++|++||+|-.+||.++-.- +|..
T Consensus 165 Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~ 244 (426)
T COG2873 165 DIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPS 244 (426)
T ss_pred CHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCcc
Confidence 9999999999999999999999 66888999999999999999999999999988886332 2221
Q ss_pred --------------HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 145 --------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 145 --------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
.+.+.+....+..|..+++..+++++++++.+..|++|+.+|+.++.++|++++. ++.+|++++
T Consensus 245 YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~ 324 (426)
T COG2873 245 YHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLAS 324 (426)
T ss_pred ccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCC
Confidence 0001111145678899999999999999999999999999999999999999987 899999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+++|.+.++|..+ |.|++++|.+++ .+...+|++.++... .....|...++++||++..|.-++++++.+.|+
T Consensus 325 ~~~h~la~kyl~~--g~g~vltF~~kgg~ea~~~fi~~l~L~s----~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv 398 (426)
T COG2873 325 HPYHALAKKYLPK--GAGAVLTFGVKGGYEAGKKFIDALKLFS----HLANIGDARSLVIHPASTTHRQLSEEEQAAAGV 398 (426)
T ss_pred CcchhHHHhhccC--CCceEEEEEecChHHHHHHHHHHHHHHH----hhccccccceeEecCcccchhcCCHHHHHhcCC
Confidence 9999999999875 678899999994 488899999999633 466899999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++.||+|+| .|+.++++.+|+++|+++
T Consensus 399 ~~~~IRlSVG-IEd~~DiiaDl~qAl~~~ 426 (426)
T COG2873 399 TPDLIRLSVG-IEDIDDIIADLEQALEAA 426 (426)
T ss_pred CCCcEEEEec-cCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999763
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=339.84 Aligned_cols=304 Identities=30% Similarity=0.472 Sum_probs=269.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.++++|||+|++++|+|+++...+..+... .++++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 77 ~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~l-~~~tklV~l~sP~NPtG~v~ 154 (386)
T PRK08045 77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPLLRVV 154 (386)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-CCeEEEEeCCCCHHHHHHhc-ccCCeEEEEECCCCCCCEec
Confidence 46888889899999999999999999877777655544 56788888877999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....|...++|++++|++|+++|++..++|+++. ++++.+.+..... ..+
T Consensus 155 di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~----~~g 230 (386)
T PRK08045 155 DIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN----NIG 230 (386)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 444567788899999999999999877655688865 6778888876655 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.+++++.+ |.|++++|+++ +
T Consensus 231 ~~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~---g~g~~~s~~~~~~ 307 (386)
T PRK08045 231 VTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFELDGD 307 (386)
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCceEEEEecCc
Confidence 77889999999999999999999999999999999999987 899999999999999999874 68999999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.|+.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 308 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 308 EQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFRA 382 (386)
T ss_pred HHHHHHHHHhcccee----EeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 566789999999743 5899999999999999999999999988889999999999999 99999999999999998
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
+.+
T Consensus 383 ~~~ 385 (386)
T PRK08045 383 ANK 385 (386)
T ss_pred hhc
Confidence 753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=341.71 Aligned_cols=303 Identities=31% Similarity=0.535 Sum_probs=269.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|+++...+....++ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 90 ~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~ai-~~~tklV~lesp~NptG~v~ 167 (398)
T PRK07504 90 MAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR-YGIESTLVDGLDLDNWEKAV-RPNTKVFFLESPTNPTLEVI 167 (398)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCcEec
Confidence 35676777778899999999999999988777655555 79999999888999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....+.+.++|+++.|+||+++++|+++||+++++++++. .++.... ..|
T Consensus 168 dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~----~~g 243 (398)
T PRK07504 168 DIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR----HTG 243 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHH----HhC
Confidence 9999999999999999999999 455567777899999999999999999998788888877664 3443333 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..++.++++++.+..+++++.+++..+.++|++++. ++.+|+++++|.|.+++++.+ |.|++++|+++ +
T Consensus 244 ~~~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 320 (398)
T PRK07504 244 PSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMT---GGSTLVAFELKGG 320 (398)
T ss_pred CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCC---CCccEEEEEeCCC
Confidence 78999999999999999999999999999999999999975 799999999999999999875 67999999996 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|..+.|..++++.+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 321 ~~~~~~~~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~ 395 (398)
T PRK07504 321 KEAAFRFLNALKIVR----ISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-LEDTDDLIEDLAAALKK 395 (398)
T ss_pred HHHHHHHHHhCCcce----ecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHh
Confidence 677889999999744 5899999999999999999999999999999999999999999 99999999999999987
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
++
T Consensus 396 ~~ 397 (398)
T PRK07504 396 VR 397 (398)
T ss_pred hh
Confidence 64
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=340.91 Aligned_cols=301 Identities=35% Similarity=0.621 Sum_probs=269.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++++.|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 86 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~ie~p~NptG~v~ 163 (390)
T PRK08133 86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFAR-FGIETTFVDLTDLDAWRAAV-RPNTKLFFLETPSNPLTELA 163 (390)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCCcC
Confidence 46888888888999999999999999888766555545 79999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++|+|++| .+....|...++|++++|+||+++++|.++||++++++++++.+..... ..+.
T Consensus 164 dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~----~~g~ 239 (390)
T PRK08133 164 DIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR----TAGP 239 (390)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHH----HhCC
Confidence 9999999999999999999998 4455667777999999999999999999988899999888877765554 5677
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..++.++++++.+..+++++.+++..+.++|++++. .+.+|.++++|+|.++.++.+ |.|++++|+++ +.
T Consensus 240 ~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~g~~~s~~l~~~~ 316 (390)
T PRK08133 240 TLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQK---GGGAIVSFEVKGGR 316 (390)
T ss_pred CCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCC---CCceEEEEEEcCCH
Confidence 8888888888889999999999999999999999999976 789999999999999999874 68999999997 56
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 317 ~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~ 390 (390)
T PRK08133 317 EAAWRVIDATRLIS----ITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVG-LEDVADIKADLARGLAA 390 (390)
T ss_pred HHHHHHHHhCCcce----EeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHhhC
Confidence 67889999999744 6899999999999999999999999999999999999999999 99999999999999863
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=338.40 Aligned_cols=303 Identities=32% Similarity=0.514 Sum_probs=268.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.++++|||+|+++.|.|++....+..+... .|+++..++..|++++++++ ++++++|++++|+||||.+.
T Consensus 85 ~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~l~~P~NPtG~v~ 162 (405)
T PRK08776 85 MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKK-GHFALITADLTDPRSLADAL-AQSPKLVLIETPSNPLLRIT 162 (405)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCccC
Confidence 46888999999999999999999999877666555444 78899999888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .+..+.|..+++|+++.|++|++++++..++|+++. ++++.+.+..... ..+
T Consensus 163 dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~----~~g 238 (405)
T PRK08776 163 DLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWAN----ALG 238 (405)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 445567778899999999999999887665688865 5677777766555 456
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++..+++++++.+++++.+|+..+.++|++++. ++.+|+++++++|.++.++.+ |.|++++|+++ +
T Consensus 239 ~~~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 315 (405)
T PRK08776 239 LTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQK---GFGAMLSFELEGG 315 (405)
T ss_pred CCCCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCC---CCceEEEEEEcCC
Confidence 56788888888889999999999999999999999999986 899999999999999999874 68999999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.+. +++|+|+.++++++|....|..++++.+...|++++.||||+| .|+.++++++|+++|++
T Consensus 316 ~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~al~~ 390 (405)
T PRK08776 316 EAAVRAFVDGLRYFT----LAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG-IESAEDLLIDLRAGLAR 390 (405)
T ss_pred HHHHHHHHHhCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHH
Confidence 566789999999744 6899999999999999999999999988889999999999999 99999999999999998
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+.
T Consensus 391 ~~ 392 (405)
T PRK08776 391 AE 392 (405)
T ss_pred hH
Confidence 74
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=326.44 Aligned_cols=303 Identities=39% Similarity=0.588 Sum_probs=281.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..+++.++.+|++|+..+.+|.++...++.+.++ +|++..+++.++++++++++ ++++++|++++|.||+..+.
T Consensus 102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~-~gie~~~vd~~~~~~~~~~i-~~~t~~V~~ESPsNPll~v~ 179 (409)
T KOG0053|consen 102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPK-FGGEGDFVDVDDLKKILKAI-KENTKAVFLESPSNPLLKVP 179 (409)
T ss_pred HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHH-hCceeeeechhhHHHHHHhh-ccCceEEEEECCCCCccccc
Confidence 67899999999999999999999999999999999997 99999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++||++|++++||+++ +++.++|+.+|+|+|+.|.+|+++|++..++|.++.+ +++..+++..+. ..|
T Consensus 180 DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~----~lg 255 (409)
T KOG0053|consen 180 DIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE----DLG 255 (409)
T ss_pred cHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH----Hhc
Confidence 9999999999999999999999 5568899999999999999999999999999999886 889999988887 889
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
+.+.+..++...+++.++..|++++.+++..++++|++.+. ++.+|+++++|+|..+.++.++. +|+++++.+...
T Consensus 256 ~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~--~G~l~~~~~~~~ 333 (409)
T KOG0053|consen 256 WCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGG--YGGLSSVIFGNE 333 (409)
T ss_pred CCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCC--cceEEEEEcCCH
Confidence 99999999999999999999999999999999999999987 79999999999999999998753 444656666678
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++... .+.|+|++++++++|+.++|.. +.+++...|++++.||+|+| .|+.++++++|.+||+.+
T Consensus 334 ~~a~kf~~~LK~~~----~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVG-iEd~~dL~~d~~~Al~~~ 407 (409)
T KOG0053|consen 334 EHAKKFYDALKLFT----KAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVG-IEDIEDLIKDFQQALEKA 407 (409)
T ss_pred HHHHHHHHhhhhhh----cccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEec-cCCHHHHHHHHHHHHHhh
Confidence 88999999999632 5899999999999999999998 99999999999999999999 999999999999999876
Q ss_pred h
Q 020548 317 Q 317 (324)
Q Consensus 317 ~ 317 (324)
.
T Consensus 408 ~ 408 (409)
T KOG0053|consen 408 K 408 (409)
T ss_pred c
Confidence 3
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-47 Score=340.50 Aligned_cols=308 Identities=34% Similarity=0.578 Sum_probs=267.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....+...+.+ .|+++++++..|++++++++ ++++++|++++|+||||.+.
T Consensus 89 ~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~-~Gv~v~~vd~~d~e~l~~ai-~~~tklV~l~sp~NPtG~v~ 166 (431)
T PRK08248 89 QAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK-LGITVKFVDPSDPENFEAAI-TDKTKALFAETIGNPKGDVL 166 (431)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh-CCEEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCCccc
Confidence 46788888888999999999999999887777655555 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH----------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------------- 143 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~---------------- 143 (324)
|+++|.++|+++|+++|+|++| .+....|.++++|+++.|++|+++++|.++||+++.+.+..
T Consensus 167 di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~ 246 (431)
T PRK08248 167 DIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPS 246 (431)
T ss_pred CHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccc
Confidence 9999999999999999999999 45566777889999999999999999999877776543210
Q ss_pred -------HHH------HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 144 -------NSM------MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 144 -------~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
+.+ ...........|..+++..+++++++++++..|++++.+++.++.++|++++. ++.+|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s 326 (431)
T PRK08248 247 YHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPS 326 (431)
T ss_pred cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCC
Confidence 100 00010112256788999999999999999999999999999999999999986 789999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+|+|.++.++.++ |.|++++|+++ +.+.+.+|+++++.++ +++|+|+.++++++|...+|..++++++...|+
T Consensus 327 ~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi 400 (431)
T PRK08248 327 HPSYELAKKYLPK--GQGAILTFGIKGGVEAGKKLIDSVKLFS----HLANVGDSKSLIIHPASTTHQQLSEEEQLAAGV 400 (431)
T ss_pred CccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCeeeeCCCcCccccCCHHHHHhcCC
Confidence 9999999998742 57899999997 5577889999999744 689999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+++.||||+| .|+.++++++|++||+.++
T Consensus 401 ~~~liRlsvG-lEd~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 401 TPGLVRLSVG-TEAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 9999999999 9999999999999998764
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=335.25 Aligned_cols=301 Identities=34% Similarity=0.518 Sum_probs=267.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++.|+|+++...+..+... .++++..++..|++++++++ ++++++|++++|+||||.+.
T Consensus 76 ~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~ai-~~~tklV~l~~p~NPtG~~~ 153 (382)
T TIGR02080 76 MSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK-GCFRVLFVDQGDEQALRAAL-AQKPKLVLIETPSNPLLRVV 153 (382)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCCEec
Confidence 57899999999999999999999999888777655444 67888888878999999999 78899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++++|++| .+....+...++|++++|+||++++++..++|+++. ++++.+.+..+.. ..|
T Consensus 154 dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~----~~g 229 (382)
T TIGR02080 154 DIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN----NLG 229 (382)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH----ccC
Confidence 9999999999999999999999 444566777789999999999998765533698855 6788888877766 668
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++++++.+..|++++.+++..+.++|++++. ++.+|.++++|.|.++.++.+ |.|++++|+++ +
T Consensus 230 ~~~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 306 (382)
T TIGR02080 230 VTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQK---GFGAMLSFELKGG 306 (382)
T ss_pred CCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEEecCc
Confidence 88999999999999999999999999999999999999987 799999999999999999864 68999999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....|..+++..+...|++++.||||+| .|+.++++++|+++|+.
T Consensus 307 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~dl~~dl~~al~~ 381 (382)
T TIGR02080 307 EQTVRRFLGGLSLFT----LAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG-LEDADDLIADLEQGLRA 381 (382)
T ss_pred HHHHHHHHHcCCcce----EeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 566789999999744 5899999999999999999999999988899999999999999 99999999999999974
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=333.79 Aligned_cols=298 Identities=21% Similarity=0.394 Sum_probs=263.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|.+....++..+++ +|+++.+++..|.+++++++ +++|++|++++|+||+|.+.
T Consensus 87 maAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~-~Gi~v~~vd~~d~~~l~~~l-~~~TrlV~~EtpsNp~~~v~ 164 (395)
T PRK08114 87 AAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK-LGVTTTWFDPLIGADIAKLI-QPNTKVVFLESPGSITMEVH 164 (395)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCEee
Confidence 67899999999999999999999999999888777777 89999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcC--CEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKG--VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~--~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++||++| ++++||+++ .++.++|.++|+|+++.|.+|+++|++..++|+++.++++++.++.... ..
T Consensus 165 DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~----~~ 240 (395)
T PRK08114 165 DVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSY----LM 240 (395)
T ss_pred cHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHH----hc
Confidence 9999999999984 999999999 6777999999999999999999999998888988888877777765555 67
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
|..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|+++.++.+ |.|++++|++++
T Consensus 241 G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~---g~gg~~sf~l~~ 317 (395)
T PRK08114 241 GQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFT---GSSGLFSFVLKK 317 (395)
T ss_pred cCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCC---CCceEEEEEecC
Confidence 889999999999999999999999999999999999999987 899999999999999999875 689999999974
Q ss_pred ---HHHHHHHHHHhhccccccccccccCCccceeccc--cccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 236 ---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS--GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
.+.+.+|++.++.++ +++|+|+.++++++| ....+.. .++ ..+..++.||+|+| .|+.++++++|+
T Consensus 318 ~~~~~~~~~f~~~l~l~~----~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvG-lEd~~DLi~Dl~ 388 (395)
T PRK08114 318 KLTDEQLANYLDNFSLFS----MAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIG-LEDVDDLIADLA 388 (395)
T ss_pred cccHHHHHHHHHhCCcce----eecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEec-cCCHHHHHHHHH
Confidence 577889999999744 699999999999854 3322222 221 23556799999999 999999999999
Q ss_pred HHHHhh
Q 020548 311 KALSRM 316 (324)
Q Consensus 311 ~~l~~~ 316 (324)
++|+++
T Consensus 389 ~Al~~~ 394 (395)
T PRK08114 389 AGFARI 394 (395)
T ss_pred HHHHhh
Confidence 999864
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=333.01 Aligned_cols=297 Identities=24% Similarity=0.427 Sum_probs=263.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|++++|.|+++...+....++ +|+++.+++..+.+++++++ +++||+|++++|+||++.+.
T Consensus 89 ~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~-~Gi~v~~vd~~~~e~l~~al-~~~TklV~lesPsNP~l~v~ 166 (395)
T PRK05967 89 LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR-LGVEVEYYDPEIGAGIAKLM-RPNTKVVHTEAPGSNTFEMQ 166 (395)
T ss_pred HHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHhc-CcCceEEEEECCCCCCCcHH
Confidence 57899999999999999999999999998877666666 89999999887788899999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++++|++| .++.+.|.++|+|+++.|++|+++|++..++|+++.++++++.+..... ..|.
T Consensus 167 dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~----~~G~ 242 (395)
T PRK05967 167 DIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG----TLGL 242 (395)
T ss_pred HHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH----HcCC
Confidence 9999999999999999999999 6667899999999999999999999999988988888877777765554 5688
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C-
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T- 235 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~- 235 (324)
.+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.++.++.+ |.|++++|+++ +
T Consensus 243 ~~~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf~l~~~~ 319 (395)
T PRK05967 243 CAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFS---GASGIFSFVLAAGP 319 (395)
T ss_pred CCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCC---CCceEEEEEEcCCC
Confidence 8999999999999999999999999999999999999986 899999999999999999875 68999999997 3
Q ss_pred ---HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 236 ---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
.+.+.+|+++++.+. +++|+|+.+++++++.. +...+...+..++.||+|+| .|+.++++++|+++
T Consensus 320 ~~~~~~~~~f~~~l~l~~----~~~slG~~~sLi~~~~~------~~~~~~~~~~~~~liRlSvG-lEd~~dLi~Dl~~A 388 (395)
T PRK05967 320 EKGKAKAHAFLDALEIFG----LGYSWGGYESLALHVKL------GDRTVAKAPYAGPVIRLQIG-LEDVPDLKADLERG 388 (395)
T ss_pred cccHHHHHHHHHhCCcce----EccCCCCcceeeeeCCC------ChhHhhhccCCCCeEEEEec-cCCHHHHHHHHHHH
Confidence 577899999999743 68999999999987432 22333334677789999999 99999999999999
Q ss_pred HHhhh
Q 020548 313 LSRMQ 317 (324)
Q Consensus 313 l~~~~ 317 (324)
|+.+.
T Consensus 389 l~~~~ 393 (395)
T PRK05967 389 FAAAS 393 (395)
T ss_pred HHhhh
Confidence 98764
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=335.89 Aligned_cols=299 Identities=35% Similarity=0.594 Sum_probs=268.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....+.....+ +|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 79 ~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~le~p~np~g~~~ 156 (380)
T TIGR01325 79 MSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPR-FGIEVSFVDPTDLNAWEAAV-KPNTKLVFVETPSNPLGELV 156 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHH-hCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCeee
Confidence 46788888888999999999999998877666555555 79999999988999999999 78899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++|+ ++...+.+.++|+++.|++|+++++|.++||++++++++++.++.... ..|.
T Consensus 157 dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~----~~g~ 232 (380)
T TIGR01325 157 DIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR----HTGP 232 (380)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH----hhCC
Confidence 99999999999999999999994 455677788999999999999999998888999999988888877655 5677
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
.+.+..++.+++++..+..+++++.+++.++.++|++++. ++.+|.++++|.|.+++++.. |.|++++|++++.+
T Consensus 233 ~~~p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~---g~g~~~s~~l~~~~ 309 (380)
T TIGR01325 233 AMSPFNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQS---GGGTVIGFDVADRA 309 (380)
T ss_pred CCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEECCHH
Confidence 7888888888899999999999999999999999999976 789999999999999999874 68999999998777
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
.+.+|++.++.++ +++|+|+.++++.+|....|..++++.+...|++++.||+|+| .|+.++++++|+++|
T Consensus 310 ~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al 380 (380)
T TIGR01325 310 AAWKVLDAVELVS----ITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVG-LEDVDDLIADLKRAL 380 (380)
T ss_pred HHHHHHHcCCcce----EcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHhhC
Confidence 7899999999744 6899999999999999999999999999899999999999999 999999999999985
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=334.19 Aligned_cols=304 Identities=36% Similarity=0.622 Sum_probs=269.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|+.+...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 84 ~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~~~~vd~~d~e~l~~~i-~~~tklV~le~p~Np~G~v~ 161 (391)
T TIGR01328 84 MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK-FGIQVDFINMAIPEEVKAHI-KDNTKIVYFETPANPTMKLI 161 (391)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhh-ccCCeEEEEECCCCCCCccc
Confidence 46788888888999999999999998877777665555 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++| .+....+...++|++++|++|+++++|.+++|++++++++++.++..... ...|.
T Consensus 162 dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~--~~~g~ 239 (391)
T TIGR01328 162 DMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIK--DMTGS 239 (391)
T ss_pred CHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999999999999 44455677789999999999999999988779999999988888754321 13466
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..+++.+.+++.+..++++..+++..+.++|++++. .+.+|+++++|+|.+++++++ +.|++++|+++ +.
T Consensus 240 ~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---~~g~~~s~~~~~~~ 316 (391)
T TIGR01328 240 VISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMR---MGGGMITFELKGGF 316 (391)
T ss_pred CCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEEEEeCCCH
Confidence 7888888888888999999999999999999999999986 789999999999999999886 57999999997 56
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.+. ++.|+|+.++++++|....|...+++.+...|+.++.||||+| .|+.++++++|+++|+++
T Consensus 317 ~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 391 (391)
T TIGR01328 317 AGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-LEDADDLIADLKQALDAL 391 (391)
T ss_pred HHHHHHHHhCCcce----EecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHhhC
Confidence 77889999999744 5889999999999999999999988888889999999999999 999999999999999864
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=333.02 Aligned_cols=302 Identities=31% Similarity=0.543 Sum_probs=267.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC-CceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~nptG~~ 79 (324)
|+|+..++.+++++||+|+++.+.|.++...++.+ .. .|+++.+++. |++++++++ ++ ++++|++++|+||||.+
T Consensus 78 ~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~-~g~~v~~~~~-d~~~l~~~i-~~~~tklV~ie~p~NPtG~v 153 (385)
T PRK08574 78 MAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EK-FGVKVVLAYP-STEDIIEAI-KEGRTKLVFIETMTNPTLKV 153 (385)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hc-cCcEEEEECC-CHHHHHHhc-CccCceEEEEECCCCCCCEe
Confidence 46888888888999999999999999998887654 34 7888888754 689999999 66 89999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEE-EEcChhHHHHHHHhhhhhhhcc
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~-i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
.|+++|+++|+++|+++|+|++| .++...+...|+|++++|++|++++++..+||+ ++.++++.+.++.... ..
T Consensus 154 ~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~----~~ 229 (385)
T PRK08574 154 IDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR----RL 229 (385)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH----hc
Confidence 99999999999999999999999 566667778899999999999999988877784 4567888888876665 46
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
|..+++..++.++.+++.+..+++++.+++.++.++|++++. ++.+|.++++|+|.++.+++++ .|.|++++|+++
T Consensus 230 g~~~~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~-~g~g~~~s~~l~~ 308 (385)
T PRK08574 230 GTIMQPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGK-DLYGGVVSFRVKG 308 (385)
T ss_pred CCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCC-CCcceEEEEEeCC
Confidence 777888888999999999999999999999999999999986 7999999999999999998742 257999999996
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+.+|+++++.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|+++|+
T Consensus 309 ~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~al~ 383 (385)
T PRK08574 309 GRDAVLKFLRSLKLIK----PSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG-LEDVEDLIEDLDQALG 383 (385)
T ss_pred CHHHHHHHHHcCCcce----EccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHh
Confidence 6678899999999744 6899999999999999999999999999999999999999999 9999999999999997
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
++
T Consensus 384 ~~ 385 (385)
T PRK08574 384 SI 385 (385)
T ss_pred cC
Confidence 64
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=333.01 Aligned_cols=307 Identities=29% Similarity=0.467 Sum_probs=268.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+||.+++.+++++||+||++.+.|.++...+.....+ +|+++.+++.. |++++++++ +++||+|++++|+||++.+
T Consensus 86 ~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~-~Gi~v~~vd~~~d~~~l~~~I-~~~Tk~I~~e~pgnP~~~v 163 (432)
T PRK06702 86 QAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRK-LGIDVTFFNPNLTADEIVALA-NDKTKLVYAESLGNPAMNV 163 (432)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHhC-CcCCeEEEEEcCCCccccc
Confidence 57899999999999999999999999988886555555 89999999984 899999999 8899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh----------HHH----
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------LVN---- 144 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~----------~~~---- 144 (324)
.|+++|+++|+++|+++|+|+++ .++...|.++|+|+++.|+||+++|++.-++|.++...+ +.+
T Consensus 164 ~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~ 243 (432)
T PRK06702 164 LNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPS 243 (432)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccc
Confidence 99999999999999999999999 667788999999999999999999999999888863221 110
Q ss_pred -------------H-HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 145 -------------S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 145 -------------~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
. +...........|..+++..++++++++++++.+++++.+|+..+.++|++++. ++.+|.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~ 323 (432)
T PRK06702 244 YHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDS 323 (432)
T ss_pred ccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCC
Confidence 0 100110012255778999999999999999999999999999999999999986 789999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+++|.+++++.+. |.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++.+|....|..++++.+...|+
T Consensus 324 ~p~~~l~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi 397 (432)
T PRK06702 324 NENYSLAQKYLKK--GASGVLTFGIKGGLEAAKEFIANVKLAT----LVTHVADARTCVIHPASTTHRQLSAEDQRLAGV 397 (432)
T ss_pred CccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCccce----eccccCCCCcceECCCCCCcccCCHHHHHhcCC
Confidence 9999999999742 57999999997 5677889999999744 699999999999999999999999999989999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+++.||||+| .|+.++++++|+++|+.=
T Consensus 398 ~~~liRlSvG-lEd~eDLi~Dl~~Al~~~ 425 (432)
T PRK06702 398 TSDLIRLSVG-IEDVSDIIADLEAALVGG 425 (432)
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=332.78 Aligned_cols=304 Identities=40% Similarity=0.598 Sum_probs=269.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|+.+...+...+.. .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 89 ~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~~i-~~~tklI~iesP~NPtG~v~ 166 (400)
T PRK06234 89 MGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR-YGVEVTFVDTSNLEEVRNAL-KANTKVVYLETPANPTLKVT 166 (400)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh-CCeEEEEECCCCHHHHHHHh-ccCCeEEEEECCCCCCCCcC
Confidence 46788888888999999999999999888776555555 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhc--CCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDK--GVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~--~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|.++|+++ |+++|+|++|+ +....+...++|++++|++|+++++|++++||+++++++++.++.... ....
T Consensus 167 dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~--~~~~ 244 (400)
T PRK06234 167 DIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI--KDMT 244 (400)
T ss_pred CHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH--HHhc
Confidence 999999999997 99999999994 444566777899999999999999998877999999988888764321 1145
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
+..+++..++..+++++.++.+++++.+++.++.++|++++. ++.+|.++++|.|.++.++.+ +.|++++|+++
T Consensus 245 g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~---~~g~l~s~~l~~ 321 (400)
T PRK06234 245 GSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMS---LPGAMISFELKG 321 (400)
T ss_pred CCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCC---CCCceEEEEecC
Confidence 678888999999999999999999999999999999999986 899999999999999998875 67899999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+.+|+++|+.++ +++|+|+.++++++|....|...++..+...|++++.||+|+| .|+.++++++|++||+
T Consensus 322 ~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl~~dl~~al~ 396 (400)
T PRK06234 322 GVEEGKVVMNNVKLAT----LAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG-LEDVDDIIADLKQALD 396 (400)
T ss_pred cHHHHHHHHHhCCcce----EeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHHH
Confidence 5567889999999743 5899999999999999999999999999899999999999999 9999999999999998
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
++
T Consensus 397 ~~ 398 (400)
T PRK06234 397 LI 398 (400)
T ss_pred HH
Confidence 75
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=331.82 Aligned_cols=304 Identities=30% Similarity=0.531 Sum_probs=263.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++++.|+++...+.. ..+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 72 ~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~-l~~-~G~~v~~v~~~d~e~l~~~l-~~~tklV~vesp~NptG~v~ 148 (397)
T PRK05939 72 MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRG-LGVEVTMVDATDVQNVAAAI-RPNTRMVFVETIANPGTQVA 148 (397)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHH-HHh-cCCEEEEECCCCHHHHHHhC-CCCCeEEEEECCCCCCCCHH
Confidence 5788999988999999999999999988776643 334 79999999998999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh--------HHHH------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--------LVNS------ 145 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~--------~~~~------ 145 (324)
|+++|+++|+++|+++|+|++| .+..+++...|+|+++.|+||+++++|.+++|+++.+.. +...
T Consensus 149 dl~~I~~la~~~gi~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~ 228 (397)
T PRK05939 149 DLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDP 228 (397)
T ss_pred hHHHHHHHHHHcCCEEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccch
Confidence 9999999999999999999999 566677888899999999999999999998565553321 1111
Q ss_pred ----HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHh
Q 020548 146 ----MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 146 ----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~ 219 (324)
+...........|..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|.++++|+|.+++++.
T Consensus 229 ~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~ 308 (397)
T PRK05939 229 QQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELF 308 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhc
Confidence 111111111256888999999999999999999999999999999999999986 89999999999999999987
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
. |.|++++|++++.....+|++.++.+. .++|+|+.++++++|....|...+++.+...|++++.||+|+| .
T Consensus 309 ~---g~g~l~sf~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svG-l 380 (397)
T PRK05939 309 R---HYGGLLSFELADGIDCFDFLNRLKLVI----KATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVG-I 380 (397)
T ss_pred c---CCceEEEEEeCCHHHHHHHHHhCCcce----EccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeC-C
Confidence 4 689999999986667889999999633 5899999999999999999999888888889999999999999 9
Q ss_pred CCHHHHHHHHHHHHHh
Q 020548 300 GTLDQRWSQFEKALSR 315 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~ 315 (324)
||.++++++|+++|++
T Consensus 381 Ed~~dLi~dl~~Al~~ 396 (397)
T PRK05939 381 EDEADLIADFEQALDA 396 (397)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999964
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=329.20 Aligned_cols=301 Identities=34% Similarity=0.591 Sum_probs=267.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+.+++ ++++|||+|++++|.|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 75 ~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~-~gi~v~~vd~~d~e~l~~ai-~~~t~lV~lesP~Nptg~~~ 151 (380)
T PRK06176 75 LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVK-NGLSCTIIDTSDLSQIKKAI-KPNTKALYLETPSNPLLKIT 151 (380)
T ss_pred HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHh-cCeEEEEcCCCCHHHHHHhc-CcCceEEEEECCCCCCceec
Confidence 45777655 56899999999999999888777666655 89999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .++...|...++|++++|++|++++++..++|+++. ++++.+.++..+. ..|
T Consensus 152 di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~----~~G 227 (380)
T PRK06176 152 DLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN----AIG 227 (380)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH----Hhc
Confidence 9999999999999999999999 445556778899999999999999988777798876 4567777776665 556
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..++...+++..+..|++++.+++.++.++|++++. ++.+|.++++++|++++++.+ |.|++++|++++.
T Consensus 228 ~~~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 304 (380)
T PRK06176 228 GVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMR---GFSGMLSFTLKND 304 (380)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEECCH
Confidence 77778888888889999999999999999999999999986 789999999999999999874 6899999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|+++++.++ +++|+|+.++++++|....|...+++.+...|++++.||+|+| .|+.++++++|++||+++
T Consensus 305 ~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~Al~~~ 379 (380)
T PRK06176 305 SEAVAFVESLKLFI----LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG-IEHEQDLLEDLEQAFAKI 379 (380)
T ss_pred HHHHHHHHcCCcce----EccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHhhc
Confidence 88899999999744 6899999999999999999999999999999999999999999 999999999999999864
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=332.07 Aligned_cols=308 Identities=32% Similarity=0.520 Sum_probs=266.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++.+.|++....+....+. .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 83 ~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~-~gi~v~~~d~~d~e~le~ai-~~~tklV~lesp~NPtG~v~ 160 (425)
T PRK06084 83 MAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPR-IGIETRFAAHDDIAALEALI-DERTKAVFCESIGNPAGNII 160 (425)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccc-ceeEEEEECCCCHHHHHHHh-ccCCcEEEEeCCCCCCCeec
Confidence 46888999999999999999999999888777665555 78999999888999999999 77899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH--HH-------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VN------------- 144 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~--~~------------- 144 (324)
|+++|.++|+++|+++|+|++| .+....+.+.++|+++.|++|+++++|.++||+++.++.+ .+
T Consensus 161 dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~ 240 (425)
T PRK06084 161 DIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDP 240 (425)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCc
Confidence 9999999999999999999999 5556677888999999999999999999998877754321 10
Q ss_pred ---------------HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCC
Q 020548 145 ---------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLE 207 (324)
Q Consensus 145 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~ 207 (324)
.............|..+++..+++++++++.+..|++++.+++.++.++|++++. ++.+|.++
T Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~ 320 (425)
T PRK06084 241 SYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLP 320 (425)
T ss_pred ccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence 0000000011256788999999999999999999999999999999999999986 79999999
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
++|.|.++.++.+. +.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++++|....|...+++.+...|
T Consensus 321 ~~p~~~~~~~~~~g--~~gg~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~slv~~p~~~~h~~~~~~~~~~~g 394 (425)
T PRK06084 321 DHPEHELARRYMGG--KPASILSFGIKGGQAAGARFIDALKLVV----RLVNIGDAKSLACHPASTTHRQLNDEELEKAG 394 (425)
T ss_pred CcccHHHHHHhCCC--CcceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCceeeeCCCcCCcccCCHHHHHhcC
Confidence 99999999998751 26999999997 5566889999999744 58999999999999999999999999998999
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++++.||+|+| .||.++++++|+++|++..
T Consensus 395 i~~~liR~svG-lEd~~dLi~dl~~Al~~~~ 424 (425)
T PRK06084 395 VSRDMVRLSIG-IEHIDDIIADLAQALDASK 424 (425)
T ss_pred CCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 99999999999 9999999999999998653
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=328.19 Aligned_cols=302 Identities=31% Similarity=0.540 Sum_probs=258.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.+.|++....+...... .|+++..++.++.+.+++.+ ++++++|++++|+||||.+.
T Consensus 70 ~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~-~G~~v~~~~~~~~~~l~~~~-~~~tklV~l~sp~NPtG~v~ 147 (376)
T PRK06460 70 MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKN-WGVNVDASNPGSDNIIEKAK-SKRYDVVFVENITNPLLRVV 147 (376)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHh-hCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCccc
Confidence 45788888889999999999998876555444444444 78999888877666666655 67899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++|+. +...+...++|+++.|+||++++++..++||+++++++++.++.... ..+.
T Consensus 148 d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~----~~g~ 223 (376)
T PRK06460 148 DITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRR----TLGT 223 (376)
T ss_pred CHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHH----hcCC
Confidence 999999999999999999999943 33445556899999999999987654335999999999999887665 4455
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+.+..++.++++.++++.+++++.++++++.++|++++. ++.+|.++++|.|.++.++.+ |.|++++|+++ +.
T Consensus 224 ~~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~s~~~~~~~ 300 (376)
T PRK06460 224 SLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLK---GFGGVLSFEVNGGQ 300 (376)
T ss_pred CCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEEcCcH
Confidence 5777777877888889999999999999999999999976 799999999999999999875 68999999997 55
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|++.++.+. +++|+|+.++++.+|....|...+++.+...|++++.||+|+| .|+.++++++|++||+.+
T Consensus 301 ~~~~~~~~~l~~~~----~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 301 ESALKVMKSLKLII----PAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG-IEDVNDLIEDLDRALSTL 375 (376)
T ss_pred HHHHHHHHhCCcce----eccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhh
Confidence 77889999998644 6889999999999999999999999999999999999999999 999999999999999864
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=331.81 Aligned_cols=301 Identities=28% Similarity=0.454 Sum_probs=263.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeE-EEecCCCHHHHHHhhh----cCCceEEEEecCCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT-TFVDISDHEMVNSAIV----QGRTKVLYFESISNP 75 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~l~~~l~----~~~~~~v~~~~~~np 75 (324)
|+||..++.+++++||+|+++.|.|+.+...+...+.. +|+++ .+.+..|++++++++. ++++++|++++|+||
T Consensus 108 ~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~-~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NP 186 (427)
T PRK07049 108 MSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN-FGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANP 186 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh-cCcEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCC
Confidence 46888899999999999999999999998876554444 78874 4444457888877663 257999999999999
Q ss_pred cccccChHHHHHHHHh------cCCEEEEcCCC-CcCCCCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVANIPELSRLAHD------KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~------~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~ 147 (324)
||.+.|++++.++++. +++++|+|++| ..+...|...++|+++.|+||++++ +|.|+ ||+++++++++.+.
T Consensus 187 tg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~-G~vv~~~~l~~~l~ 265 (427)
T PRK07049 187 TNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVA-GAVLGRKALIRQVR 265 (427)
T ss_pred CCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEE-EEEECCHHHHHHHH
Confidence 9999999999999987 79999999998 5555677778899999999999995 78885 99999999999998
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCC--CCCchhHHHHHHhccCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL--EDHPHHELLKSMANKEY 223 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~--~~~~~~~~~~~~~~~~~ 223 (324)
.... ..+..+++..++++++.++.+..+++++.++++.+.++|++++. ++.+|++ +++|+|.+++++.+
T Consensus 266 ~~~~----~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~--- 338 (427)
T PRK07049 266 ALRS----AIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCT--- 338 (427)
T ss_pred HHHH----hcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCC---
Confidence 7766 56788889999999999999999999999999999999999975 8899975 99999999999874
Q ss_pred CcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 224 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 224 ~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
|.|++++|+++ +.+.+.+|+++++.++ +++|+|+.++++++|....|...+++.+...|+.++.||||+| .|+.
T Consensus 339 g~g~~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~ 413 (427)
T PRK07049 339 GAGSTFSFDIKGGQAAAFRFLNALQIFK----LAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG-IEHP 413 (427)
T ss_pred CCccEEEEEEcCCHHHHHHHHHcCcccE----EcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeC-cCCH
Confidence 68999999997 5567889999999744 5899999999999999999999999999899999999999999 9999
Q ss_pred HHHHHHHHHHHHh
Q 020548 303 DQRWSQFEKALSR 315 (324)
Q Consensus 303 ~~~~~~l~~~l~~ 315 (324)
++++++|+++|++
T Consensus 414 ~dl~~dl~~al~~ 426 (427)
T PRK07049 414 DDLIADLAQALDA 426 (427)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=329.38 Aligned_cols=299 Identities=31% Similarity=0.505 Sum_probs=265.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++...|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 95 ~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~~esp~Nptg~v~ 172 (403)
T PRK07810 95 MSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEAL-SVPTQAVFFETPSNPMQSLV 172 (403)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCCCeec
Confidence 46788888888999999999998887776666555555 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....+.+.|+|+++.|++|+++++|.++||+++++++.+. .++.... ..|
T Consensus 173 dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~----~~g 248 (403)
T PRK07810 173 DIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR----HTG 248 (403)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH----HhC
Confidence 9999999999999999999999 455667778899999999999999999998899998877554 4554444 556
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
..+++..+++++++++.+..+++++.+++.++.++|++++. ++.+|+++++|+|.+++++.+ |.|++++|++++
T Consensus 249 ~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~g~~~s~~l~~~ 325 (403)
T PRK07810 249 PALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMS---GGGTVVTFELDAP 325 (403)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEEcCC
Confidence 77899999999999999999999999999999999999986 799999999999999999875 689999999974
Q ss_pred ----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHH
Q 020548 236 ----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 311 (324)
Q Consensus 236 ----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~ 311 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....|...+.+.+...|+.++.+|||+| .|+.++++++|++
T Consensus 326 ~~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svG-lE~~~dli~dl~~ 400 (403)
T PRK07810 326 EDAAKKRAFEVLDKLRVID----ISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVG-LEDTDDLIADLDR 400 (403)
T ss_pred CCcCHHHHHHHHHhCCceE----EeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence 466789999999744 6889999999999999999999999888899999999999999 9999999999999
Q ss_pred HH
Q 020548 312 AL 313 (324)
Q Consensus 312 ~l 313 (324)
||
T Consensus 401 Al 402 (403)
T PRK07810 401 AL 402 (403)
T ss_pred hh
Confidence 87
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=326.32 Aligned_cols=299 Identities=38% Similarity=0.643 Sum_probs=264.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++ .+++|||+|++++|.|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 75 ~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tklV~le~P~NPtg~~~ 151 (377)
T PRK07671 75 MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNR-FGIEHTFVDTSNLEEVEEAI-RPNTKAIYVETPTNPLLKIT 151 (377)
T ss_pred HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCCccc
Confidence 34565544 56899999999999999777666555555 79999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++| .+....+...++|++++|++|++++++..++|+++. ++++.+.+...+. ..|
T Consensus 152 dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~----~~g 227 (377)
T PRK07671 152 DIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN----STG 227 (377)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH----hhc
Confidence 9999999999999999999999 445566777899999999999999887655687755 6678888887776 568
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..++++++++..+..+++++.+++..+.++|++++. ++.+|.++++|.|.++.++.+ |.|++++|++.+.
T Consensus 228 ~~~~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 304 (377)
T PRK07671 228 GILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQAN---GFGGMISFDVGSE 304 (377)
T ss_pred CCCCHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEEeCCH
Confidence 88899999999999999999999999999999999999976 789999999999999999875 6789999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+|+++++.++ +++|+|+.++++++|....|...+++.+...|+.++.||+|+| .|+.++++++|+++|+
T Consensus 305 ~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~ 377 (377)
T PRK07671 305 ETANKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVG-IEDGEDLIEDLAQALA 377 (377)
T ss_pred HHHHHHHHhCCcce----EccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHhC
Confidence 78999999999744 6999999999999999999999999889899999999999999 9999999999999984
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=332.31 Aligned_cols=300 Identities=30% Similarity=0.503 Sum_probs=264.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++ .++++||+|+++.+.|+++...+....++ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 158 ~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~-~G~~v~~vd~~d~e~l~~ai-~~~TklV~lesPsNPtG~i~ 234 (464)
T PLN02509 158 MAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTNLDEVAAAI-GPQTKLVWLESPTNPRQQIS 234 (464)
T ss_pred HHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHH-CCeEEEEeCCCCHHHHHHhC-CcCCeEEEEECCCCCCCCHH
Confidence 35665544 56899999999999999988777555555 79999999888999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .++...+...++|++++|++|++++++..++|+++. ++.+.+.++.... ..+
T Consensus 235 Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~----~~g 310 (464)
T PLN02509 235 DIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN----SEG 310 (464)
T ss_pred HHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 555567777899999999999999988766788875 4555666655544 446
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..+++.+.+++.+..+++++.++++++.++|++++. ++.+|+++++|+|.++.++.+ |.|++++|.+.+.
T Consensus 311 ~~l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~---g~gg~~sf~~~~~ 387 (464)
T PLN02509 311 SGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSV 387 (464)
T ss_pred CCcCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCC---CCceEEEEEeCCH
Confidence 66788899999999999999999999999999999999986 899999999999999999885 6899999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.+.+|++.++.+. +++|+|+.++++++|....|..++++++...|++++.||+|+| .|+.++++++|++||+.
T Consensus 388 ~~~~~f~~~l~l~~----~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvG-lE~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 388 ALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFRT 461 (464)
T ss_pred HHHHHHHHcCCcce----EcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHcc
Confidence 77889999999633 6999999999999999999999999999999999999999999 99999999999999964
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=326.01 Aligned_cols=301 Identities=32% Similarity=0.504 Sum_probs=265.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++. ++++||+|+++++.|+++...++....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 72 ~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~~~le~~i-~~~tklv~le~psnptg~v~ 148 (378)
T TIGR01329 72 MAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPR-SGVVVVHVDTTDLDKVKAAL-GPKTKLVLLESPTNPLQKIV 148 (378)
T ss_pred HHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CcCceEEEEECCCCCCCeee
Confidence 356776665 7899999999999999988877655555 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .+....+.+.++|++++|++|++++++..++|+++. ++.+.+.++.... ..|
T Consensus 149 dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~----~~G 224 (378)
T TIGR01329 149 DIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN----STG 224 (378)
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH----hcC
Confidence 9999999999999999999998 555667778899999999999998876544699876 5566677776655 457
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..++++..+++.+..++++..+++..+.++|++++. ++.+|.++++|.+.++.+..+ +.|++++|++.+.
T Consensus 225 ~~~~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~---g~~~~~sf~~~~~ 301 (378)
T TIGR01329 225 SGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAK---GAGSVLSFETGSV 301 (378)
T ss_pred CcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CcceEEEEEECCH
Confidence 77888888888889999999999999999999999999986 889999999999999998764 6899999999766
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
....+|++.|+. ++ +++++|+.++++++|....|..++++.+...|++++.||||+| .|+.++++++|+++|+++
T Consensus 302 ~~~~~~~~~L~~---~~-i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 302 ALSKRLVEATKL---FS-ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG-IEDVDDLISDLDIAFVTA 376 (378)
T ss_pred HHHHHHHHhCcC---cc-cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence 668899999986 43 5999999999999999999999999989899999999999999 999999999999999865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=328.42 Aligned_cols=310 Identities=30% Similarity=0.517 Sum_probs=268.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||.+++.+++++||+|+++..+|+++...+...+++ .|+++.++|.+|++++++++ +++|++|++++++||+|.+.
T Consensus 89 t~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~d~~~l~~~i-~~~TklV~~e~~~np~g~v~ 166 (433)
T PRK08134 89 QAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRR-FGIETTFVKPGDIDGWRAAI-RPNTRLLFGETLGNPGLEVL 166 (433)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhh-CCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCcccCccc
Confidence 57899999888999999999999999887777555555 89999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH----------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------------- 143 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~---------------- 143 (324)
|+++|.++|+++|+++|+|++| .+....|.++|+|+++.|.||+++++|..+||+++....+.
T Consensus 167 Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~ 246 (433)
T PRK08134 167 DIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAG 246 (433)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCccc
Confidence 9999999999999999999999 56667788889999999999999999988877766321100
Q ss_pred -------------HHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 144 -------------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 144 -------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
..+...........|..+++..++++++++++++.|++++.+++.++.++|++++. ++.+|.+++
T Consensus 247 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~ 326 (433)
T PRK08134 247 FHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELES 326 (433)
T ss_pred ccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence 00000110011255778999999999999999999999999999999999999986 789999999
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
+++|.++.++.+. |.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|+
T Consensus 327 ~p~~~~~~~~~~~--g~gg~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi 400 (433)
T PRK08134 327 HPDHALAKRLLPR--GAGSVFSFDLKGGRAAGRKFIESLKLFS----HLANVGDARSLVIHPASTTHFRMDAAALAAAGI 400 (433)
T ss_pred CccHHHHHHhCCC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCccCcccCCHHHHHhcCC
Confidence 9999999988742 57999999997 5677899999999744 588999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+++.||||+| .|+.++++++|+++|+++.+.
T Consensus 401 ~~~liRlsvG-lE~~~dli~dl~~Al~~~~~~ 431 (433)
T PRK08134 401 GEGTIRLSIG-LEDADDLIDDLKRALKAAEKA 431 (433)
T ss_pred CCCeEEEEec-cCCHHHHHHHHHHHHHhhhhc
Confidence 9999999999 999999999999999987654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=327.07 Aligned_cols=305 Identities=30% Similarity=0.517 Sum_probs=266.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec-CCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+|+..++.+++++||+|+++...|.++...+...+++ .|+++.+++ ..|++++++++ ++++++|++++|+||+|.+
T Consensus 94 ~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~-~Gi~v~~vdd~~d~e~l~~ai-~~~tklV~ie~~sNp~G~v 171 (436)
T PRK07812 94 QAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAV-RPNTKAFFAETISNPQIDV 171 (436)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhc-CeEEEEEECCCCCHHHHHHhC-CCCCeEEEEECCCCCCCee
Confidence 56888899999999999999999999988776655566 799999985 56899999999 7899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH----------------
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL---------------- 142 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~---------------- 142 (324)
.|+++|+++|+++|+++|+|+++ .+....+.++|+|+++.|+||+++++|..++|.++.+..+
T Consensus 172 ~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~ 251 (436)
T PRK07812 172 LDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPS 251 (436)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcc
Confidence 99999999999999999999998 5566788888999999999999999998887777753211
Q ss_pred --------------HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCC
Q 020548 143 --------------VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL 206 (324)
Q Consensus 143 --------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~ 206 (324)
+...+.. .....|..+++..+++++++++++..|++++.+++.++.++|++++. ++.+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl 328 (436)
T PRK07812 252 YHGVVFAELGPPAYALKARVQ---LLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGL 328 (436)
T ss_pred cccchhhhcchhHHHHHHHHH---HHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 1111111 12266889999999999999999999999999999999999999986 7899999
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 285 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (324)
+++|+|.++.++.+. |.|++++|+++ +.+.+.+|+++++.++ .++|+|+.++++++|....|..++++.+...
T Consensus 329 ~s~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~ 402 (436)
T PRK07812 329 PSSPWYERAKRLAPK--GTGAVLSFELAGGVEAGKAFVNALTLHS----HVANIGDVRSLVIHPASTTHSQLTPEEQLAT 402 (436)
T ss_pred CCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----EecccCCCcceeeCCCCCCcccCCHHHHHhc
Confidence 999999999998742 57999999997 5567899999999754 5889999999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|++++.||||+| .|+.++++++|+++|+++.
T Consensus 403 gi~~~liRlSvG-lEd~~dli~dl~~Al~~~~ 433 (436)
T PRK07812 403 GVTPGLVRLAVG-IEGIDDILADLEAGFAAAK 433 (436)
T ss_pred CCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 999999999999 9999999999999998775
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=326.21 Aligned_cols=304 Identities=37% Similarity=0.568 Sum_probs=267.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.|.|......+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 90 ~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~le~p~NPtG~~~ 167 (403)
T PRK07503 90 MGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGE-FGVTVRHVDLTDPAALKAAI-SDKTRMVYFETPANPNMRLV 167 (403)
T ss_pred HHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhh-CCEEEEEeCCCCHHHHHHhc-CccCcEEEEeCCCCCCCeee
Confidence 46788888888999999999999998776666544545 89999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh--hhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--HQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~--~~~~~~~~ 157 (324)
|+++|.++|+++|+++|+|++| .++...+...++|++++|++|+++++|..++|+++.++++++.++.. .. ..
T Consensus 168 di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~----~~ 243 (403)
T PRK07503 168 DIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKD----MT 243 (403)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHh----Cc
Confidence 9999999999999999999999 44455667779999999999999998765579999999888888643 22 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
+..+++..+++.+++++.+..+++++.+++..+.++|++++. ++.+|.+++++.|.++.++.+ +.|++++|.++
T Consensus 244 g~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~---~~g~~~s~~~~~ 320 (403)
T PRK07503 244 GAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMA---LPGGMIAFELKG 320 (403)
T ss_pred CCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEEEEECC
Confidence 677888999999999999999999999999999999999986 788999999999999998764 57999999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.....+|++.++.+. .++|+|+.++++++|....|..++++.+...|++++.||||+| .|+.++++++|+++|+
T Consensus 321 ~~~~~~~~~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~Al~ 395 (403)
T PRK07503 321 GIAAGRRFMNALQLFA----RAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVG-LEDVADILADLAQALD 395 (403)
T ss_pred CHHHHHHHHHhCCcce----eecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEe-cCCHHHHHHHHHHHHH
Confidence 5566789999998743 5889999999999999888999999999999999999999999 9999999999999999
Q ss_pred hhhh
Q 020548 315 RMQD 318 (324)
Q Consensus 315 ~~~~ 318 (324)
.+..
T Consensus 396 ~~~~ 399 (403)
T PRK07503 396 ACAV 399 (403)
T ss_pred HHHH
Confidence 8764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=324.54 Aligned_cols=300 Identities=43% Similarity=0.699 Sum_probs=267.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....++..... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 65 ~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~np~g~~~ 142 (369)
T cd00614 65 MAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPK-LGIEVTFVDPDDPEALEAAI-KPETKLVYVESPTNPTLKVV 142 (369)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCeec
Confidence 46888999999999999999999999988777655555 79999999999999999999 77899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++++|++| .+....+.+.++|+++.|++|++++++..++|++++++ ++++.++.... ..|
T Consensus 143 dl~~i~~la~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~----~~g 218 (369)
T cd00614 143 DIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL----ALG 218 (369)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH----hhC
Confidence 9999999999999999999999 44456777889999999999999988755469999877 88888887665 456
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++++.+++.+..+++++.+++.++.++|++++. ++.+|.++++|.|.++.++.+ +.|++++|.++ +
T Consensus 219 ~~~~p~~a~~~l~~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~---g~g~i~s~~l~~~ 295 (369)
T cd00614 219 TILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYGGVFSFELKGG 295 (369)
T ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcC---CCceEEEEEeCCC
Confidence 77888888888889999999999999999999999999975 788999999999999999875 68999999997 6
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+.+.+|+++++.++ +++|+|+.++++++|....|...++..+...|++++.||+|+| .|+.++++++|+++|+
T Consensus 296 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG-lE~~~dl~~dl~~al~ 369 (369)
T cd00614 296 LEAAKKFLNALKLFS----LAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG-IEDVEDLIADLEQALK 369 (369)
T ss_pred HHHHHHHHHcCCcce----EcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHhhC
Confidence 788999999999743 5899999999999999999988888888888999999999999 9999999999999873
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=324.44 Aligned_cols=297 Identities=35% Similarity=0.553 Sum_probs=259.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++|+|++....+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 86 ~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~gi~~~~~d~~d~e~l~~~i-~~~tklV~ie~p~NPtg~~~ 163 (388)
T PRK07811 86 MAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDLSDLDAVRAAI-TPRTKLIWVETPTNPLLSIT 163 (388)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcC-CCeEEEEeCCCCHHHHHHhc-CcCCeEEEEECCCCCcceec
Confidence 46889999999999999999999999887776655555 79999999988999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .+....+...++|++++|++|++++++..++|+++. ++++.+.+..... ..+
T Consensus 164 dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~----~~g 239 (388)
T PRK07811 164 DIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN----GAG 239 (388)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 444456777799999999999999987755698876 5667777765554 456
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+++..+++.+.+++.+..++++..+++..+.++|++++. ++.+|.++++|+|.++.++.+ |.|++++|+++ +
T Consensus 240 ~~~s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~~~~~ 316 (388)
T PRK07811 240 AVPGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR---GFGGMVSVRLAGG 316 (388)
T ss_pred CCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcC---CCCceEEEEeCCC
Confidence 66777788888888999999999999999999999999986 789999999999999999874 68999999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+.+.+|+++++.++ +++|+|+.++++++|....|..++.. ..|+.++.||||+| .|+.++++++|++||+
T Consensus 317 ~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svG-lE~~~dl~~dl~~al~ 387 (388)
T PRK07811 317 EEAARDFCARTKVFT----LAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLADLEQALG 387 (388)
T ss_pred HHHHHHHHHhCCcce----eeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeC-CCCHHHHHHHHHHHhh
Confidence 677899999999744 68999999999999998888777644 35889999999999 9999999999999986
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=322.53 Aligned_cols=303 Identities=33% Similarity=0.540 Sum_probs=266.0
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++. ++++||+|+++++.|+++...+.....+ .|+++.+++..|++++++++ ++++++|++++|+||||.+.
T Consensus 79 ~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~tklV~l~~p~NptG~~~ 155 (390)
T PRK08064 79 MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR-FGIEHTFVDMTNLEEVAQNI-KPNTKLFYVETPSNPLLKVT 155 (390)
T ss_pred HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCcEec
Confidence 456766665 6889999999999999877776655555 79999999988999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++|+|++|.. ....+.+.++|+++.|+||++++++..++|+++. ++++.+.++.... .++
T Consensus 156 dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~----~~g 231 (390)
T PRK08064 156 DIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN----SFG 231 (390)
T ss_pred cHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHH----hcC
Confidence 999999999999999999999943 3456677899999999999999877655687765 5688888888776 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
....+..++..+.++..+..|+++..+++..+.++|++++. ++.+|.++++|.++++.++.+ +.|++++|++++.
T Consensus 232 ~~~~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~sf~~~~~ 308 (390)
T PRK08064 232 AVLGVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT---SAGAVLSFTLQSE 308 (390)
T ss_pred CCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCC---CcceEEEEEECCH
Confidence 77888888888889999999999999999999999999986 899999999999999998764 6899999999987
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++..+ +++|+|+.++++++|....|...+.+.+...|++++.||+|+| .||.++++++|+++|+++
T Consensus 309 ~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvG-le~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 309 EAVRQFVSHVKLPV----FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVG-LENVDDLIADFEQALSYV 383 (390)
T ss_pred HHHHHHHHhCCcce----EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence 78899999999633 5899999999999999888888888888888998999999999 999999999999999987
Q ss_pred hh
Q 020548 317 QD 318 (324)
Q Consensus 317 ~~ 318 (324)
.+
T Consensus 384 ~~ 385 (390)
T PRK08064 384 EE 385 (390)
T ss_pred cc
Confidence 54
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=324.66 Aligned_cols=305 Identities=32% Similarity=0.509 Sum_probs=264.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.+.|++....+...... .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 88 ~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~vesp~NptG~v~ 165 (427)
T PRK05994 88 HAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS-FGWQVRWADADDPASFERAI-TPRTKAIFIESIANPGGTVT 165 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCeec
Confidence 46888899999999999999999999887766544445 79999999998999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh------------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN------------------ 141 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~------------------ 141 (324)
|+++|.++|+++|+++|+|+++ .++...+.++++|+++.|++|+++++++.+||+++....
T Consensus 166 dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~ 245 (427)
T PRK05994 166 DIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245 (427)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcch
Confidence 9999999999999999999999 566677888899999999999999999888777763221
Q ss_pred -----HHHHHH-------HhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCC
Q 020548 142 -----LVNSMM-------DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLE 207 (324)
Q Consensus 142 -----~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~ 207 (324)
+.+.+. .... .....|..+++..+++.+++++.+..|++++.+++..+.++|++++. ++.+|.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~ 324 (427)
T PRK05994 246 YHGLVLHETFGNFAFAIAARVL-GLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLP 324 (427)
T ss_pred hhhhhHHHHhhhhhhHHHHHHH-HHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence 111111 0000 11256778999999999999999999999999999999999999986 78999999
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
++++|.++.++... |.|++++|+++ +.+.+.+|++.++.++ +++|+|+.++++++|....|...+++.+...|
T Consensus 325 ~~~~~~~~~~~~~~--g~g~~~sf~l~~~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g 398 (427)
T PRK05994 325 DDPYHALAQKYSPK--GAGAVFTFGLKGGYEAGVKLVSSLKLFS----HLANIGDTRSLVIHPASTTHRQLTDEQKVAAG 398 (427)
T ss_pred CCccHHHHHHhcCC--CceEEEEEEecCCHHHHHHHHHhCCcce----eccccCCCcceeeCCCCCCcccCCHHHHHhcC
Confidence 99999999998642 57999999997 5677889999999744 68899999999999999999999999898899
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
++++.||+|+| .|+.++++++|+++|++
T Consensus 399 i~~~liRlsvG-lE~~~dli~dl~~Al~~ 426 (427)
T PRK05994 399 AGPDVVRLSIG-IEDVDDIIADLEQALAK 426 (427)
T ss_pred CCCCcEEEEec-cCCHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999975
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=318.58 Aligned_cols=297 Identities=25% Similarity=0.467 Sum_probs=256.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++++.|++....+....+. +|+++.+++..+.+++++++ ++++|+|++++|+||+|...
T Consensus 75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~-~gi~v~~~d~~~~e~l~~~i-~~~tklV~lesp~Np~g~~~ 152 (377)
T TIGR01324 75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR-MGVDITYYDPLIGEDIATLI-QPNTKVLFLEAPSSITFEIQ 152 (377)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCcHH
Confidence 56889999999999999999999999887665444444 78999888776668899998 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++|+|++| .+..+.|.++|+|++++|++|++++++..++|+++.+++.++.+..... ..|.
T Consensus 153 dl~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~----~~G~ 228 (377)
T TIGR01324 153 DIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSY----LMGQ 228 (377)
T ss_pred HHHHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHH----HhCC
Confidence 9999999999999999999999 6666788899999999999999999887768999998888777765444 6688
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--C
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--T 235 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~ 235 (324)
.+.+..++..+++++.+..|++++.+++.++.++|++++. ++.+|.++++|.|.++.++.+ +.|++++|+++ +
T Consensus 229 ~l~p~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~g~~~s~~l~~~~ 305 (377)
T TIGR01324 229 MVDADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFS---GSSGLFSFVLQRLT 305 (377)
T ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhcc---CCCceEEEEECCCC
Confidence 8899999999999999999999999999999999999986 899999999999999999875 68999999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceecccc-ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG-SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+...+|++.++.+ + +++|+|+.++++++|. ...| ..+...++.++.||||+| .|+.++++++|+++|+
T Consensus 306 ~~~~~~~~~~l~~~---~-~~~slG~~~sl~~~~~~~~~~-----~~~~~~~~~~~liR~svG-lE~~~dl~~dl~~al~ 375 (377)
T TIGR01324 306 QKQVHAFLDHLQLF---G-LGYSWGGYESLALCNQPELGH-----RPNIKRNLEGPLIRVHIG-LENVDDLKADLKAGFE 375 (377)
T ss_pred HHHHHHHHHhCCcc---e-EeccCCCccceeecCCCCCCH-----HHHHhccCCCCEEEEEeC-CCCHHHHHHHHHHHHh
Confidence 56788999999973 3 5999999999987433 2222 223345677789999999 9999999999999998
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
.+
T Consensus 376 ~~ 377 (377)
T TIGR01324 376 AI 377 (377)
T ss_pred cC
Confidence 64
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=323.49 Aligned_cols=307 Identities=28% Similarity=0.450 Sum_probs=264.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec-CCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+|+.+++.+++++||+|++++..|+++...+...+.+ .|+++.+++ ..|++++++++ ++++++|+++++.||+|.+
T Consensus 94 ~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~~d~e~l~~~l-~~~tk~V~~e~~~Np~~~v 171 (437)
T PRK05613 94 QAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR-LGIEVTFVENPDDPESWQAAV-QPNTKAFFGETFANPQADV 171 (437)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHh-cCeEEEEECCCCCHHHHHHhC-CccCeEEEEECCCCCCCcc
Confidence 46788888888999999999999999987666555555 899999997 45899999999 8889999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH---------------
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV--------------- 143 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~--------------- 143 (324)
.|+++|+++|+++|+++|+|+++ .+..+.+.+.|+|++++|+||+++++|..+||+++.+.++.
T Consensus 172 ~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~ 251 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFV 251 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCC
Confidence 99999999999999999999998 55567888889999999999999999887778887542210
Q ss_pred ---------------HH--HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCC
Q 020548 144 ---------------NS--MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYP 204 (324)
Q Consensus 144 ---------------~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p 204 (324)
+. +.+.........|..+++..+++++++++++..|++++.+++.++.++|++++. ++.+|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yP 331 (437)
T PRK05613 252 TPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFA 331 (437)
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECC
Confidence 00 000110122266899999999999999999999999999999999999999986 89999
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHH
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (324)
+++++|+|.++.++.. .+.|++++|+++ +.+.+.+|++.++.++ .++|+|+.++++++|....|...+++.+.
T Consensus 332 gl~~~p~~~~~~~~~~--~g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~h~~~~~~~~~ 405 (437)
T PRK05613 332 GLKDSPWYATKEKLGL--KYTGSVLSFDIKGGKDEAWAFIDALKLHS----NLANIGDVRSLVVHPATTTHSQSDEAGLA 405 (437)
T ss_pred CCCCCccHHHHHHhcC--CCCceEEEEEecCCHHHHHHHHHhCCcce----EccCCCCCchhhcCCCccCCccCCHHHHH
Confidence 9999999999998753 257899999997 5677899999999744 68899999999999999999999999999
Q ss_pred hcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 284 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 284 ~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..|++++.||||+| .|+.++++++|+++|+.+
T Consensus 406 ~~Gi~~~liRlsvG-lE~~~dLi~Dl~~Al~~~ 437 (437)
T PRK05613 406 RAGITQATVRLSVG-IEDIDDIIADLEGGFAAI 437 (437)
T ss_pred hcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhC
Confidence 99999999999999 999999999999999853
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=322.70 Aligned_cols=305 Identities=34% Similarity=0.576 Sum_probs=258.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.+.|++....+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 82 ~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~t~~V~le~p~NPtg~v~ 159 (418)
T TIGR01326 82 QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR-LGIEVRFVDPDDPEEFEKAI-DENTKAVFAETIGNPAINVP 159 (418)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCeec
Confidence 46788888888999999999999998877766555555 79999999988999999999 78899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH--------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-------------- 145 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~-------------- 145 (324)
|+++|+++|+++|+++|+|++| .++...+...++|+++.|+||+++++|+++||.++.++.+...
T Consensus 160 dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q 239 (418)
T TIGR01326 160 DIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSY 239 (418)
T ss_pred CHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCcc
Confidence 9999999999999999999999 4455667777899999999999999999984444433221100
Q ss_pred --------------HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCC
Q 020548 146 --------------MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 209 (324)
Q Consensus 146 --------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~ 209 (324)
+...........|..+.+..++.++.++.++..|++++.+++..+.++|.+++. .+.+|.++++
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~ 319 (418)
T TIGR01326 240 HGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASH 319 (418)
T ss_pred ccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence 000000011244677788999999999999999999999999999999999976 7899999999
Q ss_pred chhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
|.|.++.++.+. |.|++++|+++ +.+.+.+|+++++.++ .++|+|+.++++++|....|..+++..+...|++
T Consensus 320 ~~~~~~~~~~~~--g~g~~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~ 393 (418)
T TIGR01326 320 PHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLAS----HLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVT 393 (418)
T ss_pred ccHHHHHHhccC--CCcceEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCCCCcccCCHHHHHhcCCC
Confidence 999999998742 57999999996 5566889999999754 5889999999999999999999999999899999
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
++.||||+| .|+.++++++|++||+
T Consensus 394 ~~liR~svG-lE~~~dl~~dl~~Al~ 418 (418)
T TIGR01326 394 PGLIRLSVG-IENIDDIIADLEQALE 418 (418)
T ss_pred CCeEEEEec-CCCHHHHHHHHHHhhC
Confidence 999999999 9999999999999984
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=318.64 Aligned_cols=296 Identities=31% Similarity=0.519 Sum_probs=257.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|+++.|.|+.+...+.....+ .|+++.+++..|++++++++ ++++++|++++|+||+|.+.
T Consensus 86 ~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~-~gi~~~~~~~~d~~~l~~~i-~~~tklV~lesp~NptG~v~ 163 (386)
T PRK06767 86 MAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK-FMITHSFCDMETEADIENKI-RPNTKLIFVETPINPTMKLI 163 (386)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhh-CcCceEEEEeCCCCCCceec
Confidence 45788888888999999999999999888877655555 78888888888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH-hhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~-~~~~~~~~~~ 158 (324)
|+++|.++|+++|+++++|++| .+....+...++|+++.|++|+++++|.+++|++++++++++.+.. ... ..|
T Consensus 164 dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~----~~g 239 (386)
T PRK06767 164 DLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK----DIG 239 (386)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH----HhC
Confidence 9999999999999999999999 4445567777999999999999999999877999999887776543 333 446
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
+.+++..+++.+.++..+..+++++.+++.++.++|++++. .+.+| .|.+++++.+ +.|++++|+++ +
T Consensus 240 ~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~---~~gg~vsf~l~~~ 310 (386)
T PRK06767 240 GIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMK---RGGGVISFSIKGG 310 (386)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCC---CCCceEEEEEcCC
Confidence 66778888888889999999999999999999999999975 56666 5678887765 57899999997 5
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+...+|+++++. ++ +++|+|+.++++++|....|...+++.+...|++++.||||+| .|+.++++++|+++|+.
T Consensus 311 ~~~~~~f~~~l~~---~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl~~dl~~al~~ 385 (386)
T PRK06767 311 KEETQAFINDLHF---IT-IAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVG-LESWEDIVSDLEQALKK 385 (386)
T ss_pred HHHHHHHHHhCCc---cE-EecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 5678899999996 33 5899999999999999999999999999899999999999999 99999999999999975
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 386 ~ 386 (386)
T PRK06767 386 I 386 (386)
T ss_pred C
Confidence 4
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=302.13 Aligned_cols=281 Identities=31% Similarity=0.514 Sum_probs=245.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||.+++ .++++||+|+++.+.|+.....+....+. .++++.+. .|++++++++ +++|++|++++|+||+|.+.
T Consensus 79 ~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~-~~~~~~~~--~d~~~l~~~i-~~~TklV~lesP~NPtg~~~ 153 (364)
T PRK07269 79 MSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKE-GRFHFTYA--NTEEELIAAI-EEDTDIVYIETPTNPLMVEF 153 (364)
T ss_pred HHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhc-CcEEEEec--CCHHHHHHhc-CcCceEEEEECCCCCCCeee
Confidence 46778777 46799999999999999887766544333 35555553 4899999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|+|++| .++...|...++|++++|++|+++++|..++|+++. ++++.+.++.... ..|
T Consensus 154 di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~----~~G 229 (364)
T PRK07269 154 DIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLN----TTG 229 (364)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHH----HhC
Confidence 9999999999999999999998 666678888899999999999999988876799876 5678888876554 557
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++.+.+++.+..+++++.+++.++.++|++++. ++.+|. .|++++|.+.+.
T Consensus 230 ~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg-------------------~gg~~sf~~~~~ 290 (364)
T PRK07269 230 AVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG-------------------KGGMISFKVADE 290 (364)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC-------------------cCcEEEEEECCH
Confidence 78899999999999999999999999999999999999975 777786 588999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+|++.++... +++|+|+.++++++|+..+|...+++.+...|+.++.||+|+| .|+.++++++|+++|+
T Consensus 291 ~~~~~f~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvG-lE~~~dli~dl~~al~ 363 (364)
T PRK07269 291 TRIPHILNSLKVFT----FAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG-IEDARDLIADLKQALE 363 (364)
T ss_pred HHHHHHHHhCCcce----EccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHhc
Confidence 77889999999643 6899999999999999999999999999999999999999999 9999999999999985
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=301.43 Aligned_cols=292 Identities=32% Similarity=0.561 Sum_probs=254.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||.+++.+++++||+|+++.+.|......+.....+ +|+++.++|.++.+.+. +..+++++|++++|+||++.+.
T Consensus 89 ~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~-~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~ 165 (384)
T PRK06434 89 MGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT-LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVP 165 (384)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHh-cCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceee
Confidence 57899999999999999999999998888777666666 89999999987655554 4234799999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|++++ +++|+++ +++...|...++|++++|.+|++++++.-+||.++. ++++.+.++.... ..|
T Consensus 166 Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~----~~G 239 (384)
T PRK06434 166 DIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK----TLG 239 (384)
T ss_pred cHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH----hcC
Confidence 9999999999998 5679998 566678888999999999999999988766788866 5667777765544 457
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++.+++++.++.+++++.+++..+.++|++++. ++.+|+++ +++++.+ |.|++++|++++.
T Consensus 240 ~~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~---g~g~~~sf~l~~~ 310 (384)
T PRK06434 240 SNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLR---GFGGMLSFELRSM 310 (384)
T ss_pred CCCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcC---CCCceEEEEECCH
Confidence 77889999999999999999999999999999999999986 89999974 6777664 6899999999877
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|++++.||+|+| .|+.++++++|++||++
T Consensus 311 ~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvG-lEd~~dLi~dl~~Al~~ 384 (384)
T PRK06434 311 EDVHKFIRNLEIPM----VAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIG-IEDIDDLIKDIENALSK 384 (384)
T ss_pred HHHHHHHHhCCcce----EccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHHHHHHHhcC
Confidence 78899999999744 5899999999999999999999999999999999999999999 99999999999999963
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=300.78 Aligned_cols=287 Identities=29% Similarity=0.411 Sum_probs=244.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.+++++||+|++++|.|+++...+...+.+ .|+++.+++..+... .+ .+++++|++++|+||+|.+.
T Consensus 75 ~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~~~~~---~~-~~~t~lV~le~p~NPtg~v~ 149 (366)
T PRK07582 75 MAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP-LGVTVREAPTAGMAE---AA-LAGADLVLAETPSNPGLDVC 149 (366)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc-CeEEEEEECCCChHH---Hh-ccCceEEEEECCCCCCCCcc
Confidence 45788888888999999999999999988776544455 799999998765332 33 46899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCC-CeeEEEEEc-ChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGA-DIIAGAVCG-PANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~-~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++|+++|+++++|++| ......|.++++|++++|+||++++++ .+ +||++. ++++.+.+..+.. ..
T Consensus 150 di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~-~G~v~~~~~~l~~~l~~~~~----~~ 224 (366)
T PRK07582 150 DLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLL-LGYVAGRDPELMAAVERWRL----LA 224 (366)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCee-EEEEEcCcHHHHHHHHHHHH----Hh
Confidence 9999999999999999999998 455567777899999999999998755 55 599986 5788888887766 56
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+..+++..++++++++..++.+++++.+++..+.++|++++. ++.+|+++++|.|.++.++.+ |.|++++|++++
T Consensus 225 g~~~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~gg~~s~~~~~ 301 (366)
T PRK07582 225 GAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMR---RFGGLVSFELAD 301 (366)
T ss_pred CCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCC---CCcceEEEEeCC
Confidence 777888999999999999999999999999999999999986 799999999999999999875 689999999998
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|+++++.+. .++|+|+.++++..+... ..+++++.||+|+| .|+.++++++|+++|++
T Consensus 302 ~~~~~~~~~~l~~~~----~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svG-lE~~~dli~dl~~al~~ 365 (366)
T PRK07582 302 AAAAERFVAASRLVV----AATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCG-IEDTDDLVADLERALDA 365 (366)
T ss_pred HHHHHHHHHhCCcce----ecccCCCccchhhhHHHc-----------CCCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 888999999998644 588999999987543221 12366799999999 99999999999999976
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 366 ~ 366 (366)
T PRK07582 366 L 366 (366)
T ss_pred C
Confidence 4
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=301.23 Aligned_cols=296 Identities=25% Similarity=0.359 Sum_probs=252.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|++++|+|..+...+...... .|+++.+++..+.+++++++ ++++++|++++|+||+|...
T Consensus 90 t~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~~~~~l~~~i-~~~tklV~le~p~Np~~~~~ 167 (394)
T PRK07050 90 LAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD-FGITVRFYDPLIGAGIADLI-QPNTRLIWLEAPGSVTMEVP 167 (394)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh-cCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCccHh
Confidence 46888999999999999999999999988766544444 79999999877788899998 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~~~~~~ 158 (324)
++++|+++|+++|+++++|++| .+..+.+.+.|+|+++.|++|++++++..++|+++ .++++.+.++.... ..|
T Consensus 168 di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~----~~G 243 (394)
T PRK07050 168 DVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARM----RLG 243 (394)
T ss_pred hHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 66667888889999999999999886665468665 57788888877766 567
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
....+..++.+++++.++..|++++.+++.++.++|++++. ++.+|.+++++.+.++.++.. +.|++++|++++
T Consensus 244 ~~~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---~~g~~~s~~l~~~ 320 (394)
T PRK07050 244 IGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFT---GAGGLFSVVFDER 320 (394)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCceEEEEEECCC
Confidence 78888888888899999999999999999999999999976 788999999999998888764 578999999973
Q ss_pred --HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 236 --EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 236 --~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
.+...+|++.++. ++ +++|+|+.+++++ |....|.... .....++.||||+| .|+.++++++|+++|
T Consensus 321 ~~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svG-lE~~~dl~~dl~~al 389 (394)
T PRK07050 321 YSPAQVDAFVEALEL---FA-IGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIG-LEDEADLIADLEQAL 389 (394)
T ss_pred CCHHHHHHHHHcCCC---Ce-eccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeC-cCCHHHHHHHHHHHH
Confidence 5778999999997 33 5899999999997 6544433221 23356699999999 999999999999999
Q ss_pred Hhh
Q 020548 314 SRM 316 (324)
Q Consensus 314 ~~~ 316 (324)
+..
T Consensus 390 ~~~ 392 (394)
T PRK07050 390 EAA 392 (394)
T ss_pred HHh
Confidence 864
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=296.54 Aligned_cols=285 Identities=28% Similarity=0.533 Sum_probs=245.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++ +++++||+|++++|.|++....+...... +|+++.+++..|++++++++ ++++++|++++|+||+|...
T Consensus 77 ~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklv~le~P~NP~~~~~ 153 (366)
T PRK08247 77 MAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK-WNVRFVYVNTASLKAIEQAI-TPNTKAIFIETPTNPLMQET 153 (366)
T ss_pred HHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc-cCceEEEECCCCHHHHHHhc-ccCceEEEEECCCCCCCcHH
Confidence 45777655 57889999999999999987777665555 89999999999999999999 77999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
++++|+++|+++|+++|+|++| .++...|...++|++++|+||++++++..++|+++.+ +++.+.+...+. ..+
T Consensus 154 dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~----~~g 229 (366)
T PRK08247 154 DIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN----AAG 229 (366)
T ss_pred HHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 5666677777899999999999998766446999886 678888876665 445
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++++++++.+..+++++.++++.+.++|++++. .+.+|. .|++++|++++.
T Consensus 230 ~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~-------------------~gg~~sf~~~~~ 290 (366)
T PRK08247 230 AVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG-------------------RGGMLSFRLQDE 290 (366)
T ss_pred CCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC-------------------cCcEEEEEECCH
Confidence 55677777888888899999999999999999999999864 455664 577999999876
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+...+|++.++.+. ++.|+|+.++++++|+..+|...+++.+...|+.++.+|||+| .|+.++++++|++||+++
T Consensus 291 ~~~~~~~~~l~~~~----~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svG-lE~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 291 EWVNPFLKSLKLIT----FAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVG-IENVEDLIADLKQAFKQV 365 (366)
T ss_pred HHHHHHHHcCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhc
Confidence 66778999888633 6889999999999999999888888888889999999999999 999999999999999863
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=295.86 Aligned_cols=297 Identities=31% Similarity=0.489 Sum_probs=251.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++.++++|||+|+++.+.|++....+...... .|+++.+++..|++++++++ +++++|++++|+|+++...
T Consensus 88 ~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i--~~tklV~ie~pt~~~~~~~ 164 (389)
T PRK05968 88 MAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKR-MGVEVDYVDGRDEEAVAKAL--PGAKLLYLESPTSWVFELQ 164 (389)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCceEEEeCCCCHHHHHHhc--ccCCEEEEECCCCCCCcHH
Confidence 45788888888999999999999999887666555545 79999999998999999987 4689999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|.++|+++|+++|+|++| .+....+...++|+++.|++|++++++..++|++++++++++.++..... ..+.
T Consensus 165 dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~---~~g~ 241 (389)
T PRK05968 165 DVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYP---YLGA 241 (389)
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHH---hCCC
Confidence 9999999999999999999999 44446677789999999999999998775469999999988888765431 3456
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
.+++..++.++.+++.+..+++++.++++++.++|++++. .+.+|.++++|.. .. .+.|++++|++++..
T Consensus 242 ~~~~~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~-----~~---~g~g~~~sf~~~~~~ 313 (389)
T PRK05968 242 KLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPA-----GL---SGTSGLFSFIFREGI 313 (389)
T ss_pred CCChHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHH-----hC---CCCceEEEEEECCHH
Confidence 6788888889999999999999999999999999999975 6778988877632 22 257889999998666
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCC-CHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL-NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...+|+++|+. ++ +++|+|+.+++++ |..+.|... ++..+...|++++.||+|+| .|+.++++++|+++|++.
T Consensus 314 ~~~~f~~~L~~---~~-~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvG-lE~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 314 DVRAFADALKL---FR-LGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVG-LEGTEALWADLEQALAAA 387 (389)
T ss_pred HHHHHHHhCCc---cE-EecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHHh
Confidence 78999999986 33 5889999999998 877776664 36667788999999999999 999999999999999876
Q ss_pred h
Q 020548 317 Q 317 (324)
Q Consensus 317 ~ 317 (324)
.
T Consensus 388 ~ 388 (389)
T PRK05968 388 S 388 (389)
T ss_pred h
Confidence 4
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=246.51 Aligned_cols=249 Identities=22% Similarity=0.274 Sum_probs=193.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----C---CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----S---DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~---d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..+++++++|||+|++++|.|+.|.... +..|.++..++. . |++++++++ +++||+|++++||
T Consensus 100 ~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~-----~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i-~~ktk~i~ln~P~ 173 (393)
T COG0436 100 EALFLAFLALLNPGDEVLIPDPGYPSYEAAV-----KLAGGKPVPVPLDEEENGFKPDLEDLEAAI-TPKTKAIILNSPN 173 (393)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHH-----HhcCCEEEEEeCCcCccCCcCCHHHHHhhc-CccceEEEEeCCC
Confidence 6899999999999999999999999999988 447888777763 1 799999999 7799999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------CC----CCcEEEeCCccccccCCCeeEEEEEcC-
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------RL----GADVVVHSISKFISGGADIIAGAVCGP- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~- 139 (324)
||||.+.+ +++|+++|++||+++|.||+|.++.++.. +. ...+++.|+||.|+++|+|+ ||++++
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv-G~~v~~~ 252 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI-GWVVGPP 252 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce-eEeecCh
Confidence 99999975 77999999999999999999977765421 11 35799999999999999997 999998
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCC-CceeC-CCCCCCchhHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLG-LKVLY-PGLEDHPHHEL 214 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-p~~~~~~~~~~ 214 (324)
+++.+.+.+... ....+.+.+.|.++..++...+ .++...+.+.++++.+.+.|.+.+ ..+.. |.
T Consensus 253 ~~l~~~~~~~~~-~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~--------- 322 (393)
T COG0436 253 EELIAALRKLKS-YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPE--------- 322 (393)
T ss_pred HHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCC---------
Confidence 888888886665 4446677788888777777653 344455678999999999999886 56555 44
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
++++++..++...+...|+..|-. ..| +.+.|+..++. ....+++|+
T Consensus 323 ----------Ga~Y~~~~i~~~~d~~~f~~~Ll~--~~g-----------V~v~PG~~Fg~----------~~g~~~vRi 369 (393)
T COG0436 323 ----------GAFYLFPKIPELLDSEEFAKKLLE--EAG-----------VAVVPGSGFGE----------PPGEGYVRL 369 (393)
T ss_pred ----------eeEEEEeecCCCCCHHHHHHHHHH--hCC-----------EEEecccccCC----------CCCCCeEEE
Confidence 677788888744556677777664 122 33455554421 123589999
Q ss_pred EeccCCC
Q 020548 295 SVGYLGT 301 (324)
Q Consensus 295 s~g~~~~ 301 (324)
|++ ...
T Consensus 370 s~~-~~~ 375 (393)
T COG0436 370 SLA-TSE 375 (393)
T ss_pred EEe-cCH
Confidence 999 443
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=235.63 Aligned_cols=260 Identities=18% Similarity=0.183 Sum_probs=189.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++ .+++++|++++|||
T Consensus 117 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~nP~N 190 (410)
T PRK06290 117 PALAMLPSCFINPGDVTLMTVPGYPVTGTHTK-----YYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAKLLYLNYPNN 190 (410)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEecCCCcCCcCCHHHHHHhh-cccceEEEEECCCC
Confidence 57888999999999999999999999988774 367777776653 788888888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c-cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++ + .. .+.+++++|+||.+|++|+|+ ||+++++++
T Consensus 191 PTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRi-G~ii~~~~l 269 (410)
T PRK06290 191 PTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRL-AFVVGNELI 269 (410)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhhe-EeEEeCHHH
Confidence 9999987 578888899999999999999665321 1 11 146799999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
++.+...... ...+.+.+.+.++..++....++....+++.++++.+.+.|++.+..+..|.
T Consensus 270 ~~~l~~~~~~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~----------------- 331 (410)
T PRK06290 270 VKAFATVKDN-NDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEVGFKAEMPG----------------- 331 (410)
T ss_pred HHHHHHHHhc-cccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhCCCeecCCC-----------------
Confidence 9988876551 1112223444454445544444556667778999999999999876654443
Q ss_pred CCcceEEEEEeCCH-------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 223 YGFGGLLCLDMETE-------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 223 ~~~g~~~~~~l~~~-------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
+|.++|+.+++. .+..+|.+.|.. .|. ++..|+.. .++++|++
T Consensus 332 --g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~---~~~----------v~~~p~~~---------------~~~~lRi~ 381 (410)
T PRK06290 332 --GTFYLYVKAPKGTKSGIKFENAEEFSQYLIK---EKL----------ISTVPWDD---------------AGHFLRFS 381 (410)
T ss_pred --eeeEEEEECCCccccCCCCCCHHHHHHHHHH---hCC----------EEEECCcc---------------ccCeEEEE
Confidence 566778888732 245667777663 111 11122211 13689999
Q ss_pred ecc----CCCHHHHHHHHHHHHHhh
Q 020548 296 VGY----LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~----~~~~~~~~~~l~~~l~~~ 316 (324)
+++ .++.+..++.|++.|..+
T Consensus 382 ~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 382 VTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred EEcccccccchhHHHHHHHHHHhhc
Confidence 972 355666677777777655
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=234.61 Aligned_cols=219 Identities=15% Similarity=0.155 Sum_probs=168.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++ .+++++|++++|||
T Consensus 104 ~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~P~N 177 (399)
T PRK07681 104 DGLVHLPMVYANPGDIILVPDPGYTAYETGIQ-----MAGATSYYMPLKKENDFLPDLELIPEEI-ADKAKMMILNFPGN 177 (399)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCccchHHHHH-----hcCCEEEEEecCCCCCCcCCHHHHHHhc-cccceEEEEeCCCC
Confidence 57888888999999999999999999998874 368888777653 688998888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. .. .+..++++|+||.|+.+|.|+ ||++++++
T Consensus 178 PTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~~i~~~~ 256 (399)
T PRK07681 178 PVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRI-GYMIGNEE 256 (399)
T ss_pred CcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcccee-EEEecCHH
Confidence 9999987 6788889999999999999997664321 11 135799999999999899997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+..... ....+.+.+.+.++..++... .++....+.+.++++.+.+.|++.+.++..|.
T Consensus 257 l~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~--------------- 320 (399)
T PRK07681 257 IVRALTQFKS-NTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPA--------------- 320 (399)
T ss_pred HHHHHHHHHh-hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC---------------
Confidence 9999887654 111333444555555555442 34555566678899999999999876654454
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|.++|+++++.....++.+.+.
T Consensus 321 ----~g~f~~~~l~~~~~~~~~~~~l~ 343 (399)
T PRK07681 321 ----GSMFVWAEIPKGWTSLSFAYALM 343 (399)
T ss_pred ----eeeEEEEECCCCCCHHHHHHHHH
Confidence 68899999974334455666654
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=231.63 Aligned_cols=219 Identities=19% Similarity=0.212 Sum_probs=165.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----------CCHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----------SDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----------~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++++++++||+|++++|+|+.+...++ ..|.++..++. .|++++++++ ++++++|++++
T Consensus 113 ~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~ 186 (405)
T PRK06207 113 GALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQLDYLSADKRAGLDLDQLEEAF-KAGVRVFLFSN 186 (405)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccCcccCCCcCHHHHHHhh-hhcCeEEEECC
Confidence 57888999999999999999999999988774 25666665543 2789999998 77899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-c----CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-A----RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||||||.+.+ +++|+++|+++|+++|+||+|..+.++ + . ..+..++++|+||.|+.+|+|+ ||+++
T Consensus 187 P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRi-G~ii~ 265 (405)
T PRK06207 187 PNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRL-GVAFG 265 (405)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccce-EEEEc
Confidence 9999999986 678889999999999999999765421 1 1 1245699999999999899997 99999
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHH
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~ 216 (324)
++++++.+...... ...+.+.+.+.++..++... .+++.+++++.++++.+.+.|++. +..+..|.
T Consensus 266 ~~~l~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~----------- 333 (405)
T PRK06207 266 SPAIIDRMEKLQAI-VSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQ----------- 333 (405)
T ss_pred CHHHHHHHHHHHhH-hccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC-----------
Confidence 99999999876651 11222334444444445432 346677777888899999999876 34444343
Q ss_pred HHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 217 SMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
+|.++|++++. ..+...|.+.+.
T Consensus 334 --------gg~fl~~~l~~~~~~~~~~~~~l~ 357 (405)
T PRK06207 334 --------AGSYLFPRLPRLAVSLHDFVKILR 357 (405)
T ss_pred --------eeEEEEEeCcccCCCHHHHHHHHH
Confidence 68899999973 223556777664
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=231.25 Aligned_cols=218 Identities=17% Similarity=0.162 Sum_probs=165.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++.++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|||
T Consensus 102 ~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~G~~v~~v~~~~~~g~~~d~~~l~~~~-~~~~~~v~i~~P~N 175 (383)
T TIGR03540 102 EGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTL-----FAGGEPYEMPLKEENGFLPDFDAIPEDI-AKKAKLMFINYPNN 175 (383)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcchHHHHH-----hcCCEEEEEecCcccCCccCHHHHHhhc-cccceEEEEeCCCC
Confidence 57888999999999999999999999988773 367777766542 688998888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---c---C----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A---R----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~---~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+++ +++|+++|+++|+++|+||+|..+.+.. . . .+.+++++|+||.||.+|+|+ ||++++++
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~i~~~~ 254 (383)
T TIGR03540 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRI-GMAVGNAD 254 (383)
T ss_pred CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcccee-eEEeCCHH
Confidence 9999987 6788999999999999999996553211 1 1 135688999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+....... ..+.+.+.+..+..++... .+++...+++.++++.+.+.|++.+..+..|.
T Consensus 255 l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--------------- 318 (383)
T TIGR03540 255 LIAGLGKVKTNV-DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPK--------------- 318 (383)
T ss_pred HHHHHHHHHHhc-ccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCC---------------
Confidence 999887765411 1122334444444444442 34555666778999999999999876655443
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+.+++..+...|.+.+
T Consensus 319 ----~~~~~~~~l~~~~~~~~~~~~l 340 (383)
T TIGR03540 319 ----ATFYVWVPVPEGYTSAEFAARL 340 (383)
T ss_pred ----cceEEEEECCCCCCHHHHHHHH
Confidence 5677899997444456677665
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=232.78 Aligned_cols=217 Identities=17% Similarity=0.158 Sum_probs=167.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEe-cCCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNP 75 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~-~~~np 75 (324)
++||..+++++++|||.|++++|+|+.+...++ ..|.++..++.+ |++++++++ +.++++++++ +||||
T Consensus 151 ~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~g~~~~~l~~~~-~~~~k~i~~~p~p~NP 224 (431)
T PRK15481 151 IDAIERLLCAHLLPGDSVAVEDPCFLSSINMLR-----YAGFSASPVSVDAEGMQPEKLERAL-AQGARAVILTPRAHNP 224 (431)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCeEEeeccCCCCCCHHHHHHHH-hcCCCEEEECCCCCCC
Confidence 368889999999999999999999999998884 367777777653 789999998 6688998886 89999
Q ss_pred cccccChH---HHHHHHHhc-CCEEEEcCCCCcCCCC----cc--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 76 TLAVANIP---ELSRLAHDK-GVTVVVDNTFSPLVLS----PA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 76 tG~~~~~~---~i~~l~~~~-~~~~ivD~~~~~~~~~----~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||.+.+.+ +|.++|+++ +++||+||+|..+... +. ..+..++++||||.|+ +|+|+ ||+++++++.+.
T Consensus 225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRi-G~~i~~~~~~~~ 302 (431)
T PRK15481 225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRL-AFVASDSATSAR 302 (431)
T ss_pred CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CCcee-EEEeCCHHHHHH
Confidence 99998865 999999999 9999999999665421 12 1246799999999998 89997 999999999988
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+..... ....+.+.+.+.++..++..... +....+.+.++++.+.+.|++.+..+..|.
T Consensus 303 ~~~~~~-~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~----------------- 364 (431)
T PRK15481 303 LRLRLN-SGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQYGIAIPSPG----------------- 364 (431)
T ss_pred HHHHHh-ccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-----------------
Confidence 876544 11123344555555555554322 445667789999999999999876554455
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|.++|+.++. ....+.+.+.
T Consensus 365 --gg~f~~~~l~~--~~~~~~~~l~ 385 (431)
T PRK15481 365 --DGLNLWLPLDT--DSQATALTLA 385 (431)
T ss_pred --CeEEEEEECCC--CHHHHHHHHH
Confidence 68999999973 2345666655
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=229.13 Aligned_cols=219 Identities=15% Similarity=0.190 Sum_probs=165.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++++++.+ |++++++++ ++++++|++++|+|||
T Consensus 100 ~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~klv~~~~p~NPt 173 (389)
T PRK05957 100 MAFMNAILAITDPGDEIILNTPYYFNHEMAIT-----MAGCQPILVPTDDNYQLQPEAIEQAI-TPKTRAIVTISPNNPT 173 (389)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-----hcCCEEEEeecCCCCCcCHHHHHHhc-CcCceEEEEeCCCCCC
Confidence 56777888889999999999999998877663 268888777653 789999999 7789999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A----RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
|.+.+ +++|+++|+++|+++|+||+|..+.+.. . .....+++.|+||.||.+|+|+ ||++.+++++
T Consensus 174 G~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~~ 252 (389)
T PRK05957 174 GVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRI-GYMVIPIHLL 252 (389)
T ss_pred CcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCcccee-EEEecCHHHH
Confidence 99987 8889999999999999999996554321 1 1135699999999999999997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhc
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+...... ...+.+.+.+..+...+.. ..++++..+++.++++.+.+.|++.+. .+..|.
T Consensus 253 ~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~--------------- 316 (389)
T PRK05957 253 EAIKKIQDT-ILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPAN--------------- 316 (389)
T ss_pred HHHHHHHhh-cccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC---------------
Confidence 999876641 1122233444444444443 234566667788999999999988643 222222
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|.++|++++...+..++++.+.
T Consensus 317 ----gg~~~~~~~~~~~~~~~~~~~l~ 339 (389)
T PRK05957 317 ----GAFYCFLKVNTDLNDFELVKQLI 339 (389)
T ss_pred ----eeEEEEEeCCCCCChHHHHHHHH
Confidence 57788999874444566777764
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=226.99 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=165.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|..+...++ ..|.+++.++.+ |++++++.+ ++++|+|++++|+|
T Consensus 91 ~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~d~~~l~~~~-~~~~kli~i~~p~N 164 (373)
T PRK07324 91 GANFLVLYALVEPGDHVISVYPTYQQLYDIPE-----SLGAEVDYWQLKEENGWLPDLDELRRLV-RPNTKLICINNANN 164 (373)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHhC-CCCCcEEEEeCCCC
Confidence 57888999999999999999999999987773 367777777642 789998888 78899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++|+++|+||+|.++.... .+. +..++++|+||.||++|+|+ ||+++++++++.
T Consensus 165 PtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~Ri-G~i~~~~~li~~ 243 (373)
T PRK07324 165 PTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRV-GWIAANEEVIDI 243 (373)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCcccee-EEEecCHHHHHH
Confidence 9999987 8899999999999999999997665432 111 45689999999999999997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+..... ....+.+.+.+..+..++...+. +....+.+.++++.+.+.|++.+. .+..|.
T Consensus 244 ~~~~~~-~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~------------------ 304 (373)
T PRK07324 244 LRKYRD-YTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPK------------------ 304 (373)
T ss_pred HHHHhC-cEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCC------------------
Confidence 988765 22234455555555545543332 334445567888889999987743 455454
Q ss_pred CcceEEEEEeCCHHHHHHHHHHh
Q 020548 224 GFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|+++++.++......+|++++
T Consensus 305 -gg~~~~i~~~~~~~~~~~~~~l 326 (373)
T PRK07324 305 -AVSTSFVKLDVDMPSEDFCLKL 326 (373)
T ss_pred -ceEEEEEEeCCCCCHHHHHHHH
Confidence 4566677776333456677765
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=229.21 Aligned_cols=219 Identities=18% Similarity=0.224 Sum_probs=168.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.++++|||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|+||
T Consensus 126 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~l~~~~-~~~~k~i~i~~p~NP 199 (413)
T PLN00175 126 EAIAATILGLINPGDEVILFAPFYDSYEATLS-----MAGAKIKTVTLRPPDFAVPEDELKAAF-TSKTRAILINTPHNP 199 (413)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEECCcccCCCCHHHHHHhc-CcCceEEEecCCCCC
Confidence 57888888899999999999999999988774 367777777642 689999998 778999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR----LGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+ +++|+++|+++++++|+||+|..+.++. .. .+..++++|+||.|+++|+|+ ||++++++++
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~Ri-G~~v~~~~l~ 278 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHLT 278 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchhe-eeeEeCHHHH
Confidence 999975 6788999999999999999996654321 11 246799999999999999997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+.+..... ....+.+.+.+.++..++... .++....+.+.++++.+.+.|++++..+..|.
T Consensus 279 ~~l~~~~~-~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~----------------- 340 (413)
T PLN00175 279 WGVRQAHS-FLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEVGFKVYPSS----------------- 340 (413)
T ss_pred HHHHHHHh-hccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-----------------
Confidence 98887654 222444555666655555443 33556667789999999999999876655444
Q ss_pred CCcceEEEEEeC--CHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDME--TEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~--~~~~~~~~~~~l~ 247 (324)
+|.++|+.+. +.....+|.+.+.
T Consensus 341 --g~~f~~~~~~~~~~~~~~~~~~~ll 365 (413)
T PLN00175 341 --GTYFVMVDHTPFGFENDIAFCEYLI 365 (413)
T ss_pred --eeEEEEEeccccCCCCHHHHHHHHH
Confidence 5677888874 2223456666653
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=229.72 Aligned_cols=258 Identities=14% Similarity=0.169 Sum_probs=183.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|||
T Consensus 105 ~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~N 178 (389)
T PRK08068 105 AGLVELPQCLMNPGDTILVPDPGYPDYLSGVA-----LARAQFETMPLIAENNFLPDYTKIPEEV-AEKAKLMYLNYPNN 178 (389)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEeecccccCCCCCHHHHHHhc-cccceEEEEECCCC
Confidence 57788888899999999999999999988774 367777776652 678898888 67899999999999
Q ss_pred CcccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+. ++|+++|+++++++|+||+|..+.++. .. .+..++++|+||.||.+|.|+ ||++++++
T Consensus 179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~ 257 (389)
T PRK08068 179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRV-AFAVGNES 257 (389)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcccee-EeEecCHH
Confidence 99999875 577888999999999999996553221 11 135699999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCC--CHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 142 LVNSMMDLHQGALMLLGPTM--NPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
+++.+...... ...+.+ .+.++...+. ...+++..++++.++++.+.+.|++.+..+..|.
T Consensus 258 l~~~l~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~------------- 321 (389)
T PRK08068 258 VIEAINLLQDH---LFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIGWEVDAPK------------- 321 (389)
T ss_pred HHHHHHHHHhh---ccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC-------------
Confidence 99999877652 222222 2333333332 2344566677789999999999999876544333
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
+|.++|+.+++......+.+.+.. +.|+ .+.|+..+. ...++++|++++
T Consensus 322 ------g~~~~~v~~~~~~~~~~~~~~l~~--~~gi-----------~v~pg~~f~-----------~~~~~~iRi~~~- 370 (389)
T PRK08068 322 ------GSFFAWMPVPKGYTSEQFADLLLE--KAHV-----------AVAPGNGFG-----------EHGEGYVRVGLL- 370 (389)
T ss_pred ------eeEEEEEECCCCCCHHHHHHHHHH--hCCE-----------EEecchHhC-----------ccCCCeEEEEEc-
Confidence 466789999743345667777652 1232 223332210 112479999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~ 318 (324)
..+ +.+.++++++.+
T Consensus 371 ~~~-----~~l~~al~~l~~ 385 (389)
T PRK08068 371 TDE-----ERLREAVERIGK 385 (389)
T ss_pred CCH-----HHHHHHHHHHHH
Confidence 532 456666666654
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=223.34 Aligned_cols=217 Identities=16% Similarity=0.173 Sum_probs=175.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+.|..++++++.+||+|+++.|+|..|...++ ..|.++..++. .|++.+.+++ ++++++|++++||||||
T Consensus 86 e~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~-----~~g~~~~~v~~~~~~~d~~~~~~~~-~~~~~lv~i~nPNNPTG 159 (356)
T COG0079 86 ELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-----LAGAEVVKVPLKEFRLDLDAILAAI-RDKTKLVFLCNPNNPTG 159 (356)
T ss_pred HHHHHHHHHhhcCCCEEEEcCCChHHHHHHHH-----hcCCeEEEecccccccCHHHHHHhh-hcCCCEEEEeCCCCCCC
Confidence 46788889999999999999999999998884 47888888877 4789999988 66899999999999999
Q ss_pred cccChHHHHHHHHhc--CCEEEEcCCCCcCCCC-cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 78 AVANIPELSRLAHDK--GVTVVVDNTFSPLVLS-PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~-~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
...+.++|.+++... +.++|+||+|.+|... .. ..++.+++.||||.||.+|.|+ ||+++++++++.+.+.+
T Consensus 160 ~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRl-Gy~ia~~~~i~~l~~vr 238 (356)
T COG0079 160 TLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRV-GYAIANPELIAALNKVR 238 (356)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhce-eeccCCHHHHHHHHHhc
Confidence 999888887777653 7899999999777541 11 2355799999999999999997 99999999999999998
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
.+ +..+.+.+..+..++...+.+....++..+.++++.+.|++.+..-..|+ .++|+.
T Consensus 239 ~p---~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS-------------------~aNFvl 296 (356)
T COG0079 239 PP---FNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPS-------------------QANFVL 296 (356)
T ss_pred CC---CCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCC-------------------CCcEEE
Confidence 73 44555666555555555566777888889999999999999984323466 478999
Q ss_pred EEeCCHHHHHHHHHHhhc
Q 020548 231 LDMETEEKANRLMNYLQN 248 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~ 248 (324)
++++... ...+.+.|..
T Consensus 297 v~~~~~~-~~~l~~~L~~ 313 (356)
T COG0079 297 VRVPDAE-AAALAEALLK 313 (356)
T ss_pred EECCCcc-HHHHHHHHHH
Confidence 9998634 5566777664
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=230.68 Aligned_cols=265 Identities=20% Similarity=0.226 Sum_probs=197.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEe-cCCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNP 75 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~-~~~np 75 (324)
|+|++.+++.+++|||+|++.+|+|++....++ ..|.++..++.+ |+++|++.++..++|+++++ +.|||
T Consensus 165 q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~-----~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNP 239 (459)
T COG1167 165 QQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-----ALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNP 239 (459)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-----HcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCC
Confidence 478999999999999999999999999999994 378888888775 89999999966689999985 49999
Q ss_pred cccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCCccC---------CCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSPAR---------LGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~~~~---------~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+++. ++|.++|++||++||+||.|+.+.++... .+..++++||||.+ .||.|+ ||++++++++
T Consensus 240 tG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l-~PglRl-G~vv~p~~~~ 317 (459)
T COG1167 240 TGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTL-APGLRL-GYVVAPPELI 317 (459)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhc-ccccce-eeeeCCHHHH
Confidence 9999874 59999999999999999999777543211 26889999999999 569997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCC---ceeCCCCCCCchhHHHHH
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~p~~~~~~~~~~~~~ 217 (324)
+.+..... .....++.+.+...+..+..- .++...++.+.++++.+.+.|+++.. .+..|.
T Consensus 318 ~~~~~~k~-~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~------------ 384 (459)
T COG1167 318 EKLLRLKQ-AADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPE------------ 384 (459)
T ss_pred HHHHHHHH-HhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCC------------
Confidence 99987765 333455556655555555421 22344555679999999999999853 455554
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccc-cccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS-GSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
+|.++|++++...+...+.+.+.. .|+ ...| +..+.. .+...+.+|+|+
T Consensus 385 -------gG~flwl~l~~~~~~~~l~~~a~~---~gv-----------~i~~~g~~f~~---------~~~~~~~~Rl~~ 434 (459)
T COG1167 385 -------GGLFLWLELPEGIDARELLAAALE---KGV-----------VVTPLGSAFSA---------DGDPRNGLRLSF 434 (459)
T ss_pred -------ceEEEEEEcCCCCCHHHHHHHHHH---CCC-----------EEEcCCccccC---------CCCCCCeEEEEc
Confidence 689999999966566677776663 222 1122 222211 011356999999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 020548 297 GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ..+.+++.+.+....+.+
T Consensus 435 s-~~~~e~i~~gi~~l~~~~ 453 (459)
T COG1167 435 S-SPSEEEIEEGIKRLAALL 453 (459)
T ss_pred C-CCCHHHHHHHHHHHHHHH
Confidence 9 777666655555544444
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=229.36 Aligned_cols=216 Identities=13% Similarity=0.138 Sum_probs=160.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ ..+++++++++|||
T Consensus 103 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~p~N 176 (388)
T PRK07366 103 EGTAHLPLAVLNPGDFALLLDPGYPSHAGGVY-----LAGGQIYPMPLRAENDFLPVFADIPTEV-LAQARLMVLSYPHN 176 (388)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEECCCccCCCCCHHHHHHhh-cccceEEEEeCCCC
Confidence 57888999999999999999999999988874 367777776553 567887777 66899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCC----CCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARL----GADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++. ... ...++++|+||.||.+|.|+ ||+++++
T Consensus 177 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRi-G~~v~~~ 255 (388)
T PRK07366 177 PTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRI-GFAIGNA 255 (388)
T ss_pred CCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhh-eehcCCH
Confidence 9999976 5577788999999999999997664321 111 24588999999999999997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCC--HHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMN--PKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
++++.+...... ...+..+ +..+...+. ...+++..++.+.++++.+.+.|++++..+..|.
T Consensus 256 ~li~~l~~~~~~---~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~------------ 320 (388)
T PRK07366 256 QLIQALRQVKAV---VDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIGWPVPLPE------------ 320 (388)
T ss_pred HHHHHHHHHHhh---cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC------------
Confidence 999999877652 1112212 222222222 2234556667789999999999998876544454
Q ss_pred HhccCCCcceEEEEEeCCH--HHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETE--EKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l 246 (324)
+|.++|+++++. ....++.+.+
T Consensus 321 -------~g~f~~~~~~~~~~~~~~~~~~~l 344 (388)
T PRK07366 321 -------ATMYVWAKLPEPWQGNSVEFCTQL 344 (388)
T ss_pred -------eeEEEEEECCcccCCCHHHHHHHH
Confidence 688999999742 1244565554
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=222.93 Aligned_cols=206 Identities=16% Similarity=0.212 Sum_probs=158.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++.+||+|++++|+|..+...++ ..|.++..++.+ |++++++++ ++++++|++++|+||
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~NP 174 (384)
T PRK12414 101 EGLYAAISALVHPGDEVIYFEPSFDSYAPIVR-----LQGATPVAIKLSPEDFRVNWDEVAAAI-TPRTRMIIVNTPHNP 174 (384)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HcCCEEEEEecCccccccCHHHHHhhc-CcccEEEEEcCCCCC
Confidence 57888899999999999999999999887774 256666666542 789999988 778999999999999
Q ss_pred ccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-C----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+. ++++|+++|+++|+++|+||+|..+.++ +. . .+..++++|+||.||.+|+|+ ||+++++++
T Consensus 175 TG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRi-G~~v~~~~l 253 (384)
T PRK12414 175 SATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRV-GYCLAPAEL 253 (384)
T ss_pred CCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceE-EEEecCHHH
Confidence 99986 4778899999999999999999665432 11 1 135699999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
++.+..... ....+.+.+.+.++..++..........+.++++++.+.+.|++.+..+..|.
T Consensus 254 ~~~l~~~~~-~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~----------------- 315 (384)
T PRK12414 254 MDEIRKVHQ-FMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGSRFELLPSE----------------- 315 (384)
T ss_pred HHHHHHHHh-heecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhCCCeecCCC-----------------
Confidence 998887654 12244455666555555544333444556678999999999999876554333
Q ss_pred CCcceEEEEEeC
Q 020548 223 YGFGGLLCLDME 234 (324)
Q Consensus 223 ~~~g~~~~~~l~ 234 (324)
+|.++|+.++
T Consensus 316 --gg~~~~~~~~ 325 (384)
T PRK12414 316 --GSFFMLARFR 325 (384)
T ss_pred --cceEEEEccc
Confidence 5677777775
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=223.13 Aligned_cols=218 Identities=20% Similarity=0.223 Sum_probs=161.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++++|||+|++++|+|+.+...+. ..|.++..++. .|++++++++ +++++++++++|||
T Consensus 103 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~N 176 (387)
T PRK08960 103 GALLLASSLLVDPGKHWLLADPGYPCNRHFLR-----LVEGAAQLVPVGPDSRYQLTPALVERHW-NADTVGALVASPAN 176 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCeEEEEecCcccCCCCCHHHHHHHh-CccceEEEEECCCC
Confidence 57888899999999999999999999988774 24556555543 2688999988 77889999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ... ...++++|+||.+|++|.|+ ||+++++++++.
T Consensus 177 PtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~~~~~~~~~~ 255 (387)
T PRK08960 177 PTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRL-GWLVAPPAAVPE 255 (387)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEE-EEEEcCHHHHHH
Confidence 9999987 5577778999999999999996664321 112 35689999999999999997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcC-c-ccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSER-I-PHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+...... ...+.+.+.+.++..++.. . ..+....+.+.++++.+.+.|++++..+ ..|.
T Consensus 256 ~~~~~~~-~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~----------------- 317 (387)
T PRK08960 256 LEKLAQN-LYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQ----------------- 317 (387)
T ss_pred HHHHHhh-hccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCC-----------------
Confidence 8776541 1123344555544444432 2 3344556667889999999999887543 2344
Q ss_pred CCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 223 YGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 223 ~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|++++. ..+...|.+.+
T Consensus 318 --g~~f~~~~~~~~~~~~~~~~~~l 340 (387)
T PRK08960 318 --GAFYLYADISAFGGDAFAFCRHF 340 (387)
T ss_pred --eeEEEEEeccccCCCHHHHHHHH
Confidence 57788999863 12345666554
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=221.90 Aligned_cols=274 Identities=19% Similarity=0.233 Sum_probs=202.1
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
.||+.+..++ +++||+|++++-+|++....|+....+ .|.++++++.+ +.+++++.+ +++||+|.+++.+
T Consensus 95 ~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~-~Ga~v~~i~~~~~g~~~~~~~~~~i-~~~Tklvais~vS 172 (405)
T COG0520 95 EALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR-TGAKVRVIPLDDDGLLDLDALEKLI-TPKTKLVALSHVS 172 (405)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHh-cCcEEEEEecCCCCCcCHHHHHHhc-CCCceEEEEECcc
Confidence 4788888888 689999999999999999999888776 79999998864 689999988 9999999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.||.+.|+++|+++||++|+++++|.+| .....+..++++|++++|.|||+.+|.+ .|++++++++.+.+.+...
T Consensus 173 n~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~G--iGvLy~r~~~l~~l~P~~~ 250 (405)
T COG0520 173 NVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTG--IGVLYVRKELLEELEPFLG 250 (405)
T ss_pred ccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCc--eEEEEEchHHHhhcCCccc
Confidence 99999999999999999999999999998 3344566677999999999997666622 5999999999998855332
Q ss_pred h------------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCC
Q 020548 152 G------------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLE 207 (324)
Q Consensus 152 ~------------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~ 207 (324)
+ ...+..+++.......+...++. +....++.++..+++.+.|++.+. ++..|..
T Consensus 251 gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~- 329 (405)
T COG0520 251 GGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD- 329 (405)
T ss_pred CCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-
Confidence 1 12233344433332222222222 223334458888999999999875 6665551
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 285 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (324)
..++++++|.+++ ..+...+++.-++ ++..|..+ +.+.+ +..
T Consensus 330 ---------------~~r~~~vsF~v~~~~~~dv~~~L~~~gI-------~vr~g~~c------a~p~~--------~~~ 373 (405)
T COG0520 330 ---------------ADRGGIVSFNVKGIHPHDVATLLDEKGI-------AVRAGHHC------AQPLH--------RLL 373 (405)
T ss_pred ---------------ccCceEEEEEeCCCCHHHHHHHHHhCCe-------EEEecccc------ccHHH--------Hhc
Confidence 0268899999984 3445555555443 44444332 22111 112
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+.+ ..+|+|++ .+|++++++.|.++|+++.+
T Consensus 374 ~~~-~~iR~S~~-~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 374 GVD-ATIRASLH-LYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred CCC-CceEEEEe-ecCCHHHHHHHHHHHHHHhh
Confidence 333 45999999 99999999999999998753
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=224.95 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=161.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++..++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .+++++|++++|||
T Consensus 104 ~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~N 177 (385)
T PRK09276 104 EGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTI-----FAGGEPYFMPLKEENGFLPDLDAIPEDV-AKKAKLMFINYPNN 177 (385)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcChHHHHH-----HcCCEEEEEecCCCCCCcCCHHHHHHhc-cccceEEEEeCCCC
Confidence 57888889999999999999999999988774 367777666542 688888888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-AR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++ + .. .+.+++++|+||.||.+|.|+ ||++++++
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~i~~~~ 256 (385)
T PRK09276 178 PTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRI-GFAVGNAD 256 (385)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhh-eeeeCCHH
Confidence 9999987 578888999999999999999655321 1 11 145689999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+...... ...+.+.+.+..+..++.. ..+++...+++.++++.+.+.|++.+.++..|.
T Consensus 257 l~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------------- 320 (385)
T PRK09276 257 LIAGLGKVKSN-VDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKLGLEVEPPK--------------- 320 (385)
T ss_pred HHHHHHHHHhh-ccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---------------
Confidence 99998876541 1111222333344444433 233455566678889999999998866554343
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+.+++..+..++.+.+
T Consensus 321 ----~~~~~~v~~~~~~~~~~l~~~l 342 (385)
T PRK09276 321 ----ATFYVWAPVPKGYTSAEFATLL 342 (385)
T ss_pred ----cceEEEEECCCCCCHHHHHHHH
Confidence 4667899987433455666654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=220.84 Aligned_cols=218 Identities=20% Similarity=0.186 Sum_probs=165.7
Q ss_pred chHHHHHHHccCCC---CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++.+++++| |+|++++|+|+.+...++ ..|.++..++.+ |++++++++ +++++++++++
T Consensus 71 ~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~ 144 (350)
T TIGR03537 71 EAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGAL-----FAGGEPTAVKLKKEDGFLLRLEKVEKSI-LEETKIVWINY 144 (350)
T ss_pred HHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHH-----hcCCEEEEcccCcccCCccCHHHHHHhh-hhccEEEEEeC
Confidence 47888888889887 699999999999998884 378888777652 789999988 67899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c---c--CCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P---A--RLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~---~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|+||||.+.+ +++|+++|+++|+++|+||+|..+... + . +.+..+++.|+||.+|++|.|+ ||++++++
T Consensus 145 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRi-G~~~~~~~ 223 (350)
T TIGR03537 145 PHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRS-GFVAGDEK 223 (350)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccc-eeeecCHH
Confidence 9999999987 889999999999999999999654321 1 1 2246799999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCC--CHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTM--NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+.+.+...... ...+.+ .+..+...+....++....+++.++++.+.+.|++.+.++..|.
T Consensus 224 ~~~~~~~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~-------------- 286 (350)
T TIGR03537 224 LISFLRKLRAN---FGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPD-------------- 286 (350)
T ss_pred HHHHHHHHHHh---hccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC--------------
Confidence 99988876652 122222 22333233333334555666778889999999998876554343
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|.++|+.++.......+++.+..
T Consensus 287 -----g~~~~~~~~~~~~~~~~l~~~L~~ 310 (350)
T TIGR03537 287 -----ATFYLWVKVPSGIDAKDYALRLLE 310 (350)
T ss_pred -----eEEEEEEECCCCCCHHHHHHHHHH
Confidence 566789999754345677777764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=224.54 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=160.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++++|||+|++++|+|+.+...+. ..|.++..++.+ |++++++.+ +++++++++++|+|
T Consensus 108 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~P~N 181 (394)
T PRK05942 108 EGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL-----IAGAQIYPIILKPENDWLIDLSSIPEEV-AQQAKILYFNYPSN 181 (394)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEEEeecCCccCCccCHHHHHHhc-cccceEEEEcCCCC
Confidence 57888888899999999999999999887663 267777776542 788999988 78999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-C----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|.++|+++|+++|+||+|..+..+ +. . .+..++++|+||.|+.+|.|+ ||++++++
T Consensus 182 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRi-G~i~~~~~ 260 (394)
T PRK05942 182 PTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRV-GFVVGNRH 260 (394)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhhe-eeeecCHH
Confidence 9999987 778889999999999999999655432 11 1 134688999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+...... ...+.+++.+..+..++.... .+....+++.++++.+.+.|++.+..+..|.
T Consensus 261 l~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--------------- 324 (394)
T PRK05942 261 IIQGLRTLKTN-LDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPPTK--------------- 324 (394)
T ss_pred HHHHHHHHHhh-cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC---------------
Confidence 99999876541 112233344444444454332 2445556678889999999988776544333
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHH
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMN 244 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~ 244 (324)
+|.++|+.++......++..
T Consensus 325 ----~~~f~~~~~~~~~~~~~~~~ 344 (394)
T PRK05942 325 ----ATMYLWVPCPVGMGSTDFAL 344 (394)
T ss_pred ----eeeEEEEECCCCCCHHHHHH
Confidence 56689999874222334444
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=222.89 Aligned_cols=254 Identities=15% Similarity=0.154 Sum_probs=184.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++.++++++|++++|+|||
T Consensus 114 ~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPT 188 (380)
T PLN03026 114 ELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA-----VNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPD 188 (380)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 47788888889999999999999998877663 268887777652 78999888755789999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.+.+.+++.++++.. +++|+||+|..+.... ...++.++++|+||.||++|+|+ ||+++++++++.+....
T Consensus 189 G~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRi-Gy~~~~~~~i~~l~~~~ 266 (380)
T PLN03026 189 GSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRV-GYGAFPLSIIEYLWRAK 266 (380)
T ss_pred CCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccc-eeeecCHHHHHHHHHhc
Confidence 9999999999999765 8999999996654321 12357899999999999999997 99999999999888766
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
.. +..+.+.+.++..++....++....+.+.++++.+.+.|++.+.....|. .|++++
T Consensus 267 ~~---~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-------------------~~~f~~ 324 (380)
T PLN03026 267 QP---YNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEPYPS-------------------DANFIL 324 (380)
T ss_pred CC---CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeECCC-------------------CCeEEE
Confidence 52 23344444554445544344556666778899999999998865222454 578999
Q ss_pred EEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 231 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.++...+...+.+.+.. .|+ .+ .+... .+ .++++|+|+| . .+..+.|.
T Consensus 325 ~~~~~~~~~~~~~~~l~~---~gI-~v----------~~~~~------------~~-~~~~lRis~~-~---~~~~~~l~ 373 (380)
T PLN03026 325 CRVTSGRDAKKLKEDLAK---MGV-MV----------RHYNS------------KE-LKGYIRVSVG-K---PEHTDALM 373 (380)
T ss_pred EECCCCCCHHHHHHHHHH---CCe-EE----------EECCC------------CC-CCCEEEEecC-C---HHHHHHHH
Confidence 998743335566666653 333 11 11110 01 1478999999 3 23456666
Q ss_pred HHHHh
Q 020548 311 KALSR 315 (324)
Q Consensus 311 ~~l~~ 315 (324)
++|+.
T Consensus 374 ~al~~ 378 (380)
T PLN03026 374 EALKQ 378 (380)
T ss_pred HHHHH
Confidence 66654
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=216.19 Aligned_cols=206 Identities=24% Similarity=0.322 Sum_probs=167.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------------CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------------d~~~l~~~l~~~~~~~v~ 68 (324)
+||..++++++++||+|++.+|.|+.|....+ +.|...++++.. |.++++.++ +++||+|+
T Consensus 104 ~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~-----maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~-t~kTk~Ii 177 (420)
T KOG0257|consen 104 EAISSALLGLLNPGDEVIVFEPFFDCYIPQVV-----MAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKI-TEKTKAII 177 (420)
T ss_pred HHHHHHHHHHcCCCCEEEEecCcchhhhhHHh-----hcCCcceeeccccccccccCccccCChHHHHhhc-cCCccEEE
Confidence 57888899999999999999999999998883 466666666542 899999999 99999999
Q ss_pred EecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCccC----------CCCcEEEeCCccccccCCCeeEEE
Q 020548 69 FESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPAR----------LGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 69 ~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~----------~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+++||||||.+. .+++|+++|++||.++|.||+|..+..++.+ ....+-++|++|+||+.|+|+ ||
T Consensus 178 ~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrl-GW 256 (420)
T KOG0257|consen 178 LNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRL-GW 256 (420)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeee-ee
Confidence 999999999996 4889999999999999999999666554432 257899999999999999998 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-Cc--------ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RI--------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
+++++.++..+....+ ...+..+++.+.+.+.+.. .. .......+.++++++.+.+.|.+.|+++..|.
T Consensus 257 ~igp~~L~~~~~~vh~-~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~- 334 (420)
T KOG0257|consen 257 AIGPKHLYSALFPVHQ-NFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPE- 334 (420)
T ss_pred eechHHhhhhHHHHhh-ccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-
Confidence 9999999999988876 2234445555554444322 11 22345778899999999999999999888777
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
++.++|.++.
T Consensus 335 ------------------gayyl~adfs 344 (420)
T KOG0257|consen 335 ------------------GAYYLWADFS 344 (420)
T ss_pred ------------------CceEEEEecc
Confidence 6888888887
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=223.34 Aligned_cols=218 Identities=19% Similarity=0.249 Sum_probs=164.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..+++++++|||+|++++|+|+.+...++ ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 92 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~N 165 (378)
T PRK07682 92 QALDVAMRAIINPGDEVLIVEPSFVSYAPLVT-----LAGGVPVPVATTLENEFKVQPAQIEAAI-TAKTKAILLCSPNN 165 (378)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEeecCCccCCCCCHHHHHhhc-CcccEEEEEECCCC
Confidence 57888999999999999999999999887774 25666555543 2789999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|+++++++|+||+|..+.+++ .. .+.++++.|+||.|+.+|+|+ ||+++++++
T Consensus 166 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~~~~~~~~ 244 (378)
T PRK07682 166 PTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRL-GFIAAPVYF 244 (378)
T ss_pred CcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhh-hhhhcCHHH
Confidence 9999975 7789999999999999999997664321 11 146799999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++... .++....+.++++++.+.+.|++++..+..|.
T Consensus 245 i~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~---------------- 307 (378)
T PRK07682 245 SEAMLKIHQ-YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG---------------- 307 (378)
T ss_pred HHHHHHHHH-hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCCCC----------------
Confidence 999877654 212233444454444455432 33555667789999999999999876655444
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 222 EYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|..++. ..+...+.+.+
T Consensus 308 ---g~~~~~~~~~~~~~~~~~~~~~l 330 (378)
T PRK07682 308 ---GAFYAFPSISSTGLSSEEFAEQL 330 (378)
T ss_pred ---eeEEEEEeccCCCCCHHHHHHHH
Confidence 56677777742 22345666664
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=221.58 Aligned_cols=218 Identities=18% Similarity=0.155 Sum_probs=163.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ +++++++++++|+
T Consensus 95 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~p~ 168 (382)
T PRK06108 95 QALMLAAQALVGPGDEVVAVTPLWPNLVAAPK-----ILGARVVCVPLDFGGGGWTLDLDRLLAAI-TPRTRALFINSPN 168 (382)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HCCCEEEEeeCCCCCCCccCCHHHHHHhc-CccceEEEEECCC
Confidence 57888888889999999999999999887774 267777776552 689999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---c----cC----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P----AR----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+.+ +++|+++|+++|+++|+||+|..+... . .. .+.+++++|+||.|+++|.|+ ||++++
T Consensus 169 NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~~~~~ 247 (382)
T PRK06108 169 NPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRL-GWLVAP 247 (382)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccce-eeeeCC
Confidence 99999875 678899999999999999999665432 0 11 146799999999999999997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+..... ....+.+.+.+.++..++... ..++...+++.++++.+.+.|++. +..+..|.
T Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------------ 314 (382)
T PRK06108 248 PALGQVLEKLIE-YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPD------------ 314 (382)
T ss_pred HHHHHHHHHHHH-hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC------------
Confidence 999998876654 111223334444444444432 335566677788899999999887 34444333
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+.+++..+...+.+.+
T Consensus 315 -------~g~~~~~~l~~~~~~~~~~~~l 336 (382)
T PRK06108 315 -------GAMYAFFRIPGVTDSLALAKRL 336 (382)
T ss_pred -------eeEEEEEeCCCCCCHHHHHHHH
Confidence 5667899987433455666665
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=224.40 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=166.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++.+ |++++++.+ ++++++|++++|+||
T Consensus 102 ~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NP 175 (386)
T PRK09082 102 EALFAAILALVRPGDEVIVFDPSYDSYAPAIE-----LAGGRAVRVALQPPDFRVDWQRFAAAI-SPRTRLIILNTPHNP 175 (386)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCcccccCCHHHHHHhc-CccceEEEEeCCCCC
Confidence 57888888889999999999999999988774 257777777653 789999998 778999999999999
Q ss_pred ccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+. ++++|.++|+++|+++|+|++|..+.++. .. .+..++++|+||.||++|+|+ ||+++++++
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~iv~~~~l 254 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKV-GYCVAPAAL 254 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhh-hhhhCCHHH
Confidence 99985 57889999999999999999996554311 11 246799999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++. ...+++...+.++++++.+.+.|++.+..+..|.
T Consensus 255 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~---------------- 317 (386)
T PRK09082 255 SAEFRKVHQ-YNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANSRFKLLPCE---------------- 317 (386)
T ss_pred HHHHHHHHh-hhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----------------
Confidence 998887654 1123444555555444554 3333555556678999999999998776554333
Q ss_pred CCCcceEEEEEeCC--HHHHHHHHHHh
Q 020548 222 EYGFGGLLCLDMET--EEKANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~--~~~~~~~~~~l 246 (324)
+|.++|+.++. ..+...|.+.+
T Consensus 318 ---g~~~~~~~~~~~~~~~~~~~~~~l 341 (386)
T PRK09082 318 ---GTYFQLVDYSAISDLDDVEFCQWL 341 (386)
T ss_pred ---eeEEEEEeccccCCCCHHHHHHHH
Confidence 57788888862 23455666664
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=220.71 Aligned_cols=218 Identities=19% Similarity=0.228 Sum_probs=162.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ +++++++++++|+||
T Consensus 98 ~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NP 171 (387)
T PRK08912 98 EALAAALLALVEPGDEVVLFQPLYDAYLPLIR-----RAGGVPRLVRLEPPHWRLPRAALAAAF-SPRTKAVLLNNPLNP 171 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCcccCcCCHHHHHHHh-CccceEEEEeCCCCC
Confidence 57888888889999999999999999988774 367777666542 689999988 778999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-c---C-CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-A---R-LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~---~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+ +++|.++|+++++++|+||+|..+.+. + . . .+.+++++|+||.||.+|.|+ ||+++++++
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~ 250 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKV-GFVCAAPPL 250 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCcee-EEEecCHHH
Confidence 999986 667899999999999999999654322 1 1 1 246899999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... .....+...+.++...+.. ..++.+..+++.++++.+.+.|++.+..+..|.
T Consensus 251 ~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------- 313 (387)
T PRK08912 251 LRVLAKAHQF-LTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQ---------------- 313 (387)
T ss_pred HHHHHHHHhh-ccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----------------
Confidence 9888766541 1122222233333333322 233555667789999999999999876554333
Q ss_pred CCCcceEEEEEeCC---HHHHHHHHHHh
Q 020548 222 EYGFGGLLCLDMET---EEKANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~---~~~~~~~~~~l 246 (324)
+|.++|+.++. ..+..++.+.+
T Consensus 314 ---g~~~l~~~l~~~~~~~~~~~~~~~l 338 (387)
T PRK08912 314 ---GTYFLTVDLAPLGLAEDDVAFCRRL 338 (387)
T ss_pred ---cceEEEecccccCCCCCHHHHHHHH
Confidence 56788888863 23455666664
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=221.91 Aligned_cols=215 Identities=19% Similarity=0.174 Sum_probs=159.2
Q ss_pred chHHHHHHHccCC---CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~---gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..+++++++| ||+|++++|+|+.+...++ ..|.++..++.+ |++++++.+ .++++++++++
T Consensus 101 ~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~vp~~~~~~~~~d~~~l~~~~-~~~~k~i~l~n 174 (396)
T PRK09147 101 EALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL-----LAGAEPYFLNCDPANNFAPDFDAVPAEV-WARTQLLFVCS 174 (396)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHH-----hcCCEEEEeccCccccCccCHHHHHHHH-hhccEEEEEcC
Confidence 5788899999999 9999999999999988773 367788777652 688998877 66899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c---------CCCCcEEEeCCccccccCCCee
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A---------RLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~---------~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
||||||.+.+ +++|+++|++++++||+||+|..+.++. . ..+..++++|+||.++++|+|+
T Consensus 175 P~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRi 254 (396)
T PRK09147 175 PGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRS 254 (396)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcccee
Confidence 9999999985 6788888999999999999996653211 0 1245699999999999999997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
||+++++++++.+...... ...+.+.+.+.++...+.....+....+.++++++.+.+.|++. ..+..|.
T Consensus 255 -G~~~~~~~l~~~~~~~~~~-~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~------- 324 (396)
T PRK09147 255 -GFVAGDAALLKKFLLYRTY-HGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV-LDVQLPD------- 324 (396)
T ss_pred -eeecCCHHHHHHHHHHhhh-cccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCC-------
Confidence 9999999999988766541 11122233333333333322345556677788999999999875 4433344
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|++++. ....+.+.+
T Consensus 325 ------------~g~f~~~~~~~--~~~~~~~~l 344 (396)
T PRK09147 325 ------------AGFYLWAKVPG--DDTEFARRL 344 (396)
T ss_pred ------------eeEEEEEECCC--CHHHHHHHH
Confidence 68899999871 234455554
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=219.63 Aligned_cols=218 Identities=15% Similarity=0.201 Sum_probs=162.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++. .|++++++.+ ++++++|++++|||
T Consensus 100 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~N 173 (384)
T PRK06348 100 HGMYLALQSILDPGDEVIIHEPYFTPYKDQIE-----MVGGKPIILETYEEDGFQINVKKLEALI-TSKTKAIILNSPNN 173 (384)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEEecCCcCcCCcCCHHHHHHhh-CcCccEEEEeCCCC
Confidence 57888999999999999999999999998884 25666666543 2789999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cC--CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P---AR--LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|.++|+++|+++|+||+|..+..+ + .. .+..++++|+||.++++|.|+ ||+++++++
T Consensus 174 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi-G~~v~~~~~ 252 (384)
T PRK06348 174 PTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRI-GYVIAPDYI 252 (384)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccc-eeeecCHHH
Confidence 9999985 678888899999999999999766422 1 11 246799999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
.+.+..... ....+.+.+.+.++..++...+. ++...+.++++++.+.+.|++.+. .+..|.
T Consensus 253 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~--------------- 316 (384)
T PRK06348 253 IETAKIINE-GICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPK--------------- 316 (384)
T ss_pred HHHHHHHHH-hccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC---------------
Confidence 888877654 11233444555555545544332 445556678888999999987633 444333
Q ss_pred cCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|++++. ..+...+.+.+
T Consensus 317 ----gg~~~~~~~~~~~~~~~~l~~~l 339 (384)
T PRK06348 317 ----GSIYAFINIKKTGLSSVEFCEKL 339 (384)
T ss_pred ----eeEEEEEecccCCCCHHHHHHHH
Confidence 56778998862 23345566654
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=219.83 Aligned_cols=219 Identities=12% Similarity=0.092 Sum_probs=159.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHH----HHHHhhhc--CCceEE
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHE----MVNSAIVQ--GRTKVL 67 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~----~l~~~l~~--~~~~~v 67 (324)
++|+..+++++++|||.|++++|+|+.+...++ ..|.++..++. .|++ .+++++++ .+++++
T Consensus 105 ~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i 179 (403)
T PRK08636 105 KEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFI-----LAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYV 179 (403)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEE
Confidence 368899999999999999999999999988874 36777777653 1444 45665532 578999
Q ss_pred EEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC----CCcEEEeCCccccccCCCeeEE
Q 020548 68 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL----GADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 68 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~----~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++++||||||.+++ +++|+++|++++++||+||+|..+.++. ... +..++++|+||.|+.+|.|+ |
T Consensus 180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G 258 (403)
T PRK08636 180 VVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRV-G 258 (403)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCcccee-e
Confidence 99999999999986 5688889999999999999996654321 111 24467899999999999997 9
Q ss_pred EEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 135 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
|+++++++++.+..... ....+.+++.+..+..++... .++....+.+.++++.+.+.|++.+..+..|.
T Consensus 259 ~iv~~~~li~~~~~~~~-~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~-------- 329 (403)
T PRK08636 259 FVVGNKKLVGALKKIKS-WLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANAGWELQKPR-------- 329 (403)
T ss_pred eeeCCHHHHHHHHHHHH-HhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC--------
Confidence 99999999998877654 111233444454444444322 23445556678899999999998765544444
Q ss_pred HHHHHhccCCCcceEEEEEeCCH---HHHHHHHHH
Q 020548 214 LLKSMANKEYGFGGLLCLDMETE---EKANRLMNY 245 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~ 245 (324)
+|.++|+.+++. .....+.+.
T Consensus 330 -----------~g~~~~~~l~~~~~~~~~~~l~~~ 353 (403)
T PRK08636 330 -----------ASMFVWAKIPEPARHLGSLEFSKQ 353 (403)
T ss_pred -----------cceEEEEECCCccCCCCHHHHHHH
Confidence 688999999742 123455554
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=218.78 Aligned_cols=208 Identities=13% Similarity=0.108 Sum_probs=156.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh--cCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV--QGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~--~~~~~~v~~~~~~np 75 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ .++++++.++ .++++++++++||||
T Consensus 103 ~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NP 177 (405)
T PRK09148 103 EGFANMAQAITAPGDVILCPNPSYPIHAFGFI-----MAGGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNP 177 (405)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----hcCCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCC
Confidence 57888999999999999999999999987773 268888777653 3344444442 367899999999999
Q ss_pred cccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC----CCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+. ++|.++|+++|+++|+||+|..+.++ .... +..++++|+||.++.+|+|+ ||+++++++
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~-G~~v~~~~~ 256 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRM-GFAVGNERL 256 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchhe-eeeeCCHHH
Confidence 9999875 67888999999999999999665421 1111 34578999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++... .+++...+.++++++.+.+.|++.+..+..|.
T Consensus 257 i~~l~~~~~-~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~---------------- 319 (405)
T PRK09148 257 IAALTRVKS-YLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAGWDIPPPA---------------- 319 (405)
T ss_pred HHHHHHHHH-HhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCC----------------
Confidence 998887654 111333455555555555432 33455566779999999999999876544344
Q ss_pred CCCcceEEEEEeCC
Q 020548 222 EYGFGGLLCLDMET 235 (324)
Q Consensus 222 ~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 320 ---~g~f~~~~l~~ 330 (405)
T PRK09148 320 ---ASMFAWAPIPE 330 (405)
T ss_pred ---eeEEEEEECCC
Confidence 67899999873
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=218.22 Aligned_cols=252 Identities=20% Similarity=0.220 Sum_probs=181.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+++..++++++++||+|++++|+|+.+...+. ..|.++..++.+ |++++++.+ +++++++++++|+||||
T Consensus 92 ~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~i~~p~NPtG 165 (359)
T PRK03158 92 EVIQMISRALLNPGTNTVMAEPTFSQYRHNAI-----IEGAEVREVPLKDGGHDLEAMLKAI-DEQTKIVWICNPNNPTG 165 (359)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEEecCCCCcCHHHHHHhc-CCCCCEEEEeCCCCCCC
Confidence 57788888889999999999999999887763 257777777653 789999888 77899999999999999
Q ss_pred cccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc---c------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP---A------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~---~------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
.+.+.+++.++++. +|+++|+||+|..+.... . ..+.+++++|+||.||++|.|+ ||+++++++++.+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~v~~~~~~~~~ 244 (359)
T PRK03158 166 TYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRV-GYGIASEELIEKL 244 (359)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhh-ehhcCCHHHHHHH
Confidence 99999998888876 599999999996654221 1 1257899999999999899997 9999999999998
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...... ...+.+.+.++..++....+++...+.+.++++.+.+.|++.+..+. |. .|
T Consensus 245 ~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------------------~g 301 (359)
T PRK03158 245 NIARPP---FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEYGLFYY-PS-------------------QT 301 (359)
T ss_pred HHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeC-CC-------------------cC
Confidence 876541 33444555555555544344555555667888889999988865443 43 46
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
.++|+.++. ....+.+.+.. .|+ . +.|+..+ + .++++|+|++ . .+..
T Consensus 302 ~~i~~~~~~--~~~~~~~~l~~---~gv-~----------v~~g~~f------------~-~~~~iRi~~~-~---~~~~ 348 (359)
T PRK03158 302 NFIFVDTGR--DANELFEALLK---KGY-I----------VRSGAAL------------G-FPTGVRITIG-L---KEQN 348 (359)
T ss_pred cEEEEECCC--CHHHHHHHHHH---CCe-E----------EeeCCCC------------C-CCCeEEEecC-C---HHHH
Confidence 788988852 24456666553 232 2 1232211 2 1478999999 3 3334
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+.+
T Consensus 349 ~~l~~al~~~ 358 (359)
T PRK03158 349 DKIIELLKEL 358 (359)
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-28 Score=221.18 Aligned_cols=206 Identities=18% Similarity=0.171 Sum_probs=154.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+||..++.++++|||.|++++|+|+.+...+.. ..|.++..++.+ |++++++++++ .+++++++
T Consensus 122 ~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~----~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l 197 (468)
T PLN02450 122 SANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW----RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLI 197 (468)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCchHHHHhh----cCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 578899999999999999999999999876631 257777777642 67888888732 37899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c----c------------CCCCcEEEeCCccccccC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P----A------------RLGADVVVHSISKFISGG 128 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~----~------------~~~~d~~~~S~sK~~~~~ 128 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|+.+.+. + . ..+..++++|+||.|+++
T Consensus 198 ~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~ 277 (468)
T PLN02450 198 TNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLP 277 (468)
T ss_pred ecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCC
Confidence 999999999986 567888899999999999999654321 1 1 124679999999999999
Q ss_pred CCeeEEEEEcChh-HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 129 ADIIAGAVCGPAN-LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 129 g~r~~G~i~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
|+|+ ||++++++ +.+.+..... . ...+.+.+.++..++.... .+...++++.++++.+.+.|++.+..+..
T Consensus 278 GlRi-G~li~~~~~l~~~~~~~~~-~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~ 353 (468)
T PLN02450 278 GFRV-GAIYSNDEMVVSAATKMSS-F--GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLK 353 (468)
T ss_pred CccE-EEEEECCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 9997 99999754 5565555433 1 2234555655555655432 24556677899999999999998765543
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|. +|.++|+.++
T Consensus 354 ~~-------------------~g~flwi~l~ 365 (468)
T PLN02450 354 SN-------------------AGLFCWVDMR 365 (468)
T ss_pred CC-------------------ceEEEEEEch
Confidence 33 6779999986
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-28 Score=216.53 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=149.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+.+...+. ..|.++.+++.+ |.+++++.+ +++++++++++|+||
T Consensus 100 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~i~i~~p~NP 173 (387)
T PRK07683 100 EAIDIAFRTILEPGTEVILPAPIYPGYEPIIR-----LCGAKPVFIDTRSTGFRLTAEALENAI-TEKTRCVVLPYPSNP 173 (387)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCccchHHHHH-----HcCCEEEEeecCcccCCCCHHHHHHhc-CcCceEEEEeCCCCC
Confidence 57888888889999999999999999888773 368888887653 568899888 778999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c-cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-AR----LGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+ +++|+++|+++|+++|+||+|..+... + .. .+.+++++|+||.||.||.|+ ||++++++++
T Consensus 174 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRi-G~i~~~~~l~ 252 (387)
T PRK07683 174 TGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRI-GFLFAPSYLA 252 (387)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcccee-EEEEcCHHHH
Confidence 999975 778899999999999999999665322 1 11 146799999999999899997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+.+..... ....+.+.+.+..+..++.. ..+++..++++.++++.+.+.|++.+..+..|.
T Consensus 253 ~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (387)
T PRK07683 253 KHILKVHQ-YNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPT 314 (387)
T ss_pred HHHHHHHH-hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 98886643 11122334444444444433 233445556678899999999988765544343
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=219.94 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=178.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
++|..++++++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++ +++++++++++||||||
T Consensus 92 e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~d~~~l~~~~-~~~~~~v~i~~P~NPTG 165 (366)
T PRK01533 92 EVIQIISRAVLKAGDNIVTAGATFPQYRHHAI-----IEGCEVKEVALNNGVYDLDEISSVV-DNDTKIVWICNPNNPTG 165 (366)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-----HcCCEEEEeecCCCCcCHHHHHHHh-CcCCcEEEEeCCCCCCC
Confidence 57888899999999999999999999998874 368888887663 799999988 77899999999999999
Q ss_pred cccChHHHHHHH---HhcCCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 78 AVANIPELSRLA---HDKGVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 78 ~~~~~~~i~~l~---~~~~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
.+.+.+++.+++ ++++ ++|+||+|..+... .. ..+..++++|+||.||++|+|+ ||+++++++++.
T Consensus 166 ~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi-G~~i~~~~~~~~ 243 (366)
T PRK01533 166 TYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRV-GYAVGHEELIEK 243 (366)
T ss_pred CCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHH-hHHhCCHHHHHH
Confidence 998866555554 4544 77889999655321 11 1257899999999999999997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+...... .+.+.+.+.++..++....+.....+...++++++.+.++..+.++. |. .
T Consensus 244 l~~~~~~---~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~-~~-------------------~ 300 (366)
T PRK01533 244 LNVVRLP---FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENEIPFY-QS-------------------Q 300 (366)
T ss_pred HHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccC-CC-------------------c
Confidence 9876541 33444555555555554344445555667788888888888776544 32 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++|+.+++ ...+.+++.. .|+ . . .+ . ++++|+|+|..++.+.+
T Consensus 301 ~nf~~~~~~~---~~~~~~~l~~---~GI-~--V--------r~-----------------~-~~~iRis~~~~~~~~~l 345 (366)
T PRK01533 301 TNFIFLPVEN---GGEIYEACAH---AGF-I--I--------RP-----------------F-PNGVRITVGTREQNEGV 345 (366)
T ss_pred CcEEEEeCCC---HHHHHHHHHH---CCc-E--E--------cc-----------------C-CCceEEeCCCHHHHHHH
Confidence 7799999863 3456666663 333 1 1 11 0 36799999932344445
Q ss_pred HHHHHHHHHhh
Q 020548 306 WSQFEKALSRM 316 (324)
Q Consensus 306 ~~~l~~~l~~~ 316 (324)
++.|++.++..
T Consensus 346 ~~al~~~~~~~ 356 (366)
T PRK01533 346 ISVLQQHFENK 356 (366)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=215.45 Aligned_cols=249 Identities=10% Similarity=0.130 Sum_probs=167.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
++|..++. ++++| .|++.+|+|+.+...++ ..|.++..++.++.+...+.++..++++|++++||||||.+.+
T Consensus 68 ~~l~~~~~-~~~~~-~vv~~~P~y~~y~~~~~-----~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s 140 (332)
T PRK06425 68 HFIYRLLS-YINVG-NIIIVEPNFNEYKGYAF-----THGIRISALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNLIS 140 (332)
T ss_pred HHHHHHHH-HhCCC-cEEEeCCChHHHHHHHH-----HcCCeEEEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccC
Confidence 46777776 46776 46677999999999884 3788888887642111123332358899999999999999986
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLSP----A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+++|+++|+++|+++|+||+|..+..+. . ..+..++++||||.|+++|+|+ ||+++++++++.+....
T Consensus 141 ~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi-Gy~v~~~~li~~l~~~~ 219 (332)
T PRK06425 141 RDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRI-GYIATDDYNMKISRKIT 219 (332)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhh-eeeecCHHHHHHHHHcC
Confidence 5677778899999999999997765321 1 1256899999999999899997 99999999999888754
Q ss_pred hhhhhccCCCCCHHHHHHHhc-Cccc-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 151 QGALMLLGPTMNPKVAFELSE-RIPH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
. .+ ..+......+.. .... ++...+.+.++++.+.+.|++.+..+..|. .|++
T Consensus 220 ~----~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~-------------------~g~f 274 (332)
T PRK06425 220 E----PW--SVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAMGFRAAGDP-------------------SANF 274 (332)
T ss_pred C----CC--ccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC-------------------CceE
Confidence 4 11 222222222211 1122 234566678999999999999876544333 4778
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+|+.+++ ..++.+.+.. .|+ .+.|+..+. +..++++|+|+| .. +..+.
T Consensus 275 ~~~~~~~---~~~~~~~l~~---~gi-----------~v~~~~~f~-----------~~~~~~iRis~~-~~---~~~~~ 322 (332)
T PRK06425 275 ITFMIPD---AHDFYSYLLK---NGI-----------LVRLLDDYE-----------CLGEQYIRIAIR-RR---SFNIK 322 (332)
T ss_pred EEEEcCC---HHHHHHHHHH---CCe-----------EEEECCCCC-----------CCCCCEEEEEeC-CH---HHHHH
Confidence 9999862 4556666653 232 122322210 112479999999 32 33456
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
|.++|+.
T Consensus 323 l~~al~~ 329 (332)
T PRK06425 323 LVNALRN 329 (332)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=216.72 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=163.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+.+...++ ..|.++..++. .|++++++.+ ++++++|++++|+
T Consensus 96 ~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~ 169 (387)
T PRK07777 96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIA-----MAGAHRVPVPLVPDGRGFALDLDALRAAV-TPRTRALIVNSPH 169 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HCCCEEEEeecCCccCCCcCCHHHHHHhc-CcccEEEEEcCCC
Confidence 57888888889999999999999999887774 25666555543 3789999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC-----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
||||.+.+ +++|+++|+++++++|+||+|.++.+. +.. .+.++++.|+||.||.+|.|+ ||+++++
T Consensus 170 NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~ 248 (387)
T PRK07777 170 NPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKI-GWACGPA 248 (387)
T ss_pred CCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCcee-EEEecCH
Confidence 99999975 778899999999999999999655421 111 247899999999999899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++++.+..... ......+.+.+..+..++.. ..++....+.+.++++.+.+.|++.+.++..|.
T Consensus 249 ~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------- 313 (387)
T PRK07777 249 PLIAAVRAAKQ-YLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSA-------------- 313 (387)
T ss_pred HHHHHHHHHHh-hcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCC--------------
Confidence 99988876654 11233444555444444433 233455566779999999999999876554333
Q ss_pred ccCCCcceEEEEEeCC--HHHHHHHHHHhh
Q 020548 220 NKEYGFGGLLCLDMET--EEKANRLMNYLQ 247 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~--~~~~~~~~~~l~ 247 (324)
+|.++|+.++. ..+...|.+.+.
T Consensus 314 -----g~~~~~~~~~~~~~~~~~~~~~~l~ 338 (387)
T PRK07777 314 -----GTYFLCADPRPLGYDDGTEFCRALP 338 (387)
T ss_pred -----cceEEEecccccCCCCHHHHHHHHH
Confidence 56778888752 224567777764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=221.13 Aligned_cols=207 Identities=16% Similarity=0.158 Sum_probs=151.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++++++|||+|++++|+|+.+...+. ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 142 ~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~l~~~~~~~~d~~~l~~~~-~~~~~~v~i~nP~N 215 (462)
T PLN02187 142 QGIEIVFESLARPNANILLPRPGFPHYDARAA-----YSGLEVRKFDLLPEKEWEIDLEGIEAIA-DENTVAMVVINPNN 215 (462)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEeCccccCCccCHHHHHHhc-CCCcEEEEEeCCCC
Confidence 68899999999999999999999999887663 26777777654 1789999988 78899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c---c-CC---CCcEEEeCCccccccCCCeeEEEEEcC-hh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P---A-RL---GADVVVHSISKFISGGADIIAGAVCGP-AN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~---~-~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.+. + . .+ ...++++|+||.|+.+|+|+ ||++++ ++
T Consensus 216 PTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRi-G~~v~~~p~ 294 (462)
T PLN02187 216 PCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKI-GWIALNDPE 294 (462)
T ss_pred CCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCcccee-EEEEecCch
Confidence 9999986 778888999999999999999775432 1 1 11 24799999999999999997 999873 32
Q ss_pred -H---HHHHHHhhhhhhhc-cCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCce--eCCCCCCCchh
Q 020548 142 -L---VNSMMDLHQGALML-LGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV--LYPGLEDHPHH 212 (324)
Q Consensus 142 -~---~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~p~~~~~~~~ 212 (324)
+ .+.+.......... +.+.+.+.++..++.. ..++....+.+.++++.+.+.|++.+... ..|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~------- 367 (462)
T PLN02187 295 GVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPE------- 367 (462)
T ss_pred hHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCC-------
Confidence 2 34554444311111 1134445454445432 23455666778999999999999875421 2243
Q ss_pred HHHHHHhccCCCcceEEEEEeC
Q 020548 213 ELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 368 ------------gg~fl~~~l~ 377 (462)
T PLN02187 368 ------------SCTYLLTKLE 377 (462)
T ss_pred ------------EeEEEEeecC
Confidence 5788888775
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=220.08 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=149.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh-----cCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV-----QGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~-----~~~~~~v~~ 69 (324)
+|+..+++++++|||.|++++|+|+.+...+.. ..|.++..++.+ |+++++++++ ..++|+|++
T Consensus 130 ~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~----~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l 205 (496)
T PLN02376 130 GANETIMFCLADPGDVFLIPSPYYAAFDRDLRW----RTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLIL 205 (496)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCccchHHHHHh----hCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 578999999999999999999999999876631 157888777652 6788876542 247899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC-----------CCcEEEeCCccccccCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL-----------GADVVVHSISKFISGGA 129 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~-----------~~d~~~~S~sK~~~~~g 129 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|..+.++. ... +..+++.|+||.||.||
T Consensus 206 ~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG 285 (496)
T PLN02376 206 TNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG 285 (496)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc
Confidence 999999999986 5678889999999999999996653211 001 12356899999999999
Q ss_pred CeeEEEEEcC-hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH----HHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 130 DIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG----LRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 130 ~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
.|+ ||++++ +.+.+.++..... ...+++.+.++..++....+++ ...+++.++++.+.+.|++.+..+..|
T Consensus 286 lRv-G~li~~~~~l~~~~~~~~~~---~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~ 361 (496)
T PLN02376 286 FRV-GIVYSFNDSVVSCARKMSSF---GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTS 361 (496)
T ss_pred ceE-EEEEECCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 997 999985 4555555444331 2234455555555555433323 335567888899999999887665434
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
. +|.++|++++
T Consensus 362 ~-------------------aG~flwi~l~ 372 (496)
T PLN02376 362 N-------------------AGLFAWMDLR 372 (496)
T ss_pred C-------------------ceEEEEEEch
Confidence 3 6899999996
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=215.42 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=161.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc--CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ--GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~--~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|++++|+|.++...++ ..|.++..++.+ |++++++++.. ++++++++++|+
T Consensus 102 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~ 176 (391)
T PRK07309 102 EALSASLTAILEPGDKVLLPAPAYPGYEPIVN-----LVGAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPA 176 (391)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCC
Confidence 57888888899999999999999999988774 367777777542 68999988832 368999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-c--CCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-A--RLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+.++ + . ..+..++++|+||.|+.+|.|+ ||+++++++
T Consensus 177 NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRv-G~~v~~~~~ 255 (391)
T PRK07309 177 NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRI-GLIFAPAEF 255 (391)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCcccee-EEEEeCHHH
Confidence 99999975 788899999999999999999766431 1 1 1246699999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+..... ....+.+.+.+.++..++.... +.....+++.++++.+.+.|++.+..+..|.
T Consensus 256 ~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~---------------- 318 (391)
T PRK07309 256 TAQLIKSHQ-YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDLGFKIIKPD---------------- 318 (391)
T ss_pred HHHHHHHHh-hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC----------------
Confidence 998886644 2123334444555544554322 2334445678889999999998876655444
Q ss_pred CCCcceEEEEEeCCH--HHHHHHHHH
Q 020548 222 EYGFGGLLCLDMETE--EKANRLMNY 245 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~--~~~~~~~~~ 245 (324)
+|.++|++++.. .+...+.+.
T Consensus 319 ---gg~~~~~~l~~~~~~~~~~~~~~ 341 (391)
T PRK07309 319 ---GAFYIFAKIPAGYNQDSFKFLQD 341 (391)
T ss_pred ---eeEEEEEECCCCCCCCHHHHHHH
Confidence 566778888632 123445544
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=215.86 Aligned_cols=217 Identities=20% Similarity=0.241 Sum_probs=161.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...+. ..|.++..++.+ |++++++.+ ++++++|++++|+|
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~N 174 (388)
T PRK07337 101 AALLLACLALVERGDEVLMPDPSYPCNRHFVA-----AAEGRPVLVPSGPAERFQLTAADVEAAW-GERTRGVLLASPSN 174 (388)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEeecCCccCCcCCHHHHHhhc-CccceEEEEECCCC
Confidence 57888888899999999999999999987774 256666666542 689999988 78899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++++++|+||+|..+.+.. ... +..++++|+||.++++|.|+ ||+++++++++.
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~Ri-G~~~~~~~l~~~ 253 (388)
T PRK07337 175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRL-GWLVVPEALVGT 253 (388)
T ss_pred CCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhhe-eeeecCHHHHHH
Confidence 9999975 6788899999999999999996654321 122 23477899999999999997 999999999988
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+...... ...+.+.+.+.++..++.. ...+.+..+.+.++++.+.+.|++.+..+ ..|.
T Consensus 254 l~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~----------------- 315 (388)
T PRK07337 254 FEKLAQN-LFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPD----------------- 315 (388)
T ss_pred HHHHHHH-hccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-----------------
Confidence 8776541 1123344455444444432 23344555667889999999999976543 2344
Q ss_pred CCcceEEEEEeCCH-----HHHHHHHHH
Q 020548 223 YGFGGLLCLDMETE-----EKANRLMNY 245 (324)
Q Consensus 223 ~~~g~~~~~~l~~~-----~~~~~~~~~ 245 (324)
+|.++|++++.. .+...|.+.
T Consensus 316 --~g~f~~~~~~~~~~~~~~~~~~~~~~ 341 (388)
T PRK07337 316 --GAFYVYADCRGVAHPAAGDSAALTQA 341 (388)
T ss_pred --eeEEEEEecccccCCCCCCHHHHHHH
Confidence 688999998631 234556555
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=217.63 Aligned_cols=216 Identities=19% Similarity=0.206 Sum_probs=160.0
Q ss_pred CchHHHHHHHccCCCCE--EEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEec
Q 020548 1 MSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~--vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++|+..+++++++|||+ |++++|+|+.+...++ ..|.++..++.+ |++++++++ .++++++++++
T Consensus 100 ~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~ 173 (393)
T TIGR03538 100 REALFAFAQAVINPGQAPLVVMPNPFYQIYEGAAL-----LAGAEPYFLNCTAENGFLPDFDAVPESV-WRRCQLLFVCS 173 (393)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHH-----hcCCeEEEeeccccCCCCCCHHHHHHHH-hhcceEEEEeC
Confidence 36888899999999986 9999999999987763 367777777642 688898888 66899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----cc------------CCCCcEEEeCCccccccCCCee
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----PA------------RLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~~------------~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
||||||.+.+ +++|+++|+++|++||+||+|..+..+ +. ..+..++++|+||.++++|+|+
T Consensus 174 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRv 253 (393)
T TIGR03538 174 PGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRS 253 (393)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccce
Confidence 9999999986 678888999999999999999655422 10 1235699999999999999997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
||+++++++++.+..... ....+.+.+.+..+...+.....+....+.++++++.+.+.|++. ..+..|.
T Consensus 254 -G~~i~~~~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~------- 323 (393)
T TIGR03538 254 -GFVAGDAEILKAFLRYRT-YHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV-LDLELPD------- 323 (393)
T ss_pred -EEEecCHHHHHHHHHHHH-hhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCCC-------
Confidence 999999999988877654 111223334444433333322335555667788899999999875 3333344
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|++++ .....+.+.+
T Consensus 324 ------------gg~f~~~~~~--~~~~~~~~~l 343 (393)
T TIGR03538 324 ------------AGFYLWPKVP--GDDEAFARAL 343 (393)
T ss_pred ------------eeEEEEEECC--CCHHHHHHHH
Confidence 6889999997 1234566554
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=215.92 Aligned_cols=219 Identities=16% Similarity=0.115 Sum_probs=162.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc--CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ--GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~--~~~~~v~~~~~~np 75 (324)
+|+..++..+++|||+|++++|+|+.+...++ ..|.++..++.+ +.++++++++. ++++++++++|+||
T Consensus 102 ~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NP 176 (395)
T PRK08175 102 EGLAHLMLATLDHGDTVLVPNPSYPIHIYGAV-----IAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNP 176 (395)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 57788888889999999999999999877763 267777777653 47888887732 47899999999999
Q ss_pred cccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+. ++|+++|+++|+++|+||+|..+.++. .. .+..++++|+||.||.||.|+ ||+++++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRi-G~~~~~~~l 255 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRI-GFMVGNPEL 255 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhh-eeeeCCHHH
Confidence 9999876 788999999999999999996554221 11 134578899999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... ...+.+++.+.++..++... .++....+++.++++.+.+.|++.+..+..|.
T Consensus 256 ~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~---------------- 318 (395)
T PRK08175 256 VSALARIKSY-HDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPK---------------- 318 (395)
T ss_pred HHHHHHHHhh-cccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC----------------
Confidence 9988876541 11223344444444444332 23445566678899999999999876544444
Q ss_pred CCCcceEEEEEeCCHH---HHHHHHHHh
Q 020548 222 EYGFGGLLCLDMETEE---KANRLMNYL 246 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~---~~~~~~~~l 246 (324)
+|.++|++++... ...++..++
T Consensus 319 ---~g~~i~i~l~~~~~~~~~~~~~~~l 343 (395)
T PRK08175 319 ---ASMYVWAKIPEPYAAMGSLEFAKKL 343 (395)
T ss_pred ---EEEEEEEECCcccCCCCHHHHHHHH
Confidence 6889999997422 245566554
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=217.70 Aligned_cols=218 Identities=16% Similarity=0.205 Sum_probs=162.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++. .|++++++.+ +++++++++++|+|
T Consensus 104 ~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~i-~~~~~~v~i~~p~N 177 (391)
T PRK08361 104 EATYLAFESLLEEGDEVIIPDPAFVCYVEDAK-----IAEAKPIRIPLREENEFQPDPDELLELI-TKRTRMIVINYPNN 177 (391)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----HcCCEEEEEecCCccCCCCCHHHHHHhc-ccccEEEEEeCCCC
Confidence 57888888899999999999999999887773 26777777654 3789999998 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A--RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
|||.+.+ +++|+++|+++++++|+||+|..+..+. . ..+.+++++|+||.||.+|.|+ ||++++++++
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRi-G~~~~~~~~~ 256 (391)
T PRK08361 178 PTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRL-GFVIAPEQVI 256 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhh-hhhccCHHHH
Confidence 9999998 7889999999999999999996653211 1 1257899999999999899997 9999999998
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHh
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+.+..... ......+.+.+..+..++.... .+....+++.++++.+.+.|++. +..+..|.
T Consensus 257 ~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~-------------- 321 (391)
T PRK08361 257 KDMIKLHA-YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPK-------------- 321 (391)
T ss_pred HHHHHHHh-hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC--------------
Confidence 88876544 1112233334444444444322 24556666788899999999987 33444343
Q ss_pred ccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 220 NKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|++++. ..+..++.+.+
T Consensus 322 -----g~~~~~~~l~~~~~~~~~l~~~l 344 (391)
T PRK08361 322 -----GAFYVFANIDETGMSSEDFAEWL 344 (391)
T ss_pred -----EEEEEEEECCCCCCCHHHHHHHH
Confidence 56678888863 22345566654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=215.66 Aligned_cols=218 Identities=12% Similarity=0.105 Sum_probs=160.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
++|..++.+++++||.|++++|+|+.+...+. ..|.++..++.+ |++++++.+.+++++++++++|+||||
T Consensus 95 ~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG 169 (369)
T PRK08153 95 GLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVA-----GFGGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNPMG 169 (369)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcchHHHHHHH-----HcCCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCC
Confidence 56778888889999999999999999887663 256676666542 788887776457899999999999999
Q ss_pred cccChHHHHHHHHhc--CCEEEEcCCCCcCCCCc----c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 78 AVANIPELSRLAHDK--GVTVVVDNTFSPLVLSP----A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~~----~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
.+.+.+++.++++.. ++++|+||+|..+.... . ..+..++++||||.+|++|+|+ ||+++++++++.+...
T Consensus 170 ~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~v~~~~~~~~l~~~ 248 (369)
T PRK08153 170 SWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARV-GYAIGAPGTIKAFDKV 248 (369)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchhe-eeeecCHHHHHHHHHh
Confidence 999887777776543 89999999996654321 1 1245699999999999899997 9999999999988876
Q ss_pred hhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 150 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
... .+.+.+.+..+..++....++....+.+.++++.+.+.|++.+..+. |. .++++
T Consensus 249 ~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~-------------------~~~f~ 305 (369)
T PRK08153 249 RNH---FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGLTPL-PS-------------------ATNFV 305 (369)
T ss_pred hcC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CC-------------------cCcEE
Confidence 541 33344444444445543334555556678889999999988775432 44 57788
Q ss_pred EEEeC-CHHHHHHHHHHhhc
Q 020548 230 CLDME-TEEKANRLMNYLQN 248 (324)
Q Consensus 230 ~~~l~-~~~~~~~~~~~l~~ 248 (324)
++.++ +......+.+.+..
T Consensus 306 ~~~~~~~~~~a~~l~~~l~~ 325 (369)
T PRK08153 306 AIDCGRDGAFARAVLDGLIA 325 (369)
T ss_pred EEECCCCcccHHHHHHHHHH
Confidence 88875 33446677777664
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=217.20 Aligned_cols=218 Identities=20% Similarity=0.227 Sum_probs=158.2
Q ss_pred chHHHHHHHccCCCC-EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc---CCceEEEEec
Q 020548 2 SAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ---GRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd-~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~---~~~~~v~~~~ 71 (324)
+||..++.+++.+|| +|++++|+|+.+...++ ..|.++..++.+ |++++++++.. +++++|++++
T Consensus 102 ~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~ 176 (374)
T PRK02610 102 ELIRSLLIATCLGGEGSILVAEPTFSMYGILAQ-----TLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH 176 (374)
T ss_pred HHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeC
Confidence 567777777777886 89999999999998884 367787777642 78999988833 5899999999
Q ss_pred CCCCcccccChHHHHHHHHh-cCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 72 ISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~-~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||||||.+.+.+++.++++- +++++|+||+|..|...+ ......++++|+||.||++|+|+ ||+++++++++.
T Consensus 177 P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRi-G~~v~~~~l~~~ 255 (374)
T PRK02610 177 PNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRV-GYAIGHPELIAV 255 (374)
T ss_pred CCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccce-eeeecCHHHHHH
Confidence 99999999987766665432 489999999997664221 11235688999999999999997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+...... ...+.+.+.++..++...+.....+++..++++.+.+.|++++. .+ .|.
T Consensus 256 l~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~------------------- 312 (374)
T PRK02610 256 LEKVRLP---YNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRV-WPS------------------- 312 (374)
T ss_pred HHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEe-CCC-------------------
Confidence 8876541 23344555555545544334444555555567888888887633 32 344
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|+++|++++...+...+++.+..
T Consensus 313 ~g~f~~~~l~~~~~~~~~~~~l~~ 336 (374)
T PRK02610 313 AANFLYLRLSQDAALAALHQALKA 336 (374)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 578999999743345667777653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=216.39 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=182.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+++..++.+++++||+|++++|+|..+...+. ..|.++..++.+ |++++++.+ ++++++|++++|+||||
T Consensus 95 ~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~nptG 168 (367)
T PRK02731 95 EILELLARAYLGPGDEVIYSEHGFAVYPIAAQ-----AVGAKPVEVPAKDYGHDLDAMLAAV-TPRTRLVFIANPNNPTG 168 (367)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCHHHHHHHHH-----HcCCeEEEecccCCCCCHHHHHHHh-CCCCcEEEEeCCCCCCC
Confidence 46777888889999999999999988876653 268888777653 789999999 77899999999999999
Q ss_pred cccChHHHHHHHHhc--CCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVANIPELSRLAHDK--GVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
.+.+.+++.++++.+ |+++|+||+|..+... +. .....++++|+||.||.+|.|+ ||+++++++.+.+
T Consensus 169 ~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~~~~~~~~l 247 (367)
T PRK02731 169 TYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRV-GYGIAPPEIIDAL 247 (367)
T ss_pred cCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccce-eeeeCCHHHHHHH
Confidence 999999999998874 8999999998544321 11 1146789999999999899997 9999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...... +..+.+.+..+..++....+++...+.+.++++.+.+.|++.+..+. |. .|
T Consensus 248 ~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~g 304 (367)
T PRK02731 248 NRVRQP---FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGLEYI-PS-------------------VG 304 (367)
T ss_pred HHccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CC-------------------Cc
Confidence 876541 33344444444444443333455555668888999999998876543 33 47
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
+++|+.+++..+..++.+.+.. .|+ .+ .+... .+ .++++|+|++ . .+.+
T Consensus 305 ~~~~i~~~~~~~~~~~~~~L~~---~gI-~v----------~~~~~------------~~-~~~~iRis~~-~---~~e~ 353 (367)
T PRK02731 305 NFILVDFDDGKDAAEAYQALLK---RGV-IV----------RPVAG------------YG-LPNALRITIG-T---EEEN 353 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHH---CCE-EE----------EeCCC------------CC-CCCeEEEecC-C---HHHH
Confidence 8999999644456677777663 343 11 11111 11 1478999999 3 3445
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+.+
T Consensus 354 ~~l~~aL~~~ 363 (367)
T PRK02731 354 RRFLAALKEF 363 (367)
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=216.75 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=150.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+.+...+. ..|.++..++. .|++++++++ +++++++++++|||
T Consensus 108 ~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~~~~~nP~N 181 (409)
T PLN00143 108 HAAEIIIKVLARPEANILLPRPGFPDVETYAI-----FHHLEIRHFDLLPEKGWEVDLDAVEAIA-DENTIAMVIINPGN 181 (409)
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHH-----HcCCEEEEEeccCCCCCcCCHHHHHHhc-ccCCEEEEEECCCC
Confidence 57889999999999999999999999987773 36777777653 1789999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC-C---CCcEEEeCCccccccCCCeeEEEEEc--Ch
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-L---GADVVVHSISKFISGGADIIAGAVCG--PA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~-~---~~d~~~~S~sK~~~~~g~r~~G~i~~--~~ 140 (324)
|||.+.+ +++|+++|+++++++|+||+|..+.++ +.. . ...++++|+||.|+++|+|+ ||+++ ++
T Consensus 182 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRv-G~~v~~~p~ 260 (409)
T PLN00143 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGL-GWLVTCDPS 260 (409)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccce-EEEEeeCch
Confidence 9999986 668888899999999999999766432 111 1 35699999999999999997 99987 33
Q ss_pred hHH------HHHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCce--eCCCCCCCc
Q 020548 141 NLV------NSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV--LYPGLEDHP 210 (324)
Q Consensus 141 ~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~p~~~~~~ 210 (324)
.+. +.+..... . ....+.+.+.++..++.. ..+++..++++.++++.+.+.|++.+... ..|.
T Consensus 261 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~----- 333 (409)
T PLN00143 261 GLLQICEIADSIKKALN-P-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAE----- 333 (409)
T ss_pred hhhhhHHHHHHHHHHHh-c-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-----
Confidence 333 22332222 0 122344555555445542 23466677778888888999998865421 1232
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 334 --------------gg~f~w~~l~ 343 (409)
T PLN00143 334 --------------GAFFALVKLN 343 (409)
T ss_pred --------------eeEEEEEecc
Confidence 6889999986
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=212.76 Aligned_cols=255 Identities=20% Similarity=0.256 Sum_probs=178.3
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++|..++++++.+| |+|++++|+|..+...++ ..|.++..++.. |++++++.+.++++++|++++|
T Consensus 87 ~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p 161 (364)
T PRK04781 87 EAIDLLVRALCVPGRDAVLVTPPVFGMYAVCAR-----LQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSP 161 (364)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCC
Confidence 57888888889999 799999999998877663 267777777641 5677765543678999999999
Q ss_pred CCCcccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 73 SNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+||||.+.+.+++.++++. +++++|+||+|..|...+ ...++.++++||||.||.+|+|+ ||+++++++++
T Consensus 162 ~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRv-Gy~v~~~~l~~ 240 (364)
T PRK04781 162 SNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARI-GSLIANAELIA 240 (364)
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhccccccee-eeeeCCHHHHH
Confidence 9999999998877777764 478999999997665322 12257899999999999899997 99999999999
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhcc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.+...... ...+++.+..+..++... ......++++.++++.+.+.|++.+ .....|.
T Consensus 241 ~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~---------------- 301 (364)
T PRK04781 241 VLRRCQAP---YPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPS---------------- 301 (364)
T ss_pred HHHhccCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC----------------
Confidence 99877652 233334444444344332 2344556667889999999999874 3323455
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
.|+++|+++++ ...+.+.+.. .|+ . +.++..+ .+. ++++|+|+| .
T Consensus 302 ---~g~f~~~~~~~---~~~~~~~l~~---~gI-~----------v~~~~~~-----------~~~-~~~~Ris~~-~-- 346 (364)
T PRK04781 302 ---QGNFLLVRFDD---AEAAFQALLA---AGV-V----------VRDQRAA-----------PRL-SDALRITLG-T-- 346 (364)
T ss_pred ---CCcEEEEEcCC---HHHHHHHHHH---CCe-E----------EeeCCCC-----------CCC-CCeEEEeCC-C--
Confidence 58899999974 3345555553 332 1 1222111 012 478999999 4
Q ss_pred HHHHHHHHHHHHHhhh
Q 020548 302 LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~~ 317 (324)
.+..+.|.++|+.+.
T Consensus 347 -~~~~~~l~~al~~~~ 361 (364)
T PRK04781 347 -PEQNDRVLAALQRTQ 361 (364)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 333456666666553
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=214.85 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=153.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|+..++.++++|||.|+++.|.|+++...+.. + .|+++++++.+ |++++++++.. .++|++++
T Consensus 131 ~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~---~-~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll 206 (447)
T PLN02607 131 AANELLTFILADPGDALLVPTPYYPGFDRDLRW---R-TGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLI 206 (447)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh---c-CCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEE
Confidence 578888888999999999999999999876631 2 57777776542 78899888832 47899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c----c---------C-CCCcEEEeCCccccccCCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P----A---------R-LGADVVVHSISKFISGGAD 130 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~----~---------~-~~~d~~~~S~sK~~~~~g~ 130 (324)
++||||||.+.+ +++|.++|+++|+.+|+||+|..+.++ + . + .+..+++.|+||.||.+|.
T Consensus 207 ~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~Gl 286 (447)
T PLN02607 207 TNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGF 286 (447)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcc
Confidence 999999999986 678889999999999999999653221 1 0 1 1356899999999999999
Q ss_pred eeEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 131 IIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 131 r~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
|+ ||+++ ++++.+.++..... ...+++.+..+..++..... +....+++.++++.+.+.|++.+..+..|.
T Consensus 287 Rv-G~ivs~n~~l~~~~~~~~~~---~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ 362 (447)
T PLN02607 287 RV-GTIYSYNDKVVTTARRMSSF---TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGN 362 (447)
T ss_pred eE-EEEEEcCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 97 99987 66777777655431 12344555555555554333 334456678889999999999876544333
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 363 -------------------ag~fvw~~L~ 372 (447)
T PLN02607 363 -------------------AGLFCWMNLS 372 (447)
T ss_pred -------------------eeEEEEEEch
Confidence 7889999986
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=215.68 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=151.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++++|||+|++++|+|+.+..... ..|.++..++. .|++++++.+ +++++++++++|+|
T Consensus 128 ~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~P~N 201 (430)
T PLN00145 128 QAIEIIMSVLAQPGANILLPRPGYPLYEARAV-----FSGLEVRHFDLLPERGWEVDLEGVEALA-DENTVAMVIINPNN 201 (430)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeeCCcccCCcCCHHHHHHHh-CcCceEEEEeCCCC
Confidence 68899999999999999999999999876652 35777777653 2889999988 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEEc--Ch
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVCG--PA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~--~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++ +. .....++++|+||.|++||+|+ ||++. ++
T Consensus 202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~Rl-G~iv~~~~~ 280 (430)
T PLN00145 202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRL-GWIATCDPN 280 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeE-EEEEEecch
Confidence 9999987 778888999999999999999665432 11 1136799999999999999998 99986 44
Q ss_pred hHHHH------HHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-Cce-eCCCCCCCc
Q 020548 141 NLVNS------MMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKV-LYPGLEDHP 210 (324)
Q Consensus 141 ~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~p~~~~~~ 210 (324)
.+++. +..... .....+++.|.++..++.. ...++..+++++++++.+.+.|++.+ ..+ ..|.
T Consensus 281 ~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~----- 353 (430)
T PLN00145 281 GILKETKVVDSIRNYLN--ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPE----- 353 (430)
T ss_pred hhhhhhHHHHHHHHHhc--ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCC-----
Confidence 44432 222221 0011233444444444443 13356667778899999999998863 333 2354
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 354 --------------ga~y~~v~l~ 363 (430)
T PLN00145 354 --------------GSMFVMVKLD 363 (430)
T ss_pred --------------eeeEEEeccC
Confidence 6888899886
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=211.53 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=160.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+||..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++...++++|++++|+|||
T Consensus 87 ~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPt 161 (351)
T PRK14807 87 EIIHLIMLAFINKGDVVIYPHPSFAMYSVYSK-----IAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPT 161 (351)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCC
Confidence 57888888899999999999999998877663 267777776543 78999999843589999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.+++++++.++|+||+|..+.... . ..+..++++|+||.|+.+|+|+ ||+++++++++.+.....
T Consensus 162 G~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRi-G~~v~~~~~~~~~~~~~~ 240 (351)
T PRK14807 162 GSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRV-GYAVANENILKYLNLVKS 240 (351)
T ss_pred CCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhce-eeeecCHHHHHHHHHccC
Confidence 999999999999999888999999996553211 1 2357899999999999899997 999999999998876654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
. ...+.+.+..+..++.. ..+++..+.+.++++.+.+.|++. +..+ .|. .|+++|
T Consensus 241 ~---~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~~g~~~-~~~-------------------~~~~~~ 296 (351)
T PRK14807 241 P---YNINSLSQVIALKVLRT-GVLKERVNYILNERERLIKELSKIPGIKV-YPS-------------------KTNFIL 296 (351)
T ss_pred C---CCcCHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CcC-------------------CccEEE
Confidence 1 22334444444444432 345566667788888899999875 3343 233 467889
Q ss_pred EEeCCHHHHHHHHHHhh
Q 020548 231 LDMETEEKANRLMNYLQ 247 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~ 247 (324)
+.+++ ...+.+.+.
T Consensus 297 i~~~~---~~~~~~~l~ 310 (351)
T PRK14807 297 VKFKD---ADYVYQGLL 310 (351)
T ss_pred EEcCC---HHHHHHHHH
Confidence 99874 344555554
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=217.36 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=159.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ ++++++|++++|||
T Consensus 115 ~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~p~N 188 (412)
T PTZ00433 115 HAILMALTALCDEGDNILVPAPGFPHYETVCK-----AYGIEMRFYNCRPEKDWEADLDEIRRLV-DDRTKALIMTNPSN 188 (412)
T ss_pred HHHHHHHHHhcCCCCEEEEccCCcccHHHHHH-----HcCCEEEEEecCccccCcCCHHHHHHHh-ccCceEEEEeCCCC
Confidence 57888999999999999999999999988874 367777776542 689999888 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEc--C-
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCG--P- 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~--~- 139 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ... ...++++|+||.|+++|.|+ ||++. +
T Consensus 189 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRl-G~~i~~~p~ 267 (412)
T PTZ00433 189 PCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRL-GWLLLVDPH 267 (412)
T ss_pred CCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeE-EEEEEeCCc
Confidence 9999875 6778999999999999999997664321 111 23588999999999999997 99986 2
Q ss_pred ---hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-c-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhH
Q 020548 140 ---ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-I-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~ 213 (324)
+++++.+...... ..+.+.+.+.++..++.. . .+++...+++.++++.+.+.|++. +..+..|.
T Consensus 268 ~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------- 337 (412)
T PTZ00433 268 GNGGDFLDGMKRLGML--VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPR-------- 337 (412)
T ss_pred ccHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC--------
Confidence 3566666554331 123344444444444433 1 335556667788999999999875 44444444
Q ss_pred HHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHhh
Q 020548 214 LLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ 247 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l~ 247 (324)
+|.++|+.++.. ....++++.+.
T Consensus 338 -----------gg~f~~~~l~~~~~~~~~~~~~~~~~ll 365 (412)
T PTZ00433 338 -----------GSMFLMSRLDLEKFRDIKSDVEFYEKLL 365 (412)
T ss_pred -----------eeEEEEEEechhhcCCCCCHHHHHHHHH
Confidence 678899998631 13456666654
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=213.80 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=161.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++.+ |++++++++ +.++++|++++|+|
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~P~N 174 (386)
T PRK07550 101 QAFWAAMVTLAGAGDEVILPLPWYFNHKMWLD-----MLGIRPVYLPCDEGPGLLPDPAAAEALI-TPRTRAIALVTPNN 174 (386)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEecCCCcCCCCCHHHHHHHh-cccCcEEEEeCCCC
Confidence 57888888899999999999999999987773 368888777753 688899999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---c---cC---C-CCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P---AR---L-GADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~---~~---~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... + .. . ...+++.|+||.++.+|.|+ ||++++++
T Consensus 175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~i~~~~~ 253 (386)
T PRK07550 175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRV-GAVVASPA 253 (386)
T ss_pred CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccce-EeeecCHH
Confidence 9999986 779999999999999999999655321 1 11 1 24688999999999899997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+..... ....+.+.+.+.++..++..... +....+.+.++++.+.+.|++.+ ..+ .|.
T Consensus 254 ~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-------------- 317 (386)
T PRK07550 254 RIAEIEKFMD-TVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLPGWEL-LAS-------------- 317 (386)
T ss_pred HHHHHHHHHh-hcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCC--------------
Confidence 9988887654 11223344445454444444222 33444567888899999998863 222 122
Q ss_pred ccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 220 NKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|+.++. ..+..++.+.+
T Consensus 318 -----g~~~~~~~~~~~~~~~~~l~~~l 340 (386)
T PRK07550 318 -----GAYFAYVRHPFPDRPSREVARRL 340 (386)
T ss_pred -----ceEEEEecCCCCCCCHHHHHHHH
Confidence 57788998864 34456677664
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=213.43 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=175.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ |++++++. .++++++++++|||||
T Consensus 106 ~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~~v~l~nP~NPT 178 (370)
T PRK09105 106 EPLNYAVLAFTSPTAGLVTADPTYEAGWRAAD-----AQGAPVAKVPLRADGAHDVKAMLAA--DPNAGLIYICNPNNPT 178 (370)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEecCCCCCCCCHHHHHhc--CCCCCEEEEeCCCCCC
Confidence 57888888999999999999999999988774 367787777553 67888765 3568999999999999
Q ss_pred ccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc--cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 77 LAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP--AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 77 G~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~--~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|.+.+.+++.++++. +++++|+||+|..+...+ .. ....++++|+||.||++|+|+ ||+++++++++.+..
T Consensus 179 G~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRi-G~~v~~~~~i~~l~~ 257 (370)
T PRK09105 179 GTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRL-GLAAARPDLLAKLAR 257 (370)
T ss_pred CcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccce-eeeecCHHHHHHHHh
Confidence 999998888877654 489999999995553222 11 245689999999999999997 999999999988876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
... ...+.+.+.++...+....+++...+++.++++.+.+.|++.+..+..| .|++
T Consensus 258 ~~~----~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--------------------~~~f 313 (370)
T PRK09105 258 FGH----NPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKGYKCTPS--------------------QANC 313 (370)
T ss_pred cCC----CCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC--------------------CCcE
Confidence 522 2233333334433444434455666778899999999999987654422 3556
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++. +..++.+.+.. .|+ . .|.. + +..++++|+|++ . .+..+.
T Consensus 314 ~~~~~~~--~~~~l~~~L~~---~gI-~--v~~~------~----------------~~~~~~~Ris~~-~---~~~~~~ 359 (370)
T PRK09105 314 FMVDVKR--PAKAVADAMAK---QGV-F--IGRS------W----------------PIWPNWVRVTVG-S---EEEMAA 359 (370)
T ss_pred EEEeCCC--CHHHHHHHHHH---CCc-E--EecC------C----------------CCCCCeEEEEcC-C---HHHHHH
Confidence 6777752 24456666653 232 1 1110 0 112478999999 4 234566
Q ss_pred HHHHHHhh
Q 020548 309 FEKALSRM 316 (324)
Q Consensus 309 l~~~l~~~ 316 (324)
+.++|+.+
T Consensus 360 l~~al~~~ 367 (370)
T PRK09105 360 FRSAFAKV 367 (370)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=220.45 Aligned_cols=195 Identities=17% Similarity=0.173 Sum_probs=140.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++. .|++++++++ ++++++|++++|||
T Consensus 219 eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~k~i~i~nP~N 292 (517)
T PRK13355 219 ELINLSMSALLDDGDEVLIPSPDYPLWTACVN-----LAGGTAVHYRCDEQSEWYPDIDDIRSKI-TSRTKAIVIINPNN 292 (517)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHH-----HCCCEEEEeecCcccCCCCCHHHHHHhc-CcCceEEEEECCCC
Confidence 57888899999999999999999999988773 36777766643 2789999998 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC--C-CcEEEeCCccccccCCCeeEEEEE--cCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL--G-ADVVVHSISKFISGGADIIAGAVC--GPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~--~-~d~~~~S~sK~~~~~g~r~~G~i~--~~~ 140 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++. ... + ..++++|+||.|+++|+|+ ||++ +++
T Consensus 293 PTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~Ri-G~~i~~~~~ 371 (517)
T PRK13355 293 PTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRI-GWMILSGNK 371 (517)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccce-EEEEeeCch
Confidence 9999987 7889999999999999999997665321 111 1 2455699999999999997 9998 445
Q ss_pred hH----HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHH---HHHHHHHHHHHHHHHHhC-CCceeCCC
Q 020548 141 NL----VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR---MKEHCHRALIFARRMKKL-GLKVLYPG 205 (324)
Q Consensus 141 ~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~L~~~-~~~~~~p~ 205 (324)
++ .+.+..... ...+.+.+.+.++..++......... .+++.++++.+.+.|++. +..+..|.
T Consensus 372 ~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~ 442 (517)
T PRK13355 372 RIAKDYIEGLNMLAN--MRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVKPK 442 (517)
T ss_pred hhHHHHHHHHHHHhc--CcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 44 333332221 11334445555555555433222222 334566788999999887 44554444
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=213.70 Aligned_cols=252 Identities=18% Similarity=0.232 Sum_probs=180.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++++++++||+|++++|+|..+...++ ..|.++..++.+ |++++++++...++++|++++|+|||
T Consensus 92 ~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPt 166 (356)
T PRK04870 92 ELIQLLALACAKPGATVLAPEPGFVMYRMSAK-----LAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPT 166 (356)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCHHHHHHHHH-----HcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCC
Confidence 56778888889999999999999999888773 378888887653 78999999844689999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.++++..+.++|+||+|..+.... ...+..+++.|+|| ++.+|.|+ ||+++++++++.+.....
T Consensus 167 G~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRi-G~~i~~~~~i~~~~~~~~ 244 (356)
T PRK04870 167 GNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRL-GYLAGHPAWIAELDKVRP 244 (356)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhh-hhhhCCHHHHHHHHHccC
Confidence 999998888888877688999999996664321 12256799999999 89999997 999999999998887654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
. ...+.+.+.++..++.....++...+++.++++.+.+.|++. +..+ .|. .|+++|
T Consensus 245 ~---~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-------------------~~~~~~ 301 (356)
T PRK04870 245 P---YNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTV-FPS-------------------AANFIL 301 (356)
T ss_pred C---CcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC-------------------CCeEEE
Confidence 1 223334444444444443445566677888999999999887 3333 343 467999
Q ss_pred EEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 231 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.+++ ...+.+.+.. .|+ .+ .++..+. +..++++|+|++ . .+..+.|.
T Consensus 302 ~~~~~---~~~~~~~l~~---~gI-~v----------~~~~~f~-----------~~~~~~iRis~~-~---~~~~~~l~ 349 (356)
T PRK04870 302 VRVPD---AAAVFDGLKT---RGV-LV----------KNLSGMH-----------PLLANCLRVTVG-T---PEENAQFL 349 (356)
T ss_pred EECCC---HHHHHHHHHH---CCE-EE----------EECCCCC-----------CCCCCeEEEeCC-C---HHHHHHHH
Confidence 99873 3445555553 333 11 2221110 112479999999 3 34456666
Q ss_pred HHHHh
Q 020548 311 KALSR 315 (324)
Q Consensus 311 ~~l~~ 315 (324)
++|++
T Consensus 350 ~al~~ 354 (356)
T PRK04870 350 AALKA 354 (356)
T ss_pred HHHHH
Confidence 66654
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=197.17 Aligned_cols=259 Identities=22% Similarity=0.241 Sum_probs=183.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+-||..+++++.+|||.|++..|.|+++....+ ..|-++...|.. |.++|++++.+++++++++|+|
T Consensus 93 Vpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~-----~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnP 167 (388)
T COG1168 93 VPGISLAIRALTKPGDGVVIQTPVYPPFYNAIK-----LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNP 167 (388)
T ss_pred hHhHHHHHHHhCcCCCeeEecCCCchHHHHHHh-----hcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCC
Confidence 357899999999999999999999999999884 366667666542 9999999997788999999999
Q ss_pred CCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCccC------C-----CCcEEEeCCccccccCCCeeEEEE-E
Q 020548 73 SNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPAR------L-----GADVVVHSISKFISGGADIIAGAV-C 137 (324)
Q Consensus 73 ~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~------~-----~~d~~~~S~sK~~~~~g~r~~G~i-~ 137 (324)
|||||.+. ++..|.++|.+||++||.||.++++...... . +..+.+.|.||+|..+|... +++ +
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~-a~~Ii 246 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKC-AYIII 246 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhh-eeEEe
Confidence 99999996 5778899999999999999999777543211 1 45689999999999999996 666 5
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHH-HHh-cCcccHHHHHHHHHHHHHHHHHHHHhC--CCceeCCCCCCCchhH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELS-ERIPHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~~~~~~~ 213 (324)
.++++..+..+... .....+++.....+. .+. .+-.++++..+-+..|++++.+.|+++ +.++..|.
T Consensus 247 ~n~~lr~~~~~~l~-~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~-------- 317 (388)
T COG1168 247 SNRELRAKFLKRLK-RNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQ-------- 317 (388)
T ss_pred cCHHHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCC--------
Confidence 56666555444333 111333332222222 232 344567767677799999999999997 44777776
Q ss_pred HHHHHhccCCCcceEEEEEeC----C-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC-
Q 020548 214 LLKSMANKEYGFGGLLCLDME----T-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI- 287 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~----~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (324)
+.++.|+++. + .+..+.+++..+. +++.| ..+ |.
T Consensus 318 -----------gTYL~WLD~r~l~l~d~~l~~~ll~~akV-------al~~G----------~~F------------G~~ 357 (388)
T COG1168 318 -----------GTYLAWLDCRELGLDDSELAEFLLEEAKV-------ALSPG----------STF------------GEE 357 (388)
T ss_pred -----------CceeeeeeccccCCChHHHHHHHHHhhcE-------eccCC----------Ccc------------CcC
Confidence 7889999987 2 2333444444442 33333 222 22
Q ss_pred CCCeEEEEeccCC--CHHHHHHHHHHHHHh
Q 020548 288 SAGLVRMSVGYLG--TLDQRWSQFEKALSR 315 (324)
Q Consensus 288 ~~~~iR~s~g~~~--~~~~~~~~l~~~l~~ 315 (324)
..+++|+.++ .. ..++.++++..+|++
T Consensus 358 g~gf~RlN~a-cpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 358 GSGFVRLNFA-CPRAILEEALERLKRALKK 386 (388)
T ss_pred CCceEEEecC-CCHHHHHHHHHHHHHHHhc
Confidence 2489999999 53 445555555555544
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=214.43 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=157.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|..+...++ ..|.++..++. .|++++++.+ +.+++++++++|+|
T Consensus 106 ~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~-----~~g~~v~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~N 179 (401)
T TIGR01264 106 HAIEMCIAALANAGQNILVPRPGFPLYETLAE-----SMGIEVKLYNLLPDKSWEIDLKQLESLI-DEKTAALIVNNPSN 179 (401)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCChhHHHHHH-----HcCCEEEEeecCCccCCCCCHHHHHHHh-ccCceEEEEcCCCC
Confidence 57888889999999999999999999987774 36777777654 2789999988 67889999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEcCh--
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCGPA-- 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~-- 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ..+ ...++++|+||.|+++|.|+ ||+++++
T Consensus 180 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~iv~~~~~ 258 (401)
T TIGR01264 180 PCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRL-GWIIIHDRR 258 (401)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceE-EEEEecCcc
Confidence 9999975 7788999999999999999997664321 111 23689999999999999997 9998763
Q ss_pred ----hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhH
Q 020548 141 ----NLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHE 213 (324)
Q Consensus 141 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~ 213 (324)
++++.+...... ....+.+.+.++..++.. ..++....+++.++++.+.+.|++++ ..+..|.
T Consensus 259 ~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------- 328 (401)
T TIGR01264 259 GILRDIRDGLVKLSQR--ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPS-------- 328 (401)
T ss_pred hhHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC--------
Confidence 344444433220 122344555555445533 23355666778889999999999873 3433444
Q ss_pred HHHHHhccCCCcceEEEEEeCC-----HHHHHHHHHHh
Q 020548 214 LLKSMANKEYGFGGLLCLDMET-----EEKANRLMNYL 246 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~-----~~~~~~~~~~l 246 (324)
+|.++|+.++. ......+.+.+
T Consensus 329 -----------~g~f~~~~~~~~~~~~~~~~~~~~~~l 355 (401)
T TIGR01264 329 -----------GAMYMMVGIEMEHFPEFKNDVEFTERL 355 (401)
T ss_pred -----------eeeEEEEEecccccCCCCCHHHHHHHH
Confidence 68899999752 11244555554
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=211.96 Aligned_cols=207 Identities=19% Similarity=0.232 Sum_probs=155.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~N 175 (393)
T PRK05764 102 QALYNAFMALLDPGDEVIIPAPYWVSYPEMVK-----LAGGVPVFVPTGEENGFKLTVEQLEAAI-TPKTKALILNSPSN 175 (393)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCcchHHHHH-----HcCCEEEEEecCcccCCcCCHHHHHHhh-CccceEEEEECCCC
Confidence 57888888889999999999999999887773 367887777653 579999998 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c------cCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P------ARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|+++++|++|+.+... + ...+.+++++|+||.++.+|.|+ ||+++++
T Consensus 176 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~i~~~~ 254 (393)
T PRK05764 176 PTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRL-GYAAGPK 254 (393)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcccee-EEEecCH
Confidence 9999975 778999999999999999999655321 1 11257899999999999899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+...... .....+.+.+..+...+.. ..++....+.+.++++.+.+.|+++ +..+..|.
T Consensus 255 ~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------------- 320 (393)
T PRK05764 255 ELIKAMSKLQSH-STSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPE------------- 320 (393)
T ss_pred HHHHHHHHHHhh-cccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-------------
Confidence 999988776541 1112233333333334432 2334455566788889999999987 55544333
Q ss_pred hccCCCcceEEEEEeCC
Q 020548 219 ANKEYGFGGLLCLDMET 235 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 321 ------g~~~~~~~~~~ 331 (393)
T PRK05764 321 ------GAFYVFPNVSK 331 (393)
T ss_pred ------cceEEEEeccc
Confidence 56678888863
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=213.44 Aligned_cols=206 Identities=20% Similarity=0.199 Sum_probs=154.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|..+...+.. .+..+..++. .|++++++.+ +++++++++++|+|
T Consensus 104 ~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~N 177 (402)
T PRK06107 104 QAIFLALMATLEAGDEVIIPAPYWVSYPDMVLA-----NDGTPVIVACPEEQGFKLTPEALEAAI-TPRTRWLILNAPSN 177 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHH-----cCCEEEEecCCcccCCCCCHHHHHhhc-CcCceEEEEECCCC
Confidence 578888888899999999999999988876632 3444444432 2678999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhc-CCEEEEcCCCCcCCCCc------cC-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 75 PTLAVAN---IPELSRLAHDK-GVTVVVDNTFSPLVLSP------AR-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~-~~~~ivD~~~~~~~~~~------~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|||.+.+ +++++++|+++ ++++|+||+|..+.+.. .. .+..++++|+||.|+.+|.|+ ||++++
T Consensus 178 PtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~~~~ 256 (402)
T PRK06107 178 PTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRI-GYAAGP 256 (402)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccce-eeeecC
Confidence 9999986 56778889998 99999999996553211 11 136799999999999899997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++.+.+..... ....+.+.+.+.++..++.. ..++....+.+.++++.+.+.|++. +..+..|.
T Consensus 257 ~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~------------ 323 (402)
T PRK06107 257 ADLIAAINKLQS-QSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPD------------ 323 (402)
T ss_pred HHHHHHHHHHHH-hcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC------------
Confidence 999998887765 11233455555555555542 2345566677899999999999886 43444343
Q ss_pred HhccCCCcceEEEEEeC
Q 020548 218 MANKEYGFGGLLCLDME 234 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|+.++
T Consensus 324 -------gg~~~~~~~~ 333 (402)
T PRK06107 324 -------GAFYLYVNCA 333 (402)
T ss_pred -------cceEEeeecc
Confidence 5778888873
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=213.11 Aligned_cols=214 Identities=15% Similarity=0.180 Sum_probs=158.9
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
++|..++++++++| |+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ .++++|++++||||
T Consensus 85 e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~-----~~G~~~~~v~~~~~~~~d~~~l~~~~--~~~~lv~l~nPnNP 157 (351)
T PRK01688 85 EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVEIRTVPTLDNWQLDLPAIADNL--DGVKVVYVCSPNNP 157 (351)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH-----HcCCEEEEeecCCCCCCCHHHHHHhc--cCCcEEEEeCCCCC
Confidence 57888888889997 999999999999987773 368887777653 788998877 47899999999999
Q ss_pred cccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||.+.+.+++.++++. .+.++|+||+|..|.... ...+..++++|+||+||.+|.|+ ||+++++++++.+.
T Consensus 158 TG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRi-Gy~i~~~~~i~~l~ 236 (351)
T PRK01688 158 TGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRC-GFTLANEEVINLLL 236 (351)
T ss_pred CCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHH-hHHhCCHHHHHHHH
Confidence 9999987776666543 268999999997765321 12357899999999999999997 99999999999988
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+.... +..+.+.+..+..++.. ...+...++.+.++++++.+.|++.+. ....|+
T Consensus 237 ~~~~~---~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps------------------- 294 (351)
T PRK01688 237 KVIAP---YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDS------------------- 294 (351)
T ss_pred hccCC---CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC-------------------
Confidence 76552 23333444444444432 234556666778889999999998743 334455
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.++++++.+++ ...+.+.|..
T Consensus 295 ~~nfi~~~~~~---~~~l~~~L~~ 315 (351)
T PRK01688 295 ETNYILARFTA---SSAVFKSLWD 315 (351)
T ss_pred CCcEEEEEcCC---HHHHHHHHHH
Confidence 57789998863 3456666553
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=215.26 Aligned_cols=206 Identities=18% Similarity=0.146 Sum_probs=151.7
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEE
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~ 68 (324)
+||..++++++ ++||+|++++|+|+.+...++ ..|.++..++.+ |++++++++.. .++++++
T Consensus 149 ~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~ 223 (481)
T PTZ00377 149 SGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT-----LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALV 223 (481)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEE
Confidence 57888999988 799999999999999998884 356666666532 67999998832 1799999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc--------CCC-------CcEEEeCCccc-cc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA--------RLG-------ADVVVHSISKF-IS 126 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~--------~~~-------~d~~~~S~sK~-~~ 126 (324)
+++||||||.+++ +++|+++|+++|++||+||+|..+.++ +. .+. ..++++|+||. ++
T Consensus 224 l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~ 303 (481)
T PTZ00377 224 VINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIG 303 (481)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCccccc
Confidence 9999999999987 788999999999999999999665431 11 111 35889999997 58
Q ss_pred cCCCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----c---cHH----HHHHHHHHHHHHHHH
Q 020548 127 GGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----P---HLG----LRMKEHCHRALIFAR 192 (324)
Q Consensus 127 ~~g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~----~~~~~~~~~~~~l~~ 192 (324)
++|+|+ ||+++ ++++++.+..... . ..+.+.+.+.++..++... . ... ...+++.++++.+.+
T Consensus 304 ~~GlRi-G~~~~~~~p~~li~~l~~~~~-~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~ 380 (481)
T PTZ00377 304 ECGRRG-GYFELTNIPPEVREQIYKLAS-I-NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTD 380 (481)
T ss_pred CCcCce-EEEEEeCCCHHHHHHHHHHhh-e-ecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899997 99985 8899998887654 1 1344555666655555421 1 121 222346788999999
Q ss_pred HHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|+++ +..+..|. +|.++|+.++
T Consensus 381 ~L~~~~g~~~~~p~-------------------gg~fl~~~~~ 404 (481)
T PTZ00377 381 ELNKIEGVSCQPVE-------------------GAMYAFPRIE 404 (481)
T ss_pred HHhcCCCcEeecCC-------------------eeEEEEeecc
Confidence 99887 44555454 5777886664
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=211.47 Aligned_cols=205 Identities=15% Similarity=0.140 Sum_probs=154.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+..... ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 107 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~N 180 (409)
T PLN02656 107 QAIDVALSMLARPGANILLPRPGFPIYELCAA-----FRHLEVRYVDLLPEKGWEVDLDAVEALA-DQNTVALVIINPGN 180 (409)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHH-----HcCCEEEEEeCCCcCCCCCCHHHHHHHh-ccCceEEEEECCCC
Confidence 57888888889999999999999998876652 26777777664 2789999988 77899999999999
Q ss_pred Cccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEcC---
Q 020548 75 PTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCGP--- 139 (324)
Q Consensus 75 ptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~--- 139 (324)
|||.+. ++++|+++|+++|+++|+||+|..+.++. . .....++++|+||.|+++|+|+ ||++++
T Consensus 181 PtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRi-G~~i~~~~~ 259 (409)
T PLN02656 181 PCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRL-GWFVTTDPS 259 (409)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeE-EEEEEeCcc
Confidence 999996 57888999999999999999997664321 1 1136799999999999999997 999983
Q ss_pred -----hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCCc
Q 020548 140 -----ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDHP 210 (324)
Q Consensus 140 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~~ 210 (324)
+++++.+...... ..+.+.+.+.++..++... ..+....+++.++++.+.+.|++.+. . +..|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~----- 332 (409)
T PLN02656 260 GSFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPE----- 332 (409)
T ss_pred cccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCC-----
Confidence 5777877765441 1223344555555555432 23556667788899999999988643 2 12233
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 333 --------------gg~~~w~~l~ 342 (409)
T PLN02656 333 --------------GSMAVMVKLN 342 (409)
T ss_pred --------------eEEEEEEecc
Confidence 6788999985
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=210.14 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=176.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++++++++||+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 99 ~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPt 172 (371)
T PRK05166 99 DLIAVICRAVLRPGDRVVTLYPSFPLHEDYPT-----MMGARVERVTVTPDLGFDLDALCAAV-ARAPRMLMFSNPSNPV 172 (371)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCeEEEeecCCCCCCCHHHHHHhh-hcCCCEEEEeCCCCCC
Confidence 57788888889999999999999998887763 268888777653 789999988 7788999999999999
Q ss_pred ccccChHHHHHHHHh--cCCEEEEcCCCCcCCCC----c-c----CC-CCcEEEeCCccccccCCCeeEEEEEc-ChhHH
Q 020548 77 LAVANIPELSRLAHD--KGVTVVVDNTFSPLVLS----P-A----RL-GADVVVHSISKFISGGADIIAGAVCG-PANLV 143 (324)
Q Consensus 77 G~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~----~-~----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~ 143 (324)
|.+.+.+++.++++. .++++|+||+|..+... + . +. ...++++|+||.|+.+|.|+ ||++. ++++.
T Consensus 173 G~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRi-G~~i~~~~~l~ 251 (371)
T PRK05166 173 GSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRV-GYGLVSDPELV 251 (371)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhhe-eeeecCCHHHH
Confidence 999987766666653 47899999999665421 1 1 11 35699999999999899997 99764 77888
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+.+...... ...+.+.+..+...+....+++...+.+.++++.+.+.|++.+..+ .|.
T Consensus 252 ~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~-~p~------------------ 309 (371)
T PRK05166 252 GLLDRVRTP---FNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMGYRI-APS------------------ 309 (371)
T ss_pred HHHHHhccC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcCee-CCC------------------
Confidence 888765431 2233344434443444334566666778888999999999987653 343
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.|.++|+.++. ....+.+.+.. .|+ .+ .|+.. .+ ..+++|+|++ ..
T Consensus 310 -~g~fl~~~~~~--~~~~l~~~l~~---~gi-~v----------~p~~~------------~~-~~~~iRi~~~-~~--- 355 (371)
T PRK05166 310 -RANFLFFDARR--PASAVAEALLR---QGV-IV----------KPWKQ------------PG-FETFIRVSIG-SP--- 355 (371)
T ss_pred -cCCEEEEeCCC--CHHHHHHHHHH---CCe-EE----------ecCCC------------CC-CCCeEEEEcC-CH---
Confidence 46788998752 24556666653 233 11 22111 01 2589999999 43
Q ss_pred HHHHHHHHHHHhh
Q 020548 304 QRWSQFEKALSRM 316 (324)
Q Consensus 304 ~~~~~l~~~l~~~ 316 (324)
+..+.|.++|+.+
T Consensus 356 ~~~~~l~~~l~~i 368 (371)
T PRK05166 356 EENDHFVAALDKV 368 (371)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566666554
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=212.34 Aligned_cols=215 Identities=14% Similarity=0.131 Sum_probs=158.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+||..+++++++|||+|++++|+|+.+...++ ..|.++..++.+ |++++++ .+++|++++|||||
T Consensus 88 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~-----~~~~v~~~~P~NPt 157 (353)
T PRK05387 88 EVLAHAFLAFFNHDRPLLFPDITYSFYPVYAG-----LYGIPYEEIPLDDDFSIDVEDYLR-----PNGGIIFPNPNAPT 157 (353)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHH-----HcCCEEEEeecCCCCCCCHHHHHh-----cCCEEEEeCCCCCC
Confidence 67889999999999999999999988887663 367777777653 5666642 45789999999999
Q ss_pred ccccChHHHHHHHHhc-CCEEEEcCCCCcCCCCc-c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 77 LAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSP-A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~~~-~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.+.+.+++.++++.+ ++++|+||+|..+...+ . ..+.+++++|+||.++.+|.|+ ||+++++++.+.+....
T Consensus 158 G~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~~~~~~~~~~~l~~~~ 236 (353)
T PRK05387 158 GIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRV-GFAIGHPELIEALNRVK 236 (353)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhc-eeeecCHHHHHHHHHhh
Confidence 9999999999998875 99999999996553211 1 1256899999999999999997 99999999999887765
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
........+.+.+.++..++.....+++..+++.++++.+.+.|++.+..+ .|. .|+++|
T Consensus 237 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~-------------------~~~~~~ 296 (353)
T PRK05387 237 NSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALGFEV-LPS-------------------KANFVF 296 (353)
T ss_pred ccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeE-CCC-------------------cCcEEE
Confidence 411011222334444434444334455666777889999999999987654 243 466888
Q ss_pred EEeCCHHHHHHHHHHhhc
Q 020548 231 LDMETEEKANRLMNYLQN 248 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~ 248 (324)
+.+++ .+..++.+.+..
T Consensus 297 ~~~~~-~~~~~~~~~l~~ 313 (353)
T PRK05387 297 ARHPS-HDAAELAAKLRE 313 (353)
T ss_pred EECCC-CCHHHHHHHHHH
Confidence 88863 235566666653
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=210.98 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=148.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..+++++++|||.|+++.|+|+.+...++ ..|.++..++. .|++++++++..++++++++++|+|||
T Consensus 99 ~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPt 173 (368)
T PRK03317 99 EILQQLLQAFGGPGRTALGFVPSYSMHPIIAR-----GTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPT 173 (368)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----hcCCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCC
Confidence 57889999999999999999999999988774 25666666543 278999999844688999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----cC----CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|.+.+.+++.++++..++++|+||+|+.+.... .. .+..++++|+||.||.+|.|+ ||+++++++++.+..
T Consensus 174 G~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~~~~~~~~~~l~~ 252 (368)
T PRK03317 174 GTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRL-GYLAAAPAVVDALRL 252 (368)
T ss_pred CCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhh-hhhhCCHHHHHHHHh
Confidence 999999999999999899999999997664221 11 135689999999999899997 999999999998876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
... .+..+.+.+.++..++.....+.+.++++.++++.+.+.|++.+..+.
T Consensus 253 ~~~---~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (368)
T PRK03317 253 VRL---PYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRELGLRVA 303 (368)
T ss_pred cCC---CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCEeC
Confidence 553 133344444444444444344445566678888899999998876544
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=209.50 Aligned_cols=206 Identities=15% Similarity=0.115 Sum_probs=146.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..++++++++||+|++++|+|..+...++ ..|.++..++. .|++++++++ ++++++|++++|+|
T Consensus 106 ~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~N 179 (404)
T PRK09265 106 ELIVMAMQALLNNGDEVLVPAPDYPLWTAAVS-----LSGGKPVHYLCDEEAGWFPDLDDIRSKI-TPRTKAIVIINPNN 179 (404)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcChHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHhc-cccceEEEEECCCC
Confidence 46788888889999999999999999888774 24555544432 2689999988 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEc--Ch
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCG--PA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~--~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++. ... ...++++|+||.|+++|+|+ ||++. ++
T Consensus 180 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~~ 258 (404)
T PRK09265 180 PTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRV-GWMVLSGPK 258 (404)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccce-EEEEEeCch
Confidence 9999988 8889999999999999999996654221 111 24578899999999999997 99984 44
Q ss_pred hH----HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHH---HHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchh
Q 020548 141 NL----VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR---MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHH 212 (324)
Q Consensus 141 ~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~ 212 (324)
++ ++.+..... ...+.+.+.+.++..++...+..... .+++.++++.+.+.|++. +..+..|.
T Consensus 259 ~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~------- 329 (404)
T PRK09265 259 KHAKGYIEGLDMLAS--MRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPK------- 329 (404)
T ss_pred HHHHHHHHHHHHHhc--cccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC-------
Confidence 43 333322211 11334455555555555433333322 245677788899999876 33444344
Q ss_pred HHHHHHhccCCCcceEEEEEeCC
Q 020548 213 ELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 330 ------------~g~~l~~~~~~ 340 (404)
T PRK09265 330 ------------GALYAFPKLDP 340 (404)
T ss_pred ------------cceEEEEEecc
Confidence 68889988863
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=211.26 Aligned_cols=213 Identities=15% Similarity=0.192 Sum_probs=156.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++.+++++||+|++++|+|+.+...++ ..|.++..++. .|++++++.+ +++++++++++|+|||
T Consensus 98 ~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~p~npt 171 (361)
T PRK00950 98 EVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK-----AHGAKPVYAKREEDFSLDVDSVLNAI-TEKTKVIFLCTPNNPT 171 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeecCCCCCcCHHHHHHHh-ccCCCEEEEeCCCCCC
Confidence 35677778888999999999999998877663 26777777753 2789999988 7789999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc---c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP---A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.++|+++|+++|+|++|.++.... . ..+..++++|+||.+|++|.|+ ||+++++++++.+.....
T Consensus 172 G~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~ 250 (361)
T PRK00950 172 GNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRI-GYGFVPEWLIDYYMRAKT 250 (361)
T ss_pred CCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhc-chhcCCHHHHHHHHHhcC
Confidence 999999999999999999999999996654211 1 2245789999999999899997 999999999988877654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
. ...+.+.+..+..++....+++...+++.++++.+.+.|. ..+ .|. .|+++|+
T Consensus 251 ~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---~~~-~~~-------------------~~~~i~~ 304 (361)
T PRK00950 251 P---FSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP---FKV-YPS-------------------EANFVLV 304 (361)
T ss_pred C---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---eeE-CCC-------------------cceEEEE
Confidence 1 2233334333333444333344455556666777766664 222 233 4678999
Q ss_pred EeCCHHHHHHHHHHhhc
Q 020548 232 DMETEEKANRLMNYLQN 248 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~ 248 (324)
.+++ .+...+.+.+..
T Consensus 305 ~~~~-~~~~~~~~~l~~ 320 (361)
T PRK00950 305 DVTP-MTAKEFCEELLK 320 (361)
T ss_pred ECCC-CCHHHHHHHHHH
Confidence 8853 345667777664
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=209.63 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=163.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++.+++++||+|++++|+|+.+...++ ..|.++..++. .|++++++++ ++++++|++++|+|||
T Consensus 82 ~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~Npt 155 (346)
T TIGR01141 82 EIIELLIRAFLEPGDAVLVPPPTYSMYEISAK-----IHGAEVVKVPLDEDGQLDLEDILVAI-DDKPKLVFLCSPNNPT 155 (346)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEeccCCCCCCCHHHHHHhc-CCCCCEEEEeCCCCCC
Confidence 46778888888999999999999988776653 26888877765 3889999987 7889999999999999
Q ss_pred ccccChHHHHHHHHhc--CCEEEEcCCCCcCCCC--cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 77 LAVANIPELSRLAHDK--GVTVVVDNTFSPLVLS--PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~--~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|.+.+++++.++++.+ |+++|+|++|..+... +. ..+.+++++|+||+++++|.|+ ||++.++++.+.+..
T Consensus 156 G~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 156 GNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRI-GYAIANAEIIDALNK 234 (346)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhc-eeeecCHHHHHHHHh
Confidence 9999999999998877 9999999999655432 11 1245688999999999899997 999999999998877
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
.... ...+.+.+..+..++....++....+++.++++.+.+.|+++ +.++ .|. .|+
T Consensus 235 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~-------------------~g~ 291 (346)
T TIGR01141 235 VRAP---FNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEV-YPS-------------------DAN 291 (346)
T ss_pred ccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE-CCC-------------------cCC
Confidence 6541 223444444444444443345566677788999999999987 4443 233 467
Q ss_pred EEEEEeCCHHHHHHHHHHhhc
Q 020548 228 LLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~ 248 (324)
++|+.++. ..+++.+.+..
T Consensus 292 ~~~~~~~~--~~~~~~~~L~~ 310 (346)
T TIGR01141 292 FVLIRFPR--DADALFEALLE 310 (346)
T ss_pred EEEEecCC--CHHHHHHHHHH
Confidence 89999874 45667777664
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=205.12 Aligned_cols=246 Identities=18% Similarity=0.179 Sum_probs=171.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+||..++ .+.+||+|++++|+|+.+...++ ..|.++..++. +++++.+ + +++++++++||||||.+.+
T Consensus 75 ~al~~~~--~~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~---~~~~~~~-~-~~~~v~l~nP~NPTG~~~s 142 (330)
T PRK05664 75 AAIQALP--RLRAPGRVGVLSPCYAEHAHAWR-----RAGHQVRELDE---AEVEAAL-D-SLDVLVVVNPNNPTGRRFD 142 (330)
T ss_pred HHHHHHH--HccCCCEEEEcCCChHHHHHHHH-----HcCCeEEEech---hhHhhhh-c-CCCEEEEeCCcCCCCCccC
Confidence 4566554 35799999999999999998884 47889888864 4555655 3 6788999999999999987
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCC--CccC---CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVL--SPAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|+++|+++|+++|+||+|..+.. .... .+..++++||||.||.+|+|+ ||+++++++++.+......
T Consensus 143 ~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRi-G~~v~~~~l~~~~~~~~~~- 220 (330)
T PRK05664 143 PARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARL-GFVLAEPALLRALAELLGP- 220 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcce-EEEEeCHHHHHHHHHhcCC-
Confidence 45666667889999999999965532 1111 245699999999999899997 9999999999998876541
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
...+.+.+..+..++..........+++.++++.+.+.|++.+.. |. .+.+.++|+.+
T Consensus 221 --~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~-----------------~~~~~f~~~~~ 278 (330)
T PRK05664 221 --WTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHGLT---PA-----------------GGCALFQWVRT 278 (330)
T ss_pred --CCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCCCc---cc-----------------CCcceEEEEec
Confidence 223334444444445444444455666788999999999988642 22 02346778877
Q ss_pred CCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 234 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
++ ...+.+.+.. .|+.- .+ ++ .++++|+|+| . ..+..+.|.++|
T Consensus 279 ~~---~~~~~~~l~~---~gi~v-----------~~---------------f~-~~~~iRis~~-~--~~~~~~~l~~al 322 (330)
T PRK05664 279 ED---AAALHEFLAR---RGILT-----------RL---------------FE-QPASLRFGLP-A--DEADWARLDQAL 322 (330)
T ss_pred CC---HHHHHHHHHH---CCeEE-----------EE---------------CC-CCCeEEEECC-C--CHHHHHHHHHHH
Confidence 53 3556666553 33311 00 01 1368999999 5 344567888888
Q ss_pred Hhhhhc
Q 020548 314 SRMQDS 319 (324)
Q Consensus 314 ~~~~~~ 319 (324)
+.+.++
T Consensus 323 ~~~~~~ 328 (330)
T PRK05664 323 LAYRKE 328 (330)
T ss_pred HHHHhh
Confidence 877654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=210.14 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=153.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+||..++..+ +++||+|++++|+|+.+...++ ..|.++..++ +++++. ..++++|++++|+||||.+.
T Consensus 97 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~--~~~~l~----~~~~~~v~~~~p~NPtG~~~ 165 (364)
T PRK07865 97 ELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR-----LAGATVVRAD--SLTELG----PQRPALIWLNSPSNPTGRVL 165 (364)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcccHHHHHH-----hcCCEEEecC--ChhhCC----cccceEEEEcCCCCCCCccC
Confidence 5677777777 7999999999999999987773 3688887765 444432 36789999999999999997
Q ss_pred C---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 81 N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 81 ~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
+ +++|+++|+++|+++|+||+|..+..+. . ..+..++++|+||.|+.+|.|+ ||+++++++++.
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~i~~~~~~~~~ 244 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRA-GFVAGDPALVAE 244 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceee-EEEecCHHHHHH
Confidence 6 5688888999999999999996554221 1 1235699999999999999997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+...... ...+.+.+.+..+..++.....+....+.+.++++.+.+.|++.+..+..|. +
T Consensus 245 ~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~ 304 (364)
T PRK07865 245 LLEVRKH-AGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAAGFRVDHSE-------------------A 304 (364)
T ss_pred HHHHHHh-cCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC-------------------c
Confidence 8876541 1122334444444444443334555666778899999999998876554443 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhh
Q 020548 226 GGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
|.++|+.++. ....+.+.+.
T Consensus 305 ~~~~~~~~~~--~~~~~~~~l~ 324 (364)
T PRK07865 305 GLYLWATRGE--DCWDTVAWLA 324 (364)
T ss_pred cEEEEEeCCC--CHHHHHHHHH
Confidence 6678888752 2334555554
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=210.08 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=158.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..++.+ +++++++++ ++++++|++++|+
T Consensus 99 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~g~~~~~~~~l~~~~-~~~~~~v~i~~p~ 172 (397)
T PRK07568 99 EAILFAMMAICDPGDEILVPEPFYANYNGFAT-----SAGVKIVPVTTKIEEGFHLPSKEEIEKLI-TPKTKAILISNPG 172 (397)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCccHHHHHH-----HcCCEEEEeecCcccCCCCCCHHHHHHhc-CccceEEEEECCC
Confidence 57888888889999999999999998877663 267777776642 468898888 7889999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcC-
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGP- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~- 139 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+.++. .. .+..+++.|+||.|+++|.|+ ||++++
T Consensus 173 NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~~~~~~ 251 (397)
T PRK07568 173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARI-GCLISKN 251 (397)
T ss_pred CCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcce-EEEecCC
Confidence 99999975 7889999999999999999997664221 11 135699999999999999997 999874
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+...... ..+.+.+.+.++..++... .++....+.+.++++.+.+.|++.+ ..+..|.
T Consensus 252 ~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------------ 317 (397)
T PRK07568 252 KELIAAAMKLCQA--RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPK------------ 317 (397)
T ss_pred HHHHHHHHHHhhc--cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC------------
Confidence 6787777654331 1334445555555555433 2345556667899999999998873 3444343
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|++++.. ....+.+.+
T Consensus 318 -------g~~~~~~~l~~~-~~~~~~~~l 338 (397)
T PRK07568 318 -------GAFYIIAKLPVD-DAEDFAKWL 338 (397)
T ss_pred -------cceEEEEecCCC-CHHHHHHHH
Confidence 566789998732 344555554
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=211.70 Aligned_cols=215 Identities=17% Similarity=0.206 Sum_probs=161.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++..+++|||+|+++.|+|..+...++ ..|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 85 ~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPt 158 (352)
T PRK03321 85 ALCQQLVQATAGPGDEVIFAWRSFEAYPILVQ-----VAGATPVQVPLTPDHTHDLDAMAAAI-TDRTRLIFVCNPNNPT 158 (352)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHH-----HcCCEEEEccCCCCCCCCHHHHHHhh-ccCCCEEEEeCCCCCc
Confidence 35667777888999999999999998877663 267777777654 789999998 7789999999999999
Q ss_pred ccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 77 LAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 77 G~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|.+.+.+++.++|+. +++++|+||+|..+.... . ..+..++++|+||.||++|.|+ ||+++++++++.
T Consensus 159 G~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~~v~~~~~~~~ 237 (352)
T PRK03321 159 GTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRV-GYAVGHPEVIAA 237 (352)
T ss_pred CCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhh-hhhcCCHHHHHH
Confidence 999999999999987 589999999996654321 1 1246799999999999899997 999999999999
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+...... ...+.+.+..+...+.....+.++.++..++++.+.+.|++.+..+. |. .
T Consensus 238 ~~~~~~~---~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~-~~-------------------~ 294 (352)
T PRK03321 238 LRKVAVP---FSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAAGWTVP-PS-------------------Q 294 (352)
T ss_pred HHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-CC-------------------C
Confidence 8875431 33344444444444444444555666666777889999988765432 22 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhc
Q 020548 226 GGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
|+++|+.++. ....+.+.+..
T Consensus 295 g~~i~i~l~~--~~~~~~~~l~~ 315 (352)
T PRK03321 295 ANFVWLPLGE--RTADFAAAAAE 315 (352)
T ss_pred CCEEEEeCCC--CHHHHHHHHHH
Confidence 7789998853 24567777653
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=208.38 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=144.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEe-cC------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DI------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~-~~------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+.+...++ ..|.++..+ +. .|++++++.+ ++++++|++++|+|
T Consensus 104 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~N 177 (398)
T PRK08363 104 EALQLIFGALLDPGDEILIPGPSYPPYTGLVK-----FYGGVPVEYRTIEEEGWQPDIDDIRKKI-TEKTKAIAVINPNN 177 (398)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEEEeccccccCCcCCHHHHHhhC-CcceEEEEEECCCC
Confidence 57888898999999999999999999988774 256555554 22 2688999888 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC---CCCcEEEeCCccccccCCCeeEEEEEc--Chh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR---LGADVVVHSISKFISGGADIIAGAVCG--PAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~--~~~ 141 (324)
|||.+.+ +++|.++|+++|+++|+||+|..+.++. .. ....++++|+||+|+++|.|+ ||++. +++
T Consensus 178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~~~~~~~~~ 256 (398)
T PRK08363 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRL-GYIYFVDPEG 256 (398)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceE-EEEEEeCcHH
Confidence 9999986 8889999999999999999996654321 11 135788999999999999997 99986 777
Q ss_pred HHHHHHHhhhhh--hhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCC
Q 020548 142 LVNSMMDLHQGA--LMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYP 204 (324)
Q Consensus 142 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p 204 (324)
+++.+....... ...+.+.+.+..+..++.. ..++....+++.++++.+.+.|++.+ ..+..|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 323 (398)
T PRK08363 257 KLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKP 323 (398)
T ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCC
Confidence 776665443211 0123344555555545543 34455666778899999999998873 344333
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=207.99 Aligned_cols=218 Identities=16% Similarity=0.188 Sum_probs=157.2
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
++|+..++.+++++||+|++++|+|..+...+. ..|.++..++. .|++++++++ +++++++++++|+
T Consensus 106 t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~i~~p~ 179 (403)
T TIGR01265 106 SQAIEICIEALANPGANILVPRPGFPLYDTRAA-----FSGLEVRLYDLLPEKDWEIDLDGLEALA-DEKTVAIVVINPS 179 (403)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEecCCcccCCccCHHHHHHHh-CcCccEEEEecCC
Confidence 367888999999999999999999998877663 26777776653 2789999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEcC--
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCGP-- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~-- 139 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+.++. ..+ ...++++|+||.|+.||.|+ ||++++
T Consensus 180 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~ 258 (403)
T TIGR01265 180 NPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRL-GWIIIHDP 258 (403)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceE-EEEEEeCc
Confidence 99999975 7899999999999999999997764321 111 24689999999999999997 999873
Q ss_pred hh-----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 140 AN-----LVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 140 ~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
++ +.+.+...... ....+.+.+.++..++.. ..++....+++.++++.+.+.|++. +..+..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------ 330 (403)
T TIGR01265 259 HGIFRDTVLQGLKNLLQR--ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPE------ 330 (403)
T ss_pred hhhhHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC------
Confidence 22 33334333220 123344455555444432 2335566677888999999999887 33444444
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHh
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 246 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l 246 (324)
+|.++|++++.. .+...+++.+
T Consensus 331 -------------~g~f~~~~~~~~~~~~~~~~~~~~~~l 357 (403)
T TIGR01265 331 -------------GAMYLMVKLELELFPEIKDDVDFCEKL 357 (403)
T ss_pred -------------ceeEEEEeccccccCCCCCHHHHHHHH
Confidence 688999998632 1345565553
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=207.47 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=149.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CH-HHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DH-EMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~-~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+++..+++++ .+|| +++.+|+|..+...++ ..|.++..++.+ ++ +++++.+ ++++++|++++||||
T Consensus 83 ~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~~k~v~l~~p~NP 154 (356)
T PRK08056 83 ESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQ-----QVGCEIRRYSLREADGWQLTDAILEAL-TPDLDCLFLCTPNNP 154 (356)
T ss_pred HHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHH-----HcCCeEEEEecccccCCCccHHHHHhc-cCCCCEEEEeCCcCC
Confidence 4677777765 6776 6778899999887773 368888777642 22 3556666 688999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------c-CCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A-RLGADVVVHSISKFISGGADIIAGAVCG-PANLVN 144 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~ 144 (324)
||.+.+ +++|+++|+++++++|+||+|.++.... . ..+.+++++|+||+|+++|.|+ ||+++ ++++.+
T Consensus 155 TG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~v~~~~~~~~ 233 (356)
T PRK08056 155 TGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRL-GYLVNSDDAAVA 233 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhh-eeeecCCHHHHH
Confidence 999987 7788999999999999999996654221 1 2357899999999999999997 99997 467777
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+...... ...+.+.+.++..++....+.....+++.++++.+.+.|++.+. .+. |.
T Consensus 234 ~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~------------------ 291 (356)
T PRK08056 234 RMRRQQMP---WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW-PG------------------ 291 (356)
T ss_pred HHHHhCCC---CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CC------------------
Confidence 77664431 12222333333334433333445556678999999999988743 332 33
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|+++|+.++.. ...+.+.+..
T Consensus 292 -~~~~~~~~~~~~--~~~~~~~l~~ 313 (356)
T PRK08056 292 -RANYLFLRCERP--DIDLQRALLT 313 (356)
T ss_pred -CCcEEEEEcCCC--hHHHHHHHHH
Confidence 467889988632 3456666653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=206.65 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=152.1
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++..+ +++||.|++++|+|+.+...++ ..|.++..++ +++.+. .+++++|++++|+||||.+.
T Consensus 91 ~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~--~~~~l~----~~~~~~v~~~~p~NPtG~~~ 159 (357)
T TIGR03539 91 ELVAWLPTLLGLGPGDTVVIPELAYPTYEVGAL-----LAGATPVAAD--DPTELD----PVGPDLIWLNSPGNPTGRVL 159 (357)
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHH-----hcCCEEeccC--ChhhcC----ccCccEEEEeCCCCCcCccC
Confidence 4677777777 7999999999999999887763 3678777764 544332 46789999999999999998
Q ss_pred C---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c---c-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 81 N---IPELSRLAHDKGVTVVVDNTFSPLVLS--P---A-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 81 ~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~---~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
+ +++|.++|+++|+++|+||+|..+.++ + . .....++++|+||.|+++|+|+ ||+++++++++.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~-G~~i~~~~~~~~ 238 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA-GFVAGDPALVAE 238 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeE-EEEecCHHHHHH
Confidence 6 667889999999999999999654321 1 1 1235699999999999999997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+..... ....+.+.+.+.++..++.....+....+.+.++++.+.+.|++.+..+..|. +
T Consensus 239 ~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~-------------------~ 298 (357)
T TIGR03539 239 LLTVRK-HAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAGFRIDHSE-------------------A 298 (357)
T ss_pred HHHHHh-hcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-------------------c
Confidence 877654 11123333444444444433233445556678889999999998876554343 5
Q ss_pred ceEEEEEeCCHHHHHHHHHHhh
Q 020548 226 GGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
|.++|+.++. ....+.+.+.
T Consensus 299 ~~~~~~~~~~--~~~~~~~~l~ 318 (357)
T TIGR03539 299 GLYLWATRGE--DAWDTVDRLA 318 (357)
T ss_pred cEEEEEECCC--CHHHHHHHHH
Confidence 6678888753 2344555554
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=205.28 Aligned_cols=211 Identities=12% Similarity=0.178 Sum_probs=152.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..+++++ .+ ++|+++.|+|+.+...++ ..|.++..++.+ | +++.+.+ ..+++++++++|||
T Consensus 82 ~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d-~~~~~~~-~~~~~~v~~~~P~N 152 (354)
T PRK06358 82 ELIFNIVKVT-KP-KKVLILAPTFAEYERALK-----AFDAEIEYAELTEETNFAAN-EIVLEEI-KEEIDLVFLCNPNN 152 (354)
T ss_pred HHHHHHHHHh-CC-CcEEEecCChHHHHHHHH-----HcCCeeEEEeCccccCCCcc-HHHHHhh-ccCCCEEEEeCCCC
Confidence 5677777775 44 689999999999988774 257777666542 4 4555556 56799999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEc-Chh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCG-PAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+..+. . ..+..++++|+||.||++|.|+ ||++. +++
T Consensus 153 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~Ri-G~lv~~~~~ 231 (354)
T PRK06358 153 PTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRL-GYGLTSNKN 231 (354)
T ss_pred CCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhh-eeeecCCHH
Confidence 9999986 7788888999999999999997665321 1 1246799999999999899997 99987 467
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+.+...... ...+.+.+..+..++....++...++.+.++++.+.+.|++.+. .+..|
T Consensus 232 ~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~---------------- 292 (354)
T PRK06358 232 LAEKLLQMREP---WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKP---------------- 292 (354)
T ss_pred HHHHHHHhCCC---CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC----------------
Confidence 88888776541 22333444444445543334456667778899999999988733 43323
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|+++|+++++. ..|.+.+..
T Consensus 293 ----~g~f~~~~~~~~---~~~~~~l~~ 313 (354)
T PRK06358 293 ----SVNFIFFKLEKP---IDLRKELLK 313 (354)
T ss_pred ----cceEEEEEcCch---HHHHHHHHH
Confidence 356899999743 456666553
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=207.58 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=144.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc-CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ-GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-~~~~~v~~~~~~ 73 (324)
+||..++. ++.|||.|++++|+|+.+...... . .|.++..++. .|++++++++.. ++++++++++||
T Consensus 107 ~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~---~-~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~ 181 (433)
T PRK06855 107 DAIAKIYG-LLRREARVIGPSPAYSTHSSAEAA---H-AGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPD 181 (433)
T ss_pred HHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHH---h-cCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCC
Confidence 56777764 789999999999999987643211 1 3555554432 278999999832 468999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC---CCcEEEeCCccccccCCCeeEEEEEcC--
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL---GADVVVHSISKFISGGADIIAGAVCGP-- 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~-- 139 (324)
||||.+++ +++|+++|+++|++||+||+|..+.++. ..+ +..++++|+||.|++||+|+ ||++.+
T Consensus 182 NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi-G~ii~p~~ 260 (433)
T PRK06855 182 NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC-GWIEVYNA 260 (433)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE-EEEEEeCC
Confidence 99999986 5678888999999999999997664321 111 24599999999999899997 999863
Q ss_pred ---hh---HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 140 ---AN---LVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 140 ---~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
+. +++.+..... ...+.+++.+.++..++... .++++..+.+.++++.+.+.|++. +..+..|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~---- 334 (433)
T PRK06855 261 DKDEVFKKYINSILNAKM--IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTN---- 334 (433)
T ss_pred chhhHHHHHHHHHHHhhc--cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCC----
Confidence 22 2233322221 11234455555555555432 234556667899999999999876 33444344
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 335 ---------------gg~~~w~~l~~ 345 (433)
T PRK06855 335 ---------------GAFYMTVVFED 345 (433)
T ss_pred ---------------eeEEEeecccc
Confidence 67899999974
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=207.04 Aligned_cols=248 Identities=15% Similarity=0.219 Sum_probs=172.6
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
++|..++++++++| |+|++++|+|+.+...++ ..|.++..++.+ |++.++ .+ +++++|++++||||
T Consensus 88 ~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~-----~~g~~v~~v~~~~~~~~~~~~l~-~~--~~~~li~i~nP~NP 159 (354)
T PRK04635 88 EAIELLIRAFCEPGQDSIACFGPTYGMYAISAE-----TFNVGVKALPLTADYQLPLDYIE-QL--DGAKLVFICNPNNP 159 (354)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEEecCCCCCCCHHHHH-hc--cCCCEEEEeCCCCC
Confidence 57889999999999 999999999999887663 368888877653 567765 33 58999999999999
Q ss_pred cccccChHHHHHHHHhc-CCEEEEcCCCCcCCCCc--c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 76 TLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSP--A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~~~--~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
||.+.+.+++.++++.. ++++|+||+|..+.... . ..+..++++|+||+||.+|.|+ ||+++++++++.+..
T Consensus 160 TG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRl-G~~i~~~~~~~~l~~ 238 (354)
T PRK04635 160 TGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARC-GFTLANEELIEILMR 238 (354)
T ss_pred CCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHH-hhhhCCHHHHHHHHh
Confidence 99999999999888763 69999999996654211 1 1246689999999999899997 999999999988876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 149 LHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
.... ...+.+.+..+..++.. ...+....+++.++++.+.+.|++++ ..+. |. .
T Consensus 239 ~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~-------------------~ 295 (354)
T PRK04635 239 VIAP---YPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EG-------------------N 295 (354)
T ss_pred hcCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CC-------------------C
Confidence 5431 22233333333333332 23345556677888999999999886 3443 43 3
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++++.+++. ..+.+.+.. .|+ .+. +... ...++++|+|++ ..++
T Consensus 296 g~f~~~~~~~~---~~~~~~l~~---~gv-~v~----------~~~~-------------~~~~~~lRis~~----~~e~ 341 (354)
T PRK04635 296 GNYVLAKFDDV---DAVFKALWD---AGI-VAR----------AYKD-------------PRLANCIRFSFS----NRAE 341 (354)
T ss_pred CcEEEEECCCH---HHHHHHHHH---CCE-EEE----------ECCC-------------CCCCCeEEEEeC----CHHH
Confidence 66888888643 344444442 232 111 0000 012478999999 3455
Q ss_pred HHHHHHHHHh
Q 020548 306 WSQFEKALSR 315 (324)
Q Consensus 306 ~~~l~~~l~~ 315 (324)
++.|.++|++
T Consensus 342 ~~~l~~al~~ 351 (354)
T PRK04635 342 TDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHH
Confidence 6677776653
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=206.27 Aligned_cols=263 Identities=18% Similarity=0.251 Sum_probs=176.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|++++|+|..+...++ . .|.++.+++. .|++++++.+ +++++++++++|+
T Consensus 94 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~----~-~g~~~~~v~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~ 167 (380)
T PRK06225 94 ESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS----R-FGAEVIEVPIYSEECNYKLTPELVKENM-DENTRLIYLIDPL 167 (380)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----H-hCceEEeeccccccCCccCCHHHHHhhc-CCCceEEEEeCCC
Confidence 57888888899999999999999998876663 2 6777776653 2789999988 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--c-c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P-A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||||.+.+ +++|.++|+++|+++|+||+|..+... + . ..+.++++.|+||++|++|.|+ ||+++++++++.
T Consensus 168 NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Ri-G~i~~~~~l~~~ 246 (380)
T PRK06225 168 NPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRI-GAVVATPDLIEV 246 (380)
T ss_pred CCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCcccee-EEEecCHHHHHH
Confidence 99999865 889999999999999999998544321 1 1 2256789999999999899997 999999999988
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhC-CCce-eCCCCCCCchhHHHHHHhccC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKL-GLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+...... ..+.+.+.+..+...+..... ++...+.+.++++.+.+.|++. +..+ ..|.
T Consensus 247 ~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------- 307 (380)
T PRK06225 247 VKSIVIN--DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPS----------------- 307 (380)
T ss_pred HHHHHhc--ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCC-----------------
Confidence 8765421 122233333333333333222 3333334566777788888875 3222 1232
Q ss_pred CCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC-
Q 020548 223 YGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG- 300 (324)
Q Consensus 223 ~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~- 300 (324)
.|+++|+.++. ..+..++.+.+.. .|+ .+ .|+..+. ....++++|+|++ ..
T Consensus 308 --~g~~~~~~~~~~~~~~~~l~~~l~~---~gi-~v----------~~g~~~~----------~~~~~~~iR~s~~-~~~ 360 (380)
T PRK06225 308 --HGNMMVIDISEAGIDPEDLVEYLLE---RKI-FV----------RQGTYTS----------KRFGDRYIRVSFS-IPR 360 (380)
T ss_pred --CCeEEEEEcccccCCHHHHHHHHHH---CCE-EE----------cCCcccC----------cCCCCceEEEEeC-CCH
Confidence 57788998863 2345667776653 333 22 2221100 0112479999999 52
Q ss_pred -CHHHHHHHHHHHHHhhh
Q 020548 301 -TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 301 -~~~~~~~~l~~~l~~~~ 317 (324)
+.++.++.|.++++.++
T Consensus 361 e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 361 EQVEVFCEEFPDVVETLR 378 (380)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 34444555555555554
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=207.12 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=147.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++++++|||+|++++|+|+.+..... ..|..+..++.+ +++++.+.. .++++|++++|||
T Consensus 93 ~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~~~l~~~~~~~~~~~~~~~~~--~~~k~i~l~~p~N 165 (357)
T PRK14809 93 GALDYLARAMLDPGDTVLVPDPGFAYYGMSAR-----YHHGEVREYPVSKADDFEQTADTVLDAY--DGERIVYLTSPHN 165 (357)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEEecccCcCCCcCHHHHHHhh--cCCcEEEEeCCCC
Confidence 57888899999999999999999987776552 245555554431 456665544 3689999999999
Q ss_pred CcccccChHHHHHHHHhc--CCEEEEcCCCCcCCCCcc------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 75 PTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLSPA------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~~~~------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|||.+.+.+++.++++.. ++++|+||+|..+...+. ..+..++++|+||.|+++|+|+ ||+++++++++.+
T Consensus 166 PTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~~~~~~~~~~~~ 244 (357)
T PRK14809 166 PTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRL-GYAVVPEEWADAY 244 (357)
T ss_pred CCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhh-eeeecCHHHHHHH
Confidence 999999887777776543 789999999976643221 1246799999999999999997 9999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...... ...+.+.+..+..++....+++...+.+.++++.+.+.|.... .|. .|
T Consensus 245 ~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~-------------------~g 298 (357)
T PRK14809 245 ARVNTP---FAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAPT----WES-------------------AG 298 (357)
T ss_pred HHhCCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCcc----CCC-------------------CC
Confidence 776431 2233333444444444333455555667777888888875431 233 57
Q ss_pred eEEEEEeCCHHHHHHHHHHhh
Q 020548 227 GLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.++|+++++ ..+|.+.+.
T Consensus 299 ~f~~~~~~~---~~~~~~~l~ 316 (357)
T PRK14809 299 NFVLAEVGD---ASAVAEAAQ 316 (357)
T ss_pred CEEEEECCC---HHHHHHHHH
Confidence 789998863 345666654
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=203.43 Aligned_cols=209 Identities=13% Similarity=0.072 Sum_probs=149.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++|..+++++. +||+|++++|+|+.+...++ ..|.++..++.+ +++++++.. .+++++++++
T Consensus 85 ~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~n 156 (360)
T PRK07392 85 ELLTWAGRELA-QLRAVYLITPAFGDYRRALR-----AFGATVKELPLPLDQPSPGLTLRLQTLPPQL--TPNDGLLLNN 156 (360)
T ss_pred HHHHHHHHHhC-CCCeEEEECCCcHHHHHHHH-----HcCCeEEEEecccccCCcccccCHHHHHHhc--cCCCEEEEeC
Confidence 57788887754 68999999999999998884 367777776553 345554433 4679999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c----CCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||||||.+.+.++|.++++++++ +|+||+|..+..+. . ..+..++++|+||.|+.+|+|+ ||+++++++
T Consensus 157 P~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRi-G~~v~~~~~ 234 (360)
T PRK07392 157 PHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRL-GYAIAHPDR 234 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchhe-eeeeCCHHH
Confidence 99999999999999999999985 66799997664321 1 1246799999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... ...+.+.+..+..++..........+.+.++++.+.+.|++.+. .+ .|+
T Consensus 235 ~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~---------------- 294 (360)
T PRK07392 235 LQRWQQWRDP---WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTP-LPS---------------- 294 (360)
T ss_pred HHHHHhhCCC---CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC----------------
Confidence 8888765431 22344444444445543333334445568888999999987633 33 233
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHH
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNY 245 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~ 245 (324)
+|++++++++. +..++.+.
T Consensus 295 ---~~~fl~~~~~~--~~~~l~~~ 313 (360)
T PRK07392 295 ---AANFLLVQSQG--SALQLQEK 313 (360)
T ss_pred ---CCCEEEEEcCC--CHHHHHHH
Confidence 57788888763 34455555
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=209.86 Aligned_cols=218 Identities=11% Similarity=0.130 Sum_probs=147.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee-----------EEEecCCCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-----------TTFVDISDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~-----------~~~~~~~d~~~l~~~l~~~~~~~v~~~ 70 (324)
+||..+ ..++.|||+|++++|+|+.+...++ ..|.+ +..++.+.-+.+...+.++++++|+++
T Consensus 110 ~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~ 183 (409)
T PRK07590 110 CDTGNI-LDIFGPDNTIAVTDPVYPVYVDTNV-----MAGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLC 183 (409)
T ss_pred HHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH-----HcCCcccccccccccceeEeecccccCCcccCcccCceEEEEe
Confidence 466664 4567899999999999999998884 24554 666654311112222324689999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----c-CC----CCcEEEeCCccccccCCCeeEEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-RL----GADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~-~~----~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+||||||.+++ +++|+++|+++|++||+||+|..+..+. . .. +..++++|+||.++.+|+|+ ||++
T Consensus 184 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRi-G~~i 262 (409)
T PRK07590 184 FPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRC-AYTV 262 (409)
T ss_pred CCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCcee-EEEE
Confidence 99999999986 5678888999999999999997654221 1 11 24688999999999899997 9999
Q ss_pred cChhHHHHH-----------HHhhhhhhhc-cCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 138 GPANLVNSM-----------MDLHQGALML-LGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 138 ~~~~~~~~l-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+++++++.+ ..... .... +.+.+.+.++..++.. ..++....+.+.++++.+.+.|++++..+..
T Consensus 263 ~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 341 (409)
T PRK07590 263 VPKELKGKTSDGEGVSLNSLWNRRQ-STKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYG 341 (409)
T ss_pred cCHHHhhhccccchhhhHHHHHHHH-hhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceec
Confidence 999888732 11111 0011 2233444444344432 2234455667788999999999998755543
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
|. +|.++|+++++.....++.+.+
T Consensus 342 ~~-------------------g~~f~wi~~~~~~~~~~~~~~l 365 (409)
T PRK07590 342 GV-------------------NAPYIWVKTPDGMSSWDFFDKL 365 (409)
T ss_pred CC-------------------cceEEEEECCCCCCHHHHHHHH
Confidence 33 5789999997433345555554
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=206.22 Aligned_cols=271 Identities=18% Similarity=0.214 Sum_probs=183.0
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++++.++.++ +++||+|++++++|++....+...... .|.+++.++.+ |++++++++ ++++++|+++++
T Consensus 92 ~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~i~~~ 169 (401)
T PRK10874 92 ESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQ-TGAKVVKLPLGADRLPDVDLLPELI-TPRTRILALGQM 169 (401)
T ss_pred HHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHH-hCCEEEEEecCCCCcCCHHHHHHhc-CcCcEEEEEeCC
Confidence 4677777776 479999999999999866555444444 78888887653 789999999 889999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ .+..+....++|++++|+||++|++| .|+++.++++++.+.++.
T Consensus 170 ~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~ 246 (401)
T PRK10874 170 SNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTG---IGVLYGKSELLEAMSPWQ 246 (401)
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCc---cEEEEEchHHHhcCCCee
Confidence 9999999999999999999999999999983 33334445589999999999887665 499999988887765432
Q ss_pred hh-----------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCC
Q 020548 151 QG-----------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKL-GLKVLYPGLE 207 (324)
Q Consensus 151 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~ 207 (324)
.+ ...+..+++.......+...+.. .....++..+.++++.+.|+++ +..+..+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~-- 324 (401)
T PRK10874 247 GGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ-- 324 (401)
T ss_pred cCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC--
Confidence 10 01111223332211111111222 2233444567788889999887 44443222
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
.+++++|.+++. ....+.+.|.. .|+ .++.|..++ . .....+|.
T Consensus 325 -----------------~~~i~~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~~~------~--------~~~~~~g~ 368 (401)
T PRK10874 325 -----------------DSSLLAFDFAGV-HHSDLVTLLAE---YGI-ALRAGQHCA------Q--------PLLAALGV 368 (401)
T ss_pred -----------------CCcEEEEEECCc-CHHHHHHHHHH---CCc-EEeccccch------H--------HHHHHhCC
Confidence 345888888742 23455555543 233 333332211 0 11112233
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
.+.||+|++ ..+++++++.+.++|+.+.
T Consensus 369 -~~~iRiS~~-~~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 369 -TGTLRASFA-PYNTQSDVDALVNAVDRAL 396 (401)
T ss_pred -CCEEEEEec-ccCCHHHHHHHHHHHHHHH
Confidence 378999999 9999999999999887664
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=206.92 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=185.1
Q ss_pred chHHHHHHH----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQ----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|++.++.+ .+++||+|++++++|++....+.....+ .|+++..++.+ |++++++++ ++++++|+++++
T Consensus 96 ~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~l~~~ 173 (406)
T PRK09295 96 EGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPALF-DERTRLLAITHV 173 (406)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCCCCCCHHHHHHhc-CCCcEEEEEecc
Confidence 456666665 4689999999999999876666544444 68888887653 789999999 788999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+.. ..+..+.++|++++|+||++|++| .|+++.++++.+.+.+..
T Consensus 174 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~ 250 (406)
T PRK09295 174 SNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVKEALLQEMPPWE 250 (406)
T ss_pred hhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCC---cEEEEEchHhHhhCCCcc
Confidence 999999999999999999999999999998322 223334589999999999887665 499998888877654321
Q ss_pred hhh------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCC
Q 020548 151 QGA------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGL 206 (324)
Q Consensus 151 ~~~------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~ 206 (324)
.+. .++..+++.......+...++ .++...++..+.++++.+.|++.+ .++..|.
T Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~- 329 (406)
T PRK09295 251 GGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ- 329 (406)
T ss_pred cCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-
Confidence 110 112223333322222222222 233444556778888899988874 3554442
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
.++++++|.++.. ....+...|.. .|+ .++.|..++.. ....++
T Consensus 330 -----------------~~~~iv~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~c~~~--------------~~~~~~ 373 (406)
T PRK09295 330 -----------------NRLGVIAFNLGKH-HAYDVGSFLDN---YGI-AVRTGHHCAMP--------------LMAYYN 373 (406)
T ss_pred -----------------CCceEEEEEECCc-CHHHHHHHHHh---CCe-EEeccccchHH--------------HHHHHC
Confidence 1356889988732 22334444442 332 44444332210 011223
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
. ++.+|+|++ ..+++++++.|.++|+.+.+
T Consensus 374 ~-~~~iRiS~~-~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 V-PAMCRASLA-MYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred C-CCEEEEEcc-CCCCHHHHHHHHHHHHHHHH
Confidence 3 368999999 99999999999999988753
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=203.43 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=154.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+||..++++++++||+|++++|+|..+...++ . .|+++.+++.+ |++++++++ ++++++|++++|+||
T Consensus 107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~----~-~g~~v~~v~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NP 180 (394)
T PRK06836 107 GALNVALKAILNPGDEVIVFAPYFVEYRFYVD----N-HGGKLVVVPTDTDTFQPDLDALEAAI-TPKTKAVIINSPNNP 180 (394)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH----H-cCCEEEEEecCCccCcCCHHHHHhhc-CcCceEEEEeCCCCC
Confidence 57888888899999999999999999887764 3 68888887653 689999999 788999999999999
Q ss_pred cccccC---hHHHHHHHHh------cCCEEEEcCCCCcCCCCc------c-CCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 76 TLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP------A-RLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~------~~~~~ivD~~~~~~~~~~------~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||.+.+ +++|+++|++ +|+++|+|++|..+..+. . ..+.+++++|+||.|+.||.|+ ||++++
T Consensus 181 tG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRi-G~~~~~ 259 (394)
T PRK06836 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERI-GYIAVN 259 (394)
T ss_pred CCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceee-EEEecC
Confidence 999986 5677788888 899999999997664321 1 1256899999999999899997 999998
Q ss_pred hhHHHH---HHHhhhhhhhc----cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 140 ANLVNS---MMDLHQGALML----LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 140 ~~~~~~---l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
+++.+. +..... .... ..+.+.+..+...+.. ....+++.++++.+.+.|++++..+..|.
T Consensus 260 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~r~~l~~~L~~~g~~~~~~~------- 327 (394)
T PRK06836 260 PEMEDADDLVAALVF-ANRILGFVNAPALMQRVVAKCLDA----TVDVSIYKRNRDLLYDGLTELGFECVKPQ------- 327 (394)
T ss_pred HHHhhhHHHHHHHHH-HhhccccccCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHhCCCEeecCC-------
Confidence 765432 111111 0001 1222223333333322 12345678888999999998876555444
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|.++|+.++. .+..++.+.+..
T Consensus 328 ------------gg~~~~~~~~~-~~~~~~~~~l~~ 350 (394)
T PRK06836 328 ------------GAFYLFPKSPE-EDDVAFCEKAKK 350 (394)
T ss_pred ------------ceEEEEEeCCC-CCHHHHHHHHHh
Confidence 57788888864 234556666553
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=200.12 Aligned_cols=209 Identities=18% Similarity=0.148 Sum_probs=156.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+++..+... +.+| +|++++|+|..+...++ ..|.++..++ |++++++.+ + +++++++++|+||||.+.+
T Consensus 75 ~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~-----~~g~~~~~~~--d~~~l~~~~-~-~~~~v~i~~p~NPtG~~~~ 143 (330)
T TIGR01140 75 EAIYLLPRL-LAPG-RVLVLAPTYSEYARAWR-----AAGHEVVELP--DLDRLPAAL-E-ELDVLVLCNPNNPTGRLIP 143 (330)
T ss_pred HHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHH-----HcCCEEEEeC--CHHHHHhhc-c-cCCEEEEeCCCCCCCCCCC
Confidence 456665544 6777 79999999999988874 3788888887 899999988 4 5789999999999999998
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--c----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLSP--A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
+++|+++|+++|+++|+|++|..+.... . ..+.+++++|+||++|++|.|+ ||+++++++++.+......
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~l~~~~~~ 222 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRL-GFVVAHPALLARLREALGP 222 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhh-hheeCCHHHHHHHHhcCCC
Confidence 6677888899999999999996554321 1 1257799999999999899997 9999999999888876541
Q ss_pred hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
...+.+.+.++..++....+.....++++++++.+.+.|++++. ++ .|. .|.++|+
T Consensus 223 ---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~-------------------~~~f~~~ 279 (330)
T TIGR01140 223 ---WTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEV-VGG-------------------TALFLLV 279 (330)
T ss_pred ---CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceE-CCC-------------------CCeEEEE
Confidence 22233444444444443334455567779999999999999874 33 233 5778899
Q ss_pred EeCCHHHHHHHHHHhhc
Q 020548 232 DMETEEKANRLMNYLQN 248 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~ 248 (324)
.+++ ...+.+.+..
T Consensus 280 ~~~~---~~~l~~~l~~ 293 (330)
T TIGR01140 280 RTPD---AAALHEALAR 293 (330)
T ss_pred EcCC---HHHHHHHHHH
Confidence 8874 3456666664
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=205.10 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=146.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce-----------eEEEecCCCHHHHHHhh-hcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-----------TTTFVDISDHEMVNSAI-VQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~-----------~~~~~~~~d~~~l~~~l-~~~~~~~v~~ 69 (324)
+|+..+ ..++.+||+|++++|+|+.+...++ ..|. ++.+++.+.-+.+...+ ...++++|++
T Consensus 106 ~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l 179 (402)
T TIGR03542 106 CDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNV-----MAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYL 179 (402)
T ss_pred HHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH-----HcCCccccccccccceEEEeecchhhCCCCCccccCCceEEEE
Confidence 466664 4567899999999999999998874 2566 77776543111111111 1257899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---c---CC----CCcEEEeCCccccccCCCeeEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A---RL----GADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~---~~----~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
++||||||.+++ +++|+++|+++|+++|+||+|..+..+. . .. +..++++|+||.||.||+|+ ||+
T Consensus 180 ~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRi-G~~ 258 (402)
T TIGR03542 180 CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRL-GWT 258 (402)
T ss_pred eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcce-EEE
Confidence 999999999987 7788999999999999999997664321 1 11 34688999999999999997 999
Q ss_pred EcChhHH--------HHHHHhhhhhhhc-cCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 137 CGPANLV--------NSMMDLHQGALML-LGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 137 ~~~~~~~--------~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+++++++ +.+..... ... +.+.+.+.++..++... ......++.+.++++.+.+.|++.+..+..|.
T Consensus 259 i~~~~l~~~~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 336 (402)
T TIGR03542 259 VVPKELTYADGHSVIQDWERRQC--TKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVYGGE 336 (402)
T ss_pred EecHHHhhcchhhHHHHHHHHhh--hcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceecCCC
Confidence 9998876 22211111 012 22334444433344332 22444456678889999999998765543232
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+|+++|++++...+...+.+.+.
T Consensus 337 -------------------~~~f~~v~l~~~~~~~~l~~~l~ 359 (402)
T TIGR03542 337 -------------------HAPYLWVKTPEGISSWDFFDFLL 359 (402)
T ss_pred -------------------ceeEEEEECCCCCCHHHHHHHHH
Confidence 57799999975333445655543
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=204.95 Aligned_cols=217 Identities=20% Similarity=0.262 Sum_probs=161.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcC------CceEE
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQG------RTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~------~~~~v 67 (324)
+++..++..+ .++||+|++++|+|+.+...++ ..|.++..++. .|+++|++.+ ++ ++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v 152 (363)
T PF00155_consen 79 AALFLLLRLLKINPGDTVLVPDPCYPSYIEAAR-----LLGAEVIPVPLDSENDFHLDPEALEEAL-DELPSKGPRPKAV 152 (363)
T ss_dssp HHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHH-----HTTSEEEEEEEEETTTTEETHHHHHHHH-HTSHTTTETEEEE
T ss_pred cchhhhhhcccccccccceecCCcccccccccc-----ccCceeeecccccccccccccccccccc-cccccccccccee
Confidence 3556666666 6799999999999999999884 36777777772 3899999998 44 67899
Q ss_pred EEecCCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCCcc---------CCC-CcEEEeCCccccccCCCeeEE
Q 020548 68 YFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSPA---------RLG-ADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~~~---------~~~-~d~~~~S~sK~~~~~g~r~~G 134 (324)
++++|+||||.+.+.+ +|+++|+++|+++|+||+|..+..... +.+ ..+++.|+||.||.+|.|+ |
T Consensus 153 ~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv-G 231 (363)
T PF00155_consen 153 LICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRV-G 231 (363)
T ss_dssp EEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTE-E
T ss_pred eecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccc-c
Confidence 9999999999998755 555559999999999999976654311 112 4699999999999999997 9
Q ss_pred EEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 135 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
|+++++++.+.++..... ...+++.+..+..++.... ++....+++.++++.+.+.|++.+..+..|.
T Consensus 232 ~i~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~----- 303 (363)
T PF00155_consen 232 YIVAPPELIERLRRFQRS---GLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPE----- 303 (363)
T ss_dssp EEEEEHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHS-----
T ss_pred cccchhhhhhhhhhcccc---ccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeecc-----
Confidence 999999999999877652 2223333333333333322 4556777789999999999999877666443
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.++|..++.. +...+.+.|..
T Consensus 304 --------------~~~~~~~~~~~~-~~~~l~~~L~~ 326 (363)
T PF00155_consen 304 --------------AGFFLWVRLDPN-DAEELAQELLE 326 (363)
T ss_dssp --------------BSSEEEEEESHH-HHHHHHHHHHH
T ss_pred --------------CccEEEEEcccc-hHHHHHHHHHH
Confidence 567778888743 56667777664
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=200.52 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=149.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
++|..+. .++++|| |+++.|+|+.+...++ ..|.++..++.++ + .+ ...++++++++||||||.+.+
T Consensus 82 e~i~~l~-~~~~~g~-v~v~~P~y~~y~~~~~-----~~g~~~~~v~~~~-~----~~-~~~~~~v~l~nPnNPTG~~~s 148 (339)
T PRK06959 82 AAIRALP-ALLPRGR-VGIAPLAYSEYAPAFA-----RHGHRVVPLDEAA-D----TL-PAALTHLIVVNPNNPTAERLP 148 (339)
T ss_pred HHHHHHH-HhcCCCe-EEEcCCCcHHHHHHHH-----HCCCEEEeecccc-h----hc-cccCCEEEEeCCCCCCCCCCC
Confidence 4566554 4577877 8899999999998884 3788888877544 2 23 345689999999999999988
Q ss_pred hHHHHHH---HHhcCCEEEEcCCCCcCCCCc--c---CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 IPELSRL---AHDKGVTVVVDNTFSPLVLSP--A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 ~~~i~~l---~~~~~~~~ivD~~~~~~~~~~--~---~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
.+++.++ |++++.++|+||+|..+...+ . +....++++||||.||.+|+|+ ||+++++++++.+......
T Consensus 149 ~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRi-Gy~v~~~~li~~l~~~~~~- 226 (339)
T PRK06959 149 AARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRA-GFVLAAPALLAALRDALGA- 226 (339)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchhe-EEEecCHHHHHHHHHhcCC-
Confidence 6666555 567899999999997664211 1 2245699999999999999997 9999999999999887652
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
+..+.+.+.++..++..........+++.++++++.+.|++.+..+. + .+.++|+.+
T Consensus 227 --~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~--------------------~~~f~~~~~ 283 (339)
T PRK06959 227 --WTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHGFAVH-A--------------------TPLFSWTDD 283 (339)
T ss_pred --CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc-C--------------------cceEEEEeC
Confidence 23344555555555554444555667778899999999999875432 1 255778887
Q ss_pred CCHHHHHHHHHHhhc
Q 020548 234 ETEEKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~~~~~~~~~~l~~ 248 (324)
++ ...+.+.+..
T Consensus 284 ~~---~~~l~~~l~~ 295 (339)
T PRK06959 284 PR---AAALHAALAR 295 (339)
T ss_pred CC---HHHHHHHHHh
Confidence 53 3456666664
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=200.87 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=146.5
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++..++ ++||.|+++.|+|+.+...+. ..|.++..++.+ +++..+..+ .++++|++++|||
T Consensus 94 ~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~~~d~~~~~~--~~~k~v~i~nP~N 166 (374)
T PRK05839 94 EVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI-----ASRAKVLLMPLTKENDFTPSLNEKEL--QEVDLVILNSPNN 166 (374)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH-----hcCCEEEEeecccccCCcCCcchhhh--ccccEEEEeCCCC
Confidence 46666667654 579999999999999998873 378888887653 122212223 4689999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----c-c---------CCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-A---------RLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~---------~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+..+ . . ..+..++++|+||.|+.+|.|+ ||++
T Consensus 167 PTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~ii 245 (374)
T PRK05839 167 PTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRS-GFIA 245 (374)
T ss_pred CcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcccee-EEEe
Confidence 9999976 567788899999999999999665321 1 1 1246799999999999999997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+.+...... ...+.+.+.+.++...+....+++...+++.++++.+.+.| +.. .|.
T Consensus 246 ~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~------------ 307 (374)
T PRK05839 246 GDASILKKYKAYRTY-LGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL---GIT--IPP------------ 307 (374)
T ss_pred cCHHHHHHHHHHHhh-cCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc---CCC--CCC------------
Confidence 999999988776541 11233444454444344443445556666777777776655 222 333
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++|+++++. .++.+++
T Consensus 308 -------gg~fi~~~~~~~---~~~~~~l 326 (374)
T PRK05839 308 -------ATFYVWLPVDND---EEFTKKL 326 (374)
T ss_pred -------eeEEEEEeCCCh---HHHHHHH
Confidence 688999999742 3455554
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=203.06 Aligned_cols=272 Identities=19% Similarity=0.175 Sum_probs=183.0
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|++.++.++ +++||+|++++++|++....+...... .|.+++.++.+ |++++++++ ++++++|+++++
T Consensus 89 ~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~ 166 (398)
T TIGR03392 89 ESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQ-TGAKVVKLPIGADLLPDIRQLPELL-TPRTRILALGQM 166 (398)
T ss_pred HHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEECc
Confidence 4677788776 478999999999998865545433334 78888887653 789999999 888999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ .+..+....++|++++|+||.+|++| + |+++.++++++.+.++.
T Consensus 167 ~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~ 243 (398)
T TIGR03392 167 SNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTG--I-GVLYGKTELLEAMPPWQ 243 (398)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCc--e-EEEEEcHHHHhhCCCee
Confidence 9999999999999999999999999999983 22233334579999999999887665 4 99999988887765432
Q ss_pred hhh-----------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCC
Q 020548 151 QGA-----------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLE 207 (324)
Q Consensus 151 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~ 207 (324)
.+. ..+..+++.......+...++ .+....++..+.++++.+.|++.+ ..+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~-- 321 (398)
T TIGR03392 244 GGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP-- 321 (398)
T ss_pred cCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--
Confidence 110 011222333211111111111 233344555778888888888763 3433221
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
.+++++|.+++. ....+.+.|.. .|+ .++.|..++. .....+|.
T Consensus 322 -----------------~~~i~~~~~~~~-~~~~l~~~L~~---~gI-~v~~g~~~~~--------------~~~~~~g~ 365 (398)
T TIGR03392 322 -----------------GSSLLAFDFAGV-HHSDLAALLAE---SGI-ALRAGQHCAQ--------------PLMAALGV 365 (398)
T ss_pred -----------------CCcEEEEEeCCc-CHHHHHHHHHh---CCE-EEecCccchH--------------HHHHHhCC
Confidence 245888888642 23456666553 333 3344432211 01112232
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.||+|++ ..+++++++.+.++|+.+.+
T Consensus 366 -~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 366 -SGTLRASFA-PYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred -CCEEEEEee-ccCCHHHHHHHHHHHHHHHH
Confidence 378999999 89999999999999877643
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=203.61 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=135.8
Q ss_pred chHHHHH---HHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C----CHHHHHHhhhc--CCceEEEE
Q 020548 2 SAISSVL---MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S----DHEMVNSAIVQ--GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~---~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~--~~~~~v~~ 69 (324)
+|+..++ .++++|||+|++++|+|+.+...++ ..|.++..++. + |++.+++++++ ++++++++
T Consensus 108 ~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~ 182 (404)
T PTZ00376 108 GALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK-----SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLH 182 (404)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEe
Confidence 3555554 3678999999999999999998884 36778777765 2 78999998842 34677888
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------c----CCCCcEEEeCCccccccCCCeeEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--------A----RLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~----~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++||||||.+.+ +++|+++|++||+++|+||+|..+.++. . ..+..++++|+||.|+++|+|+ |
T Consensus 183 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRv-G 261 (404)
T PTZ00376 183 ACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERI-G 261 (404)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccccc-c
Confidence 999999999975 5677888999999999999997665431 0 1135799999999999999997 9
Q ss_pred EE---EcChhHHHHHHH----hhhhhhhccC-CCCCHHHHHHHhcCcc-------cHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 135 AV---CGPANLVNSMMD----LHQGALMLLG-PTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 135 ~i---~~~~~~~~~l~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
|+ ++++++.+.+.. ... . ...+ +.+.+..+..++.... .+....+++.++++.+.+.|++.+.
T Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 339 (404)
T PTZ00376 262 ALHIVCANKEEAANVLSQLKLIIR-P-MYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGS 339 (404)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98 578876554432 222 1 1222 2334444444444321 1223345678999999999998753
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=206.21 Aligned_cols=135 Identities=12% Similarity=0.224 Sum_probs=106.9
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++++ +++|||+|++++|+|+.+....... . .+.++..++. .|++++++++ ++++|+|++
T Consensus 172 ~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~--g-~~~~~v~v~~~~~~~f~~d~~~l~~~~-~~~tkai~l 247 (527)
T PRK09275 172 AAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP--R-YDLEVVHINADEENEWQYPDSELEKLR-DPSIKALFL 247 (527)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc--C-CCeEEEEeecCcccCCCCCHHHHHhhc-CCCCCEEEE
Confidence 466767665 6899999999999999998876311 1 3455555542 2678999988 889999999
Q ss_pred ecCCCCcccccC---hHHHHHHHHh--cCCEEEEcCCCCcCCCCc---cC--CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHD--KGVTVVVDNTFSPLVLSP---AR--LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~--~~~~~ivD~~~~~~~~~~---~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
++|+||||.+.+ +++|+++|++ ++++||+||+|..+.... .. .+..+++.|+||.|+++|+|+ ||++++
T Consensus 248 ~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl-G~i~~~ 326 (527)
T PRK09275 248 VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL-GVIALH 326 (527)
T ss_pred eCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH-hhhhcC
Confidence 999999999986 6778888854 599999999996664321 11 147899999999999999998 999998
Q ss_pred hh
Q 020548 140 AN 141 (324)
Q Consensus 140 ~~ 141 (324)
++
T Consensus 327 ~~ 328 (527)
T PRK09275 327 ED 328 (527)
T ss_pred ch
Confidence 76
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=199.58 Aligned_cols=208 Identities=17% Similarity=0.211 Sum_probs=152.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC---HHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD---HEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d---~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+||..++.++ |+|++++|+|+.+...++ ..|.++..++.++ ++.. .+ .+++++++++||||||.
T Consensus 87 ~~i~~~~~~~----d~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~--~~--~~~~~i~i~nP~NPTG~ 153 (335)
T PRK14808 87 EIIYVMMLMF----DRSVFFPPTYSCYRIFAK-----AVGAKFLEVPLTKDLRIPEV--NV--GEGDVVFIPNPNNPTGH 153 (335)
T ss_pred HHHHHHHHHh----CcEEECCCCHHHHHHHHH-----HcCCeEEEecCCCcCCCChh--Hc--cCCCEEEEeCCCCCCCC
Confidence 5677777765 789999999999999884 3788888887641 1111 12 35689999999999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+.+.+++.+++ ++++++|+||+|..|.... . .....++++|+||.|+.+|+|+ ||+++++++++.+......
T Consensus 154 ~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRv-G~~v~~~~~~~~l~~~~~~- 230 (335)
T PRK14808 154 VFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRI-GYVVSSEKFIDAYNRVRLP- 230 (335)
T ss_pred CcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccce-EEEEeCHHHHHHHHHhcCC-
Confidence 99999999998 5799999999996663211 1 2256899999999999899997 9999999999999776541
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
...+.+.+.++..++.......+..+.+.++++.+.+.|++.+..+. |. .|+++|+.+
T Consensus 231 --~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~-------------------~g~f~~~~l 288 (335)
T PRK14808 231 --FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRIT-DS-------------------RGNFVFIFM 288 (335)
T ss_pred --CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC-CC-------------------CCeEEEEeC
Confidence 33344555555445544344555666677788999999998876544 32 477999998
Q ss_pred CCHHHHHHHHHHhhc
Q 020548 234 ETEEKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~~~~~~~~~~l~~ 248 (324)
+.. +...+.+.+..
T Consensus 289 ~~~-~~~~~~~~l~~ 302 (335)
T PRK14808 289 EKE-EKERLLEHLRA 302 (335)
T ss_pred CCc-cHHHHHHHHHH
Confidence 742 23566666664
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=194.81 Aligned_cols=247 Identities=17% Similarity=0.208 Sum_probs=165.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+||..+++ +++ +.+++..|+|..+...++ ..|.++..++.+ |++ .+ +++++++++++|+|||
T Consensus 86 ~al~~~~~--l~~-~~viv~~P~y~~~~~~~~-----~~G~~i~~v~~~~~~~~d~~----~l-~~~~~~i~l~np~NPT 152 (349)
T PRK07908 86 EGFALLAR--LRP-RRAAVVHPSFTEPEAALR-----AAGIPVHRVVLDPPFRLDPA----AV-PDDADLVVIGNPTNPT 152 (349)
T ss_pred HHHHHHHh--cCC-CeEEEeCCCChHHHHHHH-----HcCCEEEeeccCcccCcChh----Hh-ccCCCEEEEcCCCCCC
Confidence 46776666 566 456778999999887773 368888777654 333 34 5678999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCC---c---cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLS---P---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~---~---~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.+++.++|.++|++ +.++|+||+|..+... + .+.+..++++|+||.++++|.|+ ||+++++++++.+....
T Consensus 153 G~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~ 230 (349)
T PRK07908 153 SVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRV-GYALGAPDVLARLTRGR 230 (349)
T ss_pred CCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCcccee-eeeecCHHHHHHHHhcC
Confidence 999999999999975 7889999999654321 1 12245788999999999899997 99999999999988765
Q ss_pred hhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 151 QGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.. ...+.+.+.++..++.. ..++....+++.++++.+.+.|++.+..+..|. .|++
T Consensus 231 ~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-------------------~g~~ 288 (349)
T PRK07908 231 AH---WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVDPA-------------------AAPF 288 (349)
T ss_pred CC---CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCC-------------------CceE
Confidence 41 11222222222223321 233455666778999999999998865555444 5889
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+|+.+++ ...+.+.+.. .|+ .+ .|+..+. +..++++|+|++ .. +.++.
T Consensus 289 ~~~~~~~---~~~~~~~l~~---~gI-~v----------~~g~~f~-----------~~~~~~vRis~~-~~---~~~~~ 336 (349)
T PRK07908 289 VLVRVPD---AELLRKRLRE---RGI-AV----------RRGDTFP-----------GLDPDYLRLAVR-PR---AEVPV 336 (349)
T ss_pred EEEECCc---HHHHHHHHHh---CCE-EE----------EECCCCC-----------CCCCCeEEEEeC-CC---ccHHH
Confidence 9999975 2345555543 232 22 2222110 223589999999 42 23455
Q ss_pred HHHHHHhhh
Q 020548 309 FEKALSRMQ 317 (324)
Q Consensus 309 l~~~l~~~~ 317 (324)
|.++|+.+.
T Consensus 337 l~~al~~~~ 345 (349)
T PRK07908 337 LVQALAEIL 345 (349)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=203.19 Aligned_cols=279 Identities=19% Similarity=0.226 Sum_probs=187.0
Q ss_pred chHHHHHHH----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQ----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|++.++.+ .+++||+|++++++|++....++..... .|.++..++.+ |++++++.+ ++++++|+++++
T Consensus 105 ~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~ 182 (424)
T PLN02855 105 EAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQK-TGAVLKFVGLTPDEVLDVEQLKELL-SEKTKLVATHHV 182 (424)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHH-cCCEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEeCc
Confidence 356666665 3689999999999999877666555444 68888887653 789999999 789999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ + ...+..+.++|++++|+||++|++| .|+++.++++++.+.++.
T Consensus 183 ~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~p~~ 259 (424)
T PLN02855 183 SNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTG---IGFLWGKSDLLESMPPFL 259 (424)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCc---cEEEEEchhhhhcCCCEe
Confidence 9999999999999999999999999999982 2 2233345578999999999876655 499998888877765432
Q ss_pred hhh-----------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCC
Q 020548 151 QGA-----------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLE 207 (324)
Q Consensus 151 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~ 207 (324)
.+. ..+..+++.....+.+...++ .++...++..+.++++.+.|++.+ .++..|.-
T Consensus 260 ~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~- 338 (424)
T PLN02855 260 GGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKP- 338 (424)
T ss_pred cCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-
Confidence 110 011122222222211111122 244445556788888999998873 45554421
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
..+ ..+++++.|.+++. ....+.+.|.. ++|+ .++.|..++. .. ....|.
T Consensus 339 ~~~------------~~r~~~v~~~~~~~-~~~~v~~~L~~--~~gI-~v~~g~~c~~------~~--------~~~~g~ 388 (424)
T PLN02855 339 SEG------------VGRAALCAFNVEGI-HPTDLSTFLDQ--QHGV-AIRSGHHCAQ------PL--------HRYLGV 388 (424)
T ss_pred ccc------------cCcccEEEEEECCc-CHHHHHHHhcc--cCCE-EEechhhhhH------HH--------HHHhCC
Confidence 000 02467899998742 24456666653 1233 3344433221 00 112343
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.+|+|++ ..+++++++.|.++|+.+.+
T Consensus 389 -~~~iRiS~~-~ynt~~di~~l~~~l~~~~~ 417 (424)
T PLN02855 389 -NASARASLY-FYNTKEEVDAFIHALKDTIA 417 (424)
T ss_pred -CCeEEEEec-cCCCHHHHHHHHHHHHHHHH
Confidence 378999999 99999999999998877653
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=201.48 Aligned_cols=196 Identities=12% Similarity=0.082 Sum_probs=147.6
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc-----CCceEEE
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ-----GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-----~~~~~v~ 68 (324)
+|+..++++++ +|||+|++++|+|+.+...++ ..|.++..++. .|++++++++.. .++++++
T Consensus 141 ~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~ 215 (407)
T PLN02368 141 KGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS-----LLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMV 215 (407)
T ss_pred HHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 47788888887 799999999999999998884 36777766653 278999998831 1789999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc--------C-------CCCcEEEeCCcccc-c
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA--------R-------LGADVVVHSISKFI-S 126 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~--------~-------~~~d~~~~S~sK~~-~ 126 (324)
+++||||||.+.+ +++|+++|+++|++||+||+|..+.++ +. . .+..++++|+||.| +
T Consensus 216 l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~ 295 (407)
T PLN02368 216 IINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWG 295 (407)
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCccccc
Confidence 9999999999976 567788899999999999999665431 11 1 12579999999998 7
Q ss_pred cCCCeeEEEEE---cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----c----H---HHHHHHHHHHHHHHHH
Q 020548 127 GGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----H----L---GLRMKEHCHRALIFAR 192 (324)
Q Consensus 127 ~~g~r~~G~i~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~---~~~~~~~~~~~~~l~~ 192 (324)
++|+|+ ||++ +++++++.+..... ...+.+.+.+.++..++.... . . ....+.++++++.+.+
T Consensus 296 ~~GlRi-Gy~i~~~~~~~li~~~~~~~~--~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~ 372 (407)
T PLN02368 296 ECGQRG-GYFEMTNIPPKTVEEIYKVAS--IALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTD 372 (407)
T ss_pred CCccce-EEEEEeCCCHHHHHHHHHHhc--ccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899997 9998 58889998887643 123445566666655554321 1 2 2345677999999999
Q ss_pred HHHhC-CCceeCCC
Q 020548 193 RMKKL-GLKVLYPG 205 (324)
Q Consensus 193 ~L~~~-~~~~~~p~ 205 (324)
.|++. +..+..|.
T Consensus 373 ~L~~~~g~~~~~P~ 386 (407)
T PLN02368 373 GFNSCKNVVCNFTE 386 (407)
T ss_pred HHhCCCCeEeCCCC
Confidence 99997 44565565
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=201.43 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=106.6
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++.+ +++|||+|++++|+|+.+....... . .|.+++.++. .|.++++++. ++++
T Consensus 166 ~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~--~-~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~-~~~~ 241 (521)
T TIGR03801 166 AAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP--R-YDFEVVRIKADEMTEDGTHTWQYPDKELEKLR-DPSI 241 (521)
T ss_pred HHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh--c-CCcEEEEeecccccccccccCCCCHHHHHHhc-CCCC
Confidence 466666665 7899999999999999999876321 1 3566555543 2568888877 7899
Q ss_pred eEEEEecCCCCcccccC---hHHHHHHHHhc--CCEEEEcCCCCcCCCCc---cCC--CCcEEEeCCccccccCCCeeEE
Q 020548 65 KVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSP---ARL--GADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~--~~~~ivD~~~~~~~~~~---~~~--~~d~~~~S~sK~~~~~g~r~~G 134 (324)
|++++++|+||||.+.+ +++|+++|+++ +++||+||+|..+.... ... +..+++.|+||.|+++|+|+ |
T Consensus 242 kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~Rl-G 320 (521)
T TIGR03801 242 KALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRL-G 320 (521)
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhh-h
Confidence 99999999999999986 66778889886 89999999997664321 111 46799999999999999998 9
Q ss_pred EEEcChh
Q 020548 135 AVCGPAN 141 (324)
Q Consensus 135 ~i~~~~~ 141 (324)
|++.+++
T Consensus 321 ~i~~~~~ 327 (521)
T TIGR03801 321 TIALHKD 327 (521)
T ss_pred hhhcCch
Confidence 9988764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=196.04 Aligned_cols=221 Identities=15% Similarity=0.178 Sum_probs=153.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc------CCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~------~~~~~v~ 68 (324)
+|+..++.+++++||+|+++.+.|.+....+ +..|.++..++.+ |++++++++.. +++++|+
T Consensus 77 ~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~-----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~ 151 (370)
T TIGR02539 77 EGKFAVMHALCKEGDWVVLDGLAHYTSYVAA-----ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLAL 151 (370)
T ss_pred HHHHHHHHHhhCCCCEEEECCcccHHHHHHH-----HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEE
Confidence 4678888999999999999999977766554 2368888877764 89999998832 3688999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
+++|+||+|...|+++|.++|+++|+++++|++|+.. ..+....++|++++|+||++++ ++++ ||+++++++++.+
T Consensus 152 ~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~-~g~~-G~l~~~~~~i~~l 229 (370)
T TIGR02539 152 LTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAA-SGPC-GVLGMSEEWEDIV 229 (370)
T ss_pred EECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccC-CCCE-EEEEECHHHHhhh
Confidence 9999999999999999999999999999999999432 2233345789999999999985 6676 9999999999988
Q ss_pred HHhhhhhhh----ccCCCC---CHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCcee--CCCCCCCchhHHHHH
Q 020548 147 MDLHQGALM----LLGPTM---NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL--YPGLEDHPHHELLKS 217 (324)
Q Consensus 147 ~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~p~~~~~~~~~~~~~ 217 (324)
.....++.. ..+.+. ....+...+..........++..++++++.+.|++.|+++. .|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~~~~~~s------------ 297 (370)
T TIGR02539 230 LRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIGFIQLGQKPK------------ 297 (370)
T ss_pred cccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCCC------------
Confidence 765542110 111111 11111112211111112233445556789999999987653 233
Q ss_pred HhccCCCcceEEEEEeCCH--------HHHHHHHHHhhc
Q 020548 218 MANKEYGFGGLLCLDMETE--------EKANRLMNYLQN 248 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~ 248 (324)
.++++.++++.. .....+.+.|..
T Consensus 298 -------~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e 329 (370)
T TIGR02539 298 -------EHDLVKFETPGFHEIAQKHKRRGYFLYEELKK 329 (370)
T ss_pred -------cCceEEEECCchhHHhhhhccccHHHHHHHHh
Confidence 466888877531 123456677664
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=198.13 Aligned_cols=182 Identities=14% Similarity=0.160 Sum_probs=135.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++|..++..+ +||+|+++.|+|+.+...++ ..|.++..++.+ |++++++.+ ++++++++++|+|||
T Consensus 83 ~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~~--~~~~~v~~~~P~NPt 153 (337)
T PRK03967 83 ELISYLVKLF--EGKHIVITPPTFGMYSFYAK-----LNGIPVIDVPLKEDFTIDGERIAEKA--KNASAVFICSPNNPT 153 (337)
T ss_pred HHHHHHHHHh--CCCeEEEeCCChHHHHHHHH-----HcCCeEEEeecCCCCCcCHHHHHHhc--cCCCEEEEeCCCCCC
Confidence 4566665554 79999999999998876653 267887777653 678887754 578899999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.++|.++++ +++++|+||+|..+.... . .....++++|+||.|+.+|.|+ ||+++++++++.+.....
T Consensus 154 G~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRi-G~iv~~~~~i~~~~~~~~ 231 (337)
T PRK03967 154 GNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRA-GYAIANEEIIDALYRIKP 231 (337)
T ss_pred CCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhh-eeeecCHHHHHHHHhhcC
Confidence 99999999999995 699999999997664211 1 1246799999999999899997 999999999998887665
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
. ...+.+.+.++..++...++..+..+...++++.+.+.|.+.
T Consensus 232 ~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 274 (337)
T PRK03967 232 P---FSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY 274 (337)
T ss_pred C---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 222334444444444443444455556677778888888764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=201.65 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=142.8
Q ss_pred chHHHHHHHccC-CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEE
Q 020548 2 SAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~ 68 (324)
+||..++++++. +||.|+++.|+|+.+...++ ..|.++..++.+ |+++|+++++. .++++++
T Consensus 202 ~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~-----~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~iv 276 (534)
T PLN02231 202 PAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA-----LHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALV 276 (534)
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCChhHHHHHH-----HcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEE
Confidence 578889998884 79999999999999998884 256666666432 78999998832 1689999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc----C------C---C-CcEEEeCCcccc-cc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA----R------L---G-ADVVVHSISKFI-SG 127 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~----~------~---~-~d~~~~S~sK~~-~~ 127 (324)
+++|+||||.+.+ +++|+++|+++|++||+||+|..+.++ +. . . + ..++++|+||.+ +.
T Consensus 277 l~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~ 356 (534)
T PLN02231 277 VINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGE 356 (534)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccC
Confidence 9999999999975 678899999999999999999766442 10 0 0 1 358899999965 78
Q ss_pred CCCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHH-------HHHHHHHHHHHHHHHH
Q 020548 128 GADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLG-------LRMKEHCHRALIFARR 193 (324)
Q Consensus 128 ~g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~l~~~ 193 (324)
+|+|+ ||++. ++++.+.+.+... . ..+.+.+.+..+..++... ..++ ...+.+.++++.+.+.
T Consensus 357 pGlRi-Gy~~~~~~~~~l~~~l~k~~~-~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~ 433 (534)
T PLN02231 357 CGKRG-GYMEVTGFTSDVREQIYKVAS-V-NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDA 433 (534)
T ss_pred Cccce-EEEEEecCCHHHHHHHHHHHh-h-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99975 6788888876644 1 2333444444444444321 1222 2245678999999999
Q ss_pred HHhC-CCceeCCC
Q 020548 194 MKKL-GLKVLYPG 205 (324)
Q Consensus 194 L~~~-~~~~~~p~ 205 (324)
|++. +..+..|.
T Consensus 434 L~~~~gi~~~~p~ 446 (534)
T PLN02231 434 LNSLEGVTCNKAE 446 (534)
T ss_pred HhcCCCceecCCC
Confidence 9987 45665454
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=194.28 Aligned_cols=257 Identities=16% Similarity=0.148 Sum_probs=177.1
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~ 79 (324)
++..++.+++++||+|++++|+|+.+...++ ..|.++..++..|++++++.++. .++++|++++++|++|..
T Consensus 88 ~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~ 162 (360)
T TIGR00858 88 ANVGVISALVGKGDLILSDALNHASLIDGCR-----LSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDI 162 (360)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCC
Confidence 3445667778999999999999999987773 36778888877799999998843 257899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCC--Cc--------c-CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVL--SP--------A-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~--------~-~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
.++++|.++|+++|+++|+||+|+.+.. .. . ..+.+++++|+||+|+++ |||+++++++.+.+..
T Consensus 163 ~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~----gG~~~~~~~~~~~~~~ 238 (360)
T TIGR00858 163 APLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY----GAYVAGSQALIDYLIN 238 (360)
T ss_pred cCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc----CcEEEcCHHHHHHHHH
Confidence 9999999999999999999999843221 10 1 126789999999999875 4899999998888765
Q ss_pred hhhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 149 LHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
.........+..+.+..+. ..++.........+++.++++++.+.|++.+.++. |. .++
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-------------------~~~ 298 (360)
T TIGR00858 239 RARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALGFTLM-PS-------------------CTP 298 (360)
T ss_pred hCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCccC-CC-------------------CCC
Confidence 4331100111222222121 22222222334567789999999999998775443 22 467
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHH
Q 020548 228 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 307 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~ 307 (324)
++|+.++......+|.+.+.. .|+.. ..+.. +.. ...++++|+|++ ..++.++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~---~gI~v-~~~~~------~~~--------------~~~~~~iRis~~-~~~~~~~i~ 353 (360)
T TIGR00858 299 IVPVIIGDNASALALAEELQQ---QGIFV-GAIRP------PTV--------------PAGTSRLRLTLS-AAHTPGDID 353 (360)
T ss_pred EEEEEeCCHHHHHHHHHHHHH---CCeeE-eeeCC------CCC--------------CCCCceEEEEEc-CCCCHHHHH
Confidence 899999755556678777764 34311 11100 000 012368999999 877777777
Q ss_pred HHHHHH
Q 020548 308 QFEKAL 313 (324)
Q Consensus 308 ~l~~~l 313 (324)
.+.++|
T Consensus 354 ~~l~~l 359 (360)
T TIGR00858 354 RLAEAL 359 (360)
T ss_pred HHHHhh
Confidence 766655
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=187.61 Aligned_cols=268 Identities=18% Similarity=0.171 Sum_probs=196.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
.|.+|+++.-+|++....++.+ .+ .|.++.+++++ |+++|++++ +++|.+|.+...||.+|.++|+++|.++
T Consensus 90 ~~~HIIts~iEH~aVl~~~~~L-e~-~g~~Vtyl~V~~~G~v~~e~L~~al-~~~T~LVSim~aNnE~G~IQpI~ei~~i 166 (386)
T COG1104 90 KGKHIITSAIEHPAVLNTCRYL-ER-QGFEVTYLPVDSNGLVDLEQLEEAL-RPDTILVSIMHANNETGTIQPIAEIGEI 166 (386)
T ss_pred CCCeEEEcccccHHHHHHHHHH-Hh-cCCeEEEeCCCCCCeEcHHHHHHhc-CCCceEEEEEecccCeeecccHHHHHHH
Confidence 5789999999999999999755 44 69999999886 899999999 8899999999999999999999999999
Q ss_pred HHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH--HHHHHhhhhhhhccCCCCCHH
Q 020548 89 AHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV--NSMMDLHQGALMLLGPTMNPK 164 (324)
Q Consensus 89 ~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~--~~l~~~~~~~~~~~~~~~~~~ 164 (324)
|+++|+++++|.+| +....+...+++|++..|.||.+|+.| .|+++.++... ..+....+..+...|....+.
T Consensus 167 ~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~ 243 (386)
T COG1104 167 CKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPG 243 (386)
T ss_pred HHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccHHH
Confidence 99999999999998 445566667789999999999998877 68887655432 222222221233444444433
Q ss_pred HHHH--Hhc-CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCC-CCCCchhHHHHHHhccCCCcceEEEEEeCCHHHH
Q 020548 165 VAFE--LSE-RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 239 (324)
Q Consensus 165 ~~~~--~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 239 (324)
.+.. +++ ....++....+....++++.+.|.+. +.-..... .+ ...+++.|.+++ ...
T Consensus 244 Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~----------------rlP~~~~~~f~g-v~g 306 (386)
T COG1104 244 IVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEP----------------RLPNILNFSFPG-VEG 306 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCccc----------------CCCCeEEEEeCC-CcH
Confidence 3222 111 23445667777889999999999986 44222122 11 234588899985 346
Q ss_pred HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 240 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 240 ~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+.++-.|.. .| +++|.|..|+. ....++++..++|.+ .+.||||+| ..+++++++.+.+++..
T Consensus 307 E~ll~~L~~---~g-I~vStGSACsS--------~~~~pShVL~AmG~~~e~a~~siR~S~g-~~tt~eei~~~~~~l~~ 373 (386)
T COG1104 307 ESLLLALDL---AG-IAVSTGSACSS--------GSLEPSHVLRAMGISEELAHGSIRFSLG-RFTTEEEIDAAAEALKE 373 (386)
T ss_pred HHHHHhccc---cC-eEEeccccccC--------CCCCccHHHHHcCCChHHhCccEEEEcC-CCCCHHHHHHHHHHHHH
Confidence 667667764 33 47788877543 223345677788885 378999999 99999999888888776
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+-
T Consensus 374 ~i 375 (386)
T COG1104 374 II 375 (386)
T ss_pred HH
Confidence 64
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=194.85 Aligned_cols=263 Identities=13% Similarity=0.187 Sum_probs=179.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---C--CceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---G--RTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~--~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|++++|+|+++...++. .+.+...+...|++++++++.+ . ++++|++++++|||
T Consensus 109 ~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~-----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~t 183 (393)
T TIGR01822 109 DANGGLFETLLGAEDAIISDALNHASIIDGVRL-----CKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMD 183 (393)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccHHHHHHHHh-----cCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCC
Confidence 467788888899999999999999999887732 3333334445689999998832 2 78899999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC-CcCC-CC------ccC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF-SPLV-LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~~------~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|.+.|+++|+++|+++|+++|+|++| .++. .. ... .++|++++|+||++++ +| +||+++++++.+.+
T Consensus 184 G~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g--~r-~G~~~~~~~~~~~l 260 (393)
T TIGR01822 184 GVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG--AS-GGFTTARKEVVELL 260 (393)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC--CC-cEEEEeCHHHHHHH
Confidence 99999999999999999999999998 3332 11 111 2578999999999864 57 49999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
....... ..+++..+..... .+......+...+++.++++++.+.|++.++.+. +.
T Consensus 261 ~~~~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------ 319 (393)
T TIGR01822 261 RQRSRPY--LFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAAGFDIK-PA------------------ 319 (393)
T ss_pred HHhCccc--eecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC------------------
Confidence 7643211 2222222222111 2222222345567778999999999988766543 21
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.++++.+.+.+......|.+.|.. .|+ .++ +.. .|.. +.....+|+|++ ..+++
T Consensus 320 -~~~~~~i~~~~~~~~~~l~~~L~~---~gI-~v~-~~~-----~~~~--------------~~~~~~iRis~~-~~~t~ 373 (393)
T TIGR01822 320 -DHPIIPVMLYDAVLAQRFARRLLE---EGI-YVT-GFF-----YPVV--------------PKGQARIRVQIS-AAHTE 373 (393)
T ss_pred -CCCEEEEEeCCHHHHHHHHHHHHH---CCe-eEe-eeC-----CCCC--------------CCCCceEEEEEC-CCCCH
Confidence 234677777655556778877764 243 211 110 1100 111356999999 88888
Q ss_pred HHHHHHHHHHHhhhhc
Q 020548 304 QRWSQFEKALSRMQDS 319 (324)
Q Consensus 304 ~~~~~l~~~l~~~~~~ 319 (324)
++++.+.++|+.+.+.
T Consensus 374 edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 374 EQLDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777543
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=198.74 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=150.2
Q ss_pred CchHHHHHHHccC-----CCCEEEE-cCCCchhHHHHHhhhcC-cccceeEEEecC------CCHHHHHHhhhcCCceEE
Q 020548 1 MSAISSVLMQLCS-----SGGHVVA-ARTLYGGTHALLTHFFP-RACNITTTFVDI------SDHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 1 ~~ai~~~~~~~~~-----~gd~vl~-~~p~y~~~~~~~~~~~~-~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v 67 (324)
++||..+++++++ +||.|++ .+|+|+.+......... ...+..+..++. .|+++++ + .++++++
T Consensus 107 ~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~i 183 (416)
T PRK09440 107 QSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--I-DEDTGAI 183 (416)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--c-CCCceEE
Confidence 3578888888885 6899999 79999998875421100 001222222221 3677776 3 5678999
Q ss_pred EEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 68 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 68 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++++||||||.+++ +++|+++|+++++++|+||+|..+... +...+..++++|+||+ +++|+|+ ||++
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRi-G~~i 261 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRC-GIVI 261 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCcceE-EEEe
Confidence 99999999999986 668888999999999999999543211 1112567999999996 8999997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH---HH-HHHHHHHHHHHHHHHHHhC----CCceeCCCCCCC
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEHCHRALIFARRMKKL----GLKVLYPGLEDH 209 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~ 209 (324)
+++++++.+...... ...+.+.+.+.++..++...... .. ..+.+.++++.+.+.|++. +..+..|.
T Consensus 262 ~~~~l~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~---- 336 (416)
T PRK09440 262 ADEEIIEALSNMNGI-ISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPE---- 336 (416)
T ss_pred CCHHHHHHHHHHHHH-hccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCC----
Confidence 999999988876651 11233445555555555443322 12 2344677778888888764 22333343
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
+|.++|+.++. ......+.+.+.
T Consensus 337 ---------------gg~fiw~~~~~~~~~~~~~~~~l~ 360 (416)
T PRK09440 337 ---------------GAIFLWLWFKDLPITTEELYQRLK 360 (416)
T ss_pred ---------------CceEEEEECCCCCCCHHHHHHHHH
Confidence 68899999874 234456666655
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=211.33 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=142.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+++..+++++++|||+|+++.|+|+.+...++ ..|.++..++.+ |++++++++ ++ +.+++++++|+
T Consensus 765 elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~-----~~Ga~vv~Vpl~~e~gf~lD~d~Le~al-~~~~~~~I~L~nPn 838 (1082)
T PLN02672 765 ALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAK-----FLKANFRRIPTKSSDGFKLTAKTLASTL-ETVKKPWVYISGPT 838 (1082)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHh-ccCCCCEEEEECcC
Confidence 56778888999999999999999999999884 367777777653 678999988 54 45688999996
Q ss_pred -CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c-----CC------CCcEEEeCCccccccCCCe
Q 020548 74 -NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A-----RL------GADVVVHSISKFISGGADI 131 (324)
Q Consensus 74 -nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~-----~~------~~d~~~~S~sK~~~~~g~r 131 (324)
||||.+++ +++|+++|++||++||+||+|.++.++. . .. .+.++++|+||.++++|+|
T Consensus 839 hNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLR 918 (1082)
T PLN02672 839 INPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHE 918 (1082)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHH
Confidence 99999975 6688888999999999999997554321 0 00 1468999999999999999
Q ss_pred eEEEEEcCh-hHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-----Cc---ccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 132 IAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-----RI---PHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 132 ~~G~i~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
+ ||+++++ ++++.+..... . .......+..+..++. .. ..+....+.+.++++++.+.|++.+..+.
T Consensus 919 I-GylIap~~eLi~~l~~~~~-~--s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~ 994 (1082)
T PLN02672 919 F-GFLALNDSVLIDAFHSAPG-L--SRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVL 994 (1082)
T ss_pred h-eeEEeCCHHHHHHHHHhhh-h--cCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEe
Confidence 7 9999864 58888876543 1 1122223333322221 11 12344556679999999999999877665
Q ss_pred CCC
Q 020548 203 YPG 205 (324)
Q Consensus 203 ~p~ 205 (324)
.|.
T Consensus 995 ~Pe 997 (1082)
T PLN02672 995 EPQ 997 (1082)
T ss_pred cCC
Confidence 454
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=193.99 Aligned_cols=263 Identities=15% Similarity=0.163 Sum_probs=184.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||.|+++.+.|.+....+. ..|.++..++..|++++++++++.++++|++++++||||.+.|
T Consensus 125 ~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p 199 (407)
T PRK07179 125 AANVGLLQTIADPNTPVYIDFFAHMSLWEGVR-----AAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP 199 (407)
T ss_pred HHHHHHHHHhCCCCCEEEEECCcCHHHHHHHH-----HCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCcccc
Confidence 47788888999999999999999988876652 2577777777779999999993335889999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC--CC------ccC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV--LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~--~~------~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+++|.++|+++|+++|+||+|+... .. ... .++|+++.|+||++++ + +|++++++++++.+.....
T Consensus 200 l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~---~-~G~l~~~~~~~~~~~~~~~ 275 (407)
T PRK07179 200 LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG---R-AGIITCPRELAEYVPFVSY 275 (407)
T ss_pred HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc---c-CeEEEeCHHHHHHHHHhCc
Confidence 9999999999999999999994211 11 111 1458999999999975 3 4999999888877764432
Q ss_pred hhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 152 GALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.. ..++++.+..++. .+........+.+++.++++++.+.|++.++++. . .+++
T Consensus 276 ~~--~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~g~~v~--~-------------------~~~i 332 (407)
T PRK07179 276 PA--IFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSELGYNIR--S-------------------ESQI 332 (407)
T ss_pred Ce--eeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC--C-------------------CCCE
Confidence 11 1223322222221 2222233345667789999999999998865433 1 3568
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++.......+.+.+.. .|+.. +.++.|.. ....+.+|+|++ ...++++++.
T Consensus 333 ~~l~~~~~~~~~~~~~~L~~---~GI~~-------~~~~~p~~--------------~~~~~~lRis~~-~~~t~edi~~ 387 (407)
T PRK07179 333 IALETGSERNTEVLRDALEE---RNVFG-------AVFCAPAT--------------PKNRNLIRLSLN-ADLTASDLDR 387 (407)
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCceE-------eeecCCCC--------------CCCCceEEEEEC-CCCCHHHHHH
Confidence 88888754456667777664 34321 11122221 112478999999 8888888999
Q ss_pred HHHHHHhhhhcCC
Q 020548 309 FEKALSRMQDSGV 321 (324)
Q Consensus 309 l~~~l~~~~~~~~ 321 (324)
+.++|+.+.++.+
T Consensus 388 ~~~~l~~~~~~~~ 400 (407)
T PRK07179 388 VLEVCREARDEVD 400 (407)
T ss_pred HHHHHHHHHHhhC
Confidence 9998888765544
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=179.76 Aligned_cols=243 Identities=15% Similarity=0.207 Sum_probs=174.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++.+||..|+++.|+|+-|.... ...|+++++++.. |++.++.++ +++|.++++.+|+|
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a-----~~~~lEVR~ydlLPe~~weIDL~~veal~-DENT~AivviNP~N 210 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTRA-----IYSGLEVRYYDLLPEKDWEIDLDGVEALA-DENTVAIVVINPNN 210 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHhh-----hhcCceeEeecccCcccceechHHHHHhh-ccCeeEEEEeCCCC
Confidence 6899999999999999999999999988766 3378999998863 899999988 99999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC--cc----CC---CCcEEEeCCccccccCCCeeEEEEEcC---
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--PA----RL---GADVVVHSISKFISGGADIIAGAVCGP--- 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~--~~----~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~--- 139 (324)
|+|.+.+ +++|+++|+++++.+|.||+|.++.+. |. .+ -..+.++|.||-+-.||||+ ||++..
T Consensus 211 PcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRl-GWi~~hD~~ 289 (447)
T KOG0259|consen 211 PCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRL-GWIALHDPR 289 (447)
T ss_pred CCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCcee-eeEEEeccc
Confidence 9999975 789999999999999999999766432 21 11 35789999999888999998 999542
Q ss_pred -----hhHHHHHHHhhhhhhhccCCC-CCHHHHHHHhc-Cccc-HHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCC
Q 020548 140 -----ANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE-RIPH-LGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDH 209 (324)
Q Consensus 140 -----~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~ 209 (324)
...++.+....+ ...++. ..|.+.-..+. ..+. +.....-.+.+.+...++|++.+- . ...|+
T Consensus 290 gvf~~~~~~q~~~~~~~---~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPe---- 362 (447)
T KOG0259|consen 290 GVFRDTKVVQGIKNFLD---IIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPE---- 362 (447)
T ss_pred ccccchHHHHHHHHHHh---ccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCC----
Confidence 233344444433 233333 22222222232 2222 455666679999999999999864 3 22243
Q ss_pred chhHHHHHHhccCCCcceEEEEEeC-----CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHh
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDME-----TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 284 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~-----~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
+..+.++.+. +.++-..|+..|- ..+++++-|+.-+
T Consensus 363 ---------------g~mylmv~l~~s~~~~~~dD~dFc~kL~-------------~Eesv~~LPG~af----------- 403 (447)
T KOG0259|consen 363 ---------------GCMYLMVKLNLSLFPDIEDDVDFCQKLA-------------REESVICLPGQAF----------- 403 (447)
T ss_pred ---------------cceEEEeccchhhhccccccHHHHHHHh-------------hhcceEEeccccc-----------
Confidence 4556677665 2233445555544 2367777777644
Q ss_pred cCCCCCeEEEEeccCC
Q 020548 285 AGISAGLVRMSVGYLG 300 (324)
Q Consensus 285 ~~~~~~~iR~s~g~~~ 300 (324)
|. ++|+|++++ .+
T Consensus 404 -~~-~nw~Ri~i~-~~ 416 (447)
T KOG0259|consen 404 -GL-KNWLRIVIT-VE 416 (447)
T ss_pred -cC-CCeEEEEEc-cC
Confidence 33 599999999 55
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=195.22 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=144.0
Q ss_pred CchHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc--CCceEEEE
Q 020548 1 MSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYF 69 (324)
Q Consensus 1 ~~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~~v~~ 69 (324)
++|+..+++.+ ++|||+|++++|+|+.+...++ ..|.+++.++. .|++++++.+.+ .+++++++
T Consensus 104 ~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~ 178 (396)
T PRK09257 104 TGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE-----AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLH 178 (396)
T ss_pred cHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH-----HcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEe
Confidence 46788887655 5899999999999999998884 36777776653 278999888732 34566677
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----------c-CCCCcEEEeCCccccccCCCeeEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----------A-RLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----------~-~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|..+..+. . ..+..++++|+||.|+++|+|+ ||
T Consensus 179 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRi-G~ 257 (396)
T PRK09257 179 GCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERV-GA 257 (396)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccc-ee
Confidence 999999999975 6688889999999999999997665321 1 1135799999999999999997 99
Q ss_pred EE---cChhHH----HHHHHhhhhhhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC--
Q 020548 136 VC---GPANLV----NSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL-- 199 (324)
Q Consensus 136 i~---~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~-- 199 (324)
++ .+++.. ..+..... ......+.+.+..+..++... ..+....+++.++++.+.+.|++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~ 336 (396)
T PRK09257 258 LSVVAEDAEEADRVLSQLKATIR-TNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSR 336 (396)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhh-hhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 97 244433 33333222 101112233333333344332 12334566679999999999998752
Q ss_pred --ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 200 --KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 200 --~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+..|. +|.++|+.++
T Consensus 337 ~~~~~~p~-------------------gg~~~w~~l~ 354 (396)
T PRK09257 337 DFDFIARQ-------------------RGMFSYSGLT 354 (396)
T ss_pred Cccccccc-------------------ceEEEecCCC
Confidence 333333 6888888885
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=197.40 Aligned_cols=276 Identities=19% Similarity=0.230 Sum_probs=184.9
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++ +++||+|++++++|++....+...... .|.+++.++.+ |++++++.+ ++++++|+++++
T Consensus 91 ~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~l~~~i-~~~~~lv~~~~~ 168 (403)
T TIGR01979 91 ESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAER-TGATLKFIPLDDDGTLDLDDLEKLL-TEKTKLVAITHV 168 (403)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHh-cCcEEEEEecCCCCCCCHHHHHHHh-ccCCeEEEEEcc
Confidence 3566666653 578999999999999877666554444 78888887653 789999999 889999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-cC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PL-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++++|++|+ +. ..+..+.++|++++|+||++|++| .|+++.++++.+.+.+..
T Consensus 169 ~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~g~l~~~~~~~~~~~~~~ 245 (403)
T TIGR01979 169 SNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTG---IGVLYGKEELLEQMPPFL 245 (403)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCC---ceEEEEchHHHhcCCCee
Confidence 9999999999999999999999999999983 22 233345589999999999987665 499988888777664321
Q ss_pred hhh-----------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCC
Q 020548 151 QGA-----------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLE 207 (324)
Q Consensus 151 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~ 207 (324)
.+. ..+..+++.......+...++ ..+...++..+.++++.+.|++.+ .++..|.-+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~ 325 (403)
T TIGR01979 246 GGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDA 325 (403)
T ss_pred cCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc
Confidence 100 001112333222222211111 133445666888888999898874 466544311
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
. ..++++.|.+++. ....+.+.+.. .|+ .++.|..++. .....++.
T Consensus 326 ~---------------~~~~~v~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~~~~--------------~~~~~~~~ 371 (403)
T TIGR01979 326 E---------------DRGGIISFNVEGV-HPHDVGTILDE---EGI-AVRSGHHCAQ--------------PLMRRFGV 371 (403)
T ss_pred c---------------ccCceEEEEeCCc-CHHHHHHHHhh---CCE-EEcchhhhhH--------------HHHHHhCC
Confidence 0 1466888988642 23455555553 343 3333322110 00111232
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.+|+|+| ..+++++++.+.++|+.+.+
T Consensus 372 -~~~iRiS~~-~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 372 -PATCRASFY-IYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred -CCEEEEEec-cCCCHHHHHHHHHHHHHHHH
Confidence 478999999 88999999999999877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=192.50 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=147.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--C----CHHHHHHhhh---cCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--S----DHEMVNSAIV---QGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~----d~~~l~~~l~---~~~~~~v~~~~~ 72 (324)
+|+..++.++++|||+|++++|+|+.+...+.. ..|.++..++. + |++++++.++ .+..+++++++|
T Consensus 80 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~----~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P 155 (388)
T PRK08637 80 HGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNT----RRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFP 155 (388)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH----hcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCC
Confidence 578888889999999999999999999876521 15777776654 2 7899998883 245567778889
Q ss_pred CCCcccccC---hHHHHHHHHh-----cCCEEEEcCCCCcCCCCc------c----CC-CCc--EEEeCCccccccCCCe
Q 020548 73 SNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPLVLSP------A----RL-GAD--VVVHSISKFISGGADI 131 (324)
Q Consensus 73 ~nptG~~~~---~~~i~~l~~~-----~~~~~ivD~~~~~~~~~~------~----~~-~~d--~~~~S~sK~~~~~g~r 131 (324)
|||||.+.+ +++|+++|++ ++++||+||+|..+.++. . +. +.. ++++|+||.+++||.|
T Consensus 156 ~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlR 235 (388)
T PRK08637 156 NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFR 235 (388)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccc
Confidence 999999976 5566776664 899999999997664321 0 11 232 3456999999999999
Q ss_pred eEEEEEc------ChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhCC-
Q 020548 132 IAGAVCG------PANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKLG- 198 (324)
Q Consensus 132 ~~G~i~~------~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~- 198 (324)
+ ||++. ++++.+.+...... ......+.+.+.++..++...... ...+..++++++.+.+.|++.+
T Consensus 236 l-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~ 314 (388)
T PRK08637 236 V-GFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKY 314 (388)
T ss_pred e-EEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7 99974 36777777542110 011234455555555555432221 2233346777777888887763
Q ss_pred ---CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 199 ---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 199 ---~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
..+..|. +|.++|+++++ .+..+|.+.+.
T Consensus 315 ~~~~~~~~~~-------------------~g~~~~~~l~~-~~~~~l~~~l~ 346 (388)
T PRK08637 315 DDAWQAYPFN-------------------SGYFMCLKLKG-VDAEELRVHLL 346 (388)
T ss_pred CCCccccccc-------------------ceEEEEecCCh-HHHHHHHHHHh
Confidence 2322222 67888999973 34567777763
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=187.53 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=108.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+||..++. ++.+||+|++++|+|+.+...++ ..|.++..++ .|++.+++.+ + +++++++++||||||.+.+
T Consensus 65 ~al~~~~~-~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~~~-~d~~~l~~~~-~-~~~~vi~~~P~NPTG~~~~ 135 (311)
T PRK08354 65 EALYLIGI-LALRDRKVIIPRHTYGEYERVAR-----FFAARIIKGP-NDPEKLEELV-E-RNSVVFFCNPNNPDGKFYN 135 (311)
T ss_pred HHHHHHHH-hhCCCCeEEEeCCCcHHHHHHHH-----HcCCEEeecC-CCHHHHHHhh-c-CCCEEEEecCCCCCCCccC
Confidence 46666664 34589999999999999998884 3778877764 4789998887 4 5678999999999999976
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+++|+++|+++|+++|+||+|.++..+. ...+..++++|+||.|+++|.|+ ||+++ +.+.++....
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRi-G~~v~---~~~~l~~~~~ 206 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRV-GYVKG---FEEAFRSVRM 206 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcccee-eeeee---hHHHHHHcCC
Confidence 5677778899999999999997775432 22457899999999999999997 99998 4555655443
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=186.89 Aligned_cols=260 Identities=17% Similarity=0.185 Sum_probs=177.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc----CCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ----GRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~----~~~~~v~~~~~~nptG 77 (324)
+++..++++++++||+|++++|+|+++...++ . .|.++.+++..|.+++++++.+ ++++++++++++||||
T Consensus 72 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~----~-~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG 146 (349)
T cd06454 72 AANDGVLSTLAGKGDLIISDSLNHASIIDGIR----L-SGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146 (349)
T ss_pred HHHHHHHHHhcCCCCEEEEehhhhHHHHHHHH----H-cCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCC
Confidence 35666677788999999999999999877663 2 6888887777788889888843 4678999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCC-C--------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLV-L--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~--------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
...|+++|+++|+++|+++|+|++|+ +.. . .....++|++++|+||+++++ +|+++.++++.+.+.
T Consensus 147 ~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~i~~~~~~~~~~~ 222 (349)
T cd06454 147 DIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV----GGYIAGSKELIDYLR 222 (349)
T ss_pred CccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhccc----CCEEECCHHHHHHHH
Confidence 99999999999999999999999984 222 1 112347899999999999875 489999988888876
Q ss_pred HhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ..+.+......+. .+..........+++.++++.+.+.|++.+..+..+.
T Consensus 223 ~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------------------- 281 (349)
T cd06454 223 SYARGF--IFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELGFPVGGSP------------------- 281 (349)
T ss_pred Hhchhh--hccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------
Confidence 544311 1222233222222 2222222345667788999999999998765433221
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.+.++++.+++.....++.+.+.. .|+.. +.+++ +. .....+.+|++++ ..++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~L~~---~gI~~-~~~~~------~~--------------~~~~~~~iRi~~~-~~~~~~ 336 (349)
T cd06454 282 SHIIPPLIGDDPAKAVAFSDALLE---RGIYV-QAIRY------PT--------------VPRGTARLRISLS-AAHTKE 336 (349)
T ss_pred CCcEEEEeCCChHHHHHHHHHHHh---CCceE-EEecC------Cc--------------cCCCCCeEEEEEe-CCCCHH
Confidence 233455555433456677777764 24311 11111 00 0111478999999 887888
Q ss_pred HHHHHHHHHHhh
Q 020548 305 RWSQFEKALSRM 316 (324)
Q Consensus 305 ~~~~l~~~l~~~ 316 (324)
.++.+.++|+.+
T Consensus 337 ~i~~~~~~l~~~ 348 (349)
T cd06454 337 DIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHHh
Confidence 888888777653
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=190.90 Aligned_cols=277 Identities=18% Similarity=0.238 Sum_probs=181.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|+++.++|+++...+...... .|.+++.++.+ |++++++++ ++++++|++++++|||
T Consensus 73 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~n~t 150 (376)
T TIGR01977 73 TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQ-IGVEITIVKCDNEGLISPERIKRAI-KTNTKLIVVSHASNVT 150 (376)
T ss_pred HHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHhc-CCCCeEEEEECCCCCc
Confidence 4778888888899999999999999887766544433 58888877653 799999999 7889999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh--
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-- 152 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-- 152 (324)
|.+.|+++|.++|+++|+++|+|++++ + ...+....++|++++|++|++++|.+. |++++.++..++.+......
T Consensus 151 G~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~-g~l~~~~~~~~~~~~~~~~~~~ 229 (376)
T TIGR01977 151 GTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGT-GGLYIREGIKLKPLKSGGTGSH 229 (376)
T ss_pred cccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCc-eEEEEcCCcCcCceecCCCccc
Confidence 999999999999999999999999982 2 223444568999999999999876544 34445554322211110000
Q ss_pred h----------hhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHH
Q 020548 153 A----------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 153 ~----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~ 216 (324)
. .++..+++.......+...++. .+...++..++++++.+.|++.+. .+..|.-+
T Consensus 230 ~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--------- 300 (376)
T TIGR01977 230 SALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADP--------- 300 (376)
T ss_pred cccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc---------
Confidence 0 0011122222222221112222 334556678888999999987653 54433211
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc-CCCCCeEEEE
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA-GISAGLVRMS 295 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iR~s 295 (324)
...+++++|.+++. +...+.+.+.. .+|+ .++.|..++...++ .. ....+.+|+|
T Consensus 301 ------~~~~~~v~~~~~~~-~~~~~~~~L~~--~~gi-~v~~g~~~~~~~~~--------------~~g~~~~~~iRis 356 (376)
T TIGR01977 301 ------ANRVGVVSFTVEGI-DSEEVADILDE--KFDI-ATRTGLHCAPLAHK--------------TIGTFATGTIRLS 356 (376)
T ss_pred ------cccCCeEEEEECCC-CHHHHHHHHhc--cCCE-EEEcccccchHHHH--------------HhCCCCCCeEEEe
Confidence 02466888988742 35566666653 1233 33334332221111 11 1235789999
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q 020548 296 VGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~ 315 (324)
++ ..+++++++.+.++|+.
T Consensus 357 ~~-~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 357 LG-YFNTEEEIEKLLEALSE 375 (376)
T ss_pred cC-CCCCHHHHHHHHHHHhh
Confidence 99 99999999999988865
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=190.73 Aligned_cols=269 Identities=20% Similarity=0.252 Sum_probs=181.6
Q ss_pred chHHHHHHHccC---CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++.. +||+|++++++|++....+...... .|.+++.++.+ |++++++.+ ++++++|++++++
T Consensus 72 ~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~ 149 (373)
T cd06453 72 EAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAER-TGAKLKVVPVDDDGQLDLEALEKLL-TERTKLVAVTHVS 149 (373)
T ss_pred HHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhh-cCcEEEEeecCCCCCcCHHHHHHHh-cCCceEEEEeCcc
Confidence 467778888876 8999999999999876555444333 68888888754 899999999 7799999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-cCC-CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|++++ +.. .+..+.++|++++|++|+++++| +|+++.++++++.+.+...
T Consensus 150 ~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g---~g~~~~~~~~~~~~~~~~~ 226 (373)
T cd06453 150 NVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTG---IGVLYGKEELLEEMPPYGG 226 (373)
T ss_pred cccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCC---cEEEEEchHHhhcCCCeec
Confidence 999999999999999999999999999983 222 23334589999999999998744 4999999888877765432
Q ss_pred hhh-----------------hccCCCCCHHHHHH---HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCC
Q 020548 152 GAL-----------------MLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLED 208 (324)
Q Consensus 152 ~~~-----------------~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~ 208 (324)
+.. .+..+++....... .+..+ ..++...++..++++++.+.|++.+ .++..+.
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--- 303 (373)
T cd06453 227 GGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA--- 303 (373)
T ss_pred CCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc---
Confidence 100 01112222211111 11111 2344556667888899999998885 3544221
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
...+++++|.+++. +..++.+.+.. .|+ .++.|..++. ......+.
T Consensus 304 --------------~~~~~~~~~~~~~~-~~~~i~~~l~~---~gi-~i~~g~~~~~--------------~~~~~~~~- 349 (373)
T cd06453 304 --------------EDRAGVVSFNLEGI-HPHDVATILDQ---YGI-AVRAGHHCAQ--------------PLMRRLGV- 349 (373)
T ss_pred --------------cccCCeEEEEECCc-CHHHHHHHHHH---CCE-EeccCccchh--------------HHHHHhCC-
Confidence 02456889988742 34566666653 232 2222221110 00111222
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
++.||+|+| ..+++++++.+.++|
T Consensus 350 ~~~iRis~~-~~~t~~di~~~~~~l 373 (373)
T cd06453 350 PGTVRASFG-LYNTEEEIDALVEAL 373 (373)
T ss_pred CCeEEEEec-CCCCHHHHHHHHhhC
Confidence 478999999 999998888887764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=186.84 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=176.1
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC--CceEEEEecCCCCccccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVA 80 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~ 80 (324)
++..++..++++||+|++++|+|+.+...++ ..|.++..++..|++++++.+... +++++++++++|++|...
T Consensus 111 ~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~ 185 (385)
T PRK05958 111 ANLAVLTALAGKGDLIVSDKLNHASLIDGAR-----LSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLA 185 (385)
T ss_pred HHHHHHHHhCCCCCEEEEeCccCHHHHHHHH-----hcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcC
Confidence 3445667778999999999999999887763 367788888878999999988332 467777888999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcC-CC-C--------ccC-CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPL-VL-S--------PAR-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~-~~-~--------~~~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
++++|+++|+++|+++|+||+|+.. .. . ... .+.++++.|+||+++++ |||+++++++.+.+...
T Consensus 186 ~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~ 261 (385)
T PRK05958 186 PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS----GAAVLGSETLIDYLINR 261 (385)
T ss_pred CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC----CcEEEcCHHHHHHHHHh
Confidence 9999999999999999999999432 11 1 011 23568999999999875 48999998888877644
Q ss_pred hhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 150 HQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
........+.++.+..+. ..+..........+++.++++++.+.|++.+.++..| .|++
T Consensus 262 ~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--------------------~~~~ 321 (385)
T PRK05958 262 ARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALGFQLMDS--------------------QSAI 321 (385)
T ss_pred CccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC--------------------CCCE
Confidence 321111122222222222 1222222224456677889999999999877553322 4668
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.+++.....++.+.+.. .|+ .+..+. .+. ....++++|+|++ ...++++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~---~gI-~v~~~~------~~~--------------~~~~~~~lRis~~-~~~~~~~i~~ 376 (385)
T PRK05958 322 QPLIVGDNERALALAAALQE---QGF-WVGAIR------PPT--------------VPAGTSRLRITLT-AAHTEADIDR 376 (385)
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCc-eEeccc------CCC--------------CCCCCceEEEEec-CCCCHHHHHH
Confidence 89998765566778888764 343 111110 000 0112368999999 7777777777
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
+.++|+.
T Consensus 377 ~l~~l~~ 383 (385)
T PRK05958 377 LLEALAE 383 (385)
T ss_pred HHHHHHh
Confidence 7777654
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=189.32 Aligned_cols=204 Identities=11% Similarity=0.106 Sum_probs=141.0
Q ss_pred HHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc--CCceEEEEecCCCC
Q 020548 5 SSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFESISNP 75 (324)
Q Consensus 5 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~--~~~~~v~~~~~~np 75 (324)
...+..++.|||+|++++|+|+.+...++ ..|.++..++. .|++.+++.+.+ ++++++++++||||
T Consensus 132 ~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NP 206 (423)
T PLN02397 132 GAEFLARFYPGSTIYIPNPTWGNHHNIFR-----DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNP 206 (423)
T ss_pred HHHHHHHhCCCCEEEEeCCCchhHHHHHH-----HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 33444455799999999999999998884 36777766643 278888887732 56788888999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c-C---C-CCcEEEeCCccccccCCCeeEEEEE---
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A-R---L-GADVVVHSISKFISGGADIIAGAVC--- 137 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~-~---~-~~d~~~~S~sK~~~~~g~r~~G~i~--- 137 (324)
||.+.+ +++|+++|+++|+++|+||+|.++.++. . . . ...++++|+||.|+++|+|+ ||++
T Consensus 207 TG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv-G~~v~~~ 285 (423)
T PLN02397 207 TGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV-GALSVVC 285 (423)
T ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc-eEEEEEe
Confidence 999975 5678888999999999999997775421 0 0 1 24689999999999999997 9984
Q ss_pred cChhHHHHHH----HhhhhhhhccCCCCCHHHHHHHhcCcc----c---HHHHHHHHHHHHHHHHHHHHhCC----Ccee
Q 020548 138 GPANLVNSMM----DLHQGALMLLGPTMNPKVAFELSERIP----H---LGLRMKEHCHRALIFARRMKKLG----LKVL 202 (324)
Q Consensus 138 ~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~L~~~~----~~~~ 202 (324)
.++++++.+. .... ....+.+.+.+..+..++.... + +....+++.++++.+.+.|++++ ..+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~ 364 (423)
T PLN02397 286 KSADVAVRVKSQLKLIAR-PMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHI 364 (423)
T ss_pred CCHHHHHHHHHHHHHHHh-cccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 4666555433 3222 0011222233433333444321 1 34455678999999999999986 3333
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|. +|.++|+.++
T Consensus 365 ~p~-------------------gg~fl~~~l~ 377 (423)
T PLN02397 365 TKQ-------------------IGMFSFTGLN 377 (423)
T ss_pred cCC-------------------ceEEEecCCC
Confidence 343 6778888885
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=186.50 Aligned_cols=264 Identities=15% Similarity=0.137 Sum_probs=177.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH--HHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~--~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.++|.+. ...++ . .|.++..++.+ |++++++.+ ++ ++++|++++++
T Consensus 61 ~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~~~~~l~~~i-~~~~~~~v~i~~~~ 134 (356)
T cd06451 61 GAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAE----R-YGADVDVVEKPWGEAVSPEEIAEAL-EQHDIKAVTLTHNE 134 (356)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHH----H-hCCCeEEeecCCCCCCCHHHHHHHH-hccCCCEEEEeccC
Confidence 467888888999999999999887763 23331 2 67777777542 799999999 55 89999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH--h
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--L 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~--~ 149 (324)
||+|.+.|+++|.++|+++|+++++|++|+ ....+....+.|+++.|+||++++|. . +|+++.++++++.+.. .
T Consensus 135 ~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~-g-~G~l~~~~~~~~~~~~~~~ 212 (356)
T cd06451 135 TSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPP-G-LGPIAFSERALERIKKKTK 212 (356)
T ss_pred CCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCC-C-cceeEECHHHHHHHHhcCC
Confidence 999999999999999999999999999872 22234445578999999999998753 3 3999999888887763 0
Q ss_pred hhhh-------------hhccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 150 HQGA-------------LMLLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 150 ~~~~-------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
..+. .....+++...... .++..+ ..++...++..++++++.+.|++.+..+..+. ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~-- 288 (356)
T cd06451 213 PKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKP--EL-- 288 (356)
T ss_pred CCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCc--cc--
Confidence 0000 00122222222111 111111 22445566678889999999998877554321 00
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
..+.++++.+++..+...+.+.+.. +.|+.. +.| .. ...+++
T Consensus 289 ------------~~~~~~~~~~~~~~~~~~~~~~L~~--~~gI~~-~~g----------~~-------------~~~~~~ 330 (356)
T cd06451 289 ------------RSPTVTAVLVPEGVDGDEVVRRLMK--RYNIEI-AGG----------LG-------------PTAGKV 330 (356)
T ss_pred ------------CCCceEEEECCCCCCHHHHHHHHHH--hCCEEE-ecc----------cc-------------cccCCE
Confidence 1234556666643345667777664 113311 111 10 012368
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|+|++ ..+++++++.+.++|+.+
T Consensus 331 iRis~~-~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 331 FRIGHM-GEATREDVLGVLSALEEA 354 (356)
T ss_pred EEEecC-CCCCHHHHHHHHHHHHHH
Confidence 999999 888888899998888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-23 Score=185.58 Aligned_cols=261 Identities=13% Similarity=0.170 Sum_probs=176.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---C--CceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---G--RTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~--~~~~v~~~~~~npt 76 (324)
+++..+++++++|||+|++++|+|+++...+. ..+.++..++..|++++++.+.. + ++++|++++++|++
T Consensus 113 ~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~ 187 (397)
T PRK06939 113 DANGGLFETLLGKEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMD 187 (397)
T ss_pred HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH-----hcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCC
Confidence 36777888889999999999999999887773 25666667766789999888732 3 78888888899999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC-cCCCC----c---cCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS----P---ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~----~---~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|...++++|.++|+++|+++|+||+|. ++... . ... ++|++++|+||++++ +| +||+++++++++.+
T Consensus 188 G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g--~r-~G~v~~~~~~~~~l 264 (397)
T PRK06939 188 GDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGG--AS-GGYTAGRKEVIDWL 264 (397)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCc--cC-ceEEEeCHHHHHHH
Confidence 999999999999999999999999993 33211 1 112 468999999999953 47 49999999999888
Q ss_pred HHhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
....... ..+++..+..++. .+..+.......+++.++++.+.+.|++.+..+..|
T Consensus 265 ~~~~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~------------------- 323 (397)
T PRK06939 265 RQRSRPY--LFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAGFTLGPG------------------- 323 (397)
T ss_pred HHhCccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC-------------------
Confidence 7643211 1222323222221 122222223556677899999999999876543322
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.++++.+.+++..+..+|.+.+.. .|+ .+. +.. .+.. +...+++|++++ ...++
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~L~~---~gI-~v~-~~~-----~~~~--------------~~~~~~iRi~~~-~~~~~ 377 (397)
T PRK06939 324 -EHPIIPVMLGDAKLAQEFADRLLE---EGV-YVI-GFS-----FPVV--------------PKGQARIRTQMS-AAHTK 377 (397)
T ss_pred -CCCEEEEEECCHHHHHHHHHHHHH---CCc-eEe-eeC-----CCCC--------------CCCCceEEEEEC-CCCCH
Confidence 244666666654456778777764 243 211 100 0100 112368999998 75566
Q ss_pred HHHHHHHHHHHhhh
Q 020548 304 QRWSQFEKALSRMQ 317 (324)
Q Consensus 304 ~~~~~l~~~l~~~~ 317 (324)
+.++.+.+.|+.+-
T Consensus 378 ~~i~~~l~~L~~~~ 391 (397)
T PRK06939 378 EQLDRAIDAFEKVG 391 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666553
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=189.70 Aligned_cols=261 Identities=15% Similarity=0.152 Sum_probs=170.8
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
++|||+|++++++|.+....+...... .|.++..++.+ |++++++++ ++++++|++++|+||||.+.|+++|
T Consensus 101 ~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~lv~i~~~~n~tG~~~~~~~i 178 (397)
T TIGR01976 101 WGPGDEVIVTRLDHEANISPWLQAAER-AGAKVKWARVDEATGELHPDDLASLL-SPRTRLVAVTAASNTLGSIVDLAAI 178 (397)
T ss_pred CCCCCEEEEcCCchHhHHHHHHHHHHh-cCCEEEEEeccccCCCcCHHHHHHhc-CCCceEEEEeCCCCCCCccCCHHHH
Confidence 689999999999998877655433334 68888777653 689999999 7789999999999999999999999
Q ss_pred HHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh------hhcc
Q 020548 86 SRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA------LMLL 157 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~------~~~~ 157 (324)
.++|+++|+++++|+++. + ...+..+.++|++++|+||++|+ ++ |+++.++++++.+.+..... ..+.
T Consensus 179 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (397)
T TIGR01976 179 TELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP---HM-GILWGRPELLMNLPPYKLTFSYDTGPERFE 254 (397)
T ss_pred HHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCC---ce-EEEEEcHHHHhhCCCccccCccCCCcchhc
Confidence 999999999999999972 2 22233446899999999999853 44 99999988887776432210 1112
Q ss_pred CCCCCHHHHHH------HhcCcc-------------cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 158 GPTMNPKVAFE------LSERIP-------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 158 ~~~~~~~~~~~------~~~~~~-------------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
.+++....... .+.... .++...++..+.++++.+.|++.+ .++..|..+.
T Consensus 255 ~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~--------- 325 (397)
T TIGR01976 255 LGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLA--------- 325 (397)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc---------
Confidence 22333211111 111111 122333445677888888888876 4555442100
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC--CCCeEEEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMS 295 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iR~s 295 (324)
..++++.+.+++. ....+.++|.. .|+ .++.+..+. +...+..+. ..+.+|+|
T Consensus 326 ------~~~~~~~~~~~~~-~~~~l~~~L~~---~gI-~v~~~~~~~--------------~~~~~~~~~~~~~~~iRis 380 (397)
T TIGR01976 326 ------ARVPTVSFTVHGL-PPQRVVRRLAD---QGI-DAWAGHFYA--------------VRLLRRLGLNDEGGVVRVG 380 (397)
T ss_pred ------CCCceEEEEeCCc-CHHHHHHHHHH---CCe-EEEeCccch--------------HHHHHHhCCCCCCCeEEEE
Confidence 1466888887642 34566666664 343 222222111 001112233 24689999
Q ss_pred eccCCCHHHHHHHHHHHH
Q 020548 296 VGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l 313 (324)
++ ..+++++++.+.++|
T Consensus 381 ~~-~~~t~~di~~l~~~l 397 (397)
T TIGR01976 381 LA-HYNTAEEVDRLLEAL 397 (397)
T ss_pred ee-ccCCHHHHHHHHHhC
Confidence 99 888888888887654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=183.13 Aligned_cols=258 Identities=24% Similarity=0.273 Sum_probs=176.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CH--HHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DH--EMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~--~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++.++||+|+++.++|.++...++ ..|.++..++.+ +. +.++... ++++++|++++++|
T Consensus 70 ~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~i~~~~~ 143 (350)
T cd00609 70 EALSLLLRALLNPGDEVLVPDPTYPGYEAAAR-----LAGAEVVPVPLDEEGGFLLDLELLEAAK-TPKTKLLYLNNPNN 143 (350)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEEecccccCCccCHHHHHhhc-CccceEEEEECCCC
Confidence 57788888888999999999999999998884 266777777654 22 5555555 78899999999999
Q ss_pred CcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC---------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh-h
Q 020548 75 PTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS---------PARLGADVVVHSISKFISGGADIIAGAVCGPA-N 141 (324)
Q Consensus 75 ptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~---------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~ 141 (324)
|||.+.|.+ +|.++|+++|+++|+|++|+++... ....+.|++++|++|+++.+|.++ |+++.++ +
T Consensus 144 ~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~-G~i~~~~~~ 222 (350)
T cd00609 144 PTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRI-GYLIAPPEE 222 (350)
T ss_pred CCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccce-EEEecCHHH
Confidence 999998755 4558999999999999998554311 223368999999999998678886 9999888 7
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~ 219 (324)
+.+.+..... ......+...+..+..++... .......+++.++++++.+.|++.+... ..|
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------------- 286 (350)
T cd00609 223 LLERLKKLLP-YTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKP--------------- 286 (350)
T ss_pred HHHHHHHHHH-hcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC---------------
Confidence 8888877655 111222333333333344333 3455666677999999999999987632 222
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.+|.++++.+++......+.+.+.. .|+ .+..+.. + ....+.++|++++ .
T Consensus 287 ----~~g~~~~~~~~~~~~~~~~~~~l~~---~gi-~i~~~~~----------~-----------~~~~~~~iRi~~~-~ 336 (350)
T cd00609 287 ----SGGFFLWLDLPEGDDEEFLERLLLE---AGV-VVRPGSA----------F-----------GEGGEGFVRLSFA-T 336 (350)
T ss_pred ----CccEEEEEecCCCChHHHHHHHHHh---CCE-EEecccc----------c-----------ccCCCCeEEEEee-C
Confidence 2577888888754334445555553 232 1111111 0 0013578999999 6
Q ss_pred CCHHHHHHHHHHHHH
Q 020548 300 GTLDQRWSQFEKALS 314 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~ 314 (324)
. .++++.+.++++
T Consensus 337 ~--~~~i~~~~~al~ 349 (350)
T cd00609 337 P--EEELEEALERLA 349 (350)
T ss_pred C--HHHHHHHHHHhh
Confidence 6 555666666553
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=187.11 Aligned_cols=261 Identities=13% Similarity=0.165 Sum_probs=176.6
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc------CCc-----e-EEEEe
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ------GRT-----K-VLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~-----~-~v~~~ 70 (324)
+...++.++++|||.|++++|+|+++...+ +..|++++.++.+|.+++++.+++ +++ + +|+++
T Consensus 173 an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~-----~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve 247 (489)
T PLN02483 173 TNSTIIPALIGKGGLIISDSLNHNSIVNGA-----RGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247 (489)
T ss_pred HHHHHHHHhCCCCCEEEEcchhhHHHHHHH-----HHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEEC
Confidence 344567778999999999999999998877 337889988888888888877631 222 4 55567
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc--CCC---------CccCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVL---------SPARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~---------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
...|++|.+.++++|+++|+++|+++|+||+|+. +.. .....++|++++|+||+||+. |||++++
T Consensus 248 ~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~----GG~i~~~ 323 (489)
T PLN02483 248 GIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC----GGYIAGS 323 (489)
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC----ceEEEcC
Confidence 7889999999999999999999999999999842 111 011125799999999999886 5999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHH---HHHhc---C---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVA---FELSE---R---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~---~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
+++++.++...... ..+..+.+..+ ...+. . .....++.+++.++++.+.+.|++.++.+..+.
T Consensus 324 ~~li~~l~~~~~~~--~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~----- 396 (489)
T PLN02483 324 KELIQYLKRTCPAH--LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDN----- 396 (489)
T ss_pred HHHHHHHHHhCccc--cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccCCC-----
Confidence 99999988754311 12222221111 11121 1 122345667789999999999999876544222
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.++++++.+....+...|.+.+.. .|+..+. .+ .|.. ....+
T Consensus 397 --------------~sp~~~l~l~~~~~~~~~~~~Ll~---~GI~v~~-~~------fp~~--------------p~~~~ 438 (489)
T PLN02483 397 --------------DSPVMPIMLYNPAKIPAFSRECLK---QNVAVVV-VG------FPAT--------------PLLLA 438 (489)
T ss_pred --------------CCCEEEEEECCHHHHHHHHHHHHH---CCcEEee-eC------CCCC--------------CCCCc
Confidence 356778877655566677777664 3432211 10 1111 11236
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.+|++++ ...++++++.+.++|+++.+
T Consensus 439 ~vRi~is-a~~t~edId~~l~~L~~~~~ 465 (489)
T PLN02483 439 RARICIS-ASHSREDLIKALEVISEVGD 465 (489)
T ss_pred eEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 8999999 76666666666666665543
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=187.78 Aligned_cols=281 Identities=15% Similarity=0.123 Sum_probs=180.1
Q ss_pred hHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
++..++.+++ ++||+|+++..+|+++...+... .. .|.++..++.+ |++++++++ ++++++|++++++
T Consensus 72 a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~~~ 148 (381)
T PRK02948 72 SNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSL-ES-QGYTVTEIPVDKSGLIRLVDLERAI-TPDTVLASIQHAN 148 (381)
T ss_pred HHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHH-Hh-CCCEEEEEeeCCCCCCCHHHHHHhc-CCCCEEEEEECCc
Confidence 4555665554 67899999999999887776433 23 68888777653 799999999 7789999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH-HHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~-~~~l~~~~ 150 (324)
||||.+.|+++|.++|+++|+++++|+++ +....+..+.++|+++.|+||++|++| .|+++.++++ +..+....
T Consensus 149 n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~ 225 (381)
T PRK02948 149 SEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKG---VGAVYINPQVRWKPVFPGT 225 (381)
T ss_pred CCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCc---EEEEEEcCCCCCCCcccCC
Confidence 99999999999999999999999999876 222334445689999999999998776 4888776654 11111100
Q ss_pred hhhhhccCCCCCHH---HHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 151 QGALMLLGPTMNPK---VAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 151 ~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.....+..+++... ++..++... +.++...++..++++++.+.|++.+.++....-. .. ...
T Consensus 226 ~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~-~~-------------~~~ 291 (381)
T PRK02948 226 THEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHS-TS-------------CLP 291 (381)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCC-cc-------------CcC
Confidence 00000112222222 222222222 3455666777999999999999987644321100 00 123
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccce-eccccccccCCCCHHHHHhcCC----CCCeEEEEeccCCC
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL-MSCSGSSTSSELNAEEKALAGI----SAGLVRMSVGYLGT 301 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~iR~s~g~~~~ 301 (324)
.++.|.+++. ...++...+.. .|+ .++.|..++. +..| ......++. ..+.+|+|+| ..+
T Consensus 292 ~i~~~~~~~~-~~~~~~~~l~~---~gI-~v~~g~~c~~~~~~p---------~~~~~~~~~~~~~~~~~lRis~~-~~~ 356 (381)
T PRK02948 292 HIIGVTIKGI-EGQYTMLECNR---RGI-AISTGSACQVGKQEP---------SKTMLAIGKTYEEAKQFVRFSFG-QQT 356 (381)
T ss_pred CEEEEEeCCC-CHHHHHHhccc---CCE-EEEchHhcCCCCCCC---------CHHHHHcCCChHHhCceEEEEcC-CCC
Confidence 4677777632 23445555543 343 4444433221 1111 112222332 1478999999 999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 020548 302 LDQRWSQFEKALSRMQD 318 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~~~ 318 (324)
++++++.+.++|+.+-+
T Consensus 357 t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 357 TKDQIDTTIHALETIGN 373 (381)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887643
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=186.69 Aligned_cols=260 Identities=19% Similarity=0.175 Sum_probs=172.5
Q ss_pred ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHH
Q 020548 11 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 11 ~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 85 (324)
+.++||+|+++..+|+++...+.... . .|++++.++.+ |++++++++ ++++++|++++++|+||.+.|+++|
T Consensus 84 ~~~~g~~vl~~~~~h~s~~~~~~~~~-~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~v~~~~n~tG~~~~l~~I 160 (364)
T PLN02651 84 YKDKKKHVITTQTEHKCVLDSCRHLQ-Q-EGFEVTYLPVKSDGLVDLDELAAAI-RPDTALVSVMAVNNEIGVIQPVEEI 160 (364)
T ss_pred ccCCCCEEEEcccccHHHHHHHHHHH-h-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEECCCCCceecccHHHH
Confidence 45789999999999999887775442 3 68888777653 799999999 8889999999999999999999999
Q ss_pred HHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhh---hccCCC
Q 020548 86 SRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL---MLLGPT 160 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~---~~~~~~ 160 (324)
.++||++|+++++|+++ .+ ...+..++++|+++.|.|||+|++| .|+++.+++....+.+...+.. .+..++
T Consensus 161 ~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G---~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT 237 (364)
T PLN02651 161 GELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKG---VGALYVRRRPRVRLEPLMSGGGQERGRRSGT 237 (364)
T ss_pred HHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCc---eEEEEEcCCCCCCCCccccCCCccCCccCCC
Confidence 99999999999999998 22 4456667789999999999865544 4888766655554443322100 012233
Q ss_pred CCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 161 MNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.......+...++. .+...++..+.++++.+.|++ . +.++..|.-+.. ...++++|.++
T Consensus 238 ~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~--------------~~~~i~~~~~~ 303 (364)
T PLN02651 238 ENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEK--------------RYPGTLNLSFA 303 (364)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCccc--------------CcCCEEEEEeC
Confidence 332222222222222 233345567888888888876 3 446655531110 13558899887
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccCCCHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~~~~~~~ 306 (324)
+. +...+...|.. ++++.|..++..... .......+|.+ .+.+|+|++ ..++++++
T Consensus 304 ~~-~~~~~~~~L~~------i~v~~g~~c~~~~~~--------~~~~~~~~g~~~~~~~~~vR~S~~-~~~t~~di 363 (364)
T PLN02651 304 YV-EGESLLMGLKE------VAVSSGSACTSASLE--------PSYVLRALGVPEEMAHGSLRLGVG-RFTTEEEV 363 (364)
T ss_pred CC-CHHHHHHHhCC------EEEEchhhcCCCCCC--------cCHHHHHcCCChHHhCceEEEEcC-CCCCHHHc
Confidence 42 34556666653 356666554322100 11223445543 379999999 99888765
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=186.42 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=175.2
Q ss_pred hHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh---cCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV---QGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG 77 (324)
|+..++..+. .+||.|+++...|.++...+. ..|.++..++.+|.+++++.++ .+++++|++++|+||||
T Consensus 118 a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG 192 (410)
T PRK13392 118 SNDAALSTLGKLLPGCVILSDALNHASMIEGIR-----RSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDG 192 (410)
T ss_pred HHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHH-----HcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCc
Confidence 4455666554 389988888778887766552 2577766666667777776663 25789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCC-CCc--------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSP--------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~~--------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++. ... .....|++++|+||+||++ |||+++++++++.++
T Consensus 193 ~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~~~~~~~~l~ 268 (410)
T PRK13392 193 DIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAASADLIDFVR 268 (410)
T ss_pred ccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhcCHHHHHHHH
Confidence 99999999999999999999999994 332 110 1114689999999999887 489999999999887
Q ss_pred HhhhhhhhccCCCCC---HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMN---PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ ..+.... +.++..++..........+++.++++++.+.|++.+.++. |.
T Consensus 269 ~~~~~~--~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 326 (410)
T PRK13392 269 SFAPGF--IFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANGIPVM-PS------------------- 326 (410)
T ss_pred HhCcch--hccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC-------------------
Confidence 765421 1122222 2222223333333334556678889999999998876543 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.++......++.+.|.. +.|++. . .+..|.. +....++|+|++ ...+++
T Consensus 327 ~~~~~~i~~~~~~~~~~~~~~L~~--~~GI~v-~------~~~~p~~--------------~~~~~~lRis~~-~~~t~e 382 (410)
T PRK13392 327 PSHIVPVMVGDPTLCKAISDRLMS--EHGIYI-Q------PINYPTV--------------PRGTERLRITPT-PLHDDE 382 (410)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH--hCCEEE-e------eeCCCCC--------------CCCCceEEEEEC-CCCCHH
Confidence 355766777644456677776642 133311 1 1111111 112368999998 888888
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+.+.++
T Consensus 383 did~l~~aL~~~~~~ 397 (410)
T PRK13392 383 DIDALVAALVAIWDR 397 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889998888877554
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-23 Score=183.78 Aligned_cols=261 Identities=15% Similarity=0.113 Sum_probs=174.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~ 79 (324)
++..++.+++++||.|++++|.|+++...+. ..|.++..++..|++++++.+.. +++++|++++++||||.+
T Consensus 105 a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~ 179 (385)
T TIGR01825 105 TNQGVLSALLRKGDIVLSDELNHASIIDGLR-----LTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDV 179 (385)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCc
Confidence 5566777889999999999999999876663 25677777766788888887732 368899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCC----------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLS----------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~----------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
.|+++|.++|+++|+++|+||+|+.+... ....+.|+++.|+||+++++ +||+++++++++.+...
T Consensus 180 ~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----gG~~~~~~~~~~~~~~~ 255 (385)
T TIGR01825 180 APLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV----GGYAAGHKELIEYLKNR 255 (385)
T ss_pred cCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC----CCEEecCHHHHHHHHHh
Confidence 99999999999999999999999433211 12236889999999999775 49999999988888755
Q ss_pred hhhhhhccCCCCC-HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 150 HQGALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.......+...+. ..++...+..+.......++..++++++.+.|++.+.++..|. +++
T Consensus 256 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------------~~~ 315 (385)
T TIGR01825 256 ARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYDTGGSE--------------------TPI 315 (385)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--------------------CCE
Confidence 3211111111111 1122222222222224556677889999999998776544332 346
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+.+.++.......|.+.+.. .|+. +..+. .+.. +...+.||++++ ...++++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~L~~---~gi~-v~~~~------~~~~--------------~~~~~~iRi~~~-~~~~~e~i~~ 370 (385)
T TIGR01825 316 TPVVIGDEKAAQEFSRRLFD---EGIF-AQSIV------FPTV--------------PRGTARIRNIPT-AEHTKDDLDQ 370 (385)
T ss_pred EEEEECCHHHHHHHHHHHHH---CCcE-EcccC------CCCC--------------CCCCceEEEEEc-CCCCHHHHHH
Confidence 67777654445667777654 2331 11110 0100 112368999998 7777777777
Q ss_pred HHHHHHhhh
Q 020548 309 FEKALSRMQ 317 (324)
Q Consensus 309 l~~~l~~~~ 317 (324)
+.++++++-
T Consensus 371 ~~~~l~~~~ 379 (385)
T TIGR01825 371 ALDAYEKVG 379 (385)
T ss_pred HHHHHHHHH
Confidence 777776653
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-23 Score=182.24 Aligned_cols=194 Identities=20% Similarity=0.277 Sum_probs=138.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc------CCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~------~~~~~v~ 68 (324)
+|+..++.+++++||+|+++.++|.+....++ ..|+++..++.+ |++++++++.+ +++++|+
T Consensus 70 ~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~ 144 (361)
T cd06452 70 EGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAE-----RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALAL 144 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcchHHHHHHH-----hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEE
Confidence 47888888889999999999999888765552 368888777542 78999888832 3789999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
+++|+||||...|+++|.++|+++|+++|+|++|+ + ...+..+.++|++++|+||++++ +.++ ||++.++++++.+
T Consensus 145 l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~-~~~~-G~l~~~~~~~~~l 222 (361)
T cd06452 145 LTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAA-SAPI-GVLATTEEWADIV 222 (361)
T ss_pred EECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccC-CCCe-EEEEECHHHHHHH
Confidence 99999999999999999999999999999999983 2 22444566899999999999976 4585 9999999999888
Q ss_pred HHhhhhhh----hccCCCCCHHHHHHHhcCcccHH---HHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 147 MDLHQGAL----MLLGPTMNPKVAFELSERIPHLG---LRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 147 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
........ ...+.+.....+..+...+.... .+.++..++++++.+.|+++ ++++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~ 286 (361)
T cd06452 223 FRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQL 286 (361)
T ss_pred hccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 66443110 01122222111111222222222 23333455678999999998 56654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=184.25 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=179.4
Q ss_pred chHHHHHHHc-----cCC-CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQL-----CSS-GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~-----~~~-gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++.++ .++ +|+|+++..+|+++...+... .. .|.++.+++.+ |++++++++ ++++++|+++
T Consensus 71 eal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~-~~-~G~~v~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~ 147 (382)
T TIGR03403 71 ESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFL-ES-LGVEVTYLPINEQGTITAEQVREAI-TEKTALVSVM 147 (382)
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHH-HH-CCCEEEEEecCCCCCCCHHHHHHhc-ccCCeEEEEE
Confidence 4667777764 245 478999999999988877433 33 78888888764 789999999 7789999999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+++||||.+.|+++|.++|+++|+++++|++++ + ...+..+.++|+++.|+||++|++| .|+++.++... +.+
T Consensus 148 ~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~g~l~vr~~~~--~~p 222 (382)
T TIGR03403 148 WANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKG---VGGLYIRKGVE--LTP 222 (382)
T ss_pred cccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCc---eEEEEECCCCC--CCC
Confidence 999999999999999999999999999999983 2 3334455689999999999987776 47776554321 111
Q ss_pred hhhh---hhhccCCCCCHHH---HHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 149 LHQG---ALMLLGPTMNPKV---AFELSERI-PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
...+ ......+++.... +..++... +.++...++..+.++++.+.|++.+. .+..|.-.
T Consensus 223 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~------------- 289 (382)
T TIGR03403 223 LFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREH------------- 289 (382)
T ss_pred cccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCC-------------
Confidence 1100 0001112222222 11222211 12344456678888899999988653 44433200
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEe
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSV 296 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~ 296 (324)
..++++.|.+++. ....+...|.. .|+ .++.|..++.. . ......+..+|.+ .+.||+|+
T Consensus 290 ---~~~~~~~~~~~~~-~~~~~~~~L~~---~gI-~v~~g~~c~~~------~--~~~~~v~~~~g~~~~~~~~~iR~s~ 353 (382)
T TIGR03403 290 ---RVPNTILISIKGV-EGEAMLWDLNK---AGI-AASTGSACASE------D--LEANPVMVAIGADKELAHTAIRLSL 353 (382)
T ss_pred ---CcCCEEEEEeCCC-CHHHHHHhhcc---CCE-EEEchhccCCC------C--CCcCHHHHHcCCChHHhCeeEEEEC
Confidence 1244777888742 23445554543 333 44555433211 1 1112334445543 36899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 020548 297 GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+ ..+++++++.+.++|+.+.
T Consensus 354 ~-~~~t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 354 S-RFTTEEEIDYTIEVFKKAV 373 (382)
T ss_pred C-CCCCHHHHHHHHHHHHHHH
Confidence 9 9999999999999887664
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-23 Score=184.74 Aligned_cols=267 Identities=15% Similarity=0.144 Sum_probs=174.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc---CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ---GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~---~~~~~v~~~~~~ 73 (324)
+++..++..++++||+|+++++.|.+.. +.....+ .|.+++.++.+ |++++++++.. +++++|++++++
T Consensus 71 ~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~-~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~ 147 (401)
T PLN02409 71 GAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQR-LNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNE 147 (401)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHH-cCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeec
Confidence 4677777788899999999999887654 2222233 68887777653 79999999933 379999999999
Q ss_pred CCcccccChHHHHHH--HHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 74 NPTLAVANIPELSRL--AHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l--~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
||||.+.|+++|.++ |+++|+++++|++++ ....+..++++|+++.|.||++++|. ++ |+++.++++++.+.+.
T Consensus 148 ~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~-G~-G~l~~~~~~~~~~~~~ 225 (401)
T PLN02409 148 TSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPT-GL-GIVCASPKALEASKTA 225 (401)
T ss_pred ccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCC-Cc-ceeEECHHHHHHHhcC
Confidence 999999999999999 999999999999983 22234445689999999999997754 44 9999999888887643
Q ss_pred hhh--------------hhhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 150 HQG--------------ALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 150 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
... .+.....+++......+...++ .++...+++.++++++.+.|++.++++..|.-.
T Consensus 226 ~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~--- 302 (401)
T PLN02409 226 KSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPE--- 302 (401)
T ss_pred CCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChh---
Confidence 210 0001011232211111111122 244566777889999999999888765543200
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
...+.++++.++...+...+...+.. ++|+ .+..| . ....+.
T Consensus 303 ------------~~s~~v~~~~~p~~~~~~~l~~~l~~--~~~i-~i~~G----------~-------------~~~~~~ 344 (401)
T PLN02409 303 ------------WRSDTVTAVVVPEGIDSAEIVKNAWK--KYNL-SLGLG----------L-------------NKVAGK 344 (401)
T ss_pred ------------hcccceEEEeCCCCCCHHHHHHHHHH--hCCE-EEEcC----------C-------------CcccCC
Confidence 01345677887633334455555432 1232 11111 0 011357
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+|+|.. -+++.+.+..+..+|+.
T Consensus 345 ~~Rig~~-g~~~~~~~~~~~~~~~~ 368 (401)
T PLN02409 345 VFRIGHL-GNVNELQLLGALAGVEM 368 (401)
T ss_pred EEEEcCC-CCCCHHHHHHHHHHHHH
Confidence 8999987 66666665555555554
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=180.77 Aligned_cols=266 Identities=20% Similarity=0.243 Sum_probs=181.8
Q ss_pred hHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 3 AISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 3 ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
|++.++.++ +++||+|++.+.+|++....+.....+ .|.++..++.+ |++++++++ ++++++|++++.+|
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~i~~~~~~~~~~~~~~~~l-~~~~~lv~~~~~~~ 150 (371)
T PF00266_consen 73 ALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKR-KGAEVRVIPADPGGSLDLEDLEEAL-NPDTRLVSISHVEN 150 (371)
T ss_dssp HHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHH-TTEEEEEEEEGTTSSCSHHHHHHHH-HTTESEEEEESBET
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccc-chhhhccccccccchhhhhhhhhhh-ccccceEEeecccc
Confidence 677888887 789999999999999999888766544 78888877642 899999999 79999999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.||...|+++|.++||++|+++++|.++ +....+..+.++|++++|.+|++|++| .|+++.++++.+.+.+...+
T Consensus 151 ~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G---~g~l~v~~~~~~~~~p~~~~ 227 (371)
T PF00266_consen 151 STGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPG---LGFLYVRPEAIERLRPAKPG 227 (371)
T ss_dssp TTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSST---EEEEEEEHHHHHHHHTSSSS
T ss_pred cccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCc---hhhheehhhhhhcccccccc
Confidence 9999999999999999999999999997 223345556689999999999555555 49999998888888543321
Q ss_pred -----------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCC
Q 020548 153 -----------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDH 209 (324)
Q Consensus 153 -----------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~ 209 (324)
...+.++++.......+...++. ++...++..++.+++.+.|++.+. .+..|..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~--- 304 (371)
T PF00266_consen 228 GGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDD--- 304 (371)
T ss_dssp SSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSC---
T ss_pred ccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecc---
Confidence 11123334444332222222222 334445668889999999999887 4444431
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
...++++++|.+++. +...+.+.|.. .|+ .++.|..+... .....+. +
T Consensus 305 ------------~~~~~~i~~~~~~~~-~~~~~~~~L~~---~~I-~~~~G~~~~~~--------------~~~~~~~-~ 352 (371)
T PF00266_consen 305 ------------EPRRPSIVSFNLPGS-DADDVVKYLEE---RGI-AVSTGSACAGP--------------SLDILGM-G 352 (371)
T ss_dssp ------------GGBGTTEEEEEETTS-SHHHHHHHHHH---HTE-EEEESTTTCHH--------------HHHHHHT-T
T ss_pred ------------cccccceEEEeecCC-CHHHHHHHHhh---cCE-EEeccCcccHH--------------HHHHhCC-C
Confidence 113678999999742 23444444443 122 33444332210 0001122 2
Q ss_pred CeEEEEeccCCCHHHHHHHH
Q 020548 290 GLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l 309 (324)
+.||+|+| ..+++++++.|
T Consensus 353 ~~iRvS~~-~~nt~~dv~~l 371 (371)
T PF00266_consen 353 GVIRVSLH-YYNTEEDVDRL 371 (371)
T ss_dssp TEEEEE-G-TTSSHHHHHHH
T ss_pred CEEEEecc-CCCCHHHHhhC
Confidence 89999999 99999888875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=182.57 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=173.2
Q ss_pred hHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|+..++.++ .++||+|+++.++|+++...+..+ .. .|.+++.++.+ |++++++++ ++++++|++++++
T Consensus 76 a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~v~~~~ 152 (402)
T TIGR02006 76 SNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-ER-EGFEVTYLPPKSNGLIDLEELKAAI-RDDTILVSIMHVN 152 (402)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECCC
Confidence 455555544 368999999999999988777433 23 58888887653 899999999 7789999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|+++ .+ ...+..+.++|+++.|+||++|++| .|+++.+++....+.+...
T Consensus 153 n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~G~l~~~~~~~~~~~~~~~ 229 (402)
T TIGR02006 153 NEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKG---IGALYVRRKPRVRLEALIH 229 (402)
T ss_pred cCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCc---eEEEEEccCCCCCCCceec
Confidence 99999999999999999999999999998 22 2334445689999999999887555 4777665543333322211
Q ss_pred hh--h-hccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 152 GA--L-MLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 152 ~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+. . .+..+++.......+...+ ..++...++..+.++++.+.|++.+. .+..+.....
T Consensus 230 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~-------------- 295 (402)
T TIGR02006 230 GGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRV-------------- 295 (402)
T ss_pred CCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccC--------------
Confidence 10 0 0112222222211111111 23445556678888889998887653 3322110000
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccC
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYL 299 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~ 299 (324)
.....++|...+ .+.+...++. +.++.|..++... .........+|+. .+.||+|+| .
T Consensus 296 p~~~~v~f~~~~---~~~~~~~l~~------i~v~~G~~c~~~~--------~~~~~~l~~lg~~~~~~~~~vR~S~~-~ 357 (402)
T TIGR02006 296 PGNLNVSFNYVE---GESLIMALKD------LAVSSGSACTSAS--------LEPSYVLRALGINDELAHSSIRFTIG-R 357 (402)
T ss_pred CCeEEEEEeCcC---HHHHHHhcCC------EEEechhhcCCCC--------CCccHHHHHcCCChhhcCceEEEEec-C
Confidence 012234554222 2234444432 2444443332110 0011222334543 478999999 8
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 020548 300 GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~ 317 (324)
.+++++++.+.++|..+.
T Consensus 358 ~~t~edid~l~~~l~~~~ 375 (402)
T TIGR02006 358 FTTEEEIDYAVKLVKSAI 375 (402)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999998887764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=164.76 Aligned_cols=256 Identities=11% Similarity=0.116 Sum_probs=183.3
Q ss_pred hHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 3 AISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 3 ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
.|..+++..|.|| ++|+...|+|+.|.--. .+.+++++.++.. +.+++.+.+..+ .+|++++++|+||
T Consensus 98 ~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A-----~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSPgNP 172 (375)
T KOG0633|consen 98 LIDLIIRCVCDPGKEKILDCPPTYSMYVVDA-----AINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNP 172 (375)
T ss_pred HHHHHHhheecCCccceeecCCcceeEEEEe-----ecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCCCCC
Confidence 5788899999999 89999999999876433 4578999888764 789999888544 7999999999999
Q ss_pred cccccChHHHHHHHHhc-CCEEEEcCCCCcCCC--Cc----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 76 TLAVANIPELSRLAHDK-GVTVVVDNTFSPLVL--SP----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~--~~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
||.....+.|.++..-. +.++++||+|-.|.- +. -+..+-+++.++||.||..|.|+ |+-..+..+.+.+..
T Consensus 173 tg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRv-G~~~~~~~ia~iln~ 251 (375)
T KOG0633|consen 173 TGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRV-GYGAFPLSIAEILNR 251 (375)
T ss_pred CcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCcceeEe-ecccccHHHHHHHHh
Confidence 99998888888877654 799999999965542 11 23478899999999999999997 999999999999988
Q ss_pred hhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 149 LHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...+ ..-+.+....+..+++ ....++.......+.+.++...|.+.++ ++..+.
T Consensus 252 ~KaP---YNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~------------------- 309 (375)
T KOG0633|consen 252 AKAP---YNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGS------------------- 309 (375)
T ss_pred ccCC---ccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcc-------------------
Confidence 7764 3334444444444444 4556777777788888899999998876 332222
Q ss_pred cceEEEEEeC---CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 225 FGGLLCLDME---TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 225 ~g~~~~~~l~---~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
.++|+.+++. +........+.+.. .|+ -+.+.+.+ .|. .+++|+++|+.++
T Consensus 310 daNFiLi~v~~~~n~~akkly~q~at~---~gV-vVRfrgse---------------------~~c-~G~lRitvGt~Ee 363 (375)
T KOG0633|consen 310 DANFILIEVTGGDNGMAKKLYKQDATK---MGV-VVRFRGSE---------------------EGC-KGYLRITVGTPEE 363 (375)
T ss_pred cccEEEEEEcCCCcHHHHHHHHHHHHh---cce-EEEEcCCc---------------------ccc-ceeEEEEcCCccc
Confidence 4668888876 22322323332222 222 11111110 112 4899999996566
Q ss_pred HHHHHHHHHHH
Q 020548 302 LDQRWSQFEKA 312 (324)
Q Consensus 302 ~~~~~~~l~~~ 312 (324)
+..+++.+++.
T Consensus 364 ntvL~k~~K~~ 374 (375)
T KOG0633|consen 364 NTVLMKCLKQF 374 (375)
T ss_pred chHHHHHHHhh
Confidence 77777777664
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=179.23 Aligned_cols=262 Identities=15% Similarity=0.187 Sum_probs=171.7
Q ss_pred hHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|+..++..+.+ +++.|+.....|.+....+. ..|.++..++..|.+++++.++. +++++|++++|+||+|
T Consensus 117 an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G 191 (402)
T TIGR01821 117 ANDATLATLAKIIPGCVIFSDELNHASMIEGIR-----HSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDG 191 (402)
T ss_pred HHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHH-----HcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCC
Confidence 45566666554 67777776666766665553 25666666666788888887732 3689999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCCCC-----c----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-----P----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~-----~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++... . .....|++++|++|.+|++ |||+++++++++.+.
T Consensus 192 ~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~~~~~~~~l~ 267 (402)
T TIGR01821 192 DIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAASRKLIDAIR 267 (402)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----CceeecCHHHHHHHH
Confidence 99999999999999999999999984 32211 0 1113689999999999887 499999999988887
Q ss_pred HhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....+. .......+..++. .++.+.......++..++++++.+.|++.+.++. +.
T Consensus 268 ~~~~~~--~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 325 (402)
T TIGR01821 268 SYAPGF--IFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALGIPVI-PN------------------- 325 (402)
T ss_pred HhCcCc--eecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcCCCcC-CC-------------------
Confidence 654321 1122223222222 2222222233445567889999999998876543 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.++.......+.+.+.. +.|++. ..+.+|.. ....+++|+|+. ...+.+
T Consensus 326 ~~~i~~i~~~~~~~a~~~~~~L~~--~~Gi~v-------~~~~~p~~--------------~~g~~~lRis~~-~~~t~e 381 (402)
T TIGR01821 326 PSHIVPVIIGDAALCKKVSDLLLN--KHGIYV-------QPINYPTV--------------PRGTERLRITPT-PAHTDK 381 (402)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHh--cCCEEE-------EeECCCCC--------------CCCCceEEEEeC-CCCCHH
Confidence 355778877654456667777542 123311 11111211 112368999998 777888
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+.+.++
T Consensus 382 di~~~~~~l~~~~~~ 396 (402)
T TIGR01821 382 MIDDLVEALLLVWDR 396 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776543
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=178.06 Aligned_cols=254 Identities=15% Similarity=0.171 Sum_probs=166.5
Q ss_pred hHHHHHHHccC-CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc------CCceEEEEe
Q 020548 3 AISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ------GRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~------~~~~~v~~~ 70 (324)
++..++.++++ +||+|++++|+|....... ... ...|.++..++.+ |++++++.+.. +++++|+++
T Consensus 67 a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~ 144 (353)
T PLN02721 67 GNLISVLVHCDVRGSEVILGDNSHIHLYENG-GIS-TLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLE 144 (353)
T ss_pred HHHHHHHHHccCCCCeEEEcCccceehhccc-chh-hhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEe
Confidence 34456666676 9999999999986544310 011 2268888877642 89999999932 588999997
Q ss_pred c-CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCC--cC---CCCcc--CCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 71 S-ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS--PL---VLSPA--RLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 71 ~-~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~--~~---~~~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
+ ++||+|.+.| +++|.++|+++|+++|+|++|. .+ ...+. ..++|.++.|+||+++++ +||+++++
T Consensus 145 ~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~ 221 (353)
T PLN02721 145 NTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAP---VGSVIVGS 221 (353)
T ss_pred ccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCc---eeeEEecC
Confidence 7 6788999876 7899999999999999999872 11 11222 226788899999999764 24457889
Q ss_pred hhHHHHHHHhhhhhhhccCCCCC--HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-Cce-eCCCCCCCchhHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKV-LYPGLEDHPHHELL 215 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~-~~p~~~~~~~~~~~ 215 (324)
+++++.+..... ..++.+. ...++..+..+.....++++..++++.+.+.|++.+ ..+ ..+.
T Consensus 222 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------- 287 (353)
T PLN02721 222 KSFIRKAKRLRK----TLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAV---------- 287 (353)
T ss_pred HHHHHhHHHHHH----hcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCc----------
Confidence 999888776654 2222211 112222222233333345555677889999999874 333 2121
Q ss_pred HHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 216 KSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
.+++++++++.. .....+.+.|.. .|+. ..|. .++++|
T Consensus 288 ---------~~~~~~~~~~~~~~~~~~~~~~~L~~---~gi~-----------v~~~-----------------~~~~lR 327 (353)
T PLN02721 288 ---------ETNIVYFDITDGSRITAEKLCKSLEE---HGVL-----------LMPG-----------------NSSRIR 327 (353)
T ss_pred ---------cceEEEEEccCCccccHHHHHHHHHh---CCcE-----------EecC-----------------CCceEE
Confidence 356889988642 346677777764 3331 1111 146899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++++ ...++++++.+.++|+++
T Consensus 328 ~~~~-~~~~~~~i~~~~~~l~~~ 349 (353)
T PLN02721 328 VVTH-HQISDSDVQYTLSCFQQA 349 (353)
T ss_pred EEec-CcCCHHHHHHHHHHHHHH
Confidence 9999 777788888887777654
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=177.75 Aligned_cols=194 Identities=19% Similarity=0.265 Sum_probs=141.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc------CCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ------GRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~------~~~~~v~ 68 (324)
+|+..++.+++++||+|+++.++|.+....++ ..|.++..++. .|++++++++.+ +++++|+
T Consensus 89 ~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~ 163 (387)
T PRK09331 89 EGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAE-----RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALAL 163 (387)
T ss_pred HHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEE
Confidence 46788888889999999999999988876652 36888888876 279999998842 3789999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
+++|+|++|.+.|+++|+++|+++|+++++|++|+ + +..+....++|++++|+||++++ +.++ |+++.++++++.+
T Consensus 164 l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~-~~~~-G~l~~~~~~i~~~ 241 (387)
T PRK09331 164 LTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAA-SAPS-GVLATTEEYADKV 241 (387)
T ss_pred EECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccC-CCCE-EEEEECHHHHhhc
Confidence 99999999999999999999999999999999983 2 23444566899999999999976 4565 9999999888877
Q ss_pred HHhhhhhh----hccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 147 MDLHQGAL----MLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 147 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
......+. ...+.+..+..+..++..+..+ ..+.++..++++++.+.|++. |+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~ 305 (387)
T PRK09331 242 FRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQL 305 (387)
T ss_pred ccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 55432110 0112222211111112122222 234455677888999999998 66655
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=169.61 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=153.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|...++..++.|||.-+++.|.|+++-.-++. + .|++++++... +.+++|+++++ .+++.|++
T Consensus 157 ~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~---r-Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvli 232 (471)
T KOG0256|consen 157 SANETLMFCLADPGDAFLVPTPYYPGFDRDLRW---R-TGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLI 232 (471)
T ss_pred hhhHHHHHHhcCCCceeeecCCCCCccccccee---c-cCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEE
Confidence 456677777899999999999999999766631 3 68888888753 58888888742 47899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-c-----c--------CCCCcEEEeCCccccccCCCee
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-P-----A--------RLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-~-----~--------~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++|+||.|.+.+ +..+..++.++++.+|+||+|++-.++ + + ..+..-++.|+||-+|.||.|+
T Consensus 233 tNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRv 312 (471)
T KOG0256|consen 233 TNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRV 312 (471)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEE
Confidence 999999999976 456677788999999999999443221 1 1 2245688999999999999998
Q ss_pred EEEEEc-ChhHHHHHHHhhhhhhhccC-CCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 133 AGAVCG-PANLVNSMMDLHQGALMLLG-PTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 133 ~G~i~~-~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
|.|+. ++++....++... +.. ++..|..++.++.+-.. +.+..+|+..+.+++.+.|++.|+.+. +.
T Consensus 313 -GviYS~ne~VvsaA~kmss----f~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl-~s- 385 (471)
T KOG0256|consen 313 -GVIYSNNEDVVSAATKMSS----FGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCL-KS- 385 (471)
T ss_pred -EEEEecChHHHHHHHHHhh----ccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcee-ec-
Confidence 99976 5567777776655 333 33444455555554322 345556778888999999999998665 33
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|-++|+.+.
T Consensus 386 -----------------~AGlF~wvDlr 396 (471)
T KOG0256|consen 386 -----------------NAGLFCWVDLR 396 (471)
T ss_pred -----------------CCeeEEEEEhH
Confidence 47889999886
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-22 Score=177.23 Aligned_cols=278 Identities=14% Similarity=0.108 Sum_probs=176.0
Q ss_pred chHHHHHHHcc---CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~---~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++ .+||+|+++..+|+++...++.. .+ .|.++..++.+ |++++++++ +++++++++++++
T Consensus 70 ~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~g~~~~~~l~~~i-~~~~~lv~i~~~~ 146 (379)
T TIGR03402 70 ESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHL-EK-QGYKVTYLPVDEEGRLDLEELRAAI-TDDTALVSVMWAN 146 (379)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHH-HH-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEEccc
Confidence 35666666543 45789999999999888777543 23 68888887653 799999999 7899999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|++|+ + ...+..+.++|+++.|.+|++|++| .|+++.+++.. +.+...
T Consensus 147 n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~g~l~v~~~~~--~~p~~~ 221 (379)
T TIGR03402 147 NETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKG---VGALYIRKGTR--FRPLLR 221 (379)
T ss_pred CCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCc---eEEEEECCCCC--CCCccc
Confidence 999999999999999999999999999983 2 2234445689999999999776555 48887665431 221111
Q ss_pred h-h--hhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHh-CCC-ceeCCCCCCCchhHHHHHHhccC
Q 020548 152 G-A--LMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKK-LGL-KVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 152 ~-~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~-~~~-~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+ . .....+++.......+...+ ..++...++..++++++.+.|++ .+. .+..+.. .
T Consensus 222 g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~--~------------- 286 (379)
T TIGR03402 222 GGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPT--K------------- 286 (379)
T ss_pred CCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCc--c-------------
Confidence 0 0 00112222222211111111 23444445667888888888875 543 4432220 0
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
..++++.|.++.. ....+...+.. .|+ .++.|..++..... .......+|.. ++.||+|+|
T Consensus 287 -~~~~~~~~~~~~~-~~~~~~~~l~~---~gI-~v~~g~~c~~~~~~--------~~~~~~~lg~~~~~~~~~vR~S~~- 351 (379)
T TIGR03402 287 -RLPNTVNISFEYI-EGEAILLLLDM---EGI-CASSGSACTSGSLE--------PSHVLRAMGVPHTAAHGSIRFSLS- 351 (379)
T ss_pred -CCCCEEEEEecCC-CHHHHHHhhcc---CCE-EEEchhhcCCCCCC--------cCHHHHHcCCChhhcCceEEEEcC-
Confidence 1233666666532 23456666653 343 44555433221100 01223334442 478999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~ 317 (324)
..+++++++.+.++|+.+.
T Consensus 352 ~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 352 RYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999988888887664
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=176.97 Aligned_cols=262 Identities=16% Similarity=0.195 Sum_probs=172.4
Q ss_pred hHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|...++..+++ +++.|+.....|.+....++ ..+.++..++..|++++++.++. +++++|++++++||+|
T Consensus 118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~-----~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G 192 (407)
T PRK09064 118 SNDATLSTLAKLIPDCVIFSDELNHASMIEGIR-----RSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDG 192 (407)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHH-----HcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCc
Confidence 33445555443 67766666666666655552 24566666666788888888732 5789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cC-CCC--c----cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PL-VLS--P----AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~-~~~--~----~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++ ... . .. ...|++++|+||.||+. |||+++++++++.+.
T Consensus 193 ~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~~~~~~~~~~~l~ 268 (407)
T PRK09064 193 DIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM----GGYIAGSAALVDAVR 268 (407)
T ss_pred cccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc----CceEecCHHHHHHHH
Confidence 99999999999999999999999984 43 211 0 11 14589999999999886 499999999888887
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ .......+..++.++..++.+ ....++..++++++.+.|++.++++. +.
T Consensus 269 ~~~~~~--~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 326 (407)
T PRK09064 269 SYAPGF--IFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAGIPVM-PN------------------- 326 (407)
T ss_pred HhCccc--cccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCC-CC-------------------
Confidence 654321 112222333222222223222 23356678899999999998876543 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.+++......+.+.+.. +.|++. ..+..|.. ....+++|+|++ ..++++
T Consensus 327 ~~~iv~i~~~~~~~~~~l~~~L~~--~~gi~v-------~~~~~p~~--------------~~~~~~lRis~~-~~~t~e 382 (407)
T PRK09064 327 ESHIVPVMVGDPEKCKKASDMLLE--EHGIYV-------QPINYPTV--------------PRGTERLRITPT-PFHTDE 382 (407)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH--hCCEEE-------eeECCCCC--------------CCCCceEEEEeC-CCCCHH
Confidence 356788888654456667776542 123311 11111111 111367999999 888888
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+.+.++
T Consensus 383 di~~l~~~l~~~~~~ 397 (407)
T PRK09064 383 MIDHLVEALVEVWAR 397 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876543
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=178.12 Aligned_cols=264 Identities=15% Similarity=0.173 Sum_probs=175.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--------CCc-eEEEEecCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--------GRT-KVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--------~~~-~~v~~~~~~ 73 (324)
++..++.+++++||.|++....|.++...+ .+.+.++.+++.+|.++++..+++ +++ ++|++++++
T Consensus 181 a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~-----~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~ 255 (481)
T PLN02822 181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGL-----YLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIY 255 (481)
T ss_pred HHHHHHHHhCCCCCEEEEeCCccHHHHHHH-----HHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence 567788889999999998888777776555 235677888888888777776631 234 799999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCC--c------cC---CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS--P------AR---LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~------~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|++|.+.|+++|+++|++||+++|+||+|+..... . .. ...|++++|++|.+|++ |||+++++++
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~----GG~i~g~~~i 331 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATE----GGFCTGSARV 331 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhC----CeEEEcCHHH
Confidence 99999999999999999999999999999522211 0 11 15789999999999877 4999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHH--HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHh
Q 020548 143 VNSMMDLHQGALMLLGPTMNPK--VAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++.++.... ..+++++.+... ++..++..+....+..++++++++.+.+.|++. ++.+..|.
T Consensus 332 i~~~~~~~~-~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-------------- 396 (481)
T PLN02822 332 VDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNT-------------- 396 (481)
T ss_pred HHHHHhcCC-ceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCC--------------
Confidence 988875443 222333333222 222233222222456677899999999999986 44443333
Q ss_pred ccCCCcceEEEEEeCCH--------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 220 NKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
.++++++.+++. .....|.+.+.. +.|++. ..+. +|... .+..+..
T Consensus 397 -----~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~--e~GV~v-~~~~------~~~~~------------~~~~~~~ 450 (481)
T PLN02822 397 -----LSPIVFLHLEKSTGSAKEDLSLLEHIADRMLK--EDSVLV-VVSK------RSTLD------------KCRLPVG 450 (481)
T ss_pred -----CCCEEEEEeCCCcccccchHHHHHHHHHHHHh--cCCEEE-EeeC------CCCcC------------CCCCCCc
Confidence 577888888631 224567766541 133311 1110 11100 0111346
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|+++. ...++++++.+.++|+++.
T Consensus 451 lRi~is-~~~t~edI~~~~~~l~~~~ 475 (481)
T PLN02822 451 IRLFVS-AGHTESDILKASESLKRVA 475 (481)
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 999988 7777777777777776553
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=175.83 Aligned_cols=258 Identities=16% Similarity=0.075 Sum_probs=167.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhc------CCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQ------GRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~------~~~~~v~~~~ 71 (324)
+|+..++.+++++||+|++++|+|....... ... +..|.++..++. .|++++++++.+ +++++|++++
T Consensus 58 ~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~ 135 (338)
T cd06502 58 AANQLALAAHTQPGGSVICHETAHIYTDEAG-APE-FLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLEN 135 (338)
T ss_pred HHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHH-HHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEe
Confidence 4677888888999999999999987654211 000 125778777765 389999999832 2789999999
Q ss_pred CCCCccc--ccChHHHHHHHHhcCCEEEEcCCCCcC-----CCC--ccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 72 ISNPTLA--VANIPELSRLAHDKGVTVVVDNTFSPL-----VLS--PARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 72 ~~nptG~--~~~~~~i~~l~~~~~~~~ivD~~~~~~-----~~~--~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|+||+|. ..++++|+++|+++|+++++|++|..+ ... ....+.|+++.|+||++++++ |++++.++++
T Consensus 136 p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~~~~ 212 (338)
T cd06502 136 TTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GAVVVGNRDF 212 (338)
T ss_pred ecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ceEEECCHHH
Confidence 9998443 245788999999999999999987211 111 112368899999999998876 4566789899
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
++.+....... ..+.......+..+...+ .....+.++..++++++.+.|++.+..+. |.
T Consensus 213 ~~~~~~~~~~~--~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~--------------- 274 (338)
T cd06502 213 IARARRRRKQA--GGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGGLES-EV--------------- 274 (338)
T ss_pred HHHHHHHHHHh--CCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCcc-cc---------------
Confidence 99887765411 111122222222222222 22445667778888999999999876332 22
Q ss_pred cCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 221 KEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 221 ~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.++++.+.++ +......+.+.+....+.|+ ...+ ...+++|++++ .
T Consensus 275 ----~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi-----------~~~~-----------------~~~~~lRi~~~-~ 321 (338)
T cd06502 275 ----QTNIVLLDPVEANAVFVELSKEAIERRGEGV-----------LFYA-----------------WGEGGVRFVTH-W 321 (338)
T ss_pred ----cCCeEEEecCCccHHHHHHHHHHHHhhhCCE-----------EEEe-----------------cCCCeEEEEee-c
Confidence 3567777775 33334445444321000121 1111 01278999999 8
Q ss_pred CCHHHHHHHHHHHHHh
Q 020548 300 GTLDQRWSQFEKALSR 315 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~ 315 (324)
.+++++++.+.++++.
T Consensus 322 ~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 322 DTTEEDVDELLSALKA 337 (338)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 8888888887777754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=172.95 Aligned_cols=271 Identities=13% Similarity=0.118 Sum_probs=173.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHh---hh----------cCCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSA---IV----------QGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~---l~----------~~~~~~v~ 68 (324)
+|+..++.+++++||+|+++++.|.++...+. ..+.++.+++..|.+++++. +. ++++++|+
T Consensus 69 ~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~-----l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi 143 (392)
T PLN03227 69 STTSSTVAAFAKRGDLLVVDRGVNEALLVGVS-----LSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLV 143 (392)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-----HcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEE
Confidence 45667888889999999999999999877662 13456666666666665553 31 13688999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCC-----------CccCCCCcEEEeCCccccccCCCeeEEE
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVL-----------SPARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~-----------~~~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+++++||+|.+.|++++.++|+++|+++|+||+|+ + +.. .| ..++|+++.|++|.+++. +|+
T Consensus 144 ~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p-~~~~Div~~slsk~~g~~----gg~ 218 (392)
T PLN03227 144 VEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKP-MVHAEIVTFSLENAFGSV----GGM 218 (392)
T ss_pred EcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCC-CCCceEEEeechhhhhcc----CcE
Confidence 99999999999999999999999999999999984 2 211 11 236799999999998654 599
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC---CCCCC
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP---GLEDH 209 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p---~~~~~ 209 (324)
+++++++++.++.... .. ..++++.+..++. .+......+.+.++..++.+++.+.|++.+...... .+.-.
T Consensus 219 v~~~~~~~~~~~~~~~-~~-~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~ 296 (392)
T PLN03227 219 TVGSEEVVDHQRLSGS-GY-CFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVIT 296 (392)
T ss_pred EecCHHHHHHHHHhCc-Cc-cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccC
Confidence 9999888877764432 11 2333323322222 222222234667778999999999998744321100 00000
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHH---------HHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEK---------ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---------~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
....|+++.+.+.+... ...+.+.+.. .|++....|... ....|
T Consensus 297 ------------~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~Gi~~~~~~~~~-~~~~~----------- 349 (392)
T PLN03227 297 ------------SDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS---EGVAVVSTGGHV-KKFLQ----------- 349 (392)
T ss_pred ------------CCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH---CCCEEEeccccc-CCcCC-----------
Confidence 00247789999965322 2356666553 343221112110 00001
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
..++..||++++ ...++++++.+.++++++-
T Consensus 350 -----~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~~ 380 (392)
T PLN03227 350 -----LVPPPCLRVVAN-ASHTREDIDKLLTVLGEAV 380 (392)
T ss_pred -----CCCCceEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 123577999999 8888887777777766554
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=174.35 Aligned_cols=261 Identities=15% Similarity=0.186 Sum_probs=173.8
Q ss_pred hHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|+..++..+.+ +||.|+.....|.++...+. ..|.++..++..|++++++.++. +++++|++++++|++|
T Consensus 117 An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G 191 (406)
T PRK13393 117 SNWAALSTLGSRLPGCVILSDELNHASMIEGIR-----HSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDG 191 (406)
T ss_pred HHHHHHHHhhcCCCCCEEEEccchhHHHHHHHH-----HcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCC
Confidence 55566665554 78888777888887777663 24666777777788888887732 3678999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCC-CC--------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLV-LS--------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~--------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.++|+++|+++|+||+|+ ++. .. ......|++++|++|.++++ |||+++++++.+.+.
T Consensus 192 ~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~~~~~~~~l~ 267 (406)
T PRK13393 192 DIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITGSAALCDFIR 267 (406)
T ss_pred chhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeCCHHHHHHHH
Confidence 99999999999999999999999983 432 11 01113588889999999886 499999999888887
Q ss_pred HhhhhhhhccCCCCCHH---HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPK---VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ ..+.+..+. ++...+..........+++.++++++.+.|++.+..+. +.
T Consensus 268 ~~~~~~--~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 325 (406)
T PRK13393 268 SFASGF--IFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAGIPHL-PN------------------- 325 (406)
T ss_pred HhCcCc--eecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCCcC-CC-------------------
Confidence 654421 122233322 22222222222223345567888999999988765432 22
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.|+++.+.+++......+.+.+.. +.|++. ..+.+|.. ....+.+|+|++ ..++++
T Consensus 326 ~~~i~~v~~~~~~~~~~l~~~L~~--~~Gi~v-------~~~~~p~~--------------p~g~~~iRis~~-~~~t~e 381 (406)
T PRK13393 326 PSHIVPVMVGDPVLCKQISDELLD--RYGIYV-------QPINYPTV--------------PRGTERLRITPS-PLHTDA 381 (406)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH--hCCEEE-------EeECCCCC--------------CCCCceEEEEEC-CCCCHH
Confidence 466777777654455667766652 123311 11111211 112368999999 888888
Q ss_pred HHHHHHHHHHhhhh
Q 020548 305 RWSQFEKALSRMQD 318 (324)
Q Consensus 305 ~~~~l~~~l~~~~~ 318 (324)
+++.+.++|+.+.+
T Consensus 382 did~l~~~l~~~~~ 395 (406)
T PRK13393 382 DIEHLVQALSEIWA 395 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999888887754
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=176.86 Aligned_cols=255 Identities=17% Similarity=0.089 Sum_probs=169.6
Q ss_pred HHHHccCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 7 VLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 7 ~~~~~~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
+..+.+.+ ||+|+++++.|+++...+.....+ .|.+++.++.+ |++++++++ ++++++|++++|+ ++|.+
T Consensus 98 ~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~t~~viv~~~~-~~G~~ 174 (398)
T cd00613 98 GLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEP-LGIEVVEVPSDEGGTVDLEALKEEV-SEEVAALMVQYPN-TLGVF 174 (398)
T ss_pred HHHHHhcccCCCEEEEcCccCcchHHHHHHhccc-CCcEEEEeccCCCCCcCHHHHHHhc-CCCeEEEEEECCC-CCcee
Confidence 34444555 999999999999999888654433 56777777653 689999999 8889999999985 89999
Q ss_pred cCh-HHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhHHHHHHHhhhh
Q 020548 80 ANI-PELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 80 ~~~-~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.|. ++|+++|+++|+++|+|++++. ....+...++|++++|+||++ +| |++. |+++.++++.+.+.....+
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~-g~l~~~~~~~~~~~~~~~~ 252 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGA-GFFAVKKELVRFLPGRLVG 252 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCce-eEEEEhhhhHhhCCCCeec
Confidence 885 9999999999999999998732 233445568999999999998 44 5674 9999988877764211000
Q ss_pred ---------------------------hhhccCCC-CCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 153 ---------------------------ALMLLGPT-MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 153 ---------------------------~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.....++. .....++..+. ....+++..+++.++++++.+.|++.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 332 (398)
T cd00613 253 VTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLP 332 (398)
T ss_pred cccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 00001111 11112222222 1223455667789999999999998765321
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
+. . .....+++.++. .....++.+.|.. .|++. ....
T Consensus 333 -~~---~--------------~~~~~v~~~~~~~~~~~~~~~~~~L~~---~gi~~-----------~~~~--------- 371 (398)
T cd00613 333 -FN---G--------------PFFHEFVLRLPPLYGIRAEDLAKALID---GGFHA-----------PTMY--------- 371 (398)
T ss_pred -CC---C--------------CeeEEEEEEcCCcchHHHHHHHHhhhh---cCccc-----------cccc---------
Confidence 21 0 123346777763 3456777777764 23211 0000
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
....+.+|+|++ ..+++++++.+.++|
T Consensus 372 -----~~~~~~lRis~~-~~~t~edid~~~~~L 398 (398)
T cd00613 372 -----LPVDGTLMIEPT-ETETKEELDALLEAL 398 (398)
T ss_pred -----cCCCCeEEEEcC-CCCCHHHHHHHHHhC
Confidence 002478999999 999998888887654
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=161.56 Aligned_cols=206 Identities=18% Similarity=0.238 Sum_probs=156.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc--------CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ--------GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~--------~~~~~v~~ 69 (324)
.|+..+++.++++||.|++...+|++....+ +..|+.++.|+.+ ++|.|++.+.+ +++++++.
T Consensus 135 ~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~-----~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYT 209 (472)
T KOG0634|consen 135 DGLFKVLRTLINRGDHVLIEEYTYPSALQSM-----EALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYT 209 (472)
T ss_pred hHHHHHHHHhhcCCCceEEecccchHHHHhc-----cccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEe
Confidence 4788899999999999999999999988877 4478888888876 78888887632 34666665
Q ss_pred -ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------------------------ccCC---CCcEE
Q 020548 70 -ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------------------------PARL---GADVV 117 (324)
Q Consensus 70 -~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------------------------~~~~---~~d~~ 117 (324)
.+.+||||...+ .++|.++|++|+++||+||.|.-+... ...+ |+++-
T Consensus 210 IPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr 289 (472)
T KOG0634|consen 210 IPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIR 289 (472)
T ss_pred CcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEe
Confidence 669999999976 459999999999999999998332211 0111 67799
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC------cccHHHHHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------IPHLGLRMKEHCHRALIFA 191 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 191 (324)
..||||.+ +||.|+ ||+.+++.+++++..... ..+...+..++.....++.. ++++.+....|..++..+.
T Consensus 290 ~dSFSKii-aPGlRl-G~it~~~~~l~ril~~ae-~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l 366 (472)
T KOG0634|consen 290 NDSFSKII-APGLRL-GWITGNSLFLKRILDLAE-VATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALL 366 (472)
T ss_pred ccchhhhh-cCccee-EEeecCHHHHHHHhhhcc-eeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 569998 999999988888876654 33344455666655554432 2445666677899999999
Q ss_pred HHHHhC-CC---ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKL-GL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~-~~---~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
..|.+. +. ++..|. .|.|+|++++
T Consensus 367 ~Al~kylp~~~~~~~~P~-------------------aGmFiwv~i~ 394 (472)
T KOG0634|consen 367 SALDKYLPKSVCEYHPPK-------------------AGMFIWVEIP 394 (472)
T ss_pred HHHHHhCCCCeeEEecCC-------------------cceEEEEEec
Confidence 999886 33 344444 7999999995
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=172.29 Aligned_cols=265 Identities=15% Similarity=0.132 Sum_probs=166.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
+|+..++.+++.+||++++..+.+.+.. +.....+ .|.+++.++.+ |++++++++.. .+++++.+.+++||
T Consensus 65 ~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 141 (363)
T TIGR02326 65 FAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEY-LGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETT 141 (363)
T ss_pred HHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHH-cCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCC
Confidence 5788888888888888777665554432 1111223 67777776653 78999999833 35678889999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
||...|+++|.++|+++|+++++|++++ ....+..++++|++++|+||++++|. . .|+++.+++.++.+.....+
T Consensus 142 tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~-G-~G~l~~~~~~~~~~~~~~~~~ 219 (363)
T TIGR02326 142 TGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVP-G-FGFVIARQAELAACKGNARSL 219 (363)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCC-c-ceEEEECHHHHHHhhcCCCce
Confidence 9999999999999999999999999872 22233345589999999999985532 2 39999988877765321100
Q ss_pred ----------------hhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 153 ----------------ALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 153 ----------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
...+..+.+...+...++..+ ..++.+.+++.++++++.+.|++.+..+..+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------ 293 (363)
T TIGR02326 220 SLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEI------ 293 (363)
T ss_pred eecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc------
Confidence 000111111111111122111 1245666778999999999999988755433200
Q ss_pred HHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 214 LLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
..+.+++|.+++. .+...+.+.+.. .|+ .+ .++.. ...+.
T Consensus 294 ----------~~~~~~~~~~~~~~~~~~~~v~~~L~~---~gi-~v----------~~g~~--------------~~~~~ 335 (363)
T TIGR02326 294 ----------QSPIITSFYSPEDPDYRFADFYQRLKE---QGF-VI----------YPGKV--------------SQVDC 335 (363)
T ss_pred ----------CCceEEEEECCCCCCCCHHHHHHHHHH---CCE-EE----------ECCcC--------------CCCCE
Confidence 1234567887642 244566677664 233 11 22111 11368
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|+|+. ...+.+.++.+.++|+.+
T Consensus 336 iRi~~~-~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 336 FRIGNI-GEVDAADITRLLTAIGKA 359 (363)
T ss_pred EEEecC-CCCCHHHHHHHHHHHHHH
Confidence 999964 345566666666666554
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=169.57 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=170.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
.|+..++.++..+||+|++..+.|.+.. +.....+ .|.++..++.+ |++++++++.. .++++|++++++||
T Consensus 67 ~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~-~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 143 (368)
T PRK13479 67 FSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEY-LGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETT 143 (368)
T ss_pred HHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHH-cCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCc
Confidence 4788889999999999999888776653 1112223 67777777653 79999998832 35678999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCC---CCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHHhhh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLV---LSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~---~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||...|+++|.++|+++|+++|+|+++ .+. .+..+.+.|++++|++|++++ +| + ||++.++++++.+.....
T Consensus 144 tG~~~~~~~i~~l~~~~~~~livDa~~-~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G--~-G~l~~~~~~~~~~~~~~~ 219 (368)
T PRK13479 144 TGILNPLDEIAAVAKRHGKRLIVDAMS-SFGAIPIDIAELGIDALISSANKCIEGVPG--F-GFVIARRSELEACKGNSR 219 (368)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEccc-ccCCccccccccCceEEEecCccccccCCC--c-eEEEECHHHHHHhhcCCC
Confidence 999999999999999999999999765 332 233345789999999998744 45 3 999999988877654321
Q ss_pred hhh-------------hccCCCCCHH---HHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 152 GAL-------------MLLGPTMNPK---VAFELSE---RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 152 ~~~-------------~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
... .....+++.. ....++. ....++++.+++.++++.+.+.|++.++++..+.-.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----- 294 (368)
T PRK13479 220 SLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEI----- 294 (368)
T ss_pred CeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchh-----
Confidence 000 0000112211 1111121 122355667788999999999999988754433200
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
....++.|.++.. .+..++.+.+.. .|+ .+ .++.. ...+
T Consensus 295 -----------~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gi-~v----------~~g~~--------------~~~~ 335 (368)
T PRK13479 295 -----------QSPIIVTFHAPADPAYDFKEFYERLKE---QGF-VI----------YPGKL--------------TQVD 335 (368)
T ss_pred -----------cCceEEEEECCCCCCcCHHHHHHHHHH---CCE-EE----------ecCCC--------------CCCC
Confidence 1223566666522 234567777664 233 11 11110 0136
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.+|+|.. ..++.++++.+.++|+.+-+
T Consensus 336 ~iRis~~-~~~t~edi~~~l~~L~~~l~ 362 (368)
T PRK13479 336 TFRIGCI-GDVDAADIRRLVAAIAEALY 362 (368)
T ss_pred EEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 7999964 34566777777777766643
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=175.17 Aligned_cols=276 Identities=14% Similarity=0.119 Sum_probs=169.0
Q ss_pred hHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|++.++.++ .++||+|++++++|+++...+..+ .+ .|+++.+++.+ |++++++++ ++++++|++++++
T Consensus 78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~-~g~~~~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~~~~ 154 (404)
T PRK14012 78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLDPQSNGIIDLEKLEAAM-RDDTILVSIMHVN 154 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-Hh-CCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECcC
Confidence 556666554 478999999999999988777533 22 58888887653 899999999 8889999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++++|++++ + ...+....++|++++|++|.+|++| + |+++.+++....+.+...
T Consensus 155 n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g--~-G~l~~~~~~~~~~~~~~~ 231 (404)
T PRK14012 155 NEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKG--I-GALYVRRKPRVRLEAQMH 231 (404)
T ss_pred CCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCc--e-EEEEEecCCCCCCCceec
Confidence 999999999999999999999999999982 2 2234445689999999999876433 3 777655543323322111
Q ss_pred hhhh---ccCCCCCHHHHH---HHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 152 GALM---LLGPTMNPKVAF---ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 152 ~~~~---~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+... +..+++...... .++.. ........+++.+.++++.+.|++.+. .+..+. ... .
T Consensus 232 g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~-~~~-------------~ 297 (404)
T PRK14012 232 GGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDL-EQR-------------V 297 (404)
T ss_pred CCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCc-ccc-------------C
Confidence 1000 111111211111 11111 112344556677888888888877653 322111 000 0
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccce-eccccccccCCCCHHHHHhcCC----CCCeEEEEecc
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL-MSCSGSSTSSELNAEEKALAGI----SAGLVRMSVGY 298 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~iR~s~g~ 298 (324)
.....++|.+.+. ..+...++. ++++.|..+.. ...|. .....++. ..+.||+|++
T Consensus 298 ~~~~~~~~~~~~~---~~~~~~l~~------~~i~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~iRls~~- 358 (404)
T PRK14012 298 PGNLNVSFNYVEG---ESLIMALKD------LAVSSGSACTSASLEPS---------YVLRALGLNDELAHSSIRFSLG- 358 (404)
T ss_pred CCEEEEEEeCcCH---HHHHHhCCC------eEEEchhhhCCCCCCCC---------HHHHHcCCChhhcCceEEEEec-
Confidence 1223456665432 235555542 23344433211 00110 00111232 3578999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~ 317 (324)
..+++++++.+.++|+++.
T Consensus 359 ~~~t~~dvd~~~~~l~~~~ 377 (404)
T PRK14012 359 RFTTEEEIDYAIELVRKSI 377 (404)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 8888888888888877653
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=168.47 Aligned_cols=261 Identities=15% Similarity=0.151 Sum_probs=167.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCC-chh-HHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTL-YGG-THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~-y~~-~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~ 73 (324)
+|+..++.+++.+||++++..+. |+. +...++ . .|.++..++.+ |++++++++.. ++++++++++++
T Consensus 61 ~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~----~-~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 135 (355)
T TIGR03301 61 FAVEATIGSLVPRDGKLLVLINGAYGERLAKICE----Y-LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHE 135 (355)
T ss_pred HHHHHHHHhccCCCCeEEEECCCchhhHHHHHHH----H-cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecC
Confidence 47788888888888887766554 443 223332 2 67777776643 79999999832 356788888999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|+||...|+++|.++|+++|+++|+|++++. ...+....++|++++|++|++++ +| + |+++.++++++.+....
T Consensus 136 ~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G--~-g~~~~~~~~~~~~~~~~ 212 (355)
T TIGR03301 136 TTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPG--F-GFVIARRDLLEASAGNA 212 (355)
T ss_pred CcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCc--e-eEEEECHHHHHHhhCCC
Confidence 9999999999999999999999999997622 22233345799999999999754 44 4 99999999888765211
Q ss_pred hhh------------h-hccCCCCCHHHH---HHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 151 QGA------------L-MLLGPTMNPKVA---FELSERI---PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 151 ~~~------------~-~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
... . .....+++.... ...+..+ ..++...++++++++++.+.|++.+.++..|.-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~---- 288 (355)
T TIGR03301 213 RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERW---- 288 (355)
T ss_pred CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCC----
Confidence 000 0 001112222221 1122211 2256677788899999999999887654433210
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
..+.++++.++.. .+...+.+.+.. .|+ .+.++.. ...
T Consensus 289 ------------~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-----------~i~~~~~--------------~~~ 328 (355)
T TIGR03301 289 ------------QSPIIVSFLYPDDPDFDFDDFYQELKE---RGF-----------VIYPGKL--------------TLA 328 (355)
T ss_pred ------------CCCcEEEEECCCCCcchHHHHHHHHHH---CCE-----------EEECCcc--------------ccc
Confidence 1344678888631 334567777664 232 1112110 012
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+++|+|+. ..++.++++.+.++|+.
T Consensus 329 ~~iRis~~-~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 329 DTFRIGTI-GEIDAADIERLLEAIKD 353 (355)
T ss_pred cEEEEecC-CCCCHHHHHHHHHHHHh
Confidence 68999996 66677777888777764
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=173.58 Aligned_cols=267 Identities=16% Similarity=0.186 Sum_probs=169.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhh-hcCcccceeEEEec--CC------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVD--IS------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-~~~~~~g~~~~~~~--~~------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++++|||+|++++|+|+++...... .... .|.++..++ .+ |++++++++.++++++++++++
T Consensus 92 ~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~ 170 (402)
T cd00378 92 QANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSA-SGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGAS 170 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCccCccccccccccccc-cceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCc
Confidence 477888899999999999999999877554211 0112 565444432 22 8999999984568999999888
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNS 145 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~ 145 (324)
+|| ...|+++|+++|+++|+++|+|++| .++. ..+.. +.|++++|+||+++ |.+ +|+++.++ ++.+.
T Consensus 171 ~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l~--G~~-gg~i~~~~~~~~~~ 244 (402)
T cd00378 171 AYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTLR--GPR-GGLILTRKGELAKK 244 (402)
T ss_pred ccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCCC--CCC-ceEEEeccHHHHHH
Confidence 775 5679999999999999999999996 4432 22333 67999999999983 556 58888776 88888
Q ss_pred HHHhhhhhhhccCCCCCHHHH-HHHhc-Ccc-cHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCCCCCchhHHHHHHhcc
Q 020548 146 MMDLHQGALMLLGPTMNPKVA-FELSE-RIP-HLGLRMKEHCHRALIFARRMKKLGLKVL-YPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~p~~~~~~~~~~~~~~~~~ 221 (324)
+....... ...++.+....+ ..++. ... ....+.+++.++++++.+.|++.++.+. .|.
T Consensus 245 l~~~~~~~-~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------- 307 (402)
T cd00378 245 INSAVFPG-LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGT---------------- 307 (402)
T ss_pred HHHHhCcc-ccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCC----------------
Confidence 87654311 111111122211 11121 222 3456677789999999999999877553 222
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC
Q 020548 222 EYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300 (324)
Q Consensus 222 ~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~ 300 (324)
.++++|+.+++ ......+.+.+.. .|+ .+... ..|..... ...++.+|+++. ..
T Consensus 308 ---~~~~v~v~~~~~~~~~~~~~~~l~~---~gI-~v~~~------~~p~~~~~-----------~~~~~~lRi~~~-~~ 362 (402)
T cd00378 308 ---DNHLVLVDLRPKGITGKAAEDALEE---AGI-TVNKN------TLPWDPSS-----------PFVPSGIRIGTP-AM 362 (402)
T ss_pred ---CCeEEEEeCCccCCCHHHHHHHHHH---cCc-EEcCC------cCCCCCCC-----------CCCCCeeEecCH-HH
Confidence 46788999862 2223344444442 333 11111 01211100 112468999987 43
Q ss_pred C----HHHHHHHHHHHHHhhh
Q 020548 301 T----LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 301 ~----~~~~~~~l~~~l~~~~ 317 (324)
+ .+++++.+.+.|..+-
T Consensus 363 ~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 363 TTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred HHhCCCHHHHHHHHHHHHHHH
Confidence 2 3566777777776653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=165.57 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=121.5
Q ss_pred chHHHHHHHccCCCCEEEEc---CCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAA---RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~---~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+|+..++.++++|||+|+++ .|.|.++...++ ..|.++.. ..++++++. .+++++|+++. +|++|.
T Consensus 82 ~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~-----l~ga~~~~--~~~l~~l~~---~~~~~lIiitg-~s~~G~ 150 (346)
T TIGR03576 82 SAILATILALEPPGRKVVHYLPEKPAHPSIPRSCK-----LAGAEYFE--SDELSELKK---IDGTSLVVITG-STMDLK 150 (346)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHH-----HcCCEEec--cCCHHHHhh---CcCceEEEEEC-CCCCCc
Confidence 47888899999999999975 468887777663 35666533 346666432 34678888864 689999
Q ss_pred c---cChHHHHHHHHhcCCEEEEcCCCCcCCC---C---ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 79 V---ANIPELSRLAHDKGVTVVVDNTFSPLVL---S---PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 79 ~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~---~---~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+ .++++|+++|+++|+++++||+|+.+.. . ....+.|+++.|+||+ ++|.| +||+++++++++.+...
T Consensus 151 v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKa--laG~r-~G~v~~~~~li~~l~~~ 227 (346)
T TIGR03576 151 VVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKL--MDGPR-GGLLAGRKELVDKIKSV 227 (346)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchh--ccccc-eEEEEeCHHHHHHHHHh
Confidence 8 5789999999999999999999954321 1 1233678999999995 45778 49999999999999887
Q ss_pred hhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 150 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
...+. .+.+.+.+.++..++.... .+...+.+.++++.+.+.++.
T Consensus 228 ~~~~~-~s~~~~~~~aa~~aL~~~~-~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 228 GEQFG-LEAQAPLLAAVVRALEEFE-LSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred hcCcc-cCccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence 65211 1123333323322333222 233445556666666676764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=162.48 Aligned_cols=258 Identities=18% Similarity=0.236 Sum_probs=193.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC-----CceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-----RTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG 77 (324)
|...++.++++++|.|+...-.|-+....++ ..+.++.....+|+++|++.+++. +.++|+++.+.+..|
T Consensus 111 AN~~~i~~l~~~~dli~~D~lnHASiidG~r-----ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdG 185 (388)
T COG0156 111 ANLGLLSALLKKGDLIFSDELNHASIIDGIR-----LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDG 185 (388)
T ss_pred hHHHHHHHhcCCCcEEEEechhhhhHHHHHH-----hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCC
Confidence 5677888999999999999999999888773 356777777778999999999441 258889999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCC-CcCCC-C---------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTF-SPLVL-S---------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~-~---------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
.+.|+++|.+++++|+++++|||++ .+..- . .....+|++++|++|.||.. ||++.++..+.+.+
T Consensus 186 diApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~----Gg~v~g~~~~~d~L 261 (388)
T COG0156 186 DIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS----GGYIAGSAALIDYL 261 (388)
T ss_pred CcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc----CceeeCcHHHHHHH
Confidence 9999999999999999999999998 33321 1 11124589999999999876 59999999999999
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.....++ ..+.++.+..++..... +.....++++..++...+.+.++..++.+. |.
T Consensus 262 ~~~ar~~--ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~~~~~-~s------------------ 320 (388)
T COG0156 262 RNRARPF--IFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGLVLL-PS------------------ 320 (388)
T ss_pred HHhCCce--eccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCccC-CC------------------
Confidence 8765433 34444444444333333 333446777778888888877777666432 32
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
..+++.+.+.+...+..+.+.+.. . |.+...+.+|..+. ....+|+++. ...++
T Consensus 321 -~s~I~pv~~gd~~~a~~~s~~l~~---------~-Gi~v~~i~~PTVp~--------------gtarlRi~lt-a~ht~ 374 (388)
T COG0156 321 -ESPIIPVILGDEERALEASRALLE---------E-GIYVSAIRPPTVPK--------------GTARLRITLT-AAHTE 374 (388)
T ss_pred -CCCeeeeEeCCHHHHHHHHHHHHH---------C-CeeEeeecCCCCCC--------------CcceEEEEec-CCCCH
Confidence 466889999887888888888775 2 44455555665542 2367999999 99999
Q ss_pred HHHHHHHHHHHhh
Q 020548 304 QRWSQFEKALSRM 316 (324)
Q Consensus 304 ~~~~~l~~~l~~~ 316 (324)
++|+.+.++|..+
T Consensus 375 ~~I~~l~~~l~~~ 387 (388)
T COG0156 375 EDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=169.71 Aligned_cols=269 Identities=15% Similarity=0.112 Sum_probs=167.2
Q ss_pred chHHHHHHHccCCCC---------------EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCC
Q 020548 2 SAISSVLMQLCSSGG---------------HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd---------------~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~ 63 (324)
+|+..++.+++++|| +|+++.|.|..+...+.... ...|.++++++.+ |++++++++ +++
T Consensus 71 ~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~-~~~g~~~v~v~~~~~~d~~~le~ai-~~~ 148 (363)
T TIGR01437 71 AGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMV-RLGGGKVVEAGYANECSAEQLEAAI-TEK 148 (363)
T ss_pred HHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHH-HhcCCeEEEEcCCCCCCHHHHHHhc-Chh
Confidence 578889999999998 99999977776531111111 2268888887653 899999999 888
Q ss_pred ceEEE-EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 64 TKVLY-FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 64 ~~~v~-~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|++++ +++++||+|.+.|+++|.++|+++|+++++|++|+.-.......+.|++++|+||++++| + +|++++++++
T Consensus 149 t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~~~~~~g~D~~~~S~~K~l~gp--~-~G~l~~~~~~ 225 (363)
T TIGR01437 149 TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQKYYRLGADLVIYSGAKAIEGP--T-SGLVLGKKKY 225 (363)
T ss_pred ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchHHHHHcCCCEEEEeCCcccCCC--c-eEEEEEcHHH
Confidence 99766 577899999999999999999999999999999852222233557899999999988544 5 5999999888
Q ss_pred HHHHHHhhhhhhh-ccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHh
Q 020548 143 VNSMMDLHQGALM-LLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 143 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++.++....+... ...+.........++... ..-.+..+++.++++.+.+.|++.+ ..+..+.-. ....
T Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~--~~~~------ 297 (363)
T TIGR01437 226 IEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLKGVSASIVQDE--AGRD------ 297 (363)
T ss_pred HHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCC--CCCc------
Confidence 8877543331100 000000001111111111 1122334455567778999999874 344322100 0000
Q ss_pred ccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 220 NKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
-.-..+.|... ...+..++.+.|+. .+. . +...+ .....+.+|+++.
T Consensus 298 ----~~~~~v~~~~~~~g~~~~~l~~~L~~---~~~-~--------I~~r~---------------~~~~~~~~~l~~~- 345 (363)
T TIGR01437 298 ----IARAEIRFDESELGMTAADVVQALRQ---GEP-A--------IYTRG---------------YKANEGIIEIDPR- 345 (363)
T ss_pred ----CceEEEEEeccCCCCCHHHHHHHHhc---CCC-C--------EEEee---------------eeecCCeEEEEee-
Confidence 00123445542 12345677777763 110 0 11111 1223578999998
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
..+ +++++.+.++|.++
T Consensus 346 ~~~-~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 346 SVT-GGQLDIIVERIREI 362 (363)
T ss_pred cCC-HHHHHHHHHHHHHh
Confidence 655 77889999988764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=166.56 Aligned_cols=255 Identities=14% Similarity=0.134 Sum_probs=168.6
Q ss_pred hHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|+..++.++. ++||+|+++++.|.++...++ . .|.+++.++.+ |++++++++ ++++++|++.+++
T Consensus 88 a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~vi~~~~~ 161 (371)
T PRK13520 88 ANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAAD----M-LGVELRRAPLDDDYRVDVKAVEDLI-DDNTIGIVGIAGT 161 (371)
T ss_pred HHHHHHHHHHhhccCCCceEEecCcchHHHHHHHH----H-cCceEEEecCCCCCcCCHHHHHHHH-hhCCEEEEEEcCC
Confidence 4444544443 357999999999998776653 3 67888777653 899999999 7778888888889
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC----CCc--c---CCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV----LSP--A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~----~~~--~---~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|+||.+.|+++|.++|+++|+++++|++|+++. ... . ..++|.+..|.+|+..+ +.+.|++++.++++.+
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a-~~~~G~~~~~~~~~~~ 240 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA-PIPAGGILFRDESYLD 240 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc-cCCceEEEEcCHHHHH
Confidence 999999999999999999999999999995432 111 1 23689999999997644 4564345556777777
Q ss_pred HHHHhhhhhh---h--ccCC-C-CCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 145 SMMDLHQGAL---M--LLGP-T-MNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 145 ~l~~~~~~~~---~--~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
.+.....+.. . ..|. . .....+...+..+ ..++++.++..++++++.+.|++.++++..+.
T Consensus 241 ~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------- 310 (371)
T PRK13520 241 ALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP---------- 310 (371)
T ss_pred hhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC----------
Confidence 6642211100 0 0011 1 1112222233222 22456677789999999999998877532222
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
..+++.+.+++ ...+.+.|.. .|+ .++.. ..++.+|+|
T Consensus 311 ---------~~~~v~~~~~~---~~~v~~~L~~---~gi-~v~~~--------------------------~~~~~iRis 348 (371)
T PRK13520 311 ---------VLNIVAFDDPN---PDEVREKLRE---RGW-RVSVT--------------------------RCPEALRIV 348 (371)
T ss_pred ---------CceEEEEecCC---HHHHHHHHHH---CCc-eeccC--------------------------CCCCEEEEE
Confidence 24578888764 3455555553 222 11110 013679999
Q ss_pred eccCCCHHHHHHHHHHHHHhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++ ..+++++++.+.++|+++.
T Consensus 349 ~~-~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 349 CM-PHVTREHIENFLEDLKEVK 369 (371)
T ss_pred EE-CCCCHHHHHHHHHHHHHHh
Confidence 99 8888889999998887764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-20 Score=165.69 Aligned_cols=243 Identities=13% Similarity=0.161 Sum_probs=161.2
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
++||+|++++++|.++...++ ..|.+++.++.+ |++++++++ ++++..+++..++||||.+.|+++|.+
T Consensus 104 ~~g~~vl~~~~~h~~~~~~~~-----~~G~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~vv~~~~~~~tG~~~~~~~i~~ 177 (373)
T TIGR03812 104 KRTPNIIVPESAHFSFEKAAE-----MLGLELRYAPLDEDYTVDVKDVEDLI-DDNTIGIVGIAGTTELGQIDDIEELSK 177 (373)
T ss_pred CCCcEEEECCcchHHHHHHHH-----HcCCeEEEEeeCCCCCcCHHHHHHHH-hhCcEEEEEECCCCCCCccCCHHHHHH
Confidence 467999999999999877663 368888777653 899999998 666654454457899999999999999
Q ss_pred HHHhcCCEEEEcCCCCcCCC---------CccC---CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh
Q 020548 88 LAHDKGVTVVVDNTFSPLVL---------SPAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 155 (324)
Q Consensus 88 l~~~~~~~~ivD~~~~~~~~---------~~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~ 155 (324)
+|+++|+++++|++|+.+.. ...+ .+.|.+..|.||+..+ +.+.||+++.++++.+.+..... +..
T Consensus 178 l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~-~~~~G~~~~~~~~~~~~l~~~~~-~~~ 255 (373)
T TIGR03812 178 IALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLS-PIPAGGILFRSKSYLKYLSVDAP-YLT 255 (373)
T ss_pred HHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCC-cCCceEEEEeCHHHHhhhcccCc-ccC
Confidence 99999999999999953321 1222 2678999999996543 44544566778888777642211 100
Q ss_pred cc-----CCCCCH---HHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 156 LL-----GPTMNP---KVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 156 ~~-----~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
.. .++... ..+...+..+ ..++...++..++++++.+.|++.+.....+. .
T Consensus 256 ~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~ 316 (373)
T TIGR03812 256 VKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEP-------------------V 316 (373)
T ss_pred CCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC-------------------C
Confidence 00 011111 1122222222 22455677789999999999999876433222 2
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
.+++.+.+++. ..+.+.|.. .|+ .++. ...++++|+|++ ..+++++
T Consensus 317 ~~~v~~~~~~~---~~v~~~L~~---~gi-~v~~--------------------------~~~~~~iRis~~-~~~t~ed 362 (373)
T TIGR03812 317 LNIVAFEVDDP---EEVRKKLRD---RGW-YVSV--------------------------TRCPKALRIVVM-PHVTREH 362 (373)
T ss_pred ceEEEEEeCCH---HHHHHHHHH---CCc-eecc--------------------------CCCCCEEEEEEE-CCCCHHH
Confidence 45778888753 345555553 232 1110 002468999999 8888888
Q ss_pred HHHHHHHHHhh
Q 020548 306 WSQFEKALSRM 316 (324)
Q Consensus 306 ~~~l~~~l~~~ 316 (324)
++.+.++|+++
T Consensus 363 id~l~~~L~~~ 373 (373)
T TIGR03812 363 IEEFLEDLKEI 373 (373)
T ss_pred HHHHHHHHhhC
Confidence 99998888754
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=170.01 Aligned_cols=261 Identities=14% Similarity=0.115 Sum_probs=164.9
Q ss_pred chHHHHHHHccCCC---CEEEEcCCCchhHHHHHhhhcCcccceeE----EEecCC-----CHHHHHHhhh--cCCceEE
Q 020548 2 SAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS-----DHEMVNSAIV--QGRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~----~~~~~~-----d~~~l~~~l~--~~~~~~v 67 (324)
++++.++.++++++ +.|+++..+|++....+.....+ .|+++ ..++.+ +++++++.++ +++|++|
T Consensus 97 ~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv 175 (406)
T TIGR01814 97 INLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVI 175 (406)
T ss_pred HHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHh-cCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEE
Confidence 36777788776664 36888889999876666433333 57665 344332 6788888773 3689999
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHHH
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVN 144 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~ 144 (324)
++++++|.||.+.|+++|.++|+++|+++++|+++ .+ ...+..+.++|++++|.|||++ +|| +|.++.++.. .
T Consensus 176 ~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG---~~l~v~~~~~-~ 251 (406)
T TIGR01814 176 LLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG---AGAFVHEKHA-H 251 (406)
T ss_pred EEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC---eEEEEehhhh-h
Confidence 99999999999999999999999999999999998 22 3344456689999999999985 444 3544444332 2
Q ss_pred HHHHhhhhh-------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhC-C-
Q 020548 145 SMMDLHQGA-------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKL-G- 198 (324)
Q Consensus 145 ~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~-~- 198 (324)
.+.+...++ ..+..+++.....+.+...++ .++...++..+..+++.+.|++. +
T Consensus 252 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~ 331 (406)
T TIGR01814 252 TERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGG 331 (406)
T ss_pred hcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 232211100 000112333222222211221 23445556678888888888774 2
Q ss_pred ---CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 199 ---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 199 ---~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
.++..|.-+ ..++++++|.++ .....+.+.|.. .|+.. +
T Consensus 332 ~~~~~i~~~~~~---------------~~r~~~v~~~~~--~~~~~~~~~L~~---~gi~v-~----------------- 373 (406)
T TIGR01814 332 PPVLTIITPRDH---------------AQRGCQLSLTHP--VPGKAVFQALIK---RGVIG-D----------------- 373 (406)
T ss_pred CCceEEeCCCCh---------------hhcCCeEEEEec--CCHHHHHHHHHH---CCEEE-e-----------------
Confidence 344433210 024668888887 124456566553 23211 0
Q ss_pred CCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhh
Q 020548 276 ELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++.||+|+ + ..+++++++.+.++|+.+
T Consensus 374 ----------~~~~~~iRiS~~~-~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 374 ----------KREPSVIRVAPVP-LYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred ----------ccCCCeEEEechh-ccCCHHHHHHHHHHHHHH
Confidence 01136899999 7 789999999999888765
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-20 Score=164.17 Aligned_cols=280 Identities=15% Similarity=0.133 Sum_probs=178.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|.++...+. ..|.++.+++.+ |++++++.+ ++++++|+++ |
T Consensus 44 ~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~ 114 (352)
T cd00616 44 AALHLALRALGIGPGDEVIVPSFTFVATANAIL-----LLGATPVFVDIDPDTYNIDPELIEAAI-TPRTKAIIPV---H 114 (352)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCeEEEEecCCCcCCcCHHHHHHhc-CcCCeEEEEE---C
Confidence 4678888887 5899999999999999988774 267888777653 789999998 7889999976 4
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc--cCCCCcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP--ARLGADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~--~~~~~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
++|...|+++|.++|+++|+++|+|++|+ +..... .....|+.+.|++ |+++++ . ||+++.+ +++.+.++.
T Consensus 115 ~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~--~-gg~~~~~~~~~~~~~~~ 191 (352)
T cd00616 115 LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTG--E-GGAVVTNDEELAERARL 191 (352)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCccc--C-ceEEEECCHHHHHHHHH
Confidence 78999999999999999999999999983 222221 2223588898876 998543 3 5777654 678777765
Q ss_pred hhhhhhh---------c--cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHH
Q 020548 149 LHQGALM---------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 149 ~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~ 216 (324)
...+... . ....+....++..+..+..++...++..++.+++.+.|++.+ .++..+.-..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~-------- 263 (352)
T cd00616 192 LRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGV-------- 263 (352)
T ss_pred HHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCC--------
Confidence 5431100 0 112344444544444445566677777889999999998864 4443332000
Q ss_pred HHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceecccccccc--CCCCHHHHHhcCCCCCeE
Q 020548 217 SMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLV 292 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i 292 (324)
.....++.|.+++ ......+.+.|.. .|+ ..+.......+...... ............+..+.+
T Consensus 264 ------~~~~~~~~~~~~~~~~~~~~~v~~~L~~---~gI---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 331 (352)
T cd00616 264 ------KHSYHLYVIRLDPEAGESRDELIEALKE---AGI---ETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVL 331 (352)
T ss_pred ------ceeeEEEEEEECCcCCCCHHHHHHHHHH---CCC---CeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeE
Confidence 0134578888863 3456677777764 233 22211111100000000 000000000001124789
Q ss_pred EEEeccCCCHHHHHHHHHHHHH
Q 020548 293 RMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~ 314 (324)
|++++ ..+++++++.+.++|+
T Consensus 332 ~l~~~-~~~t~~di~~i~~~l~ 352 (352)
T cd00616 332 SLPLH-PSLTEEEIDRVIEALR 352 (352)
T ss_pred EccCC-CCCCHHHHHHHHHHhC
Confidence 99999 8999999999988763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=164.18 Aligned_cols=259 Identities=16% Similarity=0.146 Sum_probs=165.6
Q ss_pred chHHHHHHHcc----CCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC----SSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~----~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++.++. ++| ++|+++..+|+++...+... .. .|++++.++.+ |++++++++ ++++++|++++
T Consensus 70 ~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~ 146 (353)
T TIGR03235 70 ESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRAL-ER-NGFTVTYLPVDESGRIDVDELADAI-RPDTLLVSIMH 146 (353)
T ss_pred HHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhC-CCCCEEEEEEc
Confidence 35666777664 356 78999999999888777543 23 68888887753 899999999 77899999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH--HH
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS--MM 147 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~--l~ 147 (324)
++||||.+.|+++|.++|+++|+++++|+++ +....+..+.++|++++|++|+++++| .|+++.+++.... +.
T Consensus 147 ~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g---~g~l~~~~~~~~~~~~~ 223 (353)
T TIGR03235 147 VNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKG---IGALVIRKRGKPKAPLK 223 (353)
T ss_pred ccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCc---eEEEEEccCcccccccC
Confidence 9999999999999999999999999999997 333344445689999999999987655 4888777654322 22
Q ss_pred Hhhhh--h-hhccCCCCCHHHHHH---HhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 148 DLHQG--A-LMLLGPTMNPKVAFE---LSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 148 ~~~~~--~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+...+ . .....+++....... ++.. ....+...+++.++++.+.+.|++.+.++..+.-.
T Consensus 224 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~------------- 290 (353)
T TIGR03235 224 PIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAE------------- 290 (353)
T ss_pred ceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCccc-------------
Confidence 11110 0 001112222111111 1111 12345666778889999999998866665433200
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC----CeEEEEe
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSV 296 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iR~s~ 296 (324)
...+++.|.+++. +...+...|.. + +.++.|..++ ... ......+.++|.++ +.+|+|+
T Consensus 291 ---~~~~i~~~~~~~~-~~~~v~~~L~~----~-i~v~~g~~~~------~~~--~~~~~~l~~~g~~~~~~~~~~r~s~ 353 (353)
T TIGR03235 291 ---TIPHILNFSIDGV-NSEALIVNLRA----D-AAVSTGSACS------SSK--YEPSHVLQAMGLDTDRARGAIRFSW 353 (353)
T ss_pred ---ccCCEEEEEeCCc-CHHHHHHHHhC----C-eEEEchhhcC------CCC--CCCCHHHHHcCCCHHHhCccEEEeC
Confidence 1345788887642 34455555542 1 2444443321 111 11224556667753 6788875
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=165.69 Aligned_cols=275 Identities=16% Similarity=0.094 Sum_probs=172.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhc---CC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQ---GR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~---~~ 63 (324)
+|+..+++++++||| |++++|.|..+...+. ..|.+++.++. .|+++|++.+.. ++
T Consensus 104 ~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~-----~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~ 177 (460)
T PRK13238 104 AAEQILFPVLIKKGD-VVPSNYHFDTTRAHIE-----LNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAEN 177 (460)
T ss_pred HHHHHHHHHhCCCCC-EEccCCcccchHHHHH-----HcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCc
Confidence 477888889999999 9999999998887663 36777666653 378999999832 47
Q ss_pred ceEEEEecCCCCcc-cccC---hHHHHHHHHhcCCEEEEcCCC-Cc-CCC--------CccC---------CCCcEEEeC
Q 020548 64 TKVLYFESISNPTL-AVAN---IPELSRLAHDKGVTVVVDNTF-SP-LVL--------SPAR---------LGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~nptG-~~~~---~~~i~~l~~~~~~~~ivD~~~-~~-~~~--------~~~~---------~~~d~~~~S 120 (324)
+++|++++|+||+| .+.+ +++|+++|+++|+++|.|+++ .+ ..+ .... ...|.++.|
T Consensus 178 tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~S 257 (460)
T PRK13238 178 VPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMS 257 (460)
T ss_pred eeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEe
Confidence 99999999999998 7754 679999999999999999976 21 111 1111 137899999
Q ss_pred CccccccCCCeeEEEEEcC-hhHHHHHHHhhh---hhhhccCCCCC-HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 121 ISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ---GALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
.+|...++. ||+++.+ +++.+.++.... +..+.++.+.. +.+++..+.... -+...+...+++++|.+.|+
T Consensus 258 g~K~g~~~~---GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~-~~~~~~~~~~~~~~l~~~L~ 333 (460)
T PRK13238 258 AKKDAMVNI---GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM-DEDYLAYRIGQVEYLGEGLE 333 (460)
T ss_pred cccCCCCcc---eeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-ChHHHHHHHHHHHHHHHHHH
Confidence 999765543 6888877 688888876642 11122222222 112221222110 11333344556899999999
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH--------HHHHHHHHHhhccccccccccccCCccceec
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~ 267 (324)
+.|+.+..|. +|.++.+++... .....|+.+|-. +.|+.++..|.+...
T Consensus 334 ~~G~~~~~p~-------------------Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~--e~GV~~~~~~~f~~~-- 390 (460)
T PRK13238 334 EAGVPIQTPA-------------------GGHAVFVDAGKFLPHIPAEQFPAQALACELYL--EAGIRGVEIGSLLLG-- 390 (460)
T ss_pred HCCCCeEccC-------------------CceEEEEEchhcCCCCCCCCCchHHHHHHHHH--HcCeeeecccceecc--
Confidence 9998777666 556666666421 123556666553 355433333322111
Q ss_pred cccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 268 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
....... ...-+.+++||.+-+.--+++.++.+.++|..+.+
T Consensus 391 -~~~~~~~--------~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 391 -RDPKTGE--------QLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred -cCCCCcc--------ccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 0000000 00112489999998222355667888888877753
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=168.25 Aligned_cols=264 Identities=17% Similarity=0.186 Sum_probs=174.4
Q ss_pred hHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
++..++.++ .++||+|+++++.|+++...++.+... .|.+++.++.+ |++++++++ ++++++|++++| |+||
T Consensus 141 ~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-~G~~~~~v~~~~~~~d~~~l~~~i-~~~t~~v~l~~p-n~tG 217 (447)
T PRK00451 141 LAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKG-QGIEVVEVPYEDGVTDLEALEAAV-DDDTAAVVVQYP-NFFG 217 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHh-CCcEEEEecCCCCCCCHHHHHHhc-CCCeEEEEEECC-CCCC
Confidence 456666666 378999999999999999888654444 68888888765 899999999 889999999999 8999
Q ss_pred cccChHHHHHHHHhcCCEEEE--cCCCCcCCCCccCCCCcEEEeCCccc---cccCCCeeEEEEEcChhHHHHHHHh---
Q 020548 78 AVANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKF---ISGGADIIAGAVCGPANLVNSMMDL--- 149 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~---~~~~g~r~~G~i~~~~~~~~~l~~~--- 149 (324)
.+.|+++|.++|+++|+++++ |.+..+....+.+.++|++++|.+|+ +...|+++ ||++.++++.+.+...
T Consensus 218 ~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~-G~l~~~~~~~~~~~~~~~g 296 (447)
T PRK00451 218 VIEDLEEIAEIAHAGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPYL-GFFATRKKLVRQMPGRLVG 296 (447)
T ss_pred eeCCHHHHHHHHHHCCCEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCCCc-hHHHhhHHHHhhCCCCEee
Confidence 999999999999999999988 65543333445677999999976664 44445565 9998888887764211
Q ss_pred ----------------------hhhhhhccCCCCCH---HHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhCCC-ce
Q 020548 150 ----------------------HQGALMLLGPTMNP---KVAFELS--ERIPHLGLRMKEHCHRALIFARRMKKLGL-KV 201 (324)
Q Consensus 150 ----------------------~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~ 201 (324)
.....+...+.... ..++..+ .....+++..+++.++++++.+.|++.+. ++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~ 376 (447)
T PRK00451 297 ETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL 376 (447)
T ss_pred eecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe
Confidence 00000011111111 2222111 12234667778889999999999998853 44
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHH
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 281 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 281 (324)
. +. ....++.+.++. ...++.++|.. .|+.+ + .+...+.
T Consensus 377 ~-~~------------------~~~~~~~v~~~~--~~~~~~~~L~~---~gi~~---~-------~~~~~~~------- 415 (447)
T PRK00451 377 F-DG------------------PFFNEFVVRLPK--PAEEVNEALLE---KGILG---G-------YDLGRYY------- 415 (447)
T ss_pred c-CC------------------CeEEEEEEecCC--CHHHHHHHHHh---cCCCC---C-------ccccccc-------
Confidence 2 11 011123345431 24567777764 23211 0 0001000
Q ss_pred HHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 282 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 282 ~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+. .+.+|+|++ ..+++++++.+.++|+++
T Consensus 416 ---~~~-~~~~rvs~~-~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 416 ---PEL-GNHLLVCVT-EKRTKEDIDALVAALGEV 445 (447)
T ss_pred ---CCc-CCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 011 368999999 888999999999998765
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=166.35 Aligned_cols=259 Identities=16% Similarity=0.177 Sum_probs=163.5
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcC------c--ccceeEEEecCCCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFP------R--ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~------~--~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..+++....+| ++|+..++.|++.......... . ..+..+..++..|++++++.+ ++++++|+++++
T Consensus 114 ea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~aviiep~ 192 (398)
T PRK03244 114 EANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV-DDDTAAVFLEPI 192 (398)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh-cCCeEEEEEecc
Confidence 45666776555565 5778888899876433321100 0 012344556666899999998 778999999999
Q ss_pred CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 73 SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 73 ~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+||+|.+.| +++|.++|++||+++|+||+|+++... ......|++ +++|+++ +|.|+ |+++.+++
T Consensus 193 ~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~-~G~~i-g~~~~~~~ 268 (398)
T PRK03244 193 QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLG-GGLPI-GACLAFGP 268 (398)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhh-CCccc-EEEEEcHH
Confidence 999999986 889999999999999999999665321 112246765 5899998 58997 99999988
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
+++.+..... ..++.++.+.+.++...+..+. -+...++..++.+++.+.|++.+.... . .
T Consensus 269 ~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~--~---------------~ 329 (398)
T PRK03244 269 AADLLTPGLH-GSTFGGNPVACAAALAVLDTIA-SEGLLENAERLGEQLRAGIEALGHPLV--D---------------H 329 (398)
T ss_pred HHhhccCCCC-cCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCCce--e---------------e
Confidence 8877754322 1122222222222222222121 123455667778888999987643111 0 1
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
..+.|.+++++++.. ....+.+.+.. .|++ +.+ ...+.+|++++ ...
T Consensus 330 v~g~g~~~~i~~~~~-~~~~~~~~l~~---~Gv~-----------~~~-----------------~~~~~iR~~p~-~~~ 376 (398)
T PRK03244 330 VRGRGLLLGIVLTAP-VAKAVEAAARE---AGFL-----------VNA-----------------VAPDVIRLAPP-LII 376 (398)
T ss_pred EeeccEEEEEEEecc-HHHHHHHHHHH---CCeE-----------Eee-----------------cCCCEEEEECC-CcC
Confidence 114688999999642 45667766663 3331 111 01378999988 655
Q ss_pred HHHHHHHHHHHHHhhh
Q 020548 302 LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~~ 317 (324)
++++++.+.++|+++-
T Consensus 377 t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 377 TDAQVDAFVAALPAIL 392 (398)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5666666666665543
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=162.85 Aligned_cols=256 Identities=16% Similarity=0.229 Sum_probs=165.5
Q ss_pred chHHHHHHHccC---------CC-CEEEEcCCCchhHHHHHhhh---------cCcccceeEEEecCCCHHHHHHhhhcC
Q 020548 2 SAISSVLMQLCS---------SG-GHVVAARTLYGGTHALLTHF---------FPRACNITTTFVDISDHEMVNSAIVQG 62 (324)
Q Consensus 2 ~ai~~~~~~~~~---------~g-d~vl~~~p~y~~~~~~~~~~---------~~~~~g~~~~~~~~~d~~~l~~~l~~~ 62 (324)
+|+..++..+.. +| ++|++....|++....+... ... ....+..++..|++++++.+ .+
T Consensus 109 ~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~i-~~ 186 (401)
T PRK00854 109 EAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGP-FTPGFRVVPFGDAEALEAAI-TP 186 (401)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCC-CCCCeEEeCCCCHHHHHHHh-CC
Confidence 356666665421 24 68888888887754332111 000 12345566677999999999 78
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCe
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADI 131 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r 131 (324)
++++|++++|+||+|.+.| +++|+++|++||+++|+||+|.++...+ .....|+++ ++|++++..++
T Consensus 187 ~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~--~~K~l~gg~~~ 264 (401)
T PRK00854 187 NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTL--IGKALSGGFYP 264 (401)
T ss_pred CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEE--ecccccCCccC
Confidence 8999999999999999986 9999999999999999999997664432 223568887 46999885578
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLEDH 209 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~ 209 (324)
+ |++++++++++.+..... ..+++ + .+..++..+..++.+. ...++++++.+++.+.|++.+.... .
T Consensus 265 i-g~v~~~~~~~~~l~~~~~-~~t~~-~--~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~---- 333 (401)
T PRK00854 265 V-SAVLSNSEVLGVLKPGQH-GSTFG-G--NPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSNIV--R---- 333 (401)
T ss_pred e-EEEEEcHHHHhcccCCCC-CCCCC-c--CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhccCce--E----
Confidence 6 999999998887754322 11122 2 3333333333333332 2456678888999999988654211 0
Q ss_pred chhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
...+.|.++.+.+. +......+.+.+.. .|+.. .+ ..
T Consensus 334 -----------~~~g~g~~~~i~~~~~~~~~~~~~~~L~~---~GV~v-----------~~-----------------~~ 371 (401)
T PRK00854 334 -----------EVRGRGLMLAVELEPEAGGARQYCEALKE---RGLLA-----------KD-----------------TH 371 (401)
T ss_pred -----------EEeccceEEEEEEecCchhHHHHHHHHHH---CCeEE-----------ec-----------------CC
Confidence 01145778888774 33346677777764 33311 00 11
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+|+++. ...+++.++.+.+.|+.
T Consensus 372 ~~~lR~~p~-~~~t~e~i~~~i~~l~~ 397 (401)
T PRK00854 372 DHTIRLAPP-LVITREQVDWALEQIAK 397 (401)
T ss_pred CCEEEEeCC-cccCHHHHHHHHHHHHH
Confidence 368999998 66666666666665554
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=163.52 Aligned_cols=221 Identities=18% Similarity=0.214 Sum_probs=145.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh-cCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++++|||+|+++.|+|+++....... ... .|.++..++. .|++++++++.+.++++|+++.++
T Consensus 98 ~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~- 175 (416)
T PRK00011 98 QANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA- 175 (416)
T ss_pred HHHHHHHHHhcCCCCEEEEeccccCCcccccccccccc-ceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc-
Confidence 4677888888999999999999998754322111 111 3556666553 279999999943578999887544
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
+|...|+++|.++|+++|+++|+|++| .+.. ..+.. +.|++++|+||+++ |.+ ||+++.+ +++.+.+.
T Consensus 176 -~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~--g~~-gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 176 -YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLR--GPR-GGLILTNDEELAKKIN 250 (416)
T ss_pred -CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCC--CCC-ceEEEeCCHHHHHHHH
Confidence 456679999999999999999999997 3332 12334 68999999999884 455 5999885 68888887
Q ss_pred HhhhhhhhccCCCCCHHHHH-HHh-cCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAF-ELS-ERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ....+......+. .+. ..+ ..++.+.+++.++++++.+.|++.|+++. +. . .
T Consensus 251 ~~~~~~-~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~--~---------------~ 311 (416)
T PRK00011 251 SAVFPG-IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVV-SG--G---------------T 311 (416)
T ss_pred HHhCcc-ccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeee-ec--C---------------C
Confidence 654411 1111111122221 111 111 23566778889999999999999876543 21 0 1
Q ss_pred cceEEEEEeCCH-HHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETE-EKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~-~~~~~~~~~l~~ 248 (324)
.++++++.+++. .....+.+.|..
T Consensus 312 ~~~~~~i~~~~~~~~~~~~~~~L~~ 336 (416)
T PRK00011 312 DNHLVLVDLRSKGLTGKEAEAALEE 336 (416)
T ss_pred CCeEEEEeCcccCCCHHHHHHHHHH
Confidence 246888888522 134456666653
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=162.74 Aligned_cols=244 Identities=13% Similarity=0.157 Sum_probs=154.8
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc-----ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR-----ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~-----~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
++|+..+..|++........... .++ ..+..++..|++++++.+ ++++++|++++++||+|.+.+ ++
T Consensus 132 ~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~viiep~~~~~G~~~~~~~~l~ 210 (396)
T PRK04073 132 AEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAI-TPNTAAFLVEPIQGEAGINIPPEGFLK 210 (396)
T ss_pred CEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhc-ccCeEEEEEcCccCCCCCccCCHHHHH
Confidence 78888888787644222111000 000 113455666899999999 788999999999999999975 78
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
+|.++|+++|+++|+||+|.++... ......|+++ ++|.++++++|+ |++++++++++.+..... ..++
T Consensus 211 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~--~sK~lg~gg~~i-g~~~~~~~i~~~~~~~~~-~~t~ 286 (396)
T PRK04073 211 AARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYI--LGKALGGGVFPI-SCVAANRDILGVFTPGSH-GSTF 286 (396)
T ss_pred HHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEE--ecccccCCCCcc-eEEEEcHHHHhhhcCCCC-CCCC
Confidence 9999999999999999999766421 1222456665 799999988997 999999998888754332 1122
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
+++.+.+.++...+..+.. +...++..++++++.+.|++.+..... ...+.|.++.++++.
T Consensus 287 ~~~~~~~aaa~aaL~~~~~-~~l~~~~~~~~~~l~~~L~~l~~~~i~-----------------~~~~~g~~~~~~~~~- 347 (396)
T PRK04073 287 GGNPLACAVSIAALEVLEE-EKLPERSLELGEYFKEQLKEIDNPMIK-----------------EVRGRGLFIGVELNE- 347 (396)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhhcCCccc-----------------ceecceEEEEEEecc-
Confidence 3332222222222221111 133455677788888888876431110 011467888888863
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
....+.+.+.. .|++. .+ ..+++||+++. ...++++++.+.++|+++
T Consensus 348 -~~~~~~~~l~~---~Gv~~-----------~~-----------------~~~~~iRi~p~-l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 348 -PARPYCEALKE---EGLLC-----------KE-----------------THETVIRFAPP-LVITKEELDWAFEKIKAV 394 (396)
T ss_pred -hHHHHHHHHHH---CCeEE-----------ec-----------------CCCCEEEEECC-cccCHHHHHHHHHHHHHH
Confidence 34567776653 33311 11 11368999987 666777677766666543
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-20 Score=158.59 Aligned_cols=133 Identities=19% Similarity=0.251 Sum_probs=116.2
Q ss_pred chHHHHHHHcc-CCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC-SSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|++++++.+. ..+| +|+..+..|+.....++.+.. .|.++++++.. |++.+++.+ +++|++|.+.+
T Consensus 113 Es~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~--~g~~Vt~lpv~~~~~~d~~~~~~~i-~~~T~lv~I~~ 189 (428)
T KOG1549|consen 113 ESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQE--EGLEVTYLPVEDSGLVDISKLREAI-RSKTRLVSIMH 189 (428)
T ss_pred HHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHh--cCeEEEEeccCccccccHHHHHHhc-CCCceEEEEEe
Confidence 46788888763 3566 999999999999998876655 47999998875 899999999 99999999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++|.+|.++|+++|.++|+++|+.+++|.+| +....+..++++|++..|.|||||++| + |+++.++
T Consensus 190 Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~--i-GaLYvr~ 257 (428)
T KOG1549|consen 190 VNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPG--I-GALYVRR 257 (428)
T ss_pred cccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCc--c-eEEEEcc
Confidence 9999999999999999999999999999998 445567788899999999999999988 4 9998775
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=155.08 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=172.8
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+++|.|+.....|.+....++.. ....+.++..++.+|+++|++.++. .+.++|+++...++.|.+.|+++|.++|+
T Consensus 198 ~~~d~i~~D~~~HaSI~dG~~ls-~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~ 276 (476)
T PLN02955 198 NEKVAIFSDALNHASIIDGVRLA-ERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRK 276 (476)
T ss_pred CCCcEEEEeccchHHHHHHHHhc-cccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence 45678888888898888877422 1112467777788899999998843 34578888999999999999999999999
Q ss_pred hcCCEEEEcCCCCcCCCCc----------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCC
Q 020548 91 DKGVTVVVDNTFSPLVLSP----------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 160 (324)
Q Consensus 91 ~~~~~~ivD~~~~~~~~~~----------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~ 160 (324)
+||+++|+||+++.+...+ ..-+.|++++|++|.+|.. ||++++++++++.++.....+ .+.++.
T Consensus 277 ~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~----GGfi~gs~~~~~~l~~~~~~~-ifStal 351 (476)
T PLN02955 277 KYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH----GGFIACSKKWKQLIQSRGRSF-IFSTAI 351 (476)
T ss_pred HcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc----CceeecHHHHHHHHHHhCCCC-eecccc
Confidence 9999999999985443221 1125789999999999876 599999999998888655422 222333
Q ss_pred CCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 161 MNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
+.+..++ .+..+. .-+.+++++.++.+++.+. .|+.+ .++++.+.+.+..
T Consensus 352 pp~~aaa-~laal~l~~~~~~~r~~L~~n~~~fr~~---~G~~~-----------------------~sPI~pI~ig~~~ 404 (476)
T PLN02955 352 PVPMAAA-AYAAVVVARKEKWRRKAIWERVKEFKAL---SGVDI-----------------------SSPIISLVVGNQE 404 (476)
T ss_pred cHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCC-----------------------CCCEEEEEeCCHH
Confidence 3222222 222221 2224455566677766652 23321 2458899998878
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
.+..+.+.|.. .| -+.+.+.+|..+. ....+|+++. ...++++++.+.++|..+.
T Consensus 405 ~a~~~~~~L~~---~G-------i~v~~i~yPtVP~--------------g~~rLRi~ls-A~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 405 KALKASRYLLK---SG-------FHVMAIRPPTVPP--------------NSCRLRVTLS-AAHTTEDVKKLITALSSCL 459 (476)
T ss_pred HHHHHHHHHHH---CC-------CEEEEECCCCCCC--------------CCceEEEeeC-CCCCHHHHHHHHHHHHHHH
Confidence 88888888874 33 3344455565432 2357999999 9999999999999998775
Q ss_pred hc
Q 020548 318 DS 319 (324)
Q Consensus 318 ~~ 319 (324)
+.
T Consensus 460 ~~ 461 (476)
T PLN02955 460 DF 461 (476)
T ss_pred hh
Confidence 43
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=164.17 Aligned_cols=261 Identities=14% Similarity=0.177 Sum_probs=161.8
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCC-----------CHHHHHHhhh
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDIS-----------DHEMVNSAIV 60 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~-----------d~~~l~~~l~ 60 (324)
+|+..++..+ ..++|+|++.++.|++........... ....++..++.+ |++++++.+.
T Consensus 107 ea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 186 (413)
T cd00610 107 EAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE 186 (413)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence 3566666654 256899999999999865544222111 012234555555 7899999884
Q ss_pred c--CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCcccccc
Q 020548 61 Q--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISG 127 (324)
Q Consensus 61 ~--~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~ 127 (324)
. ++++++++++.+|++|...+ +++|.++|+++|+++|+||+|+++... ......|+ .|++|++++
T Consensus 187 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~--~t~sK~l~~ 264 (413)
T cd00610 187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI--VTLGKGLGG 264 (413)
T ss_pred cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCe--EEEcccccC
Confidence 3 36889999999999999876 999999999999999999999665211 11223454 468899988
Q ss_pred CCCeeEEEEEcChhHHHHH--HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 128 GADIIAGAVCGPANLVNSM--MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 128 ~g~r~~G~i~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
|.|+ |++++++++++.+ ..... ..+..++.+.+.++...++.+.. ....++..++.+++.+.|++.......+.
T Consensus 265 -g~~~-g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~a~~a~l~~l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 340 (413)
T cd00610 265 -GLPL-GAVLGREEIMDAFPAGPGLH-GGTFGGNPLACAAALAVLEVLEE-EGLLENAAELGEYLRERLRELAEKHPLVG 340 (413)
T ss_pred -cccc-EEEEEcHHHHHhhccCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCcEE
Confidence 7997 9999999888886 22211 11122222222222222221111 23456667778888888876532110011
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCH--------HHHHHHHHHhhccccccccccccCCccceeccccccccCCC
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 277 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 277 (324)
...+.|+++++.+++. .....+.+.+.. .|+ .+.|.
T Consensus 341 ---------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gv-----------~v~~~------- 384 (413)
T cd00610 341 ---------------DVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE---RGL-----------LLRPS------- 384 (413)
T ss_pred ---------------EeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH---CCe-----------EEeec-------
Confidence 0114688999998642 456677777664 333 11111
Q ss_pred CHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 278 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 278 ~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
..+.+|+++. ...+++.++.+.++++.
T Consensus 385 ----------~~~~lR~~~~-~~~t~~~i~~~~~~l~~ 411 (413)
T cd00610 385 ----------GGNVIRLLPP-LIITEEEIDEGLDALDE 411 (413)
T ss_pred ----------CCCEEEEECC-CcCCHHHHHHHHHHHHH
Confidence 1367999999 77666666666666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=156.25 Aligned_cols=252 Identities=14% Similarity=0.132 Sum_probs=158.8
Q ss_pred CCEEEEcCCCchhHHHHHh--hhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 15 GGHVVAARTLYGGTHALLT--HFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~--~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
||+|+..++..+++...-. .+... ......++. .|.+++++.+ +++++.|+++..+|- +...|+++|+
T Consensus 166 gd~i~~l~l~~GGHlthg~~~n~~~~--~~~~~~y~vd~~~g~iD~d~l~~~~-~~~~plvii~g~S~~-~~~~dl~~i~ 241 (493)
T PRK13580 166 NQRLLGMSLDSGGHLTHGFRPNISGK--MFHQRSYGVDPDTGLLDYDEIAALA-REFKPLILVAGYSAY-PRRVNFAKLR 241 (493)
T ss_pred CCEEEeecCCCCCeeecCcccchhhh--eeeeEecccCcccCccCHHHHHHHH-hhcCCEEEEeCcccc-CCCcCHHHHH
Confidence 8999999877765533210 11111 122222222 2899999999 778888888888887 5577999999
Q ss_pred HHHHhcCCEEEEcCCC-CcCCC--------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 87 RLAHDKGVTVVVDNTF-SPLVL--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~-~~~~~--------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
++|+++|+++++|+++ .++.. ++. .++|++++|+||++.||. ||++++++++.+.+.....+ ..
T Consensus 242 eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P~---i~ 314 (493)
T PRK13580 242 EIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCPL---VL 314 (493)
T ss_pred HHHHHcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCCc---cc
Confidence 9999999999999998 44321 222 268999999999996554 79999999988888544331 33
Q ss_pred CCCCCHHHHHHH--hcCcc--cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 158 GPTMNPKVAFEL--SERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 158 ~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
++.+.+..++.+ +.... ....+.++..+|++.|.+.|++.|+.+.... ..+.++.+.+
T Consensus 315 gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~gg------------------TdshIV~V~l 376 (493)
T PRK13580 315 GGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGG------------------TDNHLVLIDV 376 (493)
T ss_pred CCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCC------------------CCCCEEEEEe
Confidence 333333333222 21111 2345777889999999999999998654222 1245889999
Q ss_pred CCHHHH-HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC----HHHHHHH
Q 020548 234 ETEEKA-NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQ 308 (324)
Q Consensus 234 ~~~~~~-~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~----~~~~~~~ 308 (324)
.+.... ..+.+.|.. .|+ +...+..|..+.. ......||++.. ..+ .+++++.
T Consensus 377 g~~~~~g~~a~~~L~e---~GI-------~vn~i~~Ptvp~g-----------~~~~srLRIg~~-A~ttrg~teedi~~ 434 (493)
T PRK13580 377 TSFGLTGRQAESALLD---AGI-------VTNRNSIPSDPNG-----------AWYTSGIRLGTP-ALTTLGMGSDEMDE 434 (493)
T ss_pred CCHHHHHHHHHHHHHH---CCe-------EEccccCCCCCCC-----------CCCCceEEeccc-hhhhcCCCHHHHHH
Confidence 754433 344445553 232 2233334443221 112467999987 532 3566777
Q ss_pred HHHHHHhhh
Q 020548 309 FEKALSRMQ 317 (324)
Q Consensus 309 l~~~l~~~~ 317 (324)
+.+++..+.
T Consensus 435 iad~l~~~l 443 (493)
T PRK13580 435 VAELIVKVL 443 (493)
T ss_pred HHHHHHHHH
Confidence 776665543
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=158.27 Aligned_cols=245 Identities=15% Similarity=0.178 Sum_probs=152.9
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc----C
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----N 81 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~----~ 81 (324)
+||+|++++|+|+++.......... .......+++.+|++++++.+ ++++++|++++++|++|... +
T Consensus 114 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~p~~~~~g~~~~~~~~ 192 (379)
T TIGR00707 114 EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAI-DDETAAVIVEPIQGEGGVNPASAEF 192 (379)
T ss_pred CCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHh-hhCeeEEEEEccccCCCCccCCHHH
Confidence 3799999999998765443211100 011123344445899999999 77899999988888888653 3
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 154 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~ 154 (324)
+++|.++|+++|+++|+||+|.++... + .....|++ ++||.++ +|+|+ ||+++++++++.+..... ..
T Consensus 193 l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~ri-G~~~~~~~~~~~~~~~~~-~~ 267 (379)
T TIGR00707 193 LKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPI-GATLAKEEVAEAFTPGDH-GS 267 (379)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEccccc-CCccc-EEEEEcHHHHhhhcCCCC-CC
Confidence 789999999999999999999666432 1 11234554 6899998 79997 999999998888865432 11
Q ss_pred hccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 155 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+.++.+.+.++...+..+. .....+++.++++.+.+.|++.+........ .+.|.++++.++
T Consensus 268 ~~~~~~~~~~aa~aaL~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~~g~~~~~~~~ 330 (379)
T TIGR00707 268 TFGGNPLACAAALAVLEVIE-KERLLENVKEKGDYFKERLEELGKNYPNKEV----------------RGKGLMLGIELE 330 (379)
T ss_pred CCCCCHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc----------------ccCceEEEEEec
Confidence 12222233333322332221 1234566677888888888876432211110 125778999986
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+. ...+.+.+.. .|+. +.|. ..+++|+|++ ...+++.++.+.++|+
T Consensus 331 ~~--~~~~~~~l~~---~Gv~-----------v~~~-----------------~~~~lRi~~~-~~~t~~~i~~~~~~l~ 376 (379)
T TIGR00707 331 AP--CKDIVKKALE---KGLL-----------VNCA-----------------GPKVLRFLPP-LIITKEEIDEAVSALE 376 (379)
T ss_pred Cc--HHHHHHHHHH---CCcE-----------EeeC-----------------CCCEEEEECC-CcCCHHHHHHHHHHHH
Confidence 42 4566666663 3331 1111 1378999988 6556665666665554
Q ss_pred h
Q 020548 315 R 315 (324)
Q Consensus 315 ~ 315 (324)
+
T Consensus 377 ~ 377 (379)
T TIGR00707 377 E 377 (379)
T ss_pred H
Confidence 3
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-19 Score=157.19 Aligned_cols=279 Identities=17% Similarity=0.197 Sum_probs=176.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc----CCceEEEEe
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~----~~~~~v~~~ 70 (324)
+|+..++.++ +++||+|++++++|.++...+. ..|.++++++.+ |++++++++ + +++++|++.
T Consensus 55 ~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~~t~~v~~~ 128 (380)
T TIGR03588 55 SALHIACLALGVGPGDRVWTTPITFVATANCAL-----YCGAKVDFVDIDPDTGNIDEDALEKKL-AAAKGKLPKAIVPV 128 (380)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHHh-hcccCCCceEEEEe
Confidence 5788888888 7899999999999999877663 378888888762 789999999 6 688998854
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCC----cEEEeCCc--cccccCCCeeEEEEE-cChhH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA----DVVVHSIS--KFISGGADIIAGAVC-GPANL 142 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~----d~~~~S~s--K~~~~~g~r~~G~i~-~~~~~ 142 (324)
|++|...++++|.++|+++|+++|+|++++ +...+....+. |+.++|+| |+++.+. ||+++ .++++
T Consensus 129 ---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~---GG~v~~~~~~~ 202 (380)
T TIGR03588 129 ---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAE---GGAVTTNDEEL 202 (380)
T ss_pred ---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccC---ceEEEECCHHH
Confidence 578999999999999999999999999983 22233333345 99999987 8886543 57665 56778
Q ss_pred HHHHHHhhhhhhh-------------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-c
Q 020548 143 VNSMMDLHQGALM-------------------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-K 200 (324)
Q Consensus 143 ~~~l~~~~~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~ 200 (324)
.+.++....+... ..| ..+....++..+.++..++...++.+++++++.+.|...+. .
T Consensus 203 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 203 AERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred HHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 8877654331000 001 12344555554445566777778888999999999988764 2
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccc---cC
Q 020548 201 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST---SS 275 (324)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~ 275 (324)
...+..... ....++.+.++. .....++.+.|.. .|+ .+... +..+...|.... ..
T Consensus 283 ~~~~~~~~~--------------~~~~~~~i~~~~~~~~~r~~l~~~L~~---~gI-~~~~~-~~~~~~~~~~~~~~~~~ 343 (380)
T TIGR03588 283 PLTIPLGSK--------------SAWHLYPILLDQEFGCTRKEVFEALRA---AGI-GVQVH-YIPVHLQPYYRQGFGDG 343 (380)
T ss_pred CCCCCCCCE--------------eEEEEEEEEECCcCCCCHHHHHHHHHH---CCC-CcccC-CcccccChhhhccCCcC
Confidence 221110000 011233344431 1245666666664 333 22211 001101111000 00
Q ss_pred CCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 276 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++... .+..+.+++.++ ...++++++.+.++++++
T Consensus 344 ~~p~a~----~~~~~~l~lP~~-~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 344 DLPSAE----NFYLAEISLPLH-PALTLEQQQRVVETLRKV 379 (380)
T ss_pred CCcHHH----HHHhceEEcCCC-CCCCHHHHHHHHHHHHHh
Confidence 011111 122478999999 777788888888888754
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=159.93 Aligned_cols=222 Identities=15% Similarity=0.111 Sum_probs=153.1
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC------CceEEEEecCCCCcccccChHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~------~~~~v~~~~~~nptG~~~~~~~ 84 (324)
+.|++++++|.++...+. ..|.+++.++. .|++++++++ ++ ++++|++++++||||.+.|+++
T Consensus 96 ~~v~~~~~~h~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~ 169 (345)
T cd06450 96 LVIVCSDQAHVSVEKAAA-----YLDVKVRLVPVDEDGRMDPEALEAAI-DEDKAEGLNPIMVVATAGTTDTGAIDPLEE 169 (345)
T ss_pred eEEEEcCcchhHHHHHHH-----HHhcCeEEeeeCCCCCcCHHHHHHHH-HHHHHCCCCcEEEEEecccCCCCCCCCHHH
Confidence 478889999999887763 24677777664 2899999998 54 7889999999999999999999
Q ss_pred HHHHHHhcCCEEEEcCCCCcCCC--Ccc-----C-CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 85 LSRLAHDKGVTVVVDNTFSPLVL--SPA-----R-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 85 i~~l~~~~~~~~ivD~~~~~~~~--~~~-----~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
|+++|+++|+++++|++|+.+.. ... . .++|++..|+||++++| .++ |+++.+
T Consensus 170 i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~-g~~~~~----------------- 230 (345)
T cd06450 170 IADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGC-SAVLVR----------------- 230 (345)
T ss_pred HHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cch-HHHHHH-----------------
Confidence 99999999999999999944321 111 1 26899999999988653 453 776554
Q ss_pred cCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 157 LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
....+..+. ....++.++++..++++++.+.|++.+. .+..+. .++++.|.+
T Consensus 231 ------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~iv~f~~ 285 (345)
T cd06450 231 ------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-------------------NLSLVCFRL 285 (345)
T ss_pred ------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------------ceeEEEEEE
Confidence 111111111 1234566777788899999999998753 443322 356888888
Q ss_pred CC----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC-CHHHHHHH
Q 020548 234 ET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQ 308 (324)
Q Consensus 234 ~~----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~-~~~~~~~~ 308 (324)
++ ......+.+.+.. .|.+. .+... .+ .+.++|+|++ .. ++.++++.
T Consensus 286 ~~~~~~~~~~~~i~~~L~~---~g~~~-----------~~~~~------------~~-~~~~lRis~~-~~~~t~~di~~ 337 (345)
T cd06450 286 KPSVKLDELNYDLSDRLNE---RGGWH-----------VPATT------------LG-GPNVLRFVVT-NPLTTRDDADA 337 (345)
T ss_pred CCcchhhHHHHHHHHHHHh---cCCEE-----------EEeeE------------EC-CeEEEEEEec-CCCCCHHHHHH
Confidence 75 2455667777764 21100 11110 01 2468999999 75 48888888
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
+.++|++
T Consensus 338 l~~~l~~ 344 (345)
T cd06450 338 LLEDIER 344 (345)
T ss_pred HHHHHHh
Confidence 8888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=153.09 Aligned_cols=282 Identities=16% Similarity=0.189 Sum_probs=178.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ ++|||+|++++++|.++...+. . .|.++++++.+ |++++++++ ++++++|+ |+|
T Consensus 57 ~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~----~-~G~~~v~vd~d~~~~~~d~~~le~~i-~~~tk~Ii---p~~ 127 (376)
T TIGR02379 57 AALEMAALLLDIQPGDEVIMPSYTFVSTANAFV----L-RGAKIVFVDIRPDTMNIDETLIESAI-THRTKAIV---PVH 127 (376)
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH----H-cCCEEEEEecCCCcCCCCHHHHHHhc-CcCceEEE---EeC
Confidence 5777788877 8999999999999999887773 3 68888888764 788999999 78899987 567
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CCccCCC--CcEEEeCCc--cccccCCCeeEEEEE-cChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSIS--KFISGGADIIAGAVC-GPANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~~~~--~d~~~~S~s--K~~~~~g~r~~G~i~-~~~~~~~~l~~ 148 (324)
|+|...|+++|.++|+++|+++|+|++|+... .+....+ .|+.++|++ |.+.. |.+ ||+++ .++++.+.++.
T Consensus 128 ~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~-g~~-gG~v~~~~~~~~~~~~~ 205 (376)
T TIGR02379 128 YAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTS-GGE-GGALLINDQAFIERAEI 205 (376)
T ss_pred CCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCcc-cCC-ceEEEECCHHHHHHHHH
Confidence 89999999999999999999999999984332 3222233 377777774 55543 445 58765 45789998887
Q ss_pred hhhhhhh---------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCC
Q 020548 149 LHQGALM---------------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 209 (324)
Q Consensus 149 ~~~~~~~---------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~ 209 (324)
...+... ..| ..+....++..+.++..++...++.++++++..+.|+.... ....|..+..
T Consensus 206 ~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~ 285 (376)
T TIGR02379 206 IREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNG 285 (376)
T ss_pred HHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCC
Confidence 7642100 012 12445566666667777888888888888888888876542 1222332211
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccccc----CCCCHHHHHhc
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS----SELNAEEKALA 285 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ 285 (324)
.. ..-.++++.++...+..++.+.|.. .|+ .... .+..+...|....+ ...+..+
T Consensus 286 ~~------------~~~~~~~i~~~~~~~r~~l~~~L~~---~gI-~~~~-~~~p~~~~~~~~~~~~~~~~~p~~~---- 344 (376)
T TIGR02379 286 CQ------------HNAHMFYIKLKDEDDRNELIKYLKE---QEI-MAVF-HYVPLHSSPAGRYFGRFHGEDIYTT---- 344 (376)
T ss_pred Ce------------eeeEEEEEEECCcCCHHHHHHHHHH---CCC-Cccc-cCcCCCcchhHHhhCCCCCCChHHH----
Confidence 11 0113556777643345677777774 343 2111 11111111110000 0111111
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+..+.+.+=++ ..-+++.++.+.++++++
T Consensus 345 ~~~~~~l~LP~~-~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 345 KESERLVRLPLY-YGLSKEDQARVIQTICDY 374 (376)
T ss_pred HHHhceEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 112466777777 666777788888887664
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=154.66 Aligned_cols=278 Identities=17% Similarity=0.168 Sum_probs=176.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|++++++|.++...+. ..|.++++++.+ |++++++++ ++++++|+ |.|
T Consensus 59 ~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~v~vd~~~~~~~~d~~~l~~~i-~~~tkav~---~~~ 129 (379)
T PRK11658 59 AGMHITLMALGIGPGDEVITPSLTWVSTLNMIV-----LLGATPVMVDVDRDTLMVTPEAIEAAI-TPRTKAII---PVH 129 (379)
T ss_pred HHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHhc-ccCCeEEE---EeC
Confidence 5788888888 7999999999999999987763 378888888753 789999999 78899988 556
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCC---ccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS---PARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~---~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~ 149 (324)
++|...|+++|.++|+++|+++|+|++|+ +.... ....+.++..++.+|.+. ++. ||+++. ++++.+.++..
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~--~g~-GG~v~~~~~~~~~~~~~~ 206 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNIT--CAE-GGLVVTDDDELADRLRSL 206 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCc--ccC-ceEEEECCHHHHHHHHHH
Confidence 79999999999999999999999999983 33322 223355555555567664 445 688875 57888888765
Q ss_pred hhhhhh------------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCc-eeCCCCCC
Q 020548 150 HQGALM------------------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK-VLYPGLED 208 (324)
Q Consensus 150 ~~~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~p~~~~ 208 (324)
..+... ..| ..+..+.+++.+.++..+++..++.+++++++.+.|++.+.. +..|....
T Consensus 207 ~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~ 286 (379)
T PRK11658 207 KFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPH 286 (379)
T ss_pred HHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCC
Confidence 431000 011 224455566655566667777788888888999999877642 22222110
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC---HHHHHHHHHHhhccccccccccccCCcc-ceecccccc---ccCCCCHHH
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYE-TLMSCSGSS---TSSELNAEE 281 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~~~~~~g~~~-~~~~~~~~~---~~~~~~~~~ 281 (324)
. ....++.+.++. ......+.+.|.. .|+ ..+... .+...|... ....++..+
T Consensus 287 --~------------~~~~~~~~~~~~~~~~~~r~~~~~~L~~---~gI---~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 346 (379)
T PRK11658 287 --Q------------HAWHLFIIRVDEERCGISRDALMEALKE---RGI---GTGLHFRAAHTQKYYRERFPTLSLPNTE 346 (379)
T ss_pred --c------------eeEEEEEEEECCccccCCHHHHHHHHHH---CCC---CCcccCcCcccChhhhccCCCCCChHHH
Confidence 0 011345566542 2245677777764 343 122111 111111100 000111111
Q ss_pred HHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 282 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 282 ~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+..+.+-+-++ ..-+++.++.+.++++++
T Consensus 347 ----~~~~~~l~lP~~-~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 347 ----WNSERICSLPLF-PDMTDADVDRVITALQQI 376 (379)
T ss_pred ----HHHhCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 112466777777 666777788888888765
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=154.21 Aligned_cols=274 Identities=16% Similarity=0.124 Sum_probs=169.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcCC---
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGR--- 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~~--- 63 (324)
+|+..+++++++|||.| +++|.|..+...+. ..|.++++++. .|+++|++++ +++
T Consensus 79 ~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~-----~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I-~~~~~~ 151 (431)
T cd00617 79 GAENILFSILLKPGRTV-PSNMHFDTTRGHIE-----ANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLI-DEVGAE 151 (431)
T ss_pred HHHHHHHHHhCCCCCEE-ccCCcccchHHHHH-----hCCCEeEEEecccccccccccCCCCCcCHHHHHHHh-CcccCC
Confidence 47788888999999987 68899998877663 35666666544 3799999999 543
Q ss_pred -ceEEEEecCCCCc-ccccC---hHHHHHHHHhcCCEEEEcCCC-Cc---CC------C--Ccc-C------CCCcEEEe
Q 020548 64 -TKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTF-SP---LV------L--SPA-R------LGADVVVH 119 (324)
Q Consensus 64 -~~~v~~~~~~npt-G~~~~---~~~i~~l~~~~~~~~ivD~~~-~~---~~------~--~~~-~------~~~d~~~~ 119 (324)
+++|+++.|+||+ |++.+ +++|.++|+++|+++|.|+++ .. +. . .+. + ...|.+..
T Consensus 152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m 231 (431)
T cd00617 152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM 231 (431)
T ss_pred CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence 8899999999998 88875 567899999999999999995 21 10 1 111 1 13677777
Q ss_pred CCccccccCCCeeEEEEEcCh-hHHHHHHHhhh---hhhhccCCCCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHH
Q 020548 120 SISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ---GALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 120 S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L 194 (324)
|++|..+.+- |||+++++ ++++.++.... +..+.+|.+..+..+.+ .+..... .+..++..++++++.+.|
T Consensus 232 S~~K~~~~~~---GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l~~~~~~r~~l~~~L 307 (431)
T cd00617 232 SAKKDGLVNI---GGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE-EDYLRHRVEQVRYLGDRL 307 (431)
T ss_pred EeecCCCCcc---ceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH
Confidence 7777665543 68999876 58888875331 11112222222222221 2222112 244555556779999999
Q ss_pred HhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--------HHHHHHHHHHhhccccccccccccCCcccee
Q 020548 195 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
++.|..+..|. +|..++++.+. ......|..+|-. ..|+.++..|......
T Consensus 308 ~~~G~~v~~P~-------------------Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~--e~gV~~~~~g~~~~~~ 366 (431)
T cd00617 308 DEAGVPIVEPA-------------------GGHAVFIDAREFLPHIPQEQFPAQALAAELYL--EAGVRAVELGIFSAGR 366 (431)
T ss_pred HHCCCCccCCC-------------------cceEEEEEhHHhcCCCCcccCcHHHHHHHHHH--HcCeeEEeecceeccc
Confidence 99998776665 56777777651 0125555544443 3444444444331110
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.|. ... ...-+.+.+||.+-+.--+.+.++.+.+++..+-+
T Consensus 367 -~~~--~~~--------~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 367 -DPN--TGE--------NKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred -CCC--CCc--------ccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 010 000 00112478999997323455566777777766643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=160.01 Aligned_cols=269 Identities=15% Similarity=0.115 Sum_probs=160.4
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCc-----ccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR-----ACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~-----~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
|...++.+++++||+|+++...|+++...+...... ..+.++..++.+ |+++++++++..++++|++.
T Consensus 112 an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~-- 189 (452)
T PTZ00094 112 ANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG-- 189 (452)
T ss_pred HHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--
Confidence 566678888999999999999998877654211100 011333333333 89999999944577887764
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-C----CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
++.+|...|+++|.++|+++|+++++|++| .+.. . .+.. ++|++++|+|||++||. ||+++.++++.+.+
T Consensus 190 ~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l 265 (452)
T PTZ00094 190 ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-YADVVTTTTHKSLRGPR---SGLIFYRKKVKPDI 265 (452)
T ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-CCcEEEcCCccCCCCCC---ceEEEEecccchHH
Confidence 345999999999999999999999999998 4432 1 2322 79999999999997665 57776666554444
Q ss_pred HHhhhh--hhhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 147 MDLHQG--ALMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 147 ~~~~~~--~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
...... ...+.| ++.....+.+ +..+ ...+...++..++++++.+.|++.++++..+... .
T Consensus 266 ~~~~~~~~~p~~~G-~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~---~-------- 333 (452)
T PTZ00094 266 ENKINEAVFPGLQG-GPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTD---N-------- 333 (452)
T ss_pred HHhhccccCCCCCC-CchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCC---C--------
Confidence 332210 001112 2222222222 2222 1233455667889999999998877766543310 0
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.-.++.|..++ .....+...|.. .|+ .++..+ .++.. ....++.||+|++ .
T Consensus 334 -----~~~~v~~~~~~-~~~~~~~~~L~~---~gI-~vs~~~-----~p~~~-------------~~~~~~~vRis~~-~ 384 (452)
T PTZ00094 334 -----HLVLVDLRPFG-ITGSKMEKLLDA---VNI-SVNKNT-----IPGDK-------------SALNPSGVRLGTP-A 384 (452)
T ss_pred -----ceEeecCCcCC-CCHHHHHHHHHH---CCc-EEeccc-----CCCCC-------------cCCCCCeEEECCH-H
Confidence 11233444332 123344444432 232 222110 01111 1123578999998 7
Q ss_pred CCH----HHHHHHHHHHHHhhhh
Q 020548 300 GTL----DQRWSQFEKALSRMQD 318 (324)
Q Consensus 300 ~~~----~~~~~~l~~~l~~~~~ 318 (324)
.++ +++++.+.++|+.+-+
T Consensus 385 ~tt~g~~~~di~~l~~~l~~~~~ 407 (452)
T PTZ00094 385 LTTRGAKEKDFKFVADFLDRAVK 407 (452)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHH
Confidence 765 7888888888776644
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=157.74 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=135.0
Q ss_pred hHHHHHHHc----cCCCC----EEEEcCCCchhHHHHHhhhcCc--c-cc-----eeEEEecCCCHHHHHHhhhcCCceE
Q 020548 3 AISSVLMQL----CSSGG----HVVAARTLYGGTHALLTHFFPR--A-CN-----ITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 3 ai~~~~~~~----~~~gd----~vl~~~p~y~~~~~~~~~~~~~--~-~g-----~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
|+..+++.. ..+|| +|++.++.|+++.......... . .+ ..+..++..|++++++.+ ++++++
T Consensus 100 A~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~a 178 (389)
T PRK01278 100 AVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAI-TPNTAA 178 (389)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhh-CCCeEE
Confidence 555555543 45676 8999999999876544211100 0 00 112234446899999999 778999
Q ss_pred EEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++|++|... ++++|+++|++||+++|+||+|.++.... .....|+ .|++|.++ +|+|+ |+
T Consensus 179 vivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~-~G~~i-g~ 254 (389)
T PRK01278 179 ILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIG-GGFPL-GA 254 (389)
T ss_pred EEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhcc-CCcce-EE
Confidence 99999999999443 58899999999999999999997664211 1223454 57999997 58997 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
+++++++++.+..... ..+++++.+.+.++...+..+.. +...++..++.+++.+.|++.... .|.+..
T Consensus 255 ~~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~~l~~~l~~l~~~--~~~~~~------- 323 (389)
T PRK01278 255 CLATEEAAKGMTPGTH-GSTYGGNPLAMAVGNAVLDVILA-PGFLDNVQRMGLYLKQKLEGLVDR--FPDVIE------- 323 (389)
T ss_pred EEEcHHHHhccCCCCC-CCCCCccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHhh--CCCcee-------
Confidence 9999888877754433 11222222222222222222111 123344556666666666653211 111000
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
...+.|.++++++.. +...|.+.+..
T Consensus 324 -----~v~g~G~~~~i~~~~--~~~~~~~~l~~ 349 (389)
T PRK01278 324 -----EVRGKGLLLGLKCVV--PNRDLVQALRD 349 (389)
T ss_pred -----eEecccEEEEEEEec--CHHHHHHHHHH
Confidence 112467788888853 35567777664
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=149.09 Aligned_cols=282 Identities=15% Similarity=0.155 Sum_probs=178.9
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|.++...+. ..|.++++++.+ |++++++++ ++++++|+++ |
T Consensus 57 ~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~-----~~G~~~v~~d~d~~~~~~d~~~le~~i-~~~tk~i~~~---~ 127 (375)
T PRK11706 57 AALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-----LRGAKIVFVDIRPDTMNIDETLIEAAI-TPKTRAIVPV---H 127 (375)
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHhc-CCCCeEEEEe---C
Confidence 4666666655 6899999999999999988773 378888888753 789999999 7789999965 4
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CC--ccCCCCcEEEeCCc--cccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LS--PARLGADVVVHSIS--KFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~--~~~~~~d~~~~S~s--K~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
++|...++++|.++|+++|+++|+|++|+... .+ +.....|+.++|++ |.++. |.+ |++++.++++.++++..
T Consensus 128 ~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~-g~g-G~~~~~~~~~~~~~~~~ 205 (375)
T PRK11706 128 YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTA-GEG-GALLINDPALIERAEII 205 (375)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccccc-cCC-eEEEECCHHHHHHHHHH
Confidence 79999999999999999999999999984332 22 22223578888877 99965 555 57778888888887766
Q ss_pred hhhh-h--------------hccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCc
Q 020548 150 HQGA-L--------------MLLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHP 210 (324)
Q Consensus 150 ~~~~-~--------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~ 210 (324)
..+. . ...|. .+....++..+.++..++...++..++.+.+.+.|.+.+. .+..|..+...
T Consensus 206 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 285 (375)
T PRK11706 206 REKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDC 285 (375)
T ss_pred HHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCC
Confidence 5310 0 00122 2345556665666666777777778888888888887641 12223211100
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc----cCCCCHHHHHhcC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST----SSELNAEEKALAG 286 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~ 286 (324)
.....++++.+++.....++.+.|.. .|+. ++.. +..+..+|.... ...++... .
T Consensus 286 ------------~~~~~~~~~~~~~~~~r~~l~~~L~~---~gI~-~~~~-~~p~~~~~~~~~~~~~~~~~p~a~----~ 344 (375)
T PRK11706 286 ------------KHNAHMFYIKLRDLEDRSALINFLKE---AGIM-AVFH-YIPLHSSPAGERFGRFHGEDRYTT----K 344 (375)
T ss_pred ------------ceeeEEEEEEECCcCCHHHHHHHHHH---CCCC-cccc-CCccCcchhhHhcCCCCCCChHHH----H
Confidence 01234667777644456777777775 3442 1211 111111111000 00111111 1
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+..+.+-+-++ ..-.+++++.+.++++++
T Consensus 345 ~~~~~l~lP~~-~~l~~~~~~~i~~~i~~~ 373 (375)
T PRK11706 345 ESERLLRLPLF-YNLTDVEQRTVIDTILEF 373 (375)
T ss_pred HHhCcEeccCC-CCCCHHHHHHHHHHHHHH
Confidence 12456666666 555566777777777654
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=169.11 Aligned_cols=289 Identities=14% Similarity=0.076 Sum_probs=174.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------------C--HHHHHHhhh-----
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------D--HEMVNSAIV----- 60 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------------d--~~~l~~~l~----- 60 (324)
+|++.++.++ +++||+|+++.-.|++....+ ....+ .|+++.+++.+ + .+++++.+.
T Consensus 108 ~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~~-~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~ 185 (805)
T PLN02724 108 AALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYALE-KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQK 185 (805)
T ss_pred HHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHHH-cCCeEEeccchhccccccccccccccchhhhhhhhhhhhcc
Confidence 4677888777 688999999999998877544 44444 68888887653 1 144554420
Q ss_pred ----cCCceEEEEecCCCCcccccChHHHHHHHHhc--------CCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccc
Q 020548 61 ----QGRTKVLYFESISNPTLAVANIPELSRLAHDK--------GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS 126 (324)
Q Consensus 61 ----~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~--------~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~ 126 (324)
.+++++|.+++.+|.||.+.|++++..+++.. ++++++|.++ +....+..++++|++++|+||++|
T Consensus 186 ~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~G 265 (805)
T PLN02724 186 REDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFG 265 (805)
T ss_pred ccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceecc
Confidence 14678999999999999999999775555432 3589999998 333445556689999999999998
Q ss_pred cCCCeeEEEEEcChhHHHHHHHhhhhh--------------------hhccCCCCCHHHHHHHhcCccc-----HHHHHH
Q 020548 127 GGADIIAGAVCGPANLVNSMMDLHQGA--------------------LMLLGPTMNPKVAFELSERIPH-----LGLRMK 181 (324)
Q Consensus 127 ~~g~r~~G~i~~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 181 (324)
+|.+ .|+++.++++.+.+.+...+. ..+..+++.......+...++. ++...+
T Consensus 266 gP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~ 343 (805)
T PLN02724 266 YPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAM 343 (805)
T ss_pred CCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHH
Confidence 5533 488888888777665432211 0122233332222222222222 233334
Q ss_pred HHHHHHHHHHHHHHhCC-------CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-------HHHHHHHHHHhh
Q 020548 182 EHCHRALIFARRMKKLG-------LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------EEKANRLMNYLQ 247 (324)
Q Consensus 182 ~~~~~~~~l~~~L~~~~-------~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~~l~ 247 (324)
+..+.++++.+.|++++ .++..|.-... +...++++++|.+.+ ......+.+..+
T Consensus 344 ~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~-----------~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~g 412 (805)
T PLN02724 344 HTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKL-----------EFHIQGPIVTFNLKRADGSWVGHREVEKLASLSG 412 (805)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCC-----------CcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcC
Confidence 45788889999998874 23333320000 001267899999873 222444544444
Q ss_pred ccccccccccccCCccceeccccccccCCCCHHHH--------------Hhc-CCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 248 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK--------------ALA-GISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 248 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
+ .+..|..+....+- .+..+.+... ... +...+.||+|+| ..++.++++.|.++
T Consensus 413 I-------~vR~G~~Ca~~~~~---~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~lv~~ 481 (805)
T PLN02724 413 I-------QLRTGCFCNPGACA---KYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQKFIDF 481 (805)
T ss_pred c-------EEeeccccCchHHH---HHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHHHHHH
Confidence 4 33444332211000 0000000000 001 223489999999 99999999999999
Q ss_pred HHhh
Q 020548 313 LSRM 316 (324)
Q Consensus 313 l~~~ 316 (324)
|+..
T Consensus 482 l~~~ 485 (805)
T PLN02724 482 IISS 485 (805)
T ss_pred HHHH
Confidence 9874
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=152.83 Aligned_cols=213 Identities=16% Similarity=0.150 Sum_probs=134.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC------CceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG------RTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~------~~~~v~~~~ 71 (324)
++..++.+++.+||+|+++.|.|....... ......+.++..++.+ |++++++++ ++ ++++|++++
T Consensus 61 a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~~~~~~lv~l~n 137 (333)
T PRK10534 61 ANLVALLSHCERGEEYIVGQAAHNYLYEAG--GAAVLGSIQPQPIDAAADGTLPLDKVAAKI-KPDDIHFARTRLLSLEN 137 (333)
T ss_pred HHHHHHHHhcCCCCeeEEechhhhhHhcCC--chHHhcCceEEeecCCCCCCCCHHHHHHhh-cccCcCcccceEEEEec
Confidence 455666677899999999988875322110 0001112455555432 799999988 54 689999997
Q ss_pred CCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcC-----CCCcc--CCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPL-----VLSPA--RLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~-----~~~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|+ +|.+.+.+ +|.++|+++++++++||+|... ..... ....|.++.|+||.|+++ +|||++++++
T Consensus 138 p~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~ 212 (333)
T PRK10534 138 TH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP---VGSLLVGNRD 212 (333)
T ss_pred CC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc---ccceEEcCHH
Confidence 65 59998755 5567889999999999997311 11111 112465667899998764 4447899999
Q ss_pred HHHHHHHhhhhhhhccCCCCC--HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.++.... .++.... ...++.....++....++++..++++++.+.|++.|.++. |.
T Consensus 213 ~i~~~~~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~-------------- 273 (333)
T PRK10534 213 YIKRARRWRK----MTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREAGADVM-RQ-------------- 273 (333)
T ss_pred HHHHHHHHHH----HhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCccC-CC--------------
Confidence 9999987765 2232222 1212222222333234555556678899999999887654 32
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.++++++++++ .....+.+.++.
T Consensus 274 -----~~nfv~~~~~~-~~~~~~~~~l~~ 296 (333)
T PRK10534 274 -----DTNMLFVRVGE-EQAAALGEYMRE 296 (333)
T ss_pred -----CceEEEEECCc-hhHHHHHHHHHH
Confidence 36788998863 234566666664
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=159.43 Aligned_cols=223 Identities=16% Similarity=0.227 Sum_probs=136.0
Q ss_pred chHHHHHHHccCCC-------CEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLCSSG-------GHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-------d~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..+++.+...+ ++|++..+.|+++........... ....+..++..|++++++++ ++++++
T Consensus 107 eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~ 185 (396)
T PRK02627 107 EANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAI-TDKTAA 185 (396)
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhc-CCCeEE
Confidence 46677777544332 679999999987654332111000 00112334455899999999 788999
Q ss_pred EEEecCCCCccc-cc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLA-VA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~-~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++||+|. .. .+++|.++|+++|+++|+||+|+++.... .....|+ .++||.++ +|.|+ ||
T Consensus 186 vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi--~t~sK~~~-~G~ri-g~ 261 (396)
T PRK02627 186 VMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDI--MTLAKGLG-GGVPI-GA 261 (396)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCE--EEEcchhh-CCccc-EE
Confidence 999999999994 43 38899999999999999999997664221 1123454 46999998 68997 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
+++++++++.+..... ..+++++.+.+.++...++.... +...++..++.+++.+.|++..... |...
T Consensus 262 ~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~-------- 329 (396)
T PRK02627 262 VLAKEKVADVFTPGDH-GSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKY--PGIK-------- 329 (396)
T ss_pred EEEcHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhC--CCee--------
Confidence 9999988887754322 11233333333333333322211 2234445555666666665542111 1100
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
...+.|.+++++++. ...++.+.+..
T Consensus 330 -----~~~~~g~~~~i~~~~--~~~~~~~~l~~ 355 (396)
T PRK02627 330 -----EVRGLGLMIGIELDR--PAAEIVKKALE 355 (396)
T ss_pred -----eeccCcEEEEEEecC--cHHHHHHHHHH
Confidence 011357889999842 35567776653
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-18 Score=156.98 Aligned_cols=255 Identities=17% Similarity=0.148 Sum_probs=163.7
Q ss_pred ccCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-c
Q 020548 11 LCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-A 80 (324)
Q Consensus 11 ~~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~ 80 (324)
++++|| +|++++++|+.+...+. ..|++++.++.+ |++++++++ ++++++|++++|+ |||.. .
T Consensus 153 ~~~~Gd~~~~~Vlv~~~~hp~~~~~~~-----~~G~~vv~v~~~~~~~~D~e~L~~~i-~~~t~~V~v~~Pn-~tG~~~~ 225 (481)
T PRK04366 153 HEARGDTKRTEVIVPDSAHGTNPASAA-----MAGFKVVEIPSNEDGLVDLEALKAAV-GEDTAALMLTNPN-TLGLFER 225 (481)
T ss_pred hhccCcCCCCEEEEcCCccHhHHHHHH-----HcCCEEEEeecCCCCCcCHHHHHhhc-ccCCeEEEEeCCC-Cccccch
Confidence 356776 99999999999998773 378888877652 899999999 8889999999987 99987 5
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-Cc-C-CCCccCCCCcEEEeCCccccccC---CCeeEEEEEcChhHHHHHHHhh---h
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SP-L-VLSPARLGADVVVHSISKFISGG---ADIIAGAVCGPANLVNSMMDLH---Q 151 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~-~-~~~~~~~~~d~~~~S~sK~~~~~---g~r~~G~i~~~~~~~~~l~~~~---~ 151 (324)
|+++|+++|+++|+++++|+++ .+ + ..++.++|+|++++|.||++++| |++-+|+++.++++.+.+.... .
T Consensus 226 dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~ 305 (481)
T PRK04366 226 NILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKD 305 (481)
T ss_pred HHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeecc
Confidence 8999999999999999999998 22 2 24677789999999999998755 2221488888877776653110 0
Q ss_pred h--h----------hhccCCCCCH---HHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 152 G--A----------LMLLGPTMNP---KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 152 ~--~----------~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
+ + .+....+.+. ..++..+. +.+.+.+..++...+++++.+.|++. +.+..+. +
T Consensus 306 g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~----~---- 376 (481)
T PRK04366 306 GDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDR----P---- 376 (481)
T ss_pred CCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCC----C----
Confidence 0 0 0001111111 11111111 22334444566688899999999886 3322211 0
Q ss_pred HHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 215 LKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.-..+.|..+ ......++.++|.. .|+. .+ ....| ...++
T Consensus 377 ----------~~~~~~~~~~~~~~~g~~~~~v~~~L~~---~Gi~---~~----~~~~p----------------~~~~~ 420 (481)
T PRK04366 377 ----------CMHEFVLSGKKLKETGVRTLDIAKRLLD---YGFH---PP----TIYFP----------------LIVPE 420 (481)
T ss_pred ----------eeEEEEEECccccccCCCHHHHHHHHHH---CCcc---CC----ccccc----------------cccCC
Confidence 0112233221 11245667777764 3331 11 00001 11246
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
.+|+|++ ..++.++++.|.++|+.+.+
T Consensus 421 ~l~is~~-e~~t~edid~l~~~l~~i~~ 447 (481)
T PRK04366 421 ALMIEPT-ETESKETLDAFIAAMKQIAE 447 (481)
T ss_pred eEEEccc-CCCCHHHHHHHHHHHHHHHH
Confidence 8999999 88888888888888877753
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=150.35 Aligned_cols=266 Identities=15% Similarity=0.171 Sum_probs=157.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeE--EEecC------CCHHHHHHhhhcCCceEEEEecC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT--TFVDI------SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~--~~~~~------~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++|+..++.++++|||+|+++...|.+.... ...+...+... ..++. .|++++++.++..++++|+++.+
T Consensus 100 ~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~ 177 (416)
T PRK13034 100 SQANGAVYLALLKPGDTILGMSLSHGGHLTH--GAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS 177 (416)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCccceeeeec--CCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC
Confidence 3578888999999999999999999763210 00000011111 22222 48999999884457889887654
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNS 145 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~ 145 (324)
. +|...|+++|.++|+++|+++++|+++ .+.. ..+.. ++|++++|+||+++++. ||+++++. .+.+.
T Consensus 178 ~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~ 251 (416)
T PRK13034 178 A--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKK 251 (416)
T ss_pred c--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHH
Confidence 3 578889999999999999999999997 3322 12222 58999999999996655 67776654 45555
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHH---hcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFEL---SERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.... .+ ..+....+..++.. ...+ ....++.++..++.+++++.|++.|+++..+.
T Consensus 252 ~~~~~~-~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~---------------- 313 (416)
T PRK13034 252 INSAVF-PG-LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGG---------------- 313 (416)
T ss_pred HHhhcC-Cc-ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCC----------------
Confidence 554332 11 11122222222221 1111 12234567789999999999999887654331
Q ss_pred CCCcceEEEEEeCCHH-HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC-
Q 020548 222 EYGFGGLLCLDMETEE-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL- 299 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~-~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~- 299 (324)
..+.++.+.+.+.. ....+.+.|.. .|++....+ .|.... ....+..+|+|+. .
T Consensus 314 --~~t~i~~v~~~~~~~~~~~~~~~L~~---~GI~v~~~~-------~p~~~~-----------~p~~~~~lR~~~~-~~ 369 (416)
T PRK13034 314 --TDNHLLLVDLRPKGLSGKDAEQALER---AGITVNKNT-------VPGDTE-----------SPFVTSGIRIGTP-AG 369 (416)
T ss_pred --CCCcEEEEEcCCCCCCHHHHHHHHHh---CCcEEeccC-------CCCCCc-----------CCCCCCeeEeCcH-HH
Confidence 02446777776322 33444455553 333211111 111000 0111357999987 5
Q ss_pred ---CCHHHHHHHHHHHHHhh
Q 020548 300 ---GTLDQRWSQFEKALSRM 316 (324)
Q Consensus 300 ---~~~~~~~~~l~~~l~~~ 316 (324)
...+++++.+.++++++
T Consensus 370 t~~~~~~~di~~l~~~l~~~ 389 (416)
T PRK13034 370 TTRGFGEAEFREIANWILDV 389 (416)
T ss_pred HhCCCCHHHHHHHHHHHHHH
Confidence 34467777777777655
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-17 Score=142.02 Aligned_cols=197 Identities=17% Similarity=0.201 Sum_probs=145.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhh-cCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIV-QGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~-~~~~~~v~~~~~~np 75 (324)
.|+..++.++++|||+|++......+ .-|..++.+ +|.++..++.. |++++++++. +++.++|.+.+.-..
T Consensus 67 ~amEAav~sl~~pgdkVLv~~nG~FG--~R~~~ia~~-~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETS 143 (383)
T COG0075 67 LAMEAAVASLVEPGDKVLVVVNGKFG--ERFAEIAER-YGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETS 143 (383)
T ss_pred HHHHHHHHhccCCCCeEEEEeCChHH--HHHHHHHHH-hCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCc
Confidence 47888899999999999999876554 334445555 78888777654 9999999994 256889999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
||...|+++|+++|++||+++|||.+- ++...++.++|+|+++.+..|++++|.+- |++..+++.++.+......
T Consensus 144 TGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGl--a~v~~S~~a~e~~~~~~~~~ 221 (383)
T COG0075 144 TGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGL--AFVAVSERALEAIEERKHPS 221 (383)
T ss_pred ccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCcc--ceeEECHHHHHHHhcCCCCc
Confidence 999999999999999999999999985 44456677889999999999999886543 7887777766666532110
Q ss_pred ----------hh---hccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 153 ----------AL---MLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 153 ----------~~---~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+. ..+..++.......+ ++.+ +.++.+.+|++++++.+++.++++|+++..
T Consensus 222 ~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 222 FYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA 290 (383)
T ss_pred eeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 11 112222222222222 2211 236789999999999999999999996543
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=157.61 Aligned_cols=190 Identities=23% Similarity=0.235 Sum_probs=139.5
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCch---hHHHHHhhhcCcccceeEEEecC---CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYG---GTHALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~---~~~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
++|+..++.+ +.+||+|++++..|. +..... ..... .|+++.+++. .+++++++++ +++|++|++++++|
T Consensus 147 ~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~-~~~~~-~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN 222 (454)
T TIGR00474 147 AAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIP-DVMEQ-SGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSN 222 (454)
T ss_pred HHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHH-HHHHH-cCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCc
Confidence 3577777744 689999999997753 322221 12223 7999999876 4789999999 88999999999999
Q ss_pred Cc--c--cccChHHHHHHHHhcCCEEEEcCCCCcC-------------CCCccCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 75 PT--L--AVANIPELSRLAHDKGVTVVVDNTFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 75 pt--G--~~~~~~~i~~l~~~~~~~~ivD~~~~~~-------------~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++ | ...|+++|+++||++|+++++|.+.+.+ ..++.+.|+|++++|.+|+++||. +|+++
T Consensus 223 ~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~---~G~i~ 299 (454)
T TIGR00474 223 YRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ---AGIIV 299 (454)
T ss_pred ccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe---EEEEE
Confidence 85 6 4689999999999999999999873211 124456799999999999998874 69999
Q ss_pred cChhHHHHHHHhhh------------hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 138 GPANLVNSMMDLHQ------------GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 138 ~~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+++++++.++.... ......+..+.+..++..+..+..+..+.+++.+++..+.++|++.
T Consensus 300 g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~ 371 (454)
T TIGR00474 300 GKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAA 371 (454)
T ss_pred ECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence 99888765432111 0011223334445555566667777788889999999999999874
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=151.75 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=133.1
Q ss_pred CCEEEEcCCCchhHHHHHhh----------hcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---
Q 020548 15 GGHVVAARTLYGGTHALLTH----------FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~----------~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 81 (324)
.++|+..+..|++....... +.+ ....+..++.+|++++++.+ .+++++|+++++++..|...+
T Consensus 129 ~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~l~~~l-~~~~aaiiiep~~~~gg~~~~~~~ 205 (403)
T PRK05093 129 KTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGP--KPADITHVPFNDLAAVKAVI-DDHTCAVVVEPIQGEGGVIPATPE 205 (403)
T ss_pred CCeEEEEcCCcCCchhhhHhhcCChhhhhcCCC--CCCCcEEeCCCCHHHHHHHh-cCCeEEEEEecccCCCCCccCCHH
Confidence 35788888888775432211 111 12235566677999999999 778999999955444444432
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|+++|++||+++|+||+|.++.... .....| +.|+||.++ +|+|+ ||+++++++++.+..... .
T Consensus 206 ~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd--i~s~sK~l~-~G~ri-g~vv~~~~i~~~l~~~~~-~ 280 (403)
T PRK05093 206 FLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD--ILTSAKALG-GGFPI-GAMLTTAEIASHFKVGTH-G 280 (403)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC--EEEeccccc-CCcce-EEEEEcHHHHhhcCCCCC-C
Confidence 8899999999999999999997663221 112345 567999998 58997 999999999888865333 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.+++++.+.+.++...++.+. -.+..+++.++++.+.+.|++.+....... ...+.|.++++.+
T Consensus 281 ~t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---------------~~~~~G~~~~~~l 344 (403)
T PRK05093 281 STYGGNPLACAVAEAVFDIIN-TPEVLEGVKARRQRFVDGLQKINQKYGVFS---------------EIRGMGLLIGAEL 344 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHhhCCCeE---------------eEeeCceEEEEEe
Confidence 122223333323232222221 234556778889999999988643211100 1114688899998
Q ss_pred CCH--HHHHHHHHHhhc
Q 020548 234 ETE--EKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~--~~~~~~~~~l~~ 248 (324)
++. ....+|.+.+..
T Consensus 345 ~~~~~~~~~~~~~~l~~ 361 (403)
T PRK05093 345 KPQYKGRARDFLNAAAE 361 (403)
T ss_pred cCcchhHHHHHHHHHHH
Confidence 642 246677777664
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-17 Score=145.02 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=147.8
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCccc
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLA 78 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~ 78 (324)
+..++..+.++||.|++....|.+....++.. .+..+. ++..|++++++.++. +++.+|++++++|++|.
T Consensus 84 ~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~----~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~ 158 (370)
T PRK05937 84 NLGLCAHLSSVTDYVLWDEQVHISVVYSLSVI----SGWHQS-FRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGT 158 (370)
T ss_pred HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHc----CCceEE-ecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCC
Confidence 33344445578888888889998888877431 233333 455689999998842 34567888999999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCcc----CCC---CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPA----RLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~----~~~---~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+.|+++|.++|+++|+++++|++|+ + +..+.. .++ .++++.|+||.+|+.| +| ++..++....+...
T Consensus 159 i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~-vl~~~~~~~~~~~~ 234 (370)
T PRK05937 159 LAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AA-LLSSSEVKQDLMLN 234 (370)
T ss_pred ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eE-EEcCHHHHHHHHHh
Confidence 9999999999999999999999994 3 332221 122 3467899999998865 34 44445655555432
Q ss_pred hhhhhhccCCCCCHHHHHHHhcCcccH----HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 150 HQGALMLLGPTMNPKVAFELSERIPHL----GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
..+. .+.++ ..+.....+...++.+ ....++..++++++.+.|...+ +
T Consensus 235 ~~~~-~~s~~-~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~-----~--------------------- 286 (370)
T PRK05937 235 SPPL-RYSTG-LPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAA-----P--------------------- 286 (370)
T ss_pred CCCC-eecCC-CCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCC-----C---------------------
Confidence 2211 12222 2222222222222222 1223344555555555543211 1
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
+....+.+++. ....+.+.|.. .|+ .++ ..+.| ..+.+|+|++ ..+++++
T Consensus 287 ~~~~~i~~~~~-~~~~~~~~L~~---~gi-~v~------~~~~~------------------~~~~iRis~~-~~~t~ed 336 (370)
T PRK05937 287 GCVQPIFLPGI-SEQELYSKLVE---TGI-RVG------VVCFP------------------TGPFLRVNLH-AFNTEDE 336 (370)
T ss_pred CCEEEEEeCCh-hHHHHHHHHHH---CCe-eEE------eeCCC------------------CCCEEEEEcC-CCCCHHH
Confidence 11234555533 24556666653 232 111 11111 1357999999 9999999
Q ss_pred HHHHHHHHHhhhh
Q 020548 306 WSQFEKALSRMQD 318 (324)
Q Consensus 306 ~~~l~~~l~~~~~ 318 (324)
++.+.++|+++.+
T Consensus 337 id~l~~~L~~~~~ 349 (370)
T PRK05937 337 VDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=151.19 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=102.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------CCHHHHHHhhhc-CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------SDHEMVNSAIVQ-GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------~d~~~l~~~l~~-~~~~~v~~ 69 (324)
+|+..++.++++|||+|+++.++|.+....+. ..|.++.+++. .|++++++++++ +++++|++
T Consensus 86 ~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l 160 (294)
T cd00615 86 SSNKAVILAVCGPGDKILIDRNCHKSVINGLV-----LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVI 160 (294)
T ss_pred HHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH-----HCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEE
Confidence 46778888899999999999999999888774 25777766643 278999999843 57899999
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++| |++|.+.|+++|+++|+++|+++++|++|+. +.+. ....++|+++.|+||++++ .+.+|++..+.
T Consensus 161 ~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g--~~~~~~l~~~~ 235 (294)
T cd00615 161 TNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA--LTQGSMIHVKG 235 (294)
T ss_pred ECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccch--HhHHHHHHhCC
Confidence 988 7899999999999999999999999999843 3221 2234899999999999754 33335554443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=148.84 Aligned_cols=214 Identities=16% Similarity=0.131 Sum_probs=129.8
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCc--c------cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPR--A------CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---- 81 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~--~------~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---- 81 (324)
.+++|++.+..|++.....-..... . ....+..++..|++++++.++.+++++|++++++||+|.+.+
T Consensus 121 ~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~ 200 (400)
T PTZ00125 121 NQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGY 200 (400)
T ss_pred CCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHH
Confidence 3578888888887754332111000 0 001234455569999999994368999999999999999987
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 154 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~ 154 (324)
+++|.++|++||+++|+||+|.++... . .....|+++ ++|++++++.++ |+++.++++++.+..... ..
T Consensus 201 l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~g~~~i-g~v~~~~~~~~~~~~~~~-~~ 276 (400)
T PTZ00125 201 LKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL--LGKALSGGLYPI-SAVLANDDVMLVIKPGEH-GS 276 (400)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE--EcccccCCCcCc-EEEEEcHHHHhhccCCCC-CC
Confidence 999999999999999999999655321 1 122457765 679998754597 999999998888764332 11
Q ss_pred hccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 155 MLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
..+.++....++ ..++.+.. ....++..++.+.+.+.|++......... ...+.|.++++.+
T Consensus 277 -t~~~~~~~~~aa~~~l~~i~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~---------------~~~~~g~~~~v~~ 339 (400)
T PTZ00125 277 -TYGGNPLACAVAVEALEVLKE-EKLAENAQRLGEVFRDGLKELLKKSPWVK---------------EIRGKGLLNAIVF 339 (400)
T ss_pred -CCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhcCCCeE---------------EEecccEEEEEEE
Confidence 222222222222 12211111 12234445566666777765410000000 0013578888888
Q ss_pred CC--HHHHHHHHHHhhc
Q 020548 234 ET--EEKANRLMNYLQN 248 (324)
Q Consensus 234 ~~--~~~~~~~~~~l~~ 248 (324)
+. ......+.+.+..
T Consensus 340 ~~~~~~~~~~~~~~l~~ 356 (400)
T PTZ00125 340 DHSDGVNAWDLCLKLKE 356 (400)
T ss_pred ccCcchHHHHHHHHHHH
Confidence 63 3456667777653
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=149.29 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=136.7
Q ss_pred chHHHHHHHc-cCCC-CEEEEcCCCchhHHHHHhhhcCc--c---c---ceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQL-CSSG-GHVVAARTLYGGTHALLTHFFPR--A---C---NITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~-~~~g-d~vl~~~p~y~~~~~~~~~~~~~--~---~---g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++... .-+| ++|++.++.|++........... . + ...+..++.+|++++++.+ ++++++|++++
T Consensus 97 ~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~ii~e~ 175 (377)
T PRK02936 97 EANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVM-NEEVAAVMLEV 175 (377)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhc-cCCeEEEEEec
Confidence 3555566532 1234 67999999888543222111000 0 0 0123455556899999999 78899999999
Q ss_pred CCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC--c-----cCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
+++++|... .+++|.++|++||+++|+||+|.++... + .....|++ ++||.++ +|+|+ |++++++
T Consensus 176 i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~i-g~v~~~~ 251 (377)
T PRK02936 176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-NGIPV-GAMIGKK 251 (377)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-CCCcc-EEEEEcH
Confidence 999988774 3899999999999999999999666432 1 11234654 6999998 58996 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--CceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~p~~~~~~~~~~~~~~ 218 (324)
++.+.+..... ..++.++.+.+.++...+..+. .+..+++..++.+++.+.|++.. .....+
T Consensus 252 ~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------- 315 (377)
T PRK02936 252 ELGTAFGPGSH-GSTFGGNPLAMAAAKEVLQVIK-QPSFLEEVQEKGEYFLQKLQEELEHLECVKN-------------- 315 (377)
T ss_pred HHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhhCCcEEe--------------
Confidence 98887754332 1112222233333333332221 12445666778888888887631 211100
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
..+.|.++++++++. ...+.+.+..
T Consensus 316 ---v~~~g~~~~i~~~~~--~~~~~~~l~~ 340 (377)
T PRK02936 316 ---IRGKGLMIGIECTEE--VAPVIEQLRE 340 (377)
T ss_pred ---EeecceEEEEEecch--HHHHHHHHHH
Confidence 013577899999743 4556666653
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=153.01 Aligned_cols=190 Identities=22% Similarity=0.174 Sum_probs=134.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH---HHHHhhhcCcccceeEEEecC---CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT---HALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~---~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+ +.+||+|++++.++..+ ... .....+ .|+++.+++. .+++++++++ +++|++|++++++|+
T Consensus 153 aAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i-~~~~~~-~G~~l~~v~~~~~t~~~dle~aI-~~~TklV~~vh~sN~ 228 (464)
T PRK04311 153 AAVLLALNA-LAAGKEVIVSRGELVEIGGAFRI-PDVMRQ-AGARLVEVGTTNRTHLRDYEQAI-NENTALLLKVHTSNY 228 (464)
T ss_pred HHHHHHHHH-hCCCCEEEEcchhhhhcCcchhh-HHHHHH-CCcEEEEECCCCCCCHHHHHHhc-CccCeEEEEEcCCCc
Confidence 577777755 68999999998755422 111 112223 7899888875 3789999999 889999999999998
Q ss_pred --cc--cccChHHHHHHHHhcCCEEEEcCCCCcC-------------CCCccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 76 --TL--AVANIPELSRLAHDKGVTVVVDNTFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 76 --tG--~~~~~~~i~~l~~~~~~~~ivD~~~~~~-------------~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+| ...|+++|+++||++|+++++|++.+.+ ...+.+.|+|++++|++|++|||. +|++++
T Consensus 229 ~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~---~G~i~g 305 (464)
T PRK04311 229 RIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ---AGIIVG 305 (464)
T ss_pred cccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc---eEEEEE
Confidence 34 5679999999999999999999953211 123445799999999999998875 699999
Q ss_pred ChhHHHHHHHhhhh-hhhccCCCCCHHHHHHH-----------hcCcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 139 PANLVNSMMDLHQG-ALMLLGPTMNPKVAFEL-----------SERIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 139 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
++++++.++..... ..+....+++++.+.+. +..+..+..+.+++.++++.+.++|+++.
T Consensus 306 ~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~ 377 (464)
T PRK04311 306 KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL 377 (464)
T ss_pred cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence 99998877632110 11122333444433332 11223355677888899999999999874
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=144.39 Aligned_cols=220 Identities=18% Similarity=0.176 Sum_probs=150.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhh-----hcCcccceeEEEec--CC------CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTH-----FFPRACNITTTFVD--IS------DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~-----~~~~~~g~~~~~~~--~~------d~~~l~~~l~~~~~~~v~ 68 (324)
.|...++.++++|||+|+..+..|+++...... .... .|+.+..++ .+ |.+++++.....++|+|+
T Consensus 225 ~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~-sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII 303 (586)
T PLN02271 225 SANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSG-ASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILI 303 (586)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCchhccccccccccccc-ccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEE
Confidence 467788889999999999999999888765421 1111 344333332 32 889999854488999999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh-
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN- 141 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~- 141 (324)
+....+| ...|+++++++|+++|+++++|.++ .++. .+|.. ++|++++|+||++.||- ||+++.+++
T Consensus 304 ~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~ 377 (586)
T PLN02271 304 CGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGP 377 (586)
T ss_pred ECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCCCCC---ceEEEecccc
Confidence 9888888 7789999999999999999999998 5553 23444 59999999999997765 677765543
Q ss_pred -------------------HHHHHHHhhhhhhhccCCCCCHHHHHH--Hhc--CcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 142 -------------------LVNSMMDLHQGALMLLGPTMNPKVAFE--LSE--RIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 142 -------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+.+++.....+ . ..++......++. .+. ....+..+.++..+|++.|.+.|.+.|
T Consensus 378 ~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-g-lqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G 455 (586)
T PLN02271 378 KLRKQGMLLSHGDDNSHYDFEEKINFAVFP-S-LQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRK 455 (586)
T ss_pred cccccCCccccccccccHHHHHHhhcccCC-c-cccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44444433321 1 2233322222222 122 123356788888999999999999999
Q ss_pred CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 199 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 199 ~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
+++..-. +.+ ..+++++. +...+++.++...+
T Consensus 456 ~~vv~gg---Tdn---------------HlvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 456 CRLVTGG---TDN---------------HLLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred CeEeeCC---CCc---------------ceeeecCcccCCCHHHHHHHHHHcCe
Confidence 9776433 222 26677665 35667777776664
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-17 Score=156.22 Aligned_cols=266 Identities=18% Similarity=0.168 Sum_probs=176.8
Q ss_pred hHHHHHHHccCC-CC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc---CCceEEEE
Q 020548 3 AISSVLMQLCSS-GG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ---GRTKVLYF 69 (324)
Q Consensus 3 ai~~~~~~~~~~-gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~---~~~~~v~~ 69 (324)
|+..+++++.++ || +|+++...|+++...+. ..|++++.++.+ |+++|++++ + +++++|++
T Consensus 599 a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~-----~~G~~vv~v~~d~~G~vDle~L~~~i-~~~~~~ta~V~v 672 (993)
T PLN02414 599 AGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA-----MCGMKIVVVGTDAKGNINIEELRKAA-EAHKDNLAALMV 672 (993)
T ss_pred HHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH-----HCCCEEEEeccCCCCCcCHHHHHHHH-hccCCCeEEEEE
Confidence 678888888866 88 89999999999998884 268898888764 899999999 5 47899999
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-Cc--CCCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhH
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP--LVLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANL 142 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~--~~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~ 142 (324)
++|+|.+|...|+++|.++||++|+++++|.++ .+ ....|.++|+|++++|.||+|++| |.-+ |+++.++++
T Consensus 673 t~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~-G~l~~~~~L 751 (993)
T PLN02414 673 TYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHL 751 (993)
T ss_pred ECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCe-eeEEEchhh
Confidence 999999999999999999999999999999998 22 235677889999999999987743 2334 999888876
Q ss_pred HHHHHHhhhh----hh----hccCCCCC--HH-------HHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 143 VNSMMDLHQG----AL----MLLGPTMN--PK-------VAFELS--ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 143 ~~~l~~~~~~----~~----~~~~~~~~--~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
...+-....+ .. ..+.++.. .. .++..+ .+.+.+.+..+....+++++.+.|++ +..+.+
T Consensus 752 ~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~ 830 (993)
T PLN02414 752 APFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLF 830 (993)
T ss_pred cccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccc
Confidence 6655432100 00 01111111 11 111111 12333444456668899999999987 333333
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEE-eCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLD-MET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
+.-.+ + . -.-.++.+. ++. ...+..+.++|.. +|+++. ...
T Consensus 831 ~~~~~-~---~---------~hEfv~~~~~l~~~~g~~~~di~krL~d---~Gihap-------------t~~------- 874 (993)
T PLN02414 831 RGKNG-T---C---------AHEFIIDLRPFKNTAGIEPEDVAKRLMD---YGFHAP-------------TMS------- 874 (993)
T ss_pred cCCCC-C---e---------eeeEEEeccccccccCCCHHHHHHHHHH---cCcEEe-------------eec-------
Confidence 22000 0 0 001122222 211 1234567677663 444221 000
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+. .++.+|++.. ..+..++++.|.+++..+.+
T Consensus 875 ----~p-v~~~lmiepT-E~~skeelDrf~~al~~i~~ 906 (993)
T PLN02414 875 ----WP-VPGTLMIEPT-ESESKAELDRFCDALISIRE 906 (993)
T ss_pred ----cc-cCCEEEEEee-eeCCHHHHHHHHHHHHHHHH
Confidence 01 1578999999 88899999999999988764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=146.02 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=152.4
Q ss_pred CCEEEEcCCCchhHHHHHhhhcC--cc------cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc----Ch
Q 020548 15 GGHVVAARTLYGGTHALLTHFFP--RA------CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NI 82 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~--~~------~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~----~~ 82 (324)
.++|+..+..|++.....-.... .. ....+..++.+|++++++++ ++++++|++++++++.|... .+
T Consensus 124 r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epi~~~~G~~~~~~~~l 202 (397)
T TIGR03246 124 KSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALI-SDKTCAVIVEPIQGEGGVVPADPAFL 202 (397)
T ss_pred CCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHh-ccCeEEEEEecccCCCCCcCCCHHHH
Confidence 35788888777775432211100 00 01134456667999999999 77899999999888888663 38
Q ss_pred HHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh
Q 020548 83 PELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 155 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~ 155 (324)
++|+++|++||+++|+||+|.++... .....+|++ +++|.+++ |.++ |++++++++++.+..... ..+
T Consensus 203 ~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lgg-G~pi-gav~~~~~i~~~~~~~~~-~~t 277 (397)
T TIGR03246 203 KGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALGG-GFPI-GAMLTTTEIAAHLKVGTH-GTT 277 (397)
T ss_pred HHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--EeehhhhC-Ccce-eEEEEcHHHHHhccCCCc-CCC
Confidence 89999999999999999998666321 112245665 69999975 8997 999999988887754322 112
Q ss_pred ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 156 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+.++.+...++...+..+. -+...++..++.+++.+.|++.+.+..... ...+.|.++.+++.+
T Consensus 278 ~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~---------------~vrg~G~~~~i~~~~ 341 (397)
T TIGR03246 278 YGGNPLACAVAGKVLDLVN-TPELLAGVKQRHDLFVDGLEKINARYNVFS---------------EIRGKGLLIGAVLTE 341 (397)
T ss_pred CCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHhcCCCeE---------------eeecCceEEEEEEcC
Confidence 3222222222222222221 234567778888889888887643111011 112467788888753
Q ss_pred --HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 236 --EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 236 --~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
......|.+.+.. .|++. .+ ..++.+|+++. ...++++++.+.++|
T Consensus 342 ~~~~~~~~~~~~l~~---~Gv~~-----------~~-----------------~g~~~lR~~p~-~~~t~~~i~~~~~~l 389 (397)
T TIGR03246 342 AYQGKAKQFVNAAAE---EGVIA-----------LI-----------------AGPNVVRFAPS-LVISDDDIDEGLARF 389 (397)
T ss_pred chhhHHHHHHHHHHH---CCeEE-----------ee-----------------cCCCEEEEeCC-CCCCHHHHHHHHHHH
Confidence 2345677777664 33311 11 01368999887 655665555555555
Q ss_pred Hhh
Q 020548 314 SRM 316 (324)
Q Consensus 314 ~~~ 316 (324)
++.
T Consensus 390 ~~~ 392 (397)
T TIGR03246 390 ERA 392 (397)
T ss_pred HHH
Confidence 443
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=138.66 Aligned_cols=280 Identities=20% Similarity=0.243 Sum_probs=181.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+.++++++ ++|||+||+++-+|.++...+ ...|.+++++|.+ |++.+++++ +++||+|+.. +
T Consensus 60 ~AL~laL~al~ig~GDeVI~ps~TfvATan~i-----~~~Ga~PVFvDid~~T~nid~~~ie~aI-t~~tKAIipV---h 130 (374)
T COG0399 60 AALHLALLALAIGPGDEVIVPSFTFVATANAV-----LLVGAKPVFVDIDPDTLNIDPDLIEAAI-TPRTKAIIPV---H 130 (374)
T ss_pred HHHHHHHHhcCCCCCCEEEecCCchHHHHHHH-----HHcCCeEEEEecCCcccCCCHHHHHHHc-ccCCeEEEEe---h
Confidence 3677777755 699999999999999988877 3379999999986 899999999 8889999954 5
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCC--CcEEEeCC--ccccccCCCeeEEEEE-cChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLG--ADVVVHSI--SKFISGGADIIAGAVC-GPANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~--~d~~~~S~--sK~~~~~g~r~~G~i~-~~~~~~~~l~~ 148 (324)
-.|...|+++|.++|++||++||+|.++ .+..+.....| -|+.++|| +|.++... ||.++ .++++.++++.
T Consensus 131 l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgE---GGav~tnd~ela~k~~~ 207 (374)
T COG0399 131 LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGE---GGAVVTNDEELAEKARS 207 (374)
T ss_pred hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccC---ceEEEeCCHHHHHHHHH
Confidence 7899999999999999999999999998 33333322332 57888888 78886643 67775 56788888887
Q ss_pred hhhhhhh----------ccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 149 LHQGALM----------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 149 ~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
.+.+... ..| ..+....+++.+.+++.+++..++.+++++.+.+.|++.+. +..|..+....|
T Consensus 208 lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~---- 282 (374)
T COG0399 208 LRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVH---- 282 (374)
T ss_pred HHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCcee----
Confidence 6652110 112 22455566666777788888888888999999999998753 112221111110
Q ss_pred HHhccCCCcceEEEEEeCCH-HHHHHHHHHhhccccccccccccCCccc-eeccccccc-----cCCCCHHHHHhcCCCC
Q 020548 217 SMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYET-LMSCSGSST-----SSELNAEEKALAGISA 289 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~ 289 (324)
.-..+.+.++.. .....+.+.|+. .|+ ....+.. +...+.... ...++..+. ...
T Consensus 283 --------~~~~~~i~~~~~~~~R~~l~~~L~~---~gi---~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~----~~~ 344 (374)
T COG0399 283 --------AWHLYTILVDEEGISRDALMESLKE---AGV---GAVVYFRPLHLQPAYRQLGYFPEGDLPNAED----LSE 344 (374)
T ss_pred --------eeeeeEEEecCCCCCHHHHHHHHHh---CCC---CceEEeeccccchhhhcccccccCCCchHHH----Hhh
Confidence 112344555532 445667777775 222 2111111 111110000 011222211 124
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+.+++=+. ..-+++.++.+.+++..+-
T Consensus 345 r~l~LP~~-p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 345 RILSLPLH-PNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred CeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 67888777 7767777788877776653
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-16 Score=139.18 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=93.5
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCEE
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 96 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ 96 (324)
.|++.+..|++......... + .+.++..++..|++++++++ +++++++++++|+||+|.+.++++|.++|+++|+++
T Consensus 136 ~vi~~~~~~H~s~~~~~~~~-~-~~~~v~~~~~~d~~~l~~~~-~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~l 212 (402)
T PRK07505 136 PHMVFDKNAHASLNILKGIC-A-DETEVETIDHNDLDALEDIC-KTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFL 212 (402)
T ss_pred CEEEEchhhhHhHHhhhhhh-h-cCCeEEEeCCCCHHHHHHHH-hcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEE
Confidence 36676666655432221221 1 24577788888999999998 667789999999999999999999999999999999
Q ss_pred EEcCCCC--cCCC-------CccC---CCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhh
Q 020548 97 VVDNTFS--PLVL-------SPAR---LGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQ 151 (324)
Q Consensus 97 ivD~~~~--~~~~-------~~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~ 151 (324)
|+||+|+ .+.. .... .+.+++++|++|.++++ ||+++ .++++.+.+.....
T Consensus 213 i~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~ 276 (402)
T PRK07505 213 YIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELILRYAG 276 (402)
T ss_pred EEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHHHhCC
Confidence 9999972 2211 1111 24568889999999876 47875 57788888876544
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=144.54 Aligned_cols=277 Identities=18% Similarity=0.176 Sum_probs=175.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++.++ +++||+|+++..+|.++...+. ..|.+++++|.+ |++++++++ ++++++|++.+
T Consensus 51 ~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~-----~~G~~pv~~Di~~~~~~id~~~~~~~i-~~~t~ai~~~h--- 121 (363)
T PF01041_consen 51 SALHLALRALGLGPGDEVIVPAYTFPATASAIL-----WAGAEPVFVDIDPETLNIDPEALEKAI-TPKTKAILVVH--- 121 (363)
T ss_dssp HHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH-----HTT-EEEEE-BETTTSSB-HHHHHHHH-HTTEEEEEEE----
T ss_pred HHHHHHHHhcCCCcCceEecCCCcchHHHHHHH-----HhccEEEEEeccCCcCCcCHHHHHHHh-ccCccEEEEec---
Confidence 4788888887 6899999999999999998883 489999999875 899999999 89999999764
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCc--cCCCCcEEEeCC--ccccccCCCeeEEEEEc-ChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSP--ARLGADVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~--~~~~~d~~~~S~--sK~~~~~g~r~~G~i~~-~~~~~~~l~~ 148 (324)
..|...|+++|.++|+++|+++|+|.+++.. .... ...--|+.++|| +|.+.... ||+++. ++++.+.++.
T Consensus 122 ~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge---GG~v~~~~~~~~~~~~~ 198 (363)
T PF01041_consen 122 LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGE---GGAVVTNDPELAERARA 198 (363)
T ss_dssp GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS----EEEEESTHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCCC---CeeEEecHHHHHHHhhh
Confidence 6889999999999999999999999998332 2222 222359999998 58886544 677755 5678888887
Q ss_pred hhhhhhhc------------cC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ce-eCCCCCCCchh
Q 020548 149 LHQGALML------------LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KV-LYPGLEDHPHH 212 (324)
Q Consensus 149 ~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~-~~p~~~~~~~~ 212 (324)
+... +.. .| ..++...++..+.++..++..+++.+++.+.+.+.|...+. .. ..+.... .
T Consensus 199 ~~~~-g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~--~- 274 (363)
T PF01041_consen 199 LRNH-GRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAE--R- 274 (363)
T ss_dssp HTBT-TEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTE--E-
T ss_pred hhcc-CcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccccccccc--c-
Confidence 6652 111 11 23677778878888888999999999999999999999875 22 2122100 0
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceecccccccc-----CCCCHHHHHhc
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS-----SELNAEEKALA 285 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~ 285 (324)
.....+.+.+++. .....+.+.|.. .|+ .....-...+-..|..... ..++...
T Consensus 275 -----------~~~~~f~i~~~~~~~~~rd~l~~~L~~---~GI-~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae---- 335 (363)
T PF01041_consen 275 -----------SSYYRFPIRLPDEALADRDELVEALRA---RGI-ETRPHYPKPLHRQPVYRSYPYYAPGDLPNAE---- 335 (363)
T ss_dssp -----------BCESSEEEEETCCGCSTHHHHHHHHHH---TTB-EEBCSTSSCGGGSGGGTTGEEEETSSSHHHH----
T ss_pred -----------cccccccccccccccchHHHHHHHHHH---CCC-cccccccCchhhhHHHHhcCccccCCCHHHH----
Confidence 1233456677642 236677777775 333 1111110011101111000 0011111
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 286 GISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 286 ~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+..+.+-|-++ ..-+++.++.+.++++
T Consensus 336 ~l~~r~l~LP~~-~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 336 RLSQRLLSLPIH-PRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHEEEEEHS-TTSCHHHHHHHHHHHH
T ss_pred HHHhCeEECcCC-CCCCHHHHHHHhhccC
Confidence 112466888888 7777778888887763
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-16 Score=131.58 Aligned_cols=232 Identities=21% Similarity=0.311 Sum_probs=153.4
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~ 69 (324)
+||..++.++++|||+++... .-|......+- ..+.. +|+.+..++.. |.+.+++++ ++++|+|++
T Consensus 83 HAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e-~Gi~Y~~v~L~~dg~~D~~~i~~~~-~~~tk~v~I 160 (403)
T PF06838_consen 83 HAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE-FGIKYREVPLTEDGTIDWEAIKKAL-KPNTKMVLI 160 (403)
T ss_dssp HHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG-GT-EEEE--B-TTSSB-HHHHHHHH-HTTEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH-hCceeEEEeecCCCCcCHHHHHHhh-ccCceEEEE
Confidence 478899999999999998644 77888877772 22233 78999888864 899999999 789999999
Q ss_pred ec----CCCCcccccChHHHHHHHHhc--CCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES----ISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~----~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
.- ..-|+-.+.+++++.+++|+. +++++||++|+.|. ..|.+.|+|++.+|+-|..|+.-.+.|||++++++
T Consensus 161 QRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~ 240 (403)
T PF06838_consen 161 QRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKD 240 (403)
T ss_dssp E-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHH
T ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHH
Confidence 75 233444445677777777764 78999999999986 46888899999999999999876678999999999
Q ss_pred HHHHHHHhh--hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+.... ++.+...|.++.... .+.+++..-+....+..+-+......++++|+++. |.... +.
T Consensus 241 lVe~~a~RLTaPGiG~e~G~t~~~~R--~~~QGlFlAP~vV~eAlKgaif~A~~fe~lG~~v~-P~~~~-~R-------- 308 (403)
T PF06838_consen 241 LVERAAYRLTAPGIGKEVGATLGTNR--LMFQGLFLAPHVVGEALKGAIFAAALFEKLGFEVS-PKPDD-PR-------- 308 (403)
T ss_dssp HHHHHHHHHS-TTTGGGSS--TTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEE-S-TTS-----------
T ss_pred HHHHHHhhhcCCccccccccCcchHH--HHHhHHhhchHHHHHHHHHHHHHHHHHHHcCCcCC-CCCCC-CC--------
Confidence 999887543 334455666655322 23334444456666667777888888999999876 54221 11
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccc
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 252 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~ 252 (324)
.--+.++.+.+.+....|++.++...+.
T Consensus 309 -----~DiIQai~l~~~e~l~~FC~~iQ~~sPV 336 (403)
T PF06838_consen 309 -----SDIIQAIELGSPEKLIAFCQGIQAASPV 336 (403)
T ss_dssp -----SSS-EEEE-SSHHHHHHHHHHHHHTSSS
T ss_pred -----CceEEEEECCCHHHHHHHHHHHHhcCCc
Confidence 2235688999999999999999964433
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=137.25 Aligned_cols=182 Identities=15% Similarity=0.163 Sum_probs=133.8
Q ss_pred hHHHHHHHc---------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEE
Q 020548 3 AISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 3 ai~~~~~~~---------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v 67 (324)
|+..++.++ ++|||+|+++.++|.++...+. ..|.++++++.+ |++++++++ ++++++|
T Consensus 90 al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~-----~~G~~pv~vdvd~~~~~id~~~le~~i-~~~tkaV 163 (438)
T PRK15407 90 ANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII-----QNGLVPVFVDVELPTYNIDASLLEAAV-SPKTKAI 163 (438)
T ss_pred HHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHHc-CcCCeEE
Confidence 555666554 4889999999999999988774 267887777653 799999999 8899999
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc---cCCCCcEEEeCCc--cccccCCCeeEEEEEc-Ch
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP---ARLGADVVVHSIS--KFISGGADIIAGAVCG-PA 140 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~---~~~~~d~~~~S~s--K~~~~~g~r~~G~i~~-~~ 140 (324)
++++ ++|...++++|.++|+++|+++|+|++|+ +...+. ...| |+.++||+ |.+.... ||+++. ++
T Consensus 164 i~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~~~ge---GG~l~t~d~ 236 (438)
T PRK15407 164 MIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHITMGE---GGAVFTNDP 236 (438)
T ss_pred EEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCccccC---ceEEEECCH
Confidence 9886 46778899999999999999999999983 222222 2223 88888885 5454322 577755 56
Q ss_pred hHHHHHHHhhhhhhh----------------------------------ccC--CCCCHHHHHHHhcCcccHHHHHHHHH
Q 020548 141 NLVNSMMDLHQGALM----------------------------------LLG--PTMNPKVAFELSERIPHLGLRMKEHC 184 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~----------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (324)
++.+.++..... +. ..| ..++...+++.+.++..++...++.+
T Consensus 237 ~l~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~ 315 (438)
T PRK15407 237 LLKKIIESFRDW-GRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARK 315 (438)
T ss_pred HHHHHHHHHHHh-CcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654331 10 011 23666777777778888888889999
Q ss_pred HHHHHHHHHHHhCC
Q 020548 185 HRALIFARRMKKLG 198 (324)
Q Consensus 185 ~~~~~l~~~L~~~~ 198 (324)
++++++.+.|+..+
T Consensus 316 ~~a~~y~~~L~~~~ 329 (438)
T PRK15407 316 ANFAYLKEGLASLE 329 (438)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999998764
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=143.46 Aligned_cols=212 Identities=16% Similarity=0.121 Sum_probs=132.0
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCc--c---cc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccc-----c
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPR--A---CN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV-----A 80 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~--~---~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~-----~ 80 (324)
+..+|+..+..|++........... . ++ ..+..++.+|++++++.+ ++++++|+++ |.|++|-+ .
T Consensus 127 ~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aaviiE-Pv~~~gg~~~~~~~ 204 (406)
T PRK12381 127 HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALI-DDQTCAVIVE-PIQGEGGVIPADKA 204 (406)
T ss_pred CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhc-cCCeeEEEEe-CCcCCCCCcCCCHH
Confidence 3478999999998875432111100 0 00 123445556899999999 7789999997 55666653 2
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
.+++|+++|++||+++|+||+|.++.... .....|+ .|++|.+++ |+++ |++++++++++.+..... .
T Consensus 205 ~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~g-G~~i-g~~~~~~~~~~~~~~~~~-~ 279 (406)
T PRK12381 205 FLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALGG-GFPI-GAMLTTEKCASVMTVGTH-G 279 (406)
T ss_pred HHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhhC-CCce-EEEEEcHHHHhhcCCCCC-C
Confidence 47899999999999999999996663211 1224565 579999975 8997 999999998888764332 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.++.++.+.+.++...++.+ ..+...++..++.+++.+.|++.+.+..... +..+.|.++++++
T Consensus 280 ~t~~~~pl~~aaa~a~l~~l-~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~---------------~vrg~Gl~~~~~l 343 (406)
T PRK12381 280 TTYGGNPLASAVAGKVLELI-NTPEMLNGVKQRHDWFVERLNTINARYGLFS---------------EIRGLGLLIGCVL 343 (406)
T ss_pred CCCCCCHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhCCCEE---------------EEecCeEEEEEEe
Confidence 11222222222222222222 1224566778888888888887643211111 1125688999998
Q ss_pred CCH--HHHHHHHHHhhc
Q 020548 234 ETE--EKANRLMNYLQN 248 (324)
Q Consensus 234 ~~~--~~~~~~~~~l~~ 248 (324)
+.. .....+.+.+..
T Consensus 344 ~~~~~~~~~~~~~~l~~ 360 (406)
T PRK12381 344 NAEYAGKAKQISQEAAK 360 (406)
T ss_pred cCchhhHHHHHHHHHHH
Confidence 742 245666666663
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=140.32 Aligned_cols=243 Identities=10% Similarity=0.157 Sum_probs=143.6
Q ss_pred CCCCEEEEcCCCchhHH-HHHhhh-c---Ccccce---eEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---
Q 020548 13 SSGGHVVAARTLYGGTH-ALLTHF-F---PRACNI---TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~-~~~~~~-~---~~~~g~---~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 81 (324)
.++++|++.+..|++.. ..+... . ...++. .+.+.+.+|++++++.+ ++++++|++++++|++|...+
T Consensus 108 ~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l-~~~~a~vi~e~v~~~~G~~~~~~~ 186 (375)
T PRK04260 108 TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALV-NKNTAAVMLELVQGESGVLPADKD 186 (375)
T ss_pred cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhc-CCCeEEEEECCeECCCCCcCCCHH
Confidence 34678999998888633 222100 0 000111 12233345899999988 678899999999999998864
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCC--c-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
++++.++|+++|+++|+||+|.++... + .....|++ |+||.+++ |.|+ |++++++++.+.+..... .
T Consensus 187 ~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-g~~~~~~~~~~~~~~~~~-~ 261 (375)
T PRK04260 187 FVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLAN-GVPV-GAMLAKSSLGGAFGYGSH-G 261 (375)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccC-Ccce-EEEEEcHHHHhhcCCCCC-C
Confidence 899999999999999999999665421 1 11245644 79999974 7997 999999988777753222 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHH----HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI----FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
.++.++.+.+.++...+..... +...++..++.+. +.+.+.+++.....+ +.|.++
T Consensus 262 ~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~ 321 (375)
T PRK04260 262 STFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTVR-------------------GLGYMI 321 (375)
T ss_pred CCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-------------------ccceEE
Confidence 1222233332222223322211 1233333344444 444444433211111 368899
Q ss_pred EEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHH
Q 020548 230 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 230 ~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l 309 (324)
+++++. ....+.+.+.. .|++. .|. ..+.+|+++. ...++++++.+
T Consensus 322 ~~~~~~--~~~~~~~~l~~---~Gi~v-----------~~~-----------------~~~~lR~~~~-~~~t~~~i~~~ 367 (375)
T PRK04260 322 GIETTA--DLSQLVEAARD---KGLIV-----------LTA-----------------GTNVIRLLPP-LTLTKEEIEQG 367 (375)
T ss_pred EEEecC--cHHHHHHHHHh---CCCEE-----------ecC-----------------CCCEEEEcCC-CccCHHHHHHH
Confidence 999852 35567777664 33311 110 1367999997 65556666655
Q ss_pred HHHHHh
Q 020548 310 EKALSR 315 (324)
Q Consensus 310 ~~~l~~ 315 (324)
.+.++.
T Consensus 368 l~~l~~ 373 (375)
T PRK04260 368 IAILSE 373 (375)
T ss_pred HHHHHH
Confidence 555543
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-16 Score=131.51 Aligned_cols=250 Identities=14% Similarity=0.195 Sum_probs=165.2
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
||-+|......|.+...-+++ .+++-.....+|+++|++.++. .-+|+|.++++++.+|.+.|+++|.++++
T Consensus 256 pgcei~SD~gNHASMI~GIrn-----s~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah 330 (570)
T KOG1360|consen 256 PGCEIFSDEGNHASMIQGIRN-----SRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH 330 (570)
T ss_pred CCcEEeccccchHHHHHHhhh-----cCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence 555555555555555444421 2333333344689999998853 34799999999999999999999999999
Q ss_pred hcCCEEEEcCCC-CcCC-CCc--------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCC
Q 020548 91 DKGVTVVVDNTF-SPLV-LSP--------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 160 (324)
Q Consensus 91 ~~~~~~ivD~~~-~~~~-~~~--------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~ 160 (324)
+||++.++||++ .++. ... .-...|++.+++.|.||.- ||||.+..++++.++.+..+. ....+
T Consensus 331 ~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcV----GGYIAat~~LvDmiRSyAaGF--IFTTS 404 (570)
T KOG1360|consen 331 KYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCV----GGYIAATRKLVDMIRSYAAGF--IFTTS 404 (570)
T ss_pred HhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccc----cceehhhhhHHHHHHHhcCce--EEecC
Confidence 999999999997 3332 111 1114799999999999876 599999999999999988753 33344
Q ss_pred CCHHHHHHHhcCccc---H--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 161 MNPKVAFELSERIPH---L--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 161 ~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+.+....-+++..+. - ...++.++++..++++.|.+.|+.+. |. -+-++-+.+.+
T Consensus 405 LPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi-~~-------------------pSHIiPv~vgd 464 (570)
T KOG1360|consen 405 LPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVI-PN-------------------PSHIIPVRVGD 464 (570)
T ss_pred CChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCccc-CC-------------------CcceeeeeccC
Confidence 333333333332222 2 23445568889999999999998654 22 13378888876
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
........+.|-. ++++ +...+-+|.... ....+|+... ...+.+..+.|.++|..
T Consensus 465 a~l~~~~sd~Li~--~h~i-------YvQaINyPTV~r--------------G~E~LRiaPT-P~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 465 AALAKQASDILIS--KHNI-------YVQAINYPTVAR--------------GTERLRIAPT-PHHTPQMMNILVNALLD 520 (570)
T ss_pred HHHHHHHHHHHHH--hcCe-------EEEeccCCcccc--------------cceeeecCCC-CCCCHHHHHHHHHHHHH
Confidence 6556555555442 2232 222222343322 2467898887 77788877777777666
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
...
T Consensus 521 vw~ 523 (570)
T KOG1360|consen 521 VWN 523 (570)
T ss_pred HHH
Confidence 543
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=138.13 Aligned_cols=260 Identities=16% Similarity=0.226 Sum_probs=166.2
Q ss_pred chHHHHHHHc---cC-C-CCEEEEcCCCchhHH-HHH---------hhhcCcccceeEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQL---CS-S-GGHVVAARTLYGGTH-ALL---------THFFPRACNITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~---~~-~-gd~vl~~~p~y~~~~-~~~---------~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++... .. + .-+||.....|++-. ..+ +.+.|..- .+.+++..|++++++++ +++|.+
T Consensus 111 EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~--g~~~vpfnDi~al~~ai-~~~taA 187 (404)
T COG4992 111 EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP--GFRHVPFNDIEALEAAI-DEDTAA 187 (404)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC--CceecCCCCHHHHHHHh-ccCeEE
Confidence 3555555532 22 2 247888887776532 111 11222211 24566677999999999 789999
Q ss_pred EEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++.+...|.+.+ +++++++|++||+++|.||+|.++...- .....|+++ +.|.+|+ |.++ |.
T Consensus 188 vivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~LgG-G~Pi-gA 263 (404)
T COG4992 188 VIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALGG-GFPI-GA 263 (404)
T ss_pred EEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eeccccC-Cccc-ee
Confidence 999999999999964 7899999999999999999998775321 233567777 9999988 6997 88
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
++.++++.+.+.+..++ +..|+++...++..+....-.-+...++.++..+++.+.|++...+. |-+
T Consensus 264 ~la~~~~~~~~~~G~Hg--STfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~--~~v--------- 330 (404)
T COG4992 264 MLATEEIASAFTPGDHG--STFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRY--PLV--------- 330 (404)
T ss_pred eEEchhhhhcCCCCccc--CCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcC--Cce---------
Confidence 87776666666655552 24444444444333222221223455666777778888887764321 110
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
.+..|.|-++.+++.....+..++..++. .|++. .++ .++.|||.
T Consensus 331 ----~~vRG~GLmiGiel~~~~~a~~~~~~~~~---~gvL~-----------~~a-----------------~~~ViR~~ 375 (404)
T COG4992 331 ----KEVRGRGLMIGIELKEPYRARDIVRALRE---EGVLV-----------LPA-----------------GPNVIRFL 375 (404)
T ss_pred ----eeeecceeEEEEEecCcccHHHHHHHHHH---CCeEE-----------ecC-----------------CCCeEEec
Confidence 03347899999999854356778887774 33322 211 24689988
Q ss_pred eccCC----CHHHHHHHHHHHHHhhh
Q 020548 296 VGYLG----TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 296 ~g~~~----~~~~~~~~l~~~l~~~~ 317 (324)
.. +. +.++.++.|+++++...
T Consensus 376 Pp-L~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 376 PP-LVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred CC-ccCCHHHHHHHHHHHHHHHHHhh
Confidence 77 53 44445566666665543
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-16 Score=136.98 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=127.4
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCC---ceEEEEecCCCCcccccChHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGR---TKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~---~~~v~~~~~~nptG~~~~~~~ 84 (324)
.++++|++++.+|++....++. +|++...++. .|+++|++++ +++ |.+|+++.++|++|.+.|+++
T Consensus 108 ~~~~~ii~s~~~H~Sv~ka~~~-----lg~~~~~V~~~~~g~id~~~L~~~i-~~~~~~t~lvv~t~gtt~tG~idpi~~ 181 (380)
T PRK02769 108 FPDGTLYYSKDTHYSVSKIARL-----LRIKSRVITSLPNGEIDYDDLISKI-KENKNQPPIIFANIGTTMTGAIDNIKE 181 (380)
T ss_pred CCCcEEEeCCCceehHHHHHHH-----cCCCCceeccCCCCcCcHHHHHHHH-HhCCCCcEEEEEEeCCCCCcccCCHHH
Confidence 5789999999999999988842 3444333332 2899999999 544 899999999999999999999
Q ss_pred HHHHHHhcC---CEEEEcCCCCcCCCC------ccCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 85 LSRLAHDKG---VTVVVDNTFSPLVLS------PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 85 i~~l~~~~~---~~~ivD~~~~~~~~~------~~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
|.++|+++| +++++|.+|+++... +.+. ++|.+..|.||++++|.+. |+++.+++..+.+.....+
T Consensus 182 I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~--G~l~~r~~~~~~~~~~~~yl 259 (380)
T PRK02769 182 IQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPC--GIVLAKKKYVERISVDVDYI 259 (380)
T ss_pred HHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCc--EEEEEehhhhhhcccCcccc
Confidence 999999998 699999999553221 2222 7999999999999855443 7776666666555321111
Q ss_pred --h-hhccCCCC--CHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 153 --A-LMLLGPTM--NPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 153 --~-~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
. .+..|+.. .....+..+..+ ..+.+..++..++++++.+.|++.+.++
T Consensus 260 ~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~ 315 (380)
T PRK02769 260 GSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPA 315 (380)
T ss_pred CCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 0 01122222 233444444332 3356677778999999999999887744
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-16 Score=125.70 Aligned_cols=222 Identities=18% Similarity=0.229 Sum_probs=143.8
Q ss_pred CHHHHHHhhhcCCceEEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCC-CcCC------CCccCCCCcEEEeC
Q 020548 51 DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTF-SPLV------LSPARLGADVVVHS 120 (324)
Q Consensus 51 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~-~~~~------~~~~~~~~d~~~~S 120 (324)
|.+++. + .+.+.+|+++-|.||||.+. ++.+|..+|++||++++.|++| .+|. ..+....+.+.|.|
T Consensus 170 DF~~l~--i-~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~S 246 (417)
T COG3977 170 DFEHLH--I-GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMS 246 (417)
T ss_pred CHHHcc--c-ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEee
Confidence 666654 2 57899999999999999995 4677788899999999999999 4442 13444578899999
Q ss_pred CccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc--H-HHHHHH-HHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--L-GLRMKE-HCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~~~l~~~L~~ 196 (324)
+|| +|.||.|+ |.++++++++..+..... ......+.+.+..+..+++.-+. + ++.++- |.++.+...+.|++
T Consensus 247 LSK-~GLPG~R~-GIiIane~viqaitnmn~-iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~ 323 (417)
T COG3977 247 LSK-LGLPGSRC-GIIIANEKVIQAITNMNG-IISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRR 323 (417)
T ss_pred hhh-cCCCCcce-eEEEccHHHHHHHHhccc-eeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999 57899996 999999999998877654 33355556666665555543322 2 223332 56666666777766
Q ss_pred C-CC---ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 197 L-GL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 197 ~-~~---~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
. +. .+-.|+ +.-|.|+.+++ +.....++++|+. .| ++..|+.
T Consensus 324 ~lp~~~~~iHkpE-------------------GAIFlWLWf~dLPItt~~LYq~LKa---~G-----------vl~VPG~ 370 (417)
T COG3977 324 YLPEYRCLIHKPE-------------------GAIFLWLWFKDLPITTEELYQRLKA---RG-----------VLMVPGH 370 (417)
T ss_pred hcCccceeeecCC-------------------cceeehhhhccCCCCHHHHHHHHHh---Ce-----------EEEeccc
Confidence 4 32 222233 34455666652 2346678888885 33 3345555
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCC--HHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGT--LDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~--~~~~~~~l~~~l~~~ 316 (324)
.+.-.+.. .+.-.+.++|+|+- .+. .+.-+..|.+.++++
T Consensus 371 ~FFpGl~~----ewpH~hqC~Rmn~~-~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 371 YFFPGLDK----EWPHTHQCMRMNYV-PEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred ccCCCCCC----CCCCccceEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence 55432221 12224688999997 432 233455666666554
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-15 Score=118.77 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=143.2
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh---c---CCceEEEE
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV---Q---GRTKVLYF 69 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~---~---~~~~~v~~ 69 (324)
|=+.++.+++++||.|++....|....-+.. + .|.++..+|.. +++...+.+. + ..+.+.++
T Consensus 88 ~KfavMhal~~~gd~vV~D~~aHYttyvAAE----r-agl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lall 162 (382)
T COG1103 88 AKFAVMHALCKEGDWVVVDSLAHYTTYVAAE----R-AGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALL 162 (382)
T ss_pred hHHHHHHHhccCCCEEEEcCcchHHHHHHHH----h-cCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEE
Confidence 4467788899999999999999887776663 4 78888888753 4555544441 2 34788999
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
+++....|++.|.+.++++|+++|+++++..+| +-+..+..+.++||+++|.||++.. ..++ |++..+.++.+.+.
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAA-s~Pi-Gvl~~~eE~ae~V~ 240 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAA-SAPI-GVLAMSEEWAEIVL 240 (382)
T ss_pred eccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhc-cCCe-eEEeehhHHHHHHH
Confidence 999999999999999999999999999999999 4456677788999999999999976 5665 99999999888876
Q ss_pred Hhhhh-----hhhccCCCCCHHHHHHHhcCcccHHHHHHHH---HHHHHHHHHHHHhCCC
Q 020548 148 DLHQG-----ALMLLGPTMNPKVAFELSERIPHLGLRMKEH---CHRALIFARRMKKLGL 199 (324)
Q Consensus 148 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~~~~~ 199 (324)
....- -.-..|.+........++.+...+.+|+++. .++++++.+.|++++.
T Consensus 241 r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEkigg 300 (382)
T COG1103 241 RRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEKIGG 300 (382)
T ss_pred hhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54310 0112344433333444555666666676663 7789999999999873
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-16 Score=137.77 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=157.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce-eEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
.|++.++.+++++++.+++..-.|+..... ....+ .|. +++.++.+ |+++ + +. ++.|.+++..|.
T Consensus 78 ~~~~~~~~~l~~~~~~~vi~~g~f~~~~~~--~~~~~-~g~~~v~~~~~~~g~~~d~~~----i-~~-~~~V~~~h~~t~ 148 (378)
T PRK03080 78 GAWEMALWSLLGARRVDHLAWESFGSKWAT--DVVKQ-LKLEDPRVLEADYGSLPDLSA----V-DF-DRDVVFTWNGTT 148 (378)
T ss_pred HHHHHHHHhcCCCCcceEEEeCHHHHHHHH--HHHhh-cCCCCceEeccCCCCCCCHhh----c-CC-CCCEEEEecCCc
Confidence 367888888887533334445566653221 11123 577 66666542 4444 3 32 577999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
||...|+++|++ +++|+++++|.++ .+...+.++ ..|++++|.+||+++ +| .|+++.+++.++.+.+...+
T Consensus 149 tG~~~pi~~I~~--~~~g~~~vVDa~q-s~G~~pidv~~iD~~~~s~~K~l~~P~G---~g~l~v~~~~~~~~~p~~~~~ 222 (378)
T PRK03080 149 TGVRVPVARWIG--ADREGLTICDATS-AAFALPLDWSKLDVYTFSWQKVLGGEGG---HGMAILSPRAVERLESYTPAR 222 (378)
T ss_pred cceeccchhhcc--ccCCCeEEEeccc-ccccCCCCHHHCcEEEEehhhhCCCCCc---eEEEEECHHHHHhhhcccCCC
Confidence 999999999999 8899999999997 222223332 379999999999976 45 59999998888877653210
Q ss_pred ---------------hhhccC---CCCCHHHHHH---HhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCC
Q 020548 153 ---------------ALMLLG---PTMNPKVAFE---LSERI---PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLE 207 (324)
Q Consensus 153 ---------------~~~~~~---~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~ 207 (324)
...+.+ +++....... .+..+ ..++.+.++..++++++.++|++.+. .+..+. +
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~-~ 301 (378)
T PRK03080 223 PIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVAD-P 301 (378)
T ss_pred CCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCC-c
Confidence 000111 2222222211 11111 13556667778889999999998874 433221 1
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC---HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHh
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 284 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
.. ..+.+++|.+++ ... .++...+.. .|+ .+..|+..
T Consensus 302 ~~--------------~s~~i~~~~~~~~~~~~~-~~~~~~l~~---~~i-~v~~g~~~--------------------- 341 (378)
T PRK03080 302 AT--------------RSNTSVTLDFVDAQAAVD-AAAVAKLLR---ENG-AVDIEPYR--------------------- 341 (378)
T ss_pred cc--------------cCccEEEEEcCCchHHHH-HHHHHHHHH---cCC-eecccccc---------------------
Confidence 00 134588888875 222 234444432 121 22222210
Q ss_pred cCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 285 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 285 ~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
..++.+|+|++ ..++.++++.+.++|+.+-+
T Consensus 342 --~~~~~vRis~~-~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 342 --DAPNGLRIWCG-PTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred --CCCCcEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 01368999999 99999999999999887643
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=138.49 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=153.7
Q ss_pred CCEEEEcCCCchhH-HHHHhhhcC----cccc---eeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC---
Q 020548 15 GGHVVAARTLYGGT-HALLTHFFP----RACN---ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~-~~~~~~~~~----~~~g---~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~--- 81 (324)
.++|+.....|++. ...+..... ..++ ..+..++..|++++++.+++ +++++|+++++++++|...+
T Consensus 128 ~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~ 207 (401)
T TIGR01885 128 QAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDG 207 (401)
T ss_pred CCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHH
Confidence 36777788888753 333321000 0011 12344556689999998842 56789999999999999976
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|.++|++||+++|+||+|.++... ......|+++ ++|.++++++++ |++++++++++.+..... .
T Consensus 208 ~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~g~~~i-g~v~~~~~i~~~~~~~~~-~ 283 (401)
T TIGR01885 208 YLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSGGVYPV-SAVLADDDVMLTIKPGEH-G 283 (401)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccCCCCCc-EEEEEcHHHHhhccCCCC-C
Confidence 899999999999999999998555321 1123567775 679998866897 999999998887754222 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.++.++.+.+.++...+..+.. +...++..++.+++.+.|++++..+. +. ..+.|.++.+.+
T Consensus 284 ~t~~~~p~~~~aa~a~L~~i~~-~~l~~~~~~~~~~~~~~L~~l~~~~~-~~----------------~~g~g~~~~i~~ 345 (401)
T TIGR01885 284 STYGGNPLACAVAVAALEVLEE-EKLAENAEKLGEIFRDQLKKLPKPII-TE----------------VRGRGLLNAIVI 345 (401)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhccCCce-eE----------------EeecCeeEEEEe
Confidence 1233332222222222221111 12335566778888888988753221 11 114678888888
Q ss_pred CCH---HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 234 ETE---EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 234 ~~~---~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.. ....++.+.+.. .|++. .| ..++.+|++.. ...++++++.+.
T Consensus 346 ~~~~~~~~~~~l~~~l~~---~Gv~v-----------~~-----------------~~~~~lRi~p~-l~~t~~~i~~~l 393 (401)
T TIGR01885 346 DESKTGRTAWDLCLKLKE---KGLLA-----------KP-----------------THGNIIRLAPP-LVITEEQLDEGL 393 (401)
T ss_pred ccCcchhHHHHHHHHHHh---CCEEE-----------Ee-----------------cCCCEEEEeCC-ccCCHHHHHHHH
Confidence 632 256777777763 34311 11 11478999998 666666666666
Q ss_pred HHHHh
Q 020548 311 KALSR 315 (324)
Q Consensus 311 ~~l~~ 315 (324)
++|++
T Consensus 394 ~~l~~ 398 (401)
T TIGR01885 394 EIIKK 398 (401)
T ss_pred HHHHH
Confidence 66654
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-16 Score=136.92 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=163.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHH-hhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~-~l~~~~~~~v~~~~~~n 74 (324)
.|+.+++.+++.+||++++......+.. +...+.+ +|.. ..+..+ +..++++ .+ ++++++|.+++..+
T Consensus 78 ~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~-~g~~-~~~~~~~~~g~~~~~~~~~~~l-~~~~~~V~~th~eT 152 (360)
T PRK05355 78 LQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKK-YGEV-NVAASSEDDGFTYIPPLDEWQL-SDDAAYVHYTSNET 152 (360)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHH-hCCc-eEEecccccCCCCCCChhhccC-CCCCCEEEEccCCC
Confidence 4688888999999998888776554433 2333334 5644 222211 2334444 67 66899999999999
Q ss_pred Cccccc-ChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh-h
Q 020548 75 PTLAVA-NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-H 150 (324)
Q Consensus 75 ptG~~~-~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~-~ 150 (324)
.||... |+++| +|++++||.++ ++...+..+ .|++++|.+|++|++| .|+++.++++++.+.+. .
T Consensus 153 stGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~--~d~~~~ssqK~lgP~G---lg~l~~s~~~l~~~~~~~~ 221 (360)
T PRK05355 153 IDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSK--FGLIYAGAQKNIGPAG---LTIVIVREDLLGRALPSIP 221 (360)
T ss_pred cceEecCccccc------CCCcEEEEcCccccCccCCHHH--ccEEEEeccccccCCc---eEEEEECHHHHhhcccCCC
Confidence 999997 77766 79999999997 222233333 4699999999998777 69999998888776552 1
Q ss_pred hh------hh-hccCCCCCHHHHHHHhcCc-----c-cHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHH
Q 020548 151 QG------AL-MLLGPTMNPKVAFELSERI-----P-HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 151 ~~------~~-~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~ 216 (324)
.+ .. ....+++.....+.+...+ . .++.+.+++.+.+++++++|++.+. ....+. .
T Consensus 222 ~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~-----~----- 291 (360)
T PRK05355 222 SMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAP-----E----- 291 (360)
T ss_pred hHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCh-----h-----
Confidence 00 00 0112333333222222211 2 4667778889999999999999884 111110 0
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
...+.+++|.+++......+.+.+. +.|+++ ..| . . ..+.+|+|+
T Consensus 292 ------~rs~~v~sf~~~~~~~~~~~~~~~~---~~Gi~~-~~~----------~--------------~-~~g~vRiS~ 336 (360)
T PRK05355 292 ------DRSRMNVPFTLADEELDKKFLAEAK---AAGLVG-LKG----------H--------------R-SVGGMRASI 336 (360)
T ss_pred ------hcCCcEEEEEcCChHHHHHHHHHHH---HCCCcc-cCC----------C--------------C-ccCcEEEEC
Confidence 0134578999886533345544443 244421 111 0 0 136899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhhc
Q 020548 297 GYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+ .+++.++++.|.++|+.+.++
T Consensus 337 ~-~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 337 Y-NAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999887543
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=136.21 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=136.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcC-----cccceeEEEecCC------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP-----RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~-----~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~ 70 (324)
.|...++.++++|||+|+..++.++++...-..... .-...+...++.+ |.+++++.+...++++|++.
T Consensus 97 ~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G 176 (399)
T PF00464_consen 97 QANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICG 176 (399)
T ss_dssp HHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE
T ss_pred HHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEEC
Confidence 367788889999999999999888766432110000 0011223333322 89999998867899999998
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-----CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-----LVLSPARLGADVVVHSISKFISGGADIIAGAVCGP----- 139 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-----~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~----- 139 (324)
....| ...|+++++++|++.|+++++|.++ .+ +..+|++. +|++.+|+||+|.||. +|+|+.+
T Consensus 177 ~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~GPr---ggiI~~~~~~~~ 250 (399)
T PF00464_consen 177 ASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLRGPR---GGIILTNKGSKN 250 (399)
T ss_dssp -SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-SSS----EEEEES-SEEE
T ss_pred chhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEEEeeccccccccC---ceEEEEcCCccc
Confidence 75554 5689999999999999999999998 33 35688876 9999999999997665 7999888
Q ss_pred ---------hhHHHHHHHhhhhhhhccCCCCCHHHHHH--HhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 140 ---------ANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 140 ---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
+++.+.+..... .+...++.+...++.+ +.+.. ....++.++..+|++.|.+.|.+.|+++..-.
T Consensus 251 ~~~~~~~~~~~l~~~I~~avf-P~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~gg-- 327 (399)
T PF00464_consen 251 VDKKGKEIDEELAEKIDSAVF-PGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGG-- 327 (399)
T ss_dssp E-TTS-EEEHHHHHHHHHHHT-TTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS--
T ss_pred cCCcccccHHHHHHHhccccC-CCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECC--
Confidence 778888876654 1112223333222222 12212 23567888889999999999999999776422
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
+ ...++++.+. +...+...+++..+
T Consensus 328 -T---------------d~H~vlvd~~~~~~~g~~a~~~Le~~gI 356 (399)
T PF00464_consen 328 -T---------------DNHQVLVDLRSFGIDGKEAEKALEEAGI 356 (399)
T ss_dssp -----------------SSSEEEEEGGGGTS-HHHHHHHHHHTTE
T ss_pred -C---------------CCCeEEEEecccccchHHHHHHHHhcCe
Confidence 1 2347888875 33455666666554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-15 Score=126.91 Aligned_cols=220 Identities=20% Similarity=0.238 Sum_probs=153.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHh--hhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLT--HFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~--~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|...++.++++|||+|+-.+..++++...-. .+..+ . .+...++.+ |.|++++.....++|+|+.-...
T Consensus 99 ~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~-~-~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~Sa 176 (413)
T COG0112 99 QANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGK-L-FNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSA 176 (413)
T ss_pred HHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccce-e-EEeEecccccccCccCHHHHHHHHHHhCCCEEEECccc
Confidence 46778889999999999999988877765441 11111 1 233333332 89999998867899999976533
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSM 146 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l 146 (324)
. -...|.++++++|++.|+++++|.++ .++ ..+|+.. +|++++|.||+|.||. ||+|.++. ++.+++
T Consensus 177 Y--~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlrGPr---GG~Il~~~eel~kki 250 (413)
T COG0112 177 Y--SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLRGPR---GGIILTNDEELAKKI 250 (413)
T ss_pred c--ccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCCCCC---ceEEEeccHHHHHHh
Confidence 3 36689999999999999999999997 444 4678887 9999999999997664 89998874 888888
Q ss_pred HHhhhhhhhccCCCCCHHHHHH--HhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+... .+...|+.+...++-. +.+.+ ..+..+.++..+|++.|.+.|.+.|+++..-. +.
T Consensus 251 n~aVF-Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGg---Td------------- 313 (413)
T COG0112 251 NSAVF-PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGG---TD------------- 313 (413)
T ss_pred hhhcC-CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCC---cc-------------
Confidence 77543 2223333333222221 22222 23567888889999999999999999876433 22
Q ss_pred CcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 224 GFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 224 ~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
.-++.+++. +...++..+++..+
T Consensus 314 --nHl~lVDl~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 314 --NHLVLVDLRSKGLTGKKAEAALERAGI 340 (413)
T ss_pred --ceEEEEEcccCCCCHHHHHHHHHHcCE
Confidence 225666665 35667777777664
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-16 Score=137.96 Aligned_cols=254 Identities=13% Similarity=0.081 Sum_probs=152.4
Q ss_pred chHHHHHHHccC---CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------C-HHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------D-HEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d-~~~l~~~l~~~~~~~v~~~~ 71 (324)
.|++.++.+++. +||+|+.... ...+.....+ .|+++..++.+ + ++..+..+ ++++++|.+++
T Consensus 74 ~a~~~~~~~l~~~~~~~~~i~~g~~-----~~~~~~~a~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~lV~~~h 146 (355)
T cd00611 74 GQFAAVPLNLLGDKGTADYVVTGAW-----SAKAAKEAKR-YGGVVVIVAAKEEGKYTKIPDVETWDL-APDAAYVHYCS 146 (355)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHH-----HHHHHHHHHh-cCCCcEEEecccccCCCCCCCHhhcCC-CCCCCEEEEeC
Confidence 478888888877 5555554222 2211122224 67777776643 3 23333345 67899999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
..|.||...+ ++++.+|++++||.++ +....+..+++ +++.|.+|+||++| .|+++.++++.+.+.+.
T Consensus 147 ~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G---~g~l~~~~~~~~~~~~~ 216 (355)
T cd00611 147 NETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAG---VTVVIVRKDLLGKARKI 216 (355)
T ss_pred CcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCc---eEEEEECHHHHhhcccC
Confidence 9999999843 4455699999999997 33333433334 56677999998777 69999998888766542
Q ss_pred hhh---hh----h-ccCCCCCHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHH
Q 020548 150 HQG---AL----M-LLGPTMNPKVAFELSERIP------HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 150 ~~~---~~----~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~ 214 (324)
... .. . ...+++.....+.+...++ .++.+.+++.++++++.++|++. ++. ..+. . +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~-~~~~-~--~~--- 289 (355)
T cd00611 217 TPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFY-RGPV-D--KR--- 289 (355)
T ss_pred CCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcccc-ccCC-C--HH---
Confidence 110 00 0 1123343322222222222 35566677899999999999998 431 0111 0 00
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
...+.+++|.+++......+. +++.+.|++ ...+ | + ..+.+|+
T Consensus 290 --------~rs~~vvsf~~~~~~l~~~~~---~~~~r~G~~-~~~~-------------~-----------~-~~g~vR~ 332 (355)
T cd00611 290 --------ARSRMNVPFRLGKEELEKEFL---KEAEAAGMI-GLKG-------------H-----------R-SVGGIRA 332 (355)
T ss_pred --------HcCceEEEEEcCChhhhHHHH---HHHHHCCCc-ccCC-------------C-----------c-ccCeEEE
Confidence 013356899987641112222 232334441 1111 1 0 1368999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhh
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|++ .+++.++++.|.++|+++.
T Consensus 333 S~~-~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 333 SIY-NALSLEGVQALADFMKEFQ 354 (355)
T ss_pred Ecc-CCCCHHHHHHHHHHHHHHh
Confidence 999 9999999999999998874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=125.46 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=103.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEecCC-----CH--HHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDIS-----DH--EMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~~~-----d~--~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++++++++|++++++|++.. ..+. . .|.++..++.+ +. +.+++....++++++++++++
T Consensus 28 ~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (170)
T cd01494 28 GANEAALLALLGPGDEVIVDANGHGSRYWVAAE----L-AGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNT 102 (170)
T ss_pred HHHHHHHHHhCCCCCEEEEeecccceehhhHHH----h-cCCEEEEeccCCCCccchhhhhhhhccccCceEEEEEecCc
Confidence 5788888888888999999999999887 4442 3 67888877654 11 245444435789999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC-----CccCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|++|...|.++|+++|+++|+++|+|++|..+.. .+...++|+++.|++|++++++ +|+++.+
T Consensus 103 ~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~---~G~l~~~ 170 (170)
T cd01494 103 TSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEG---GGVVIVK 170 (170)
T ss_pred CCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCCCc---eEEEEeC
Confidence 9999999999999999999999999999954432 2445589999999999998754 5988753
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-15 Score=121.96 Aligned_cols=295 Identities=22% Similarity=0.265 Sum_probs=193.8
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~ 69 (324)
+||.+++..+++|||+.+... .-|....+.+- ..+.. +|+.+..++.. |.+.+...+ +++||+|.+
T Consensus 94 HAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~d-fgi~Y~~v~Lt~~gkiD~~~v~~~i-~~~tkli~I 171 (416)
T COG4100 94 HAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKD-FGIKYKAVPLTADGKIDIQAVKTAI-SDRTKLIGI 171 (416)
T ss_pred hHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHH-hCcceeecccccCCcccHHHHHHhc-CccceEEEE
Confidence 588999999999999987665 55766666652 22223 67777777764 899999999 899999998
Q ss_pred ec----CCCCcccccChHHHHHHHHhc--CCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES----ISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~----~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
.- ..-|+-.+.++++++++.++. +++++||++|+.|. ..|-+.|+|++.+|+-|.-|+.-...|||+.++++
T Consensus 172 QRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~ 251 (416)
T COG4100 172 QRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE 251 (416)
T ss_pred EeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHH
Confidence 64 455666667888888888875 69999999998886 46778899999999999998866667899999999
Q ss_pred HHHHHHHhh--hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++...-.. ++.++..|.++.+. ..+.+++...+....+..+-+......|.+.|+.+. |.. ..+..+++
T Consensus 252 ~ve~~~yRlTaPGIG~e~Gat~~~l--~~myqGlFlAPhvv~qa~Kga~fta~~le~lg~~~~-P~~-~~kRtDlI---- 323 (416)
T COG4100 252 LVEAAAYRLTAPGIGREGGATLYSL--REMYQGLFLAPHVVSQAVKGAHFTARFLEKLGFPVN-PKY-DAKRTDLI---- 323 (416)
T ss_pred HHHhhceeeecCCccccccccHHHH--HHHHhhhccchHHHHHHhhhhHHHHHHHHHcCCCCC-Ccc-cccccchh----
Confidence 998875332 22333444443332 223334433445555566677777888888888654 442 22333333
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccc----ccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
-++.+.+.++.-.|+.+++...+.+.+ .....++++-+.+.+-++.+..+-+.....++.+.++-..
T Consensus 324 ---------Qavkf~~~eKmIaFcqaiQ~aSPi~a~v~p~p~~MPGYed~ViMAaGTFIqGasiElsADgPiRePY~~yv 394 (416)
T COG4100 324 ---------QAVKFGSKEKMIAFCQAIQAASPIDAHVQPEPAYMPGYEDDVIMAAGTFIQGASIELSADGPIREPYIAYV 394 (416)
T ss_pred ---------hheecCCHHHHHHHHHHHhhcCCcccccCcCcccCCCcccceeeeccceeccceeEEecCCCCCCCeEEEE
Confidence 378899999999999999964444432 2234566655554444443222211111112233344444
Q ss_pred eccCCCHHHHHHHHHHHHHhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~ 316 (324)
=| -.+-+...-.+.++++++
T Consensus 395 QG-Glt~~Hvkiav~~a~~~~ 414 (416)
T COG4100 395 QG-GLTYEHVKIAVERALDAL 414 (416)
T ss_pred cC-CccHHHHHHHHHHHHHHh
Confidence 44 444555555566666554
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=132.81 Aligned_cols=194 Identities=18% Similarity=0.098 Sum_probs=120.1
Q ss_pred hHHHHHHHccCCCCEEEEcCC---CchhHHHHHhhhcCccccee--EEEecCC------CHHHHHHhhhcCCceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAART---LYGGTHALLTHFFPRACNIT--TTFVDIS------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p---~y~~~~~~~~~~~~~~~g~~--~~~~~~~------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
|...++.++++|||+|+..+. .|.++............+.. ...+..+ |.+++++++...++++|++.
T Consensus 112 AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~- 190 (475)
T PLN03226 112 ANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG- 190 (475)
T ss_pred HHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-
Confidence 667788899999999999553 33332221111000001211 1122222 89999998854678877663
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-C----CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH--
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLV-- 143 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~-- 143 (324)
.++ +|...|+++|.++|+++|+++++|+++ .++. . .|.+ ++|++++|+||+++||. ||+++.+++..
T Consensus 191 ~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~ 265 (475)
T PLN03226 191 ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPP 265 (475)
T ss_pred cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-CCeEEEecCcccccCCC---ceEEEEchhhccc
Confidence 233 678889999999999999999999998 4443 1 2333 69999999999996554 68887776543
Q ss_pred ---------HH---HHHhhhhhhhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 144 ---------NS---MMDLHQGALMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 144 ---------~~---l~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+. +..... .. +.++ +.....+.+ +..+ ...+.+.++..++++++.+.|++.|+++..+.
T Consensus 266 ~~~g~~~~~d~~~~i~~a~~-~~-~~g~-p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~ 341 (475)
T PLN03226 266 KGQGEGAVYDYEDKINFAVF-PG-LQGG-PHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGG 341 (475)
T ss_pred ccCCCccHHHHHHHhccccC-Cc-cCCC-chHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC
Confidence 11 111111 11 2222 222222222 2212 12445677789999999999999888776443
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=132.93 Aligned_cols=255 Identities=12% Similarity=0.036 Sum_probs=162.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec---------CCCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD---------ISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~---------~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
.|+++++.+++++||++++......+.. +...+.+ +|. +..+. ..++++++ + ++++++|.+++.
T Consensus 67 ~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~-~g~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~th~ 139 (349)
T TIGR01364 67 GQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKK-YGV-VNVVASGKEGNYTKIPDPSTWE--I-SEDAAYVHYCAN 139 (349)
T ss_pred HHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHH-hCC-cEEEeccccCCCCCCCCHHhcC--C-CCCCCEEEEcCC
Confidence 4788999999989999888876554433 2344444 676 43333 12555444 3 568999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.+.||...+ ++++.++++++||.++ ++...+..+ .|++++|.+|+||+|| .|+++.++++++.+.+..
T Consensus 140 ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~--~d~~~~ssqK~lgP~G---lg~l~~s~~~~~~~~~~~ 209 (349)
T TIGR01364 140 ETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSK--FGLIYAGAQKNIGPAG---LTVVIVRKDLLGRASRIT 209 (349)
T ss_pred CCcccEecc-----eecccCCCeEEEEccccccCccCCHHH--ccEEEEecccccCCCc---eEEEEECHHHHhhcccCC
Confidence 999999876 6677789999999996 223333333 4599999999998777 599999988887664321
Q ss_pred hh----h--h--hccCCCCCHHHHHHHhcCc-----c-cHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHH
Q 020548 151 QG----A--L--MLLGPTMNPKVAFELSERI-----P-HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELL 215 (324)
Q Consensus 151 ~~----~--~--~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~ 215 (324)
.. . . ....+++.....+.+...+ . .++.+.+++.++++++.+.|++.+ +...... +.
T Consensus 210 ~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~----~~---- 281 (349)
T TIGR01364 210 PSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVD----PR---- 281 (349)
T ss_pred CCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCC----HH----
Confidence 00 0 0 0111233333222222111 2 366777888999999999999985 3221110 00
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
.....+++|.+++......+.+.+. +.|+ ++..|.. ..+.+|+|
T Consensus 282 -------~rs~~v~sf~~~~~~~~~~~~~~~~---~~Gi-~~~~~~~-------------------------~~g~vRvS 325 (349)
T TIGR01364 282 -------NRSRMNVVFTLGNEELEKRFLKEAE---ERGL-VSLKGHR-------------------------SVGGMRAS 325 (349)
T ss_pred -------HcCCeEEEEecCChhHhHHHHHHHH---HCCC-cccCCcc-------------------------ccCeeEEE
Confidence 0133578899875322234434333 3443 3222210 13689999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++ .+++.++++.|.++|+.+.+
T Consensus 326 ~~-~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 326 IY-NAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred Cc-CCCCHHHHHHHHHHHHHHHH
Confidence 99 99999999999999998764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-15 Score=134.59 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=93.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc-----ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc--C--hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR-----ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA--N--IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~-----~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~--~--~~ 83 (324)
.+|+.....|++........... .++ -.+..++..|++++++.++.+++++|++++.+||.|... . ++
T Consensus 112 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~ 191 (382)
T PLN00144 112 TEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQ 191 (382)
T ss_pred ceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHH
Confidence 57899998888765333211100 000 123556667899999988556899999999999966553 2 78
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+|+++|++||+++|+||+|+++... ......| +.|++|.+++ |.++ |+++.++++++.+..
T Consensus 192 ~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~~-G~pi-g~v~~~~~~~~~~~~ 259 (382)
T PLN00144 192 GLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLAG-GLPI-GAVLVTEKVASAINP 259 (382)
T ss_pred HHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEecccccC-Ccce-EEEEEcHHHHhccCC
Confidence 9999999999999999999766322 1223466 5669999976 7997 999999999888754
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=125.06 Aligned_cols=251 Identities=14% Similarity=0.175 Sum_probs=160.2
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh---cCCceEEEEecCCCCcccccChH
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~~~ 83 (324)
++.+++.|.|.|......|.+...-++ + -.+...+ |.-+++..++ +.+.++|+....-+..|.+.|++
T Consensus 143 ~feail~pedAvfSDeLNhASIIdGir-L-----ckry~h~---dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ 213 (417)
T KOG1359|consen 143 AFEAILTPEDAVFSDELNHASIIDGIR-L-----CKRYRHV---DVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLE 213 (417)
T ss_pred HHHHhcChhhhhhccccccchhhhhhH-H-----Hhhhccc---hhHHHHHHHHHhhhheEEEEEecceeccCCCcccHH
Confidence 334445555555555555554444431 1 1112222 3444444331 55788999999999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCCc-----c---C--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLSP-----A---R--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~~-----~---~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+|.+++++||+++++||+++.+++.+ . . -++|++.++++|.+|+.. |||..+|..++..++....++
T Consensus 214 ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~li~llrqr~Rpy 290 (417)
T KOG1359|consen 214 EISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKPLISLLRQRSRPY 290 (417)
T ss_pred HHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChhHHHHHHhcCCce
Confidence 99999999999999999983332211 1 1 158999999999998655 799999999999998765543
Q ss_pred hhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEE
Q 020548 154 LMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 230 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (324)
...+++.+..........+ .-...+.+.+.+.+++++..+..|+.+...+ -++..
T Consensus 291 --lFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~--------------------hPI~p 348 (417)
T KOG1359|consen 291 --LFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGAS--------------------HPICP 348 (417)
T ss_pred --eecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecCCC--------------------CCccc
Confidence 3333333221111111111 1224456678888999999998888765432 23667
Q ss_pred EEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 231 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 231 ~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+.+.+...+.++.+.+-. .|+ +.-.+.+|..+ ...-.||+.+. .-.++++++++-
T Consensus 349 v~lGda~lA~~~ad~lLk---~Gi-------~Vigfs~PvVP--------------~gkariRVqiS-AaHt~edid~~i 403 (417)
T KOG1359|consen 349 VMLGDARLASKMADELLK---RGI-------YVIGFSYPVVP--------------KGKARIRVQIS-AAHTEEDIDRLI 403 (417)
T ss_pred eecccHHHHHHHHHHHHh---cCc-------eEEeecCCcCC--------------CCceEEEEEEe-hhcCHHHHHHHH
Confidence 778777778888888774 333 22222333332 12357999888 777888888887
Q ss_pred HHHHhh
Q 020548 311 KALSRM 316 (324)
Q Consensus 311 ~~l~~~ 316 (324)
+++..+
T Consensus 404 ~Af~~v 409 (417)
T KOG1359|consen 404 EAFSEV 409 (417)
T ss_pred HHHHHH
Confidence 777655
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=146.15 Aligned_cols=247 Identities=17% Similarity=0.167 Sum_probs=165.8
Q ss_pred HHHHHHHc-cCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 4 ISSVLMQL-CSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 4 i~~~~~~~-~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
.+.+++++ .++ +|+|++++.+|+.+...++..... .|++++.++.++ + +.++++..+++..| |.+|.+.
T Consensus 151 ~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~G~ev~~~~~~~--d----~~~~~~~~vlvq~p-~~~G~i~ 222 (954)
T PRK05367 151 AEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEP-LGIEVVVGDAAK--A----LDHDDVFGVLLQYP-GTSGEVR 222 (954)
T ss_pred HHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHh-CCCEEEEecCcc--C----CCcccEEEEEEecC-CCCeeec
Confidence 34444444 344 489999999999999998776666 899999987643 1 21346666767766 6799999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccc-----cccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF-----ISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~-----~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
|+++|+++||++|+++++|..+ .....+|.++|+|++++|.+|| ||||+ +|+++.++++.+.+....-+.
T Consensus 223 d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~---aGflavr~~~~r~lpgrivG~ 299 (954)
T PRK05367 223 DYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPH---AAYFAVRDAYKRSMPGRIVGV 299 (954)
T ss_pred cHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCC---EEEEEECHHHHhhCCCCeeee
Confidence 9999999999999999999855 3344578889999999999999 88876 699999988877764321110
Q ss_pred h--------------------hcc-CC-CC-CHHHHHHHh-------cCcccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 154 L--------------------MLL-GP-TM-NPKVAFELS-------ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 154 ~--------------------~~~-~~-~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
. ++. +. +. ........+ .+...+....++...++.++.+.|++.+.++..
T Consensus 300 s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~ 379 (954)
T PRK05367 300 SVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVH 379 (954)
T ss_pred ecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 0 111 11 11 111111111 122334444556688888999999887765443
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHH
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (324)
+. ....+.++++ .+..++.+++.. .|+.. .
T Consensus 380 ~~-------------------~f~~~~~~~~--~~~~~i~~~l~~---~gi~~---~----------------------- 409 (954)
T PRK05367 380 DS-------------------FFDTLTVEVG--GDAAAVLARALA---AGINL---R----------------------- 409 (954)
T ss_pred CC-------------------CCCeEEEeCC--CCHHHHHHHHHH---CCcee---c-----------------------
Confidence 32 1235667764 235567777664 33311 0
Q ss_pred hcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 284 LAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 284 ~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
-..++.+|+|++ ..+++++++.|.++|.
T Consensus 410 --~~~~~~l~is~~-e~~t~~did~l~~~l~ 437 (954)
T PRK05367 410 --RVDDDHVGISLD-ETTTREDLAALLAVFG 437 (954)
T ss_pred --cccCCEEEEEec-ccCCHHHHHHHHHHHc
Confidence 112467999999 8999999999999986
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=135.01 Aligned_cols=263 Identities=8% Similarity=0.000 Sum_probs=158.5
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccCh
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 82 (324)
|++.++.+++.+ +.+++....|...........+. .+ ++..++.+..+.++..+ ++++++|.+++..|.||...|+
T Consensus 72 a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~lV~~~h~et~tG~~~pi 147 (361)
T TIGR01366 72 FWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPW-LG-EPIIVTADPGSAPEPQA-DPGVDVIAWAHNETSTGVAVPV 147 (361)
T ss_pred HHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhc-cC-CceEEecCCCCCCCCcc-CCCCCEEEEcccCCccceeccc
Confidence 677777777643 45556566676555555444332 23 44444433223333444 6789999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh------h--
Q 020548 83 PELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG------A-- 153 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~------~-- 153 (324)
++| +|++|+++++|.++ .+...+.++ .+|++++|.+|+++++++ + ++++.++++++++.....+ +
T Consensus 148 ~~I---~~~~g~~~iVDavq-s~g~~~idv~~~D~~~~s~~K~lg~~~G-l-~~~~~s~~~~~~~~~~~~~~~~~p~~~d 221 (361)
T TIGR01366 148 RRP---EGSDDALVVIDATS-GAGGLPVDIAETDVYYFAPQKNFASDGG-L-WLAIMSPAALERIEAIAASGRWVPEFLS 221 (361)
T ss_pred ccc---cccCCCeEEEEcCc-cccCCCCCHHHCCEEEEEchhhcCCCCc-e-EEEEECHHHHhhhhcccCCCCCCchhhh
Confidence 888 58899999999996 333333333 389999999999999864 3 5566777777666532110 0
Q ss_pred ----h-----hccCCCCCHHHHHH---Hhc---CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHH
Q 020548 154 ----L-----MLLGPTMNPKVAFE---LSE---RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 154 ----~-----~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~ 217 (324)
. ....+++.....+. ++. ....++.+.+++.+.++++.++|++.+. ++..+. ....
T Consensus 222 ~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~-~~~~------- 293 (361)
T TIGR01366 222 LPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTD-PGKR------- 293 (361)
T ss_pred HHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC-hhhc-------
Confidence 0 01122333322211 121 1113556667889999999999999885 333221 0000
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
......++| +...+...+.+.+.. .|+ .+. +.. . .+.++.+|+|.+
T Consensus 294 -----s~~v~~v~~--~~g~~~~~v~~~L~~---~gI-~i~----------~~~---~----------~l~~~~vRis~~ 339 (361)
T TIGR01366 294 -----SQVVGTIDF--VDDIDAATVAKILRA---NGI-VDT----------EPY---R----------KLGRNQLRVAMF 339 (361)
T ss_pred -----ccceEEEEC--CCccCHHHHHHHHHH---CCC-eec----------cCc---c----------ccCCCcEEEEcC
Confidence 011234444 333345566666654 233 111 100 0 112468999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhh
Q 020548 298 YLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~~~ 318 (324)
..++.++++.+.++|+.+.+
T Consensus 340 -~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 340 -PAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred -CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999988754
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-15 Score=134.39 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=128.8
Q ss_pred CEEEEcCCCchhHHHHHhhhc--Cc---ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFF--PR---ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~--~~---~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
.+|+.....|++.....-... +. -++ ..+..++.+|++.+++.+..+++++|++++.+...|...+ ++
T Consensus 132 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~ 211 (408)
T PRK04612 132 RVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLA 211 (408)
T ss_pred cEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHH
Confidence 468998888887543221110 00 000 1234556669999999984456778887765554444432 78
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccC
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~ 158 (324)
+|.++|+++|+++|+||+|.++.... ...+.+..+.+++|.+++ |+++ |+++.++++.+.+..... ..++.+
T Consensus 212 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~-G~pi-ga~~~~~~~~~~~~~~~~-~~t~~~ 288 (408)
T PRK04612 212 RVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGG-GFPI-GAMLAGPKVAETMQFGAH-GTTFGG 288 (408)
T ss_pred HHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcC-CCce-EEEEECHHHHhhhcCCCc-CCCCCC
Confidence 99999999999999999996664322 122455666779999975 7997 999888888777754332 122332
Q ss_pred CCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
++. .++++...++.+ +...++..++.+++.+.|++...+..... +..|.|.++.+++..
T Consensus 289 -~p~--~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~---------------~vrg~Gl~~~i~~~~~ 350 (408)
T PRK04612 289 -NPL--AAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFA---------------QVRGRGLMLGAVLAPA 350 (408)
T ss_pred -CHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCee---------------eeeccceEEEEEecCc
Confidence 222 222222222222 24455667777778777776532221111 223689999999852
Q ss_pred -HHHHHHHHHHhhc
Q 020548 236 -EEKANRLMNYLQN 248 (324)
Q Consensus 236 -~~~~~~~~~~l~~ 248 (324)
......+++.+..
T Consensus 351 ~~~~a~~i~~~l~~ 364 (408)
T PRK04612 351 HAGQAGAILDLAAE 364 (408)
T ss_pred hhhHHHHHHHHHHH
Confidence 2345666666663
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-15 Score=132.99 Aligned_cols=97 Identities=13% Similarity=0.207 Sum_probs=73.8
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc----c-CCCCcEEE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~-~~~~d~~~ 118 (324)
++++++.+. .+++++|++++.++..|...+ +++|.++|+++|+++|+||+|+++.... . ..+.+..+
T Consensus 184 ~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi 263 (425)
T PRK08088 184 IASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADL 263 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCE
Confidence 566888773 256889999986665566544 8899999999999999999996653221 1 22444557
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.|+||.++ +|.|+ ||+++++++++.+....
T Consensus 264 ~s~sK~l~-~G~ri-g~v~~~~~~~~~~~~~~ 293 (425)
T PRK08088 264 TTFAKSIA-GGFPL-AGVTGRAEVMDAIAPGG 293 (425)
T ss_pred EEEecccc-CCCcc-eeeEecHHHHhhcCCCC
Confidence 88999997 58997 99999999998886543
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-14 Score=117.00 Aligned_cols=194 Identities=16% Similarity=0.179 Sum_probs=144.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+++++..++.|||+|++....--+ ..+..+..+ +|+++..++.+ .++.+.+++.++++++|++++...-|
T Consensus 79 ~g~E~al~N~lePgd~vLv~~~G~wg--~ra~D~~~r-~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 79 SGWEAALVNLLEPGDNVLVVSTGTWG--QRAADCARR-YGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSST 155 (385)
T ss_pred chHHHHHHhhcCCCCeEEEEEechHH--HHHHHHHHh-hCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccc
Confidence 57888999999999998887743322 222234445 89999888665 79999999978899999999999999
Q ss_pred ccccC-hHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 77 LAVAN-IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 77 G~~~~-~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
|...| ++.+.++||+|+++++||.+- ++..+...++++|+......|.+++|.+- +.++.++...+.++...+.
T Consensus 156 gV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GL--siisfS~ka~~~~~~rK~~~ 233 (385)
T KOG2862|consen 156 GVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGL--SIISFSDKALEAIRDRKTKP 233 (385)
T ss_pred cccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCc--ceeecCHHHHHHHhhccCCc
Confidence 99999 778889999999999999985 44455666779999999999999987544 6677787778888764431
Q ss_pred ---------hhhccCC---------CCCHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 020548 153 ---------ALMLLGP---------TMNPKVAFELSER-----IPHLGLRMKEHCHRALIFARRMKKLGLK 200 (324)
Q Consensus 153 ---------~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 200 (324)
.+.+++. +++....+.+... -+.+++..++++++.+++...|+++|.+
T Consensus 234 ~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq 304 (385)
T KOG2862|consen 234 VSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQ 304 (385)
T ss_pred eEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 1112221 2222221111111 2347789999999999999999999884
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=135.37 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=96.8
Q ss_pred hHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhh------------cC---cccceeEEEecCCCHHHHHHhhhc--CC
Q 020548 3 AISSVLMQL--CSSGGHVVAARTLYGGTHALLTHF------------FP---RACNITTTFVDISDHEMVNSAIVQ--GR 63 (324)
Q Consensus 3 ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~------------~~---~~~g~~~~~~~~~d~~~l~~~l~~--~~ 63 (324)
|+..+++.. ....++|+...+.|++....+... .+ ...+.....++..|++++++.+.+ ++
T Consensus 116 A~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 195 (423)
T TIGR00713 116 ATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEE 195 (423)
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCc
Confidence 455555432 124589999999999965432110 00 000112334445589999998832 57
Q ss_pred ceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 64 TKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 64 ~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
+++|++++ ++| +|.+.+ +++|.++|++||+++|+||+|.++.... .....|++ +++|.++ +|+|+
T Consensus 196 ~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~-~G~pi 271 (423)
T TIGR00713 196 IAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG-GGLPV 271 (423)
T ss_pred EEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc-CCCce
Confidence 89999975 555 788865 7899999999999999999996663211 12235644 6999998 58997
Q ss_pred EEEEEcChhHHHHHHH
Q 020548 133 AGAVCGPANLVNSMMD 148 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~ 148 (324)
|++++++++++.+..
T Consensus 272 -g~v~~~~~i~~~~~~ 286 (423)
T TIGR00713 272 -GAFGGRREIMERLAP 286 (423)
T ss_pred -eeeeEHHHHHHhhCc
Confidence 999999999888864
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=129.79 Aligned_cols=206 Identities=14% Similarity=0.026 Sum_probs=138.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
-+|+++..+|.+....++ .+|++++.++.+ |+++|++++ ++++.+|+++..+|.||.+.|+++|+++|
T Consensus 139 ~~ii~s~~~H~sv~ka~~-----~lg~~v~~i~~d~~~~~vd~~~L~~~i-~~~t~lV~~t~g~t~tG~idpi~~I~~i~ 212 (431)
T TIGR01788 139 PNLVMGSNVQVCWEKFAR-----YFDVELREVPMDPGRYVIDPEQVVEAV-DENTIGVVCILGTTYTGEYEDVKALNDAL 212 (431)
T ss_pred cEEEEcCcchHHHHHHHH-----HcCceeEEEecCCCceeeCHHHHHHHH-hhCCeEEEEEeCCCCCcccCCHHHHHHHH
Confidence 379999999999988773 256666665542 789999999 78899999999999999999999999999
Q ss_pred Hhc------CCEEEEcCCCCcCC----CC--cc---CCCCcEEEeCCcccc-ccCCCeeEEEEEcCh-h-HHHHHHHhhh
Q 020548 90 HDK------GVTVVVDNTFSPLV----LS--PA---RLGADVVVHSISKFI-SGGADIIAGAVCGPA-N-LVNSMMDLHQ 151 (324)
Q Consensus 90 ~~~------~~~~ivD~~~~~~~----~~--~~---~~~~d~~~~S~sK~~-~~~g~r~~G~i~~~~-~-~~~~l~~~~~ 151 (324)
+++ |+++++|.+|+++. .. +. ..++|.+..|.||++ ++.| .|+++.++ + +.+.+.....
T Consensus 213 ~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g---~G~l~~r~~~~l~~~~~~~~~ 289 (431)
T TIGR01788 213 DEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG---VGWVIWRDEEALPEELIFHVN 289 (431)
T ss_pred HHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC---cEEEEEeChHHcchhheeccc
Confidence 999 99999999996432 11 11 226889999999987 4444 37776543 2 2232211100
Q ss_pred hhh------hccCCCC--CHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhc
Q 020548 152 GAL------MLLGPTM--NPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 152 ~~~------~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.. +..++.. .....+..+.. ...+....++..++++++.+.|++.+ +++..|.
T Consensus 290 yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~--------------- 354 (431)
T TIGR01788 290 YLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG--------------- 354 (431)
T ss_pred ccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC---------------
Confidence 000 0111111 11222333222 23466777888999999999999987 4655442
Q ss_pred cCCCcceEEEEEeCC----HHHHHHHHHHhhc
Q 020548 221 KEYGFGGLLCLDMET----EEKANRLMNYLQN 248 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~----~~~~~~~~~~l~~ 248 (324)
...++++|++++ ..+...+.+.|..
T Consensus 355 ---~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~ 383 (431)
T TIGR01788 355 ---SGIPLVAFKLKDDADPGYTLYDLSHRLRE 383 (431)
T ss_pred ---CCceEEEEEeCCCCCCCcCHHHHHHHHHH
Confidence 135689999874 2334566666663
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=128.01 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=126.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC--CceEEEEecCCCCcccccChHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++.+|+++.-.|++....++ .+|..+..++.+ |+++|++++.+. ++.+|+++..+|++|.+.|+++|+
T Consensus 110 ~~~~vi~s~~~H~Sv~kaa~-----~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~ 184 (374)
T PLN03032 110 PDGILYASRESHYSVFKAAR-----MYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRIL 184 (374)
T ss_pred CCcEEEeCCCceeHHHHHHH-----HcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHH
Confidence 45689999999999998874 245545455443 899999999332 577888899999999999999999
Q ss_pred HHHHhcC-----CEEEEcCCCCcCCCC--------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 87 RLAHDKG-----VTVVVDNTFSPLVLS--------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 87 ~l~~~~~-----~~~ivD~~~~~~~~~--------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
++|+++| +++++|.+|++.... ....++|.++.|.||+++.|-+ +|+++.+++..+.+.....+.
T Consensus 185 ~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g--~G~ll~r~~~~~~~~~~~~Yl 262 (374)
T PLN03032 185 RILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMP--CGVALTRKKHVKALSQNVEYL 262 (374)
T ss_pred HHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcC--eEEEEEEchhhHhhccCCccc
Confidence 9999996 589999999443211 1123689999999999874433 377777666665543221110
Q ss_pred ----hhccCCCC--CHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 154 ----LMLLGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 154 ----~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
.+..|+-. ....++..+. +.+.+.+.+++..++++++.+.|++.+..+
T Consensus 263 ~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~ 318 (374)
T PLN03032 263 NSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTC 318 (374)
T ss_pred CCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 11222222 2334444433 345577888889999999999999987743
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=133.85 Aligned_cols=246 Identities=17% Similarity=0.224 Sum_probs=145.5
Q ss_pred EEEEcCCCchhHHHHHhh----------hcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC---
Q 020548 17 HVVAARTLYGGTHALLTH----------FFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~----------~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~--- 81 (324)
.|+.....|++....... +.+.. ..+..++..|++.+++.++. +++++|++++++|++|.+.|
T Consensus 168 ~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~ 245 (474)
T PLN02624 168 IIVSCCGCFHGRTLAAISMSCDNEATRGFGPLL--PGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDG 245 (474)
T ss_pred EEEEECCCcCCCCHHHhhcCCCccccccCCCCC--CCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHH
Confidence 577777778765322211 11110 12344556689999998842 56899999999999999876
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|.++|++||+++|+||+|.++.... .....|+++ ++|.++++++++ |+++.+++++..+.+... .
T Consensus 246 ~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~--lsK~lggG~~pi-gav~~~~~i~~~~~~~~~-~ 321 (474)
T PLN02624 246 YLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVI--LGKALGGGVIPV-SAVLADKDVMLCIKPGEH-G 321 (474)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEE--ecccccCCCCcc-eeeeecHHHHhHhccCCc-C
Confidence 9999999999999999999996653211 123467666 689999877897 999988888777654332 1
Q ss_pred hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 233 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 233 (324)
.+++++.+...++...+..+.. ....++..++.+.+.+.|++...+. |.... ...+.|.++.+.+
T Consensus 322 ~T~~g~pl~~aaa~aaLe~l~~-~~l~~~~~~~~~~l~~~L~~l~~~~--~~~i~------------~vrg~G~~~~i~l 386 (474)
T PLN02624 322 STFGGNPLASAVAMAALQVVQD-EKLAERSAKLGQELRDQLQKIQKQF--PKLIK------------EVRGRGLLNAVVL 386 (474)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHHhC--CCceE------------EEEeeEEEEEEEe
Confidence 1222322222222222221111 1233344555666666666542111 11000 0114677888888
Q ss_pred CC----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHH
Q 020548 234 ET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 234 ~~----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l 309 (324)
+. ......+.+.+.. .|++. .|. .++.+||++. ...++++++.+
T Consensus 387 ~~~~~~~~~a~~~~~~L~e---~GV~v-----------~p~-----------------~~~~lR~~p~-l~~t~e~id~~ 434 (474)
T PLN02624 387 NSPKLGPVSAYDVCLKLKE---RGLLA-----------KPT-----------------HDTIIRLAPP-LSISEDELQEC 434 (474)
T ss_pred cCCCcChHHHHHHHHHHHh---CCeEE-----------ecC-----------------CCCEEEEECC-ccCCHHHHHHH
Confidence 63 2345667777653 34311 111 1478999987 65555555555
Q ss_pred HHHHHh
Q 020548 310 EKALSR 315 (324)
Q Consensus 310 ~~~l~~ 315 (324)
.+.|++
T Consensus 435 l~~L~~ 440 (474)
T PLN02624 435 SKALSD 440 (474)
T ss_pred HHHHHH
Confidence 554443
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-14 Score=119.30 Aligned_cols=183 Identities=12% Similarity=0.090 Sum_probs=122.9
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-CCceEEEE-ecCCCCcccccC-
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-GRTKVLYF-ESISNPTLAVAN- 81 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-~~~~~v~~-~~~~nptG~~~~- 81 (324)
..|...|.+++|+|+++..++. . .|.++..++.- |.+.+.+.+++ +.-.+|++ ..+|||||.-++
T Consensus 117 ~~~~~~vwis~PtW~NH~~If~----~-aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~ 191 (396)
T COG1448 117 FFPDATVWISDPTWPNHKAIFE----A-AGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTE 191 (396)
T ss_pred hCCCceEEeCCCCcHhHHHHHH----h-cCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCH
Confidence 4566789999999999999985 2 67777665542 78888877743 33346666 458999999864
Q ss_pred --hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----------CCC-CcEEEeCCccccccCCCeeEEEEE--cChhHHHHH
Q 020548 82 --IPELSRLAHDKGVTVVVDNTFSPLVLSPA----------RLG-ADVVVHSISKFISGGADIIAGAVC--GPANLVNSM 146 (324)
Q Consensus 82 --~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----------~~~-~d~~~~S~sK~~~~~g~r~~G~i~--~~~~~~~~l 146 (324)
..+|+++.++.+.+.++|-+|.+|..... ..+ --+++.|+||.||.-|-|+|++.+ .+.+....+
T Consensus 192 ~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v 271 (396)
T COG1448 192 EQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRV 271 (396)
T ss_pred HHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHH
Confidence 66888888999999999999987754311 112 269999999999999999844442 344444444
Q ss_pred HHhhhhhhhccCCCCCHHH---HHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 147 MDLHQGALMLLGPTMNPKV---AFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
........+..-++|.... .+..+.+ ...+...++|+.++|+.+++.|++++.
T Consensus 272 ~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~ 334 (396)
T COG1448 272 LSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGA 334 (396)
T ss_pred HHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4322212222233333222 2223322 123556777889999999999999643
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=129.28 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=130.1
Q ss_pred hHHHHHHHcc--C-CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcC---CceEEE
Q 020548 3 AISSVLMQLC--S-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQG---RTKVLY 68 (324)
Q Consensus 3 ai~~~~~~~~--~-~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~---~~~~v~ 68 (324)
++.+++.++- + +||+|+++.-+|.+....+ ...|.++++++. .|++++++++ ++ +..+++
T Consensus 136 al~laL~alr~~~~~gd~VI~p~~th~S~~kAi-----~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aI-t~~~~kai~~V 209 (444)
T TIGR03531 136 SLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAI-----STAGFEPRVIETVLDGDELTTDVEDIERAI-EEIGPDNILCV 209 (444)
T ss_pred HHHHHHHHcCCcCCCCCEEEEECcChHHHHHHH-----HHcCCeEEEeeeeecCcCCCcCHHHHHHHH-HhccCCCEEEE
Confidence 3445555543 2 5899999999999988887 347888888883 1899999999 54 455666
Q ss_pred EecC-CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCC-CcEEEeCCccccccCCCeeEEEEEc-
Q 020548 69 FESI-SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLG-ADVVVHSISKFISGGADIIAGAVCG- 138 (324)
Q Consensus 69 ~~~~-~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~-~d~~~~S~sK~~~~~g~r~~G~i~~- 138 (324)
+.++ .+++|...|+++|+++|++||+++|+|++|+.... .....| +|++++|+||++..|++ ||+++.
T Consensus 210 v~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~ 287 (444)
T TIGR03531 210 LSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVG--GAIIYSF 287 (444)
T ss_pred EEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCC--EEEEEEC
Confidence 6555 45566889999999999999999999999954221 122333 69999999999988664 366644
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
++++.+.+.....+ ...+++.+ .++. ...+.+.+.+.++++.++++++.+.|++..
T Consensus 288 d~el~~~i~~~y~g---~~~~s~~~-~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~ 345 (444)
T TIGR03531 288 DENFIQEISKSYPG---RASASPSL-DVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLA 345 (444)
T ss_pred CHHHHHHHHHhccC---CCCChHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888765331 11222322 2332 223456678888889999999999988763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-14 Score=129.15 Aligned_cols=250 Identities=15% Similarity=0.141 Sum_probs=153.0
Q ss_pred CEEEEcCCCchhHHHHHhhhcC-----ccc---ceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccC-
Q 020548 16 GHVVAARTLYGGTHALLTHFFP-----RAC---NITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN- 81 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~-----~~~---g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~- 81 (324)
.+|+.....|++.......... ..+ ...+..++.+|.+++++.++. +++.+|++++.+...|...+
T Consensus 164 ~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~ 243 (442)
T TIGR03372 164 FTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243 (442)
T ss_pred cEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCC
Confidence 5788889888876433221100 001 112355666688888877732 56899999999988898877
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~ 150 (324)
++++.++|++||+++|+||++.++... -.....|+++ ++|.+++ | .++ |.++.++++++.+....
T Consensus 244 ~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~-G~~Pi-gavv~~~~i~~~~~~~~ 319 (442)
T TIGR03372 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG-GVMPI-GATIATEAVFSVLFDNP 319 (442)
T ss_pred HHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC-Ccccc-eEEEecHHHHHhhhccC
Confidence 899999999999999999999666321 1223578776 9999976 5 576 77778888887774221
Q ss_pred hhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 151 QGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.......++++...+++ +..++.++ ...++..+.-+++.+.|++...+ +|.... +..|.|.+
T Consensus 320 ~~~~~T~~gnp~~~Aaa--~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~--~~~~i~------------~vRG~Gl~ 383 (442)
T TIGR03372 320 FLHTTTFGGNPLACAAA--LATINELLEKNLPAQAAIKGDFLLDGFQQLAAE--YPDLII------------EARGKGLL 383 (442)
T ss_pred ccccCCCCCCHHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh--CCCceE------------EEecceEE
Confidence 10111223333333332 22233322 23344556666677776654221 111000 22368999
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+.+++.+......+.+.+.. .|++. .+. +...+.+|+++. ..-++++++.
T Consensus 384 ~giel~~~~~~~~i~~~l~~---~Gvl~-----------~~~---------------~~~~~~lr~~Pp-l~~t~~~id~ 433 (442)
T TIGR03372 384 MAIEFRDNEIGYAFAKELFQ---QNILV-----------AGT---------------LNNAKSIRIEPP-LTITIEQCAL 433 (442)
T ss_pred EEEEeCChHHHHHHHHHHHH---CCcEE-----------eec---------------CCCCCEEEEECC-cccCHHHHHH
Confidence 99999855455667777664 33311 110 112368999999 7777777777
Q ss_pred HHHHHHh
Q 020548 309 FEKALSR 315 (324)
Q Consensus 309 l~~~l~~ 315 (324)
+.+++++
T Consensus 434 ~~~~l~~ 440 (442)
T TIGR03372 434 VIKAAKD 440 (442)
T ss_pred HHHHHHH
Confidence 7777654
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-14 Score=130.29 Aligned_cols=251 Identities=13% Similarity=0.122 Sum_probs=146.8
Q ss_pred CCEEEEcCCCchhHHHHHhhhc-----Ccccce---eEEEecC--------CCHHHHHHhhhc-----CCceEEEEecCC
Q 020548 15 GGHVVAARTLYGGTHALLTHFF-----PRACNI---TTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESIS 73 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~-----~~~~g~---~~~~~~~--------~d~~~l~~~l~~-----~~~~~v~~~~~~ 73 (324)
..+|+.....|++......... ...++. .+..++. ++++.+++.+.+ +++++|++++.+
T Consensus 125 r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~ 204 (412)
T TIGR02407 125 RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQ 204 (412)
T ss_pred CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEecccc
Confidence 3678888888887654332110 010111 2233333 236778887732 467999999999
Q ss_pred CCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCC-------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLV-------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~-------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
++.|... | +++|.++|+++|+++|+||+++++. ........|+++ ++|++++.|.++ |+++.++++
T Consensus 205 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G~pi-gav~~~~~~ 281 (412)
T TIGR02407 205 GEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYGLPL-ALTLIKPEL 281 (412)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhccCCccce-eEEEEchhh
Confidence 9999864 2 7899999999999999999997663 222344678775 789997658997 999888775
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHH-HHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVA-FELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+..... . ...++++...++ ...+.. +.. ....++..+..+++.+.|++..... |....
T Consensus 282 -~~~~~~~~-~-~T~~gnpl~~aaa~a~l~~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~--~~~~~------------ 343 (412)
T TIGR02407 282 -DVWKPGEH-N-GTFRGNNLAFVTATAALEYYWSD-DAFEKAVQRKSEIIQERLDRIVAEY--PELIK------------ 343 (412)
T ss_pred -hccCCCcc-C-CCCCccHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhhC--CCceE------------
Confidence 44322211 1 122233332222 222221 111 2233444555566666655421110 10000
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~ 300 (324)
...+.|.++++++++......+...+.. .|++. .+. +..++.||++.. ..
T Consensus 344 ~vrg~Gl~~~l~l~~~~~~~~~~~~~~~---~Gv~v-----------~~~---------------~~~~~~lr~~p~-l~ 393 (412)
T TIGR02407 344 QVRGRGLMQGIECGDGDLAGKIAKAAFE---NGLII-----------ETS---------------GPNDEVIKLLPP-LT 393 (412)
T ss_pred eeecceeEEEEEecChHHHHHHHHHHHH---CCCEE-----------ecc---------------CCCCCEEEEECC-CC
Confidence 1125788999999865556677777663 33311 110 112478999999 77
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
.++++++.+.++++..
T Consensus 394 ~t~~~i~~~~~~l~~~ 409 (412)
T TIGR02407 394 IDEETLQQGLDILEQA 409 (412)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777776666554
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=138.86 Aligned_cols=250 Identities=19% Similarity=0.146 Sum_probs=158.9
Q ss_pred hHHHHHHHc-cCCC--CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 3 AISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~-~~~g--d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
+.+.+++++ +++| |+|++++.+|+.+...++..... .|++++.++.++.+ .. .+.+..+++..| |.+|.+
T Consensus 177 aaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~-~GieV~~v~~~~~~----~~-~~~v~~vlvq~P-~~~G~v 249 (993)
T PLN02414 177 AAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADG-LGLEVVVADEKDFD----YS-SGDVCGVLVQYP-ATDGEV 249 (993)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhh-cCCEEEEecchhhc----cc-cCceEEEEEecC-CCCeEE
Confidence 344444444 3444 78999999999999999877766 89999998754322 12 334555655555 459999
Q ss_pred cChHHHHHHHHhcCCEEEE--cCCCCcCCCCccCCCCcEEEeCCcccc-----ccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 80 ANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKFI-----SGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~~-----~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.|+++|.++||++|+++++ |........+|.++|+|+++++.+||. ||| . .|+++.++++.+.+-...-+
T Consensus 250 ~dv~~I~~~ah~~GaL~iVaad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP--~-aGflavr~~~~r~~PgriVG 326 (993)
T PLN02414 250 LDYAEFVKNAHANGVKVVMATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGP--H-AAFLATSQEYKRLMPGRIIG 326 (993)
T ss_pred cCHHHHHHHHHHcCCEEEEEECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCC--C-eeEEEECHHHHhhCCCcccC
Confidence 9999999999999999999 433222223577889999999999997 443 3 49999988876644211111
Q ss_pred h--------------------hhc-cCCC-C-C--HHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 153 A--------------------LML-LGPT-M-N--PKVAFEL-----SERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 153 ~--------------------~~~-~~~~-~-~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
. .++ .+.+ . . .+.+.+. ..+...+....++..+++.++.+.|++.|.++.
T Consensus 327 ~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~ 406 (993)
T PLN02414 327 VSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQ 406 (993)
T ss_pred cccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 0 000 1111 1 0 1111110 111133444456678888999999988776543
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.+. ....+.|.++. ..++.+++.. .|+ .+.
T Consensus 407 ~~~-------------------~f~~vt~~~~~---~~~v~~~L~~---~gI---~l~---------------------- 436 (993)
T PLN02414 407 SLP-------------------FFDTVKVKCSD---ADAIADAAAK---VGI---NLR---------------------- 436 (993)
T ss_pred CCC-------------------CcCeEEEecCC---HHHHHHHHHH---CCC---eeE----------------------
Confidence 332 12367777753 2556666653 222 110
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++.+|+|++ ..+++++++.|.++|...
T Consensus 437 ---~~~~~~lrvs~~-e~~T~edId~L~~~l~~~ 466 (993)
T PLN02414 437 ---VVDANTVTVSFD-ETTTLEDVDKLFKVFAGG 466 (993)
T ss_pred ---EecCCeEEEEee-ccCCHHHHHHHHHHHccc
Confidence 011367999999 999999999999999644
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-14 Score=126.88 Aligned_cols=245 Identities=14% Similarity=0.144 Sum_probs=145.5
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc-----ccc---eeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR-----ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~-----~~g---~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
.+|+..+..|++.....-..... .++ ..+...+..|++++++.+ ++++++|+++++++..|...+ ++
T Consensus 125 ~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epv~~~gG~~~~~~~~l~ 203 (395)
T PRK03715 125 YEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLI-TDKTVAVMLEPVQGEGGVIPATREFMQ 203 (395)
T ss_pred cEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHc-CCCceEEEEeCCcCCCCCccCCHHHHH
Confidence 57888888887653222111110 000 012223345899999999 678999999999999998876 99
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
+|.++|+++|+++|+||+++++.. .-....+|+++ ++|.+++ |.++ |.+++++++.. +..... ..++
T Consensus 204 ~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t--~gK~lg~-G~p~-~av~~~~~i~~-~~~~~~-~~T~ 277 (395)
T PRK03715 204 QLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMT--LGKGIGG-GVPL-AALLAKAEVAV-FEAGDQ-GGTY 277 (395)
T ss_pred HHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceee--ehhhhhC-Ccce-EEEEEcccccc-ccCCCc-CCCC
Confidence 999999999999999999976632 11233567755 8899987 6886 77777777642 211111 1122
Q ss_pred cCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 157 LGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
++. +..++.++..++.+ +...++..++.+++.+.|++...+...+. ..|.|.++.+++.
T Consensus 278 -~g~--pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~----------------vrG~Glm~~i~l~ 338 (395)
T PRK03715 278 -NGN--PLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEG----------------ERGEGLLRALLLG 338 (395)
T ss_pred -CCC--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCCcCe----------------EEcceeEEEEEec
Confidence 222 33333333333332 23456667777788887776432111111 1257889999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+. ....+.+.+......|++. . ...++.+|+++. ...++++++.+.++|+
T Consensus 339 ~~-~~~~~~~~~~~~~~~Gi~~-----------~-----------------~~~~~~lR~~p~-l~~t~~ei~~~~~~l~ 388 (395)
T PRK03715 339 KD-IGPQIVEKARDMQPDGLLL-----------N-----------------APRPNLLRFMPA-LNVTTEEIDQMIAMLR 388 (395)
T ss_pred Cc-hHHHHHHHHHhccCCCEEE-----------e-----------------ecCCCEEEEeCC-cccCHHHHHHHHHHHH
Confidence 42 2233333333211113211 0 011367999999 7777777777666665
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
+.
T Consensus 389 ~~ 390 (395)
T PRK03715 389 SV 390 (395)
T ss_pred HH
Confidence 54
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-13 Score=116.73 Aligned_cols=241 Identities=16% Similarity=0.145 Sum_probs=138.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh-cCCceEEEEec-CCCCcccccChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV-QGRTKVLYFES-ISNPTLAVANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~-~~~~~~v~~~~-~~nptG~~~~~~~i~~l~ 89 (324)
=+.+++.|.|..+..+++ .+|++++.|++. |.+.+++.++ ++.+|.+++.+ -+||||.+++-+-+.++|
T Consensus 125 vKfLCPvPGYDRHFai~E-----~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA 199 (425)
T PF12897_consen 125 VKFLCPVPGYDRHFAITE-----HFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLA 199 (425)
T ss_dssp -EEEEEES--HHHHHHHH-----HCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHH
T ss_pred ceEEecCCCchHHHHHHH-----hhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHh
Confidence 479999999999999985 489999999874 9999999873 57889888855 899999998755444444
Q ss_pred ----HhcCCEEEEcCCC--CcCCCC-cc----CC----------CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 90 ----HDKGVTVVVDNTF--SPLVLS-PA----RL----------GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 90 ----~~~~~~~ivD~~~--~~~~~~-~~----~~----------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
.+.+..|+.|++| .++..+ +. +. +..+...|+||.- .+|..+ +++.++++-++.+++
T Consensus 200 ~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGv-a~~aaS~~Nl~~~~~ 277 (425)
T PF12897_consen 200 AMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGV-AFFAASEANLAWIKK 277 (425)
T ss_dssp HS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS--EEEEE-HHHHHHHHH
T ss_pred cCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcce-eeeecCHHHHHHHHH
Confidence 4579999999999 444211 11 11 4679999999965 346665 999888877777766
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcc-cHHHHHHHH----HHHHHHHHHHHHhC-----CC-ceeCCCCCCCchhHHHHH
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEH----CHRALIFARRMKKL-----GL-KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~~L~~~-----~~-~~~~p~~~~~~~~~~~~~ 217 (324)
... ..+.+....+|+....++...+ .+...++++ ..+.+.+.+.|++. +. .+..|.
T Consensus 278 ~~~-~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~------------ 344 (425)
T PF12897_consen 278 HLS-VQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK------------ 344 (425)
T ss_dssp HHH-HH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S------------
T ss_pred Hhc-CceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC------------
Confidence 544 2224445577777777777766 566555554 44455555555543 33 677776
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC--CCCeEEEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMS 295 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iR~s 295 (324)
+|+|++|...+. .+.++++..+. .|+.-...|.. +| +|. .+..||+.
T Consensus 345 -------GGYFIsld~~~G-~AkrvV~lake---AGV~LT~AGAt-----fP---------------yg~DP~D~nIRiA 393 (425)
T PF12897_consen 345 -------GGYFISLDVLDG-TAKRVVELAKE---AGVALTPAGAT-----FP---------------YGKDPRDSNIRIA 393 (425)
T ss_dssp -------BSS-EEEEESTT--HHHHHHHHHH---TTEE---TTTT-----SG---------------GG--TTS-EEEE-
T ss_pred -------CceEEEEecCCC-hHHHHHHHHHH---hCceeCCCCCC-----CC---------------CCCCCCCCcEEec
Confidence 899999998753 35666666554 33321111211 11 122 25789999
Q ss_pred eccCCCHHHHHHH
Q 020548 296 VGYLGTLDQRWSQ 308 (324)
Q Consensus 296 ~g~~~~~~~~~~~ 308 (324)
.. +...+|+...
T Consensus 394 PS-~P~leel~~A 405 (425)
T PF12897_consen 394 PS-YPSLEELETA 405 (425)
T ss_dssp -S-SS-HHHHHHH
T ss_pred CC-CCCHHHHHHH
Confidence 99 7766665433
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-14 Score=128.31 Aligned_cols=214 Identities=13% Similarity=0.143 Sum_probs=130.0
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc--c------cceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccC-
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR--A------CNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN- 81 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~--~------~g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~- 81 (324)
.+|+.....|++........... . ....+..++.+|.+++++.++. +++.+|++++.+...|.+.+
T Consensus 171 ~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp 250 (459)
T PRK11522 171 FTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPP 250 (459)
T ss_pred cEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCC
Confidence 46888888888754332111100 0 0011334555688888888732 46889999999998999876
Q ss_pred ---hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhh
Q 020548 82 ---IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 82 ---~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~ 150 (324)
++++.++|++||+++|+||++.++.. .-.....|+++ ++|.+++ | .++ |.++.++++++.+....
T Consensus 251 ~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lgg-G~~Pi-gav~~~~~i~~~~~~~~ 326 (459)
T PRK11522 251 EGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILC--LAKALGG-GVMPI-GATIATEEVFSVLFDNP 326 (459)
T ss_pred HHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEE--echhhhC-CCccc-eeEEEcHHHHHHhccCC
Confidence 89999999999999999999966632 11223578775 8999986 5 576 77777777777654211
Q ss_pred hhhhhccCCCCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 151 QGALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
.......++++...+++. .+..+.. +...++..++.+++.+.|+++..+ +|.... +..|.|.++
T Consensus 327 ~~~~~T~~gnp~~~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~i~------------~VrG~Gl~~ 391 (459)
T PRK11522 327 FLHTTTFGGNPLACAAALATINVLLE-QNLPAQAEQKGDYLLDGFRQLARE--YPDLVQ------------EARGKGMLM 391 (459)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHh--CCCcee------------eEEeceeEE
Confidence 101112223333333222 2222221 234566677777787777765321 121000 223678999
Q ss_pred EEEeCCHHHHHHHHHHhhc
Q 020548 230 CLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 230 ~~~l~~~~~~~~~~~~l~~ 248 (324)
.+++.+.+....+.+.+..
T Consensus 392 giel~~~~~~~~i~~~l~~ 410 (459)
T PRK11522 392 AIEFVDNEIGYNFASEMFR 410 (459)
T ss_pred EEEecCchHHHHHHHHHHH
Confidence 9999755455667776664
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-14 Score=127.04 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=95.1
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccc-cC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAV-AN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~-~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~ 116 (324)
++.+++.++ .+++++|++++.++..|.. .+ +++|.++|+++|+++|+||+|.++.... .....|+
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDi 262 (421)
T PRK06777 183 LSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262 (421)
T ss_pred HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCE
Confidence 666777773 2468999999999988865 34 8899999999999999999997663211 1223676
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+ +++|.++ +|+++ |++++++++++.+..... ..+++++.+...++...+..+.. +...++..++.+++.+.|++
T Consensus 263 v--~~sK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~L~~~~~-~~l~~~~~~~g~~l~~~L~~ 336 (421)
T PRK06777 263 I--TMAKSLG-GGMPI-SAVVGRAEVMDAPAPGGL-GGTYAGNPLAVAAALAVLDVIAE-EKLCQRALILGAHLVEVLEK 336 (421)
T ss_pred E--eeehhhc-CCCce-EEEEEcHHHHhccCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 5 5999998 58997 999999998887764433 22233333333233223322221 34556667777888888876
Q ss_pred C
Q 020548 197 L 197 (324)
Q Consensus 197 ~ 197 (324)
.
T Consensus 337 l 337 (421)
T PRK06777 337 A 337 (421)
T ss_pred H
Confidence 5
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=130.08 Aligned_cols=213 Identities=13% Similarity=0.194 Sum_probs=125.5
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~ 116 (324)
++.+++.++ .+++++|++++.++++|... | +++|.++|+++|+++|+||++.++.... .....|+
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi 262 (421)
T PRK09792 183 LDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL 262 (421)
T ss_pred HHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE
Confidence 577888774 25689999999999999764 5 8899999999999999999997663211 1124564
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
.+++|.+++ |.++ |++++++++++.+..... ..++.++.+...++...+.-+.. ....++..+..+++.+.|++
T Consensus 263 --~t~gK~l~~-G~pi-gav~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~ 336 (421)
T PRK09792 263 --MTMAKSLAG-GMPL-SGVVGNANIMDAPAPGGL-GGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNTLID 336 (421)
T ss_pred --EEeehhhcC-CCce-EEEEEcHHHHhccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 569999975 8997 999999998887754322 12233333332222222221211 12233333444444444443
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH-------HHHHHHHHHhhccccccccccccCCccceeccc
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 269 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~ 269 (324)
+..+ +|... .+.|.|.++++++++. .....+...+.. .|++. .+
T Consensus 337 l~~~--~p~v~-------------~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~---~Gv~i-----------~~ 387 (421)
T PRK09792 337 AKES--VPAIA-------------AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA---QGLLL-----------LT 387 (421)
T ss_pred HHHh--CCCcc-------------eecccceEEEEEecCCccCCcchHHHHHHHHHHHH---CCcEE-----------ee
Confidence 2111 11100 1226799999999632 234555555553 33311 11
Q ss_pred cccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 270 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+..++.|||.+. ...+++.++.+.++++.
T Consensus 388 ---------------~g~~~~~irl~P~-l~i~~~ei~~~~~~l~~ 417 (421)
T PRK09792 388 ---------------CGAYGNVIRFLYP-LTIPDAQFDAAMKILQD 417 (421)
T ss_pred ---------------cCCCCCEEEEeCC-CcCCHHHHHHHHHHHHH
Confidence 0122478999988 65555555555555544
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-14 Score=121.81 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=122.0
Q ss_pred HHccCCCCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--CCceEEEEec
Q 020548 9 MQLCSSGGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFES 71 (324)
Q Consensus 9 ~~~~~~gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~ 71 (324)
+++.+ -|+|+....+|++..+.+---. |...|+ .+..++.+|++.+++++++ +++++|++++
T Consensus 130 Ra~Tg-R~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEP 208 (432)
T COG0001 130 RAYTG-RDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEP 208 (432)
T ss_pred HHhhC-CCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEecc
Confidence 34444 4899999999999887763110 111222 2344556799999999954 4899999999
Q ss_pred CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+....|.+.| ++.|+++|+++|+++|.||+..+|.... ....+|+.+ +.|.+|+ |.++ |.+.++++
T Consensus 209 v~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDltt--lGKiIGG-GlP~-ga~gGr~e 284 (432)
T COG0001 209 VAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTT--LGKIIGG-GLPI-GAFGGRAE 284 (432)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhh--hhhhhcC-Ccce-eeeccHHH
Confidence 7666788765 7899999999999999999987775432 223456665 9999977 9997 99999999
Q ss_pred HHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----HHHhCCCce
Q 020548 142 LVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR----RMKKLGLKV 201 (324)
Q Consensus 142 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~L~~~~~~~ 201 (324)
+++.+.+... +.++++++..+..+....+..+...+...++..+..++|.+ .+++++..+
T Consensus 285 iM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~ 350 (432)
T COG0001 285 IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPL 350 (432)
T ss_pred HHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9998876543 12233333333333322333222211133444444444444 444555543
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-14 Score=127.60 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=73.3
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
++.+++.+. .+++.+|++++.+..+|...+ +++|+++|++||+++|+||+|.++... ......|+
T Consensus 182 ~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi 261 (420)
T TIGR00700 182 LAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDL 261 (420)
T ss_pred HHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCE
Confidence 456666652 357899999999888998765 889999999999999999999776421 11224565
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
+ +++|.++ +|+|+ |++++++++++.+...
T Consensus 262 ~--~lsK~l~-~G~pi-g~v~~~~~i~~~~~~~ 290 (420)
T TIGR00700 262 I--TTAKSLA-DGLPL-SGVTGRAEIMDAPAPG 290 (420)
T ss_pred E--Eeecccc-CCcce-EEEEecHHHHhhcCCC
Confidence 5 4999998 58997 9999999998887543
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-13 Score=118.69 Aligned_cols=274 Identities=15% Similarity=0.074 Sum_probs=164.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcC---C
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQG---R 63 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~---~ 63 (324)
|++.+....++|||+| +++.|.... ..+. ..|.....++. .|++++++++... +
T Consensus 98 Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe-----~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~ 170 (450)
T TIGR02618 98 AENLLSQIAIKPGDYV--PGNMYFTTTRYHQE-----KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADK 170 (450)
T ss_pred HHHHHHHhCCCCcCEE--CCceeHHHHHHHHH-----hCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcc
Confidence 5566666678999977 667774443 3342 24554333311 1899999999322 4
Q ss_pred ceEEEEecCCCCc-cccc---ChHHHHHHHHhcCCEEEEcCCC-C--cCC-------C--Ccc-------CCCCcEEEeC
Q 020548 64 TKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-S--PLV-------L--SPA-------RLGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~-~--~~~-------~--~~~-------~~~~d~~~~S 120 (324)
+++|.+++++|.. |.+. +++++.++|+++|+.++.|.+. . ..+ . .+. -..+|.++.|
T Consensus 171 ~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S 250 (450)
T TIGR02618 171 IPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMS 250 (450)
T ss_pred cCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEe
Confidence 5678888888865 7884 5789999999999999999997 2 111 1 111 1158999999
Q ss_pred CccccccCCCeeEEEEE-cChhHHHHHHHhhhhh-hhccCCCCCHHHHHHHhcCccc-HH-HHHHHHHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAVC-GPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPH-LG-LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~L~~ 196 (324)
++|.++++- ||+++ .++++.++++.+..-. +....+.++......+..++.. ++ ...+....+.++|.+.|.+
T Consensus 251 ~~Kd~~~~~---GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~ 327 (450)
T TIGR02618 251 GKKDCLVNI---GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKA 327 (450)
T ss_pred eccCCCCCC---ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999987774 68886 7889999998875411 1111122222221112222222 22 2333446678999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
.|..+..|. +|..+.++.. ....+..+..+|-. ..|+-++..|..-..- -
T Consensus 328 ~Gvpv~~p~-------------------ggh~V~vda~~~lph~~~~~~p~~al~~~ly~--~~gir~~e~g~~~~~~-~ 385 (450)
T TIGR02618 328 AGVPIVEPV-------------------GGHAVFLDARRFLPHIPQDQFPAQSLAASIYV--ETGVRSMERGIVSAGR-N 385 (450)
T ss_pred CCCcccCCC-------------------CcceEEEEhHHhCCCCChhhChHHHHHHHHHH--HhCccEEeecceeccc-C
Confidence 988775554 4556666543 12245566666554 4566566666441110 1
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|.... ....+-..+|+.+-..--+..-++.+.+++..+-+
T Consensus 386 ~~~~~----------~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 386 NVTGE----------HHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYK 425 (450)
T ss_pred CCCCc----------ccCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 11100 00111378999998433455567778887777754
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-13 Score=122.84 Aligned_cols=214 Identities=16% Similarity=0.121 Sum_probs=124.8
Q ss_pred CCEEEEcCCCchhHHHHHhhhc-----Ccccce---eEEEecC--------CCHHHHHHhhhc-----CCceEEEEecCC
Q 020548 15 GGHVVAARTLYGGTHALLTHFF-----PRACNI---TTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESIS 73 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~-----~~~~g~---~~~~~~~--------~d~~~l~~~l~~-----~~~~~v~~~~~~ 73 (324)
..+|+.....|++.....-... ...++. .+..++. .|++++++.+++ +++++|++++.+
T Consensus 129 r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~ 208 (425)
T PRK09264 129 RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQ 208 (425)
T ss_pred CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEeccc
Confidence 3678888888887543221110 000111 2233333 367788888742 357899999988
Q ss_pred CCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 74 NPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 74 nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
...|... .+++|.++|++||+++|+||+++++.. .......|+++ ++|.+++.|.++ |+++.++++
T Consensus 209 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l~~~G~pi-gav~~~~~i 285 (425)
T PRK09264 209 GEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVT--LSKSISGYGLPM-ALVLIKPEL 285 (425)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEE--eccccCCCccce-EEEEEchhh
Confidence 8888754 489999999999999999999966531 12234567664 789998778997 999888775
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
..+..... ..++ ++++....+. ..+.....-....++..++.+++.+.|++...+ +|.... +
T Consensus 286 -~~~~~~~~-~~T~-~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~--~~~~~~------------~ 348 (425)
T PRK09264 286 -DVWKPGEH-NGTF-RGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAK--YPGLGA------------E 348 (425)
T ss_pred -hccCCCcc-CCCC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh--CCCcee------------c
Confidence 33322111 1122 2222222222 222111111134455566677777776654211 111000 1
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
..+.|.++++++++......+...+..
T Consensus 349 vrg~Gl~~~i~l~~~~~~~~l~~~~~~ 375 (425)
T PRK09264 349 VRGRGMMQGIDFGDGELAGKIAAEAFE 375 (425)
T ss_pred ceecccEEEEEecChHHHHHHHHHHHH
Confidence 125788999999866666677766663
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-13 Score=123.57 Aligned_cols=208 Identities=15% Similarity=0.169 Sum_probs=124.1
Q ss_pred HHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCcc
Q 020548 55 VNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISK 123 (324)
Q Consensus 55 l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK 123 (324)
+++.+..+++++|++++.+...|...+ +++|.++|++||+++|+||++.++... -.....|+++ ++|
T Consensus 211 l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK 288 (443)
T PRK06058 211 IEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLIT--TAK 288 (443)
T ss_pred HHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEE--Ecc
Confidence 334442367999999988777777753 889999999999999999999776421 1223568877 689
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
.+++ |.++ |++++++++++.+..... ..++.++.+. .+++. ..++.+ +...++..++.+++.+.|++...+.
T Consensus 289 ~l~~-G~Pi-~av~~~~~i~~~~~~~~~-~~T~~gnpl~-~aaa~--a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~ 362 (443)
T PRK06058 289 GIAG-GLPL-SAVTGRAEIMDAPHPGGL-GGTYGGNPVA-CAAAL--AAIETIEEDDLVARARQIEALMTDRLRALAAED 362 (443)
T ss_pred cccC-CCcc-EEEEEcHHHHhhccCCCC-CCCCCCCHHH-HHHHH--HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9985 7997 999999998887754332 1223333333 22222 222222 1344555666777777777642111
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-------HHHHHHHHHHhhccccccccccccCCccceecccccccc
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 274 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 274 (324)
.... +..|.|.++.+++.+ ......+.+.+.. .|++ +.+.
T Consensus 363 ~~i~---------------~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~---~Gv~-----------~~~~---- 409 (443)
T PRK06058 363 DRIG---------------DVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA---AGVI-----------VLTC---- 409 (443)
T ss_pred CcEE---------------eeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH---CCeE-----------Eecc----
Confidence 1111 123678899998842 1234455555443 3331 1111
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 275 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 275 ~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+..++++|+... ...++++++.+.+++++
T Consensus 410 -----------~~~~~~lr~~Pp-l~~t~~~i~~~~~~l~~ 438 (443)
T PRK06058 410 -----------GTYGNVIRLLPP-LVIGDELLREGLDVLEA 438 (443)
T ss_pred -----------CCCCCEEEEECC-CccCHHHHHHHHHHHHH
Confidence 111368999877 55555555555555543
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-14 Score=126.77 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=101.2
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~ 116 (324)
++.+++.+. .+++++|++++.+||+|.+.+ ++++.++|+++|+++|+||+|.++.... .....|+
T Consensus 189 ~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDi 268 (443)
T PRK08360 189 VEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDI 268 (443)
T ss_pred HHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCE
Confidence 344556663 257999999999999998864 7899999999999999999997663211 1224566
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+ +++|.++ +|+++ |++++++++++.+..... ..+..++.+...++...+..+.. +...++..++.+++.+.|++
T Consensus 269 i--tlsK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~ 342 (443)
T PRK08360 269 I--TLGKPLG-GGLPI-SATIGRAEIMDSLPPLAH-AFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLGNYTKKRLEE 342 (443)
T ss_pred E--Eeccccc-CCcee-EEEEEcHHHHhhhcCCCC-CCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH
Confidence 5 5899998 58997 999999999888864332 11222222222222222222211 12344555566666666655
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
...+...+. +..|.|.++.+++.
T Consensus 343 l~~~~~~v~---------------~vrg~Gl~~gie~~ 365 (443)
T PRK08360 343 MKKKHELIG---------------DVRGIGLMIGVDLV 365 (443)
T ss_pred HHHhCCCee---------------eeeccceEEEEEEe
Confidence 311110111 22367889999885
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=131.84 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=160.9
Q ss_pred cCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc--CCceEEEEecCCCCccccc
Q 020548 12 CSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 12 ~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~ 80 (324)
.++|| +|++++..|++....+. ..|++++.++.+ |+++|++++.. .++.+|++++|++..+...
T Consensus 583 ~~~G~~~r~~vlis~~aH~snp~sa~-----~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~ 657 (954)
T PRK05367 583 ESRGEGHRDVCLIPSSAHGTNPASAV-----MAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEE 657 (954)
T ss_pred hccCCCCCCEEEEEchhhhhhHHHHH-----HCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecC
Confidence 35665 59999999988887773 378888888764 89999998833 2578888898887644457
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcC--CCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPL--VLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~--~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
|+++|+++||++|+++++|.++ .++ ...|.++|+|++++|+||+|+.| |.- .|++..++.+...+.....+.
T Consensus 658 ~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg-~G~l~vr~~l~p~lpg~~v~~ 736 (954)
T PRK05367 658 TIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPG-VGPIGVKAHLAPFLPGHPVQI 736 (954)
T ss_pred CHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCc-eEEEeecccccccCCCCccCc
Confidence 8999999999999999999998 332 23566789999999999997533 222 478877655444443221000
Q ss_pred hhc---cCCCC-CHH-------HHHHH--hcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 154 LML---LGPTM-NPK-------VAFEL--SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 154 ~~~---~~~~~-~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
... .+... +.. .++.. ..+.+.+.+..++...+++++.+.|++. +++.+++-.+
T Consensus 737 ~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~-~~~~~~~~~~------------ 803 (954)
T PRK05367 737 AGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH-YPVLYTGANG------------ 803 (954)
T ss_pred CCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh-cCccccCCCC------------
Confidence 000 01111 100 01111 1233345555666678999999999874 3332221000
Q ss_pred cCCCcceEEEEE-eCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 221 KEYGFGGLLCLD-MET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 221 ~~~~~g~~~~~~-l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
..-...++.+. ++. ......+.++|.. +|+++. ... +.. ++.+|+++.
T Consensus 804 -~~~~e~i~~~~~~~~~~g~~~~di~krL~d---~G~~~~------------t~~------------~pv-~~~l~i~pt 854 (954)
T PRK05367 804 -RVAHECILDLRPLKESTGITVDDIAKRLID---YGFHAP------------TMS------------FPV-AGTLMVEPT 854 (954)
T ss_pred -CcccceEEEeecccccCCCCHHHHHHHHHH---CCCeEe------------ecC------------Ccc-CCEEEEEee
Confidence 00123355552 321 2245677777764 444221 000 011 478999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhh
Q 020548 298 YLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~~~ 318 (324)
..+..++++.|.+++..+.+
T Consensus 855 -E~~s~~elDr~~~al~~i~~ 874 (954)
T PRK05367 855 -ESESKAELDRFCDAMIAIRA 874 (954)
T ss_pred -ecCCHHHHHHHHHHHHHHHH
Confidence 88888999999999988764
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-13 Score=122.83 Aligned_cols=250 Identities=13% Similarity=0.173 Sum_probs=148.8
Q ss_pred CEEEEcCCCchhHHHHHhhhcCc----------ccceeEEEecCCC-----HHHHHHhhh--cCCceEEEEec-CCCCcc
Q 020548 16 GHVVAARTLYGGTHALLTHFFPR----------ACNITTTFVDISD-----HEMVNSAIV--QGRTKVLYFES-ISNPTL 77 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~----------~~g~~~~~~~~~d-----~~~l~~~l~--~~~~~~v~~~~-~~nptG 77 (324)
.+|+.....|++........... ..+......+..| ++++++.+. .+++++|++++ +++..|
T Consensus 135 ~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG 214 (423)
T PRK05964 135 SRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGG 214 (423)
T ss_pred cEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCC
Confidence 58999999998855433211110 0122222222224 788888873 25688999998 688888
Q ss_pred cccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 78 AVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 78 ~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
...+ +++|.++|++||+++|+||++.++... .....+|+++ ++|+++++..++ |+++.++++.+.+
T Consensus 215 ~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~~p~-~av~~~~~i~~~~ 291 (423)
T PRK05964 215 MLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMC--LSKGLTGGYLPL-AATLCTAEIFEAF 291 (423)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeee--eehhhhcCcccc-eEEEEcHHHHHhh
Confidence 7753 889999999999999999999666321 1223467654 789998755786 8899999998887
Q ss_pred HHhhhhhhhccCC--CCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 147 MDLHQGALMLLGP--TMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
...........++ ...+..++.+...++.+ +...++..++.+++.+.|++... .|.+. +.
T Consensus 292 ~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~---~~~i~-------------~v 355 (423)
T PRK05964 292 YSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD---LPGVA-------------DV 355 (423)
T ss_pred hcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc---CCCeE-------------Ee
Confidence 5320000001111 12222222222222222 23445566677777777776521 12110 11
Q ss_pred CCcceEEEEEeCCHH---HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 223 YGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~---~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.+.|.++.+++.+.. ....+...+.. .|++. .+ ..+.+|++.. .
T Consensus 356 rg~Gl~~~i~l~~~~~~~~~~~l~~~l~~---~Gv~v-----------~~------------------~~~~lR~~p~-l 402 (423)
T PRK05964 356 RVLGAIGAVELDRPVLERDGPALRAFALE---RGVLL-----------RP------------------LGNTIYLMPP-Y 402 (423)
T ss_pred ecccEEEEEEeccCcchhHHHHHHHHHHH---CCeEE-----------Ee------------------cCCEEEEeCC-c
Confidence 246888899987432 35566666653 33311 11 1257999999 8
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 020548 300 GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~ 317 (324)
..++++++.+.+++++.-
T Consensus 403 ~~t~edId~~v~~l~~al 420 (423)
T PRK05964 403 IITAEELDRITDAIVEVA 420 (423)
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 888888887777776653
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=126.55 Aligned_cols=176 Identities=11% Similarity=0.114 Sum_probs=107.8
Q ss_pred CHHHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEE
Q 020548 51 DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVV 117 (324)
Q Consensus 51 d~~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~ 117 (324)
+++++++.++ .+++++|++++.+...|.+.+ +++++++|++||+++|+||+|+++.... ...+....
T Consensus 191 ~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pD 270 (433)
T PRK08117 191 CLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPD 270 (433)
T ss_pred HHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCC
Confidence 4566666653 246899999999999999887 9999999999999999999997663211 11233233
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~ 195 (324)
+.+++|.+++ |.++ |++++++++++.+..... ..++.+ ++...+++. ..++.+ +...++..++.+++.+.|+
T Consensus 271 i~t~sK~lg~-G~pi-gav~~~~~i~~~~~~~~~-~~T~~~-np~~~aaa~--a~L~~l~~~~l~~~~~~~g~~l~~~L~ 344 (433)
T PRK08117 271 IMTIAKGIAS-GLPL-SAVVASKELMEQWPLGSH-GTTFGG-NPVACAAAL--ATLEVIKEEKLLDNANEMGAYALERLE 344 (433)
T ss_pred EeehhhhccC-CCcc-eeEEEcHHHHhhccCCCC-CCCCCc-CHHHHHHHH--HHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4579999985 8997 999999988887743322 112222 222222222 222222 2344555666677777776
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC------HHHHHHHHHHhh
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMNYLQ 247 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~l~ 247 (324)
+...+. |... +..+.|.++.+++.+ ......+.+.+.
T Consensus 345 ~l~~~~--~~~~-------------~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~ 387 (433)
T PRK08117 345 VLKEKH--PVIG-------------DVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL 387 (433)
T ss_pred HHHhcC--Ccee-------------eeecCCcEEEEEEecCCCCcchHHHHHHHHHHH
Confidence 643211 1100 112577888888842 223445555554
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-13 Score=129.97 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=124.9
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccC-hHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN-IPELS 86 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-~~~i~ 86 (324)
.++|+++...|+.....++ ..|++++.++.+ |+++|++++.+ +++++|++++|+| +|.+.+ +++|.
T Consensus 578 R~~vlip~saHgtnPasa~-----~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~ 651 (939)
T TIGR00461 578 RNICLIPVSAHGTNPASAA-----MAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHAC 651 (939)
T ss_pred CCEEEEEccccCcCHHHHH-----HCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHH
Confidence 3579999999977776663 368888888764 89999999932 5899999999999 798876 99999
Q ss_pred HHHHhcCCEEEEcCCC-C-c-CCCCccCCCCcEEEeCCccccccC----CCeeEEEEEcChhHHHHHHHhhhhh------
Q 020548 87 RLAHDKGVTVVVDNTF-S-P-LVLSPARLGADVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDLHQGA------ 153 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~-~-~-~~~~~~~~~~d~~~~S~sK~~~~~----g~r~~G~i~~~~~~~~~l~~~~~~~------ 153 (324)
++||++|..+++|.++ . . ....|.++|+|++++|.||+|++| |.-+ |++..++++...+-....+.
T Consensus 652 ~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~-G~i~vr~~L~~~lPg~~v~~t~d~~g 730 (939)
T TIGR00461 652 DIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGM-GPIGVKSHLIPFLPKHDVVSMITGIG 730 (939)
T ss_pred HHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCe-EEEEEhhhchhhcCCCcccccccCCC
Confidence 9999999999999998 3 2 234567889999999999977622 3334 99988866554432110000
Q ss_pred ------hhc---cCCCCCHHHHHHH--hcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 154 ------LML---LGPTMNPKVAFEL--SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 154 ------~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
... ++.......++.. +.+.+.+.+..+....+++++.+.|++ +.++.++
T Consensus 731 req~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~ 791 (939)
T TIGR00461 731 GSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-HYPILFV 791 (939)
T ss_pred CccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCccccc
Confidence 000 1111111222222 223344666666678899999999987 3444444
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=126.28 Aligned_cols=184 Identities=17% Similarity=0.230 Sum_probs=119.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------CH-----HHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------DH-----EMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d~-----~~l~~~l~~-~~~~ 65 (324)
+|+..++.++++|||+|+++..+|-+....+ .+.|+.++++++. ++ +.+++++++ +..+
T Consensus 93 ~g~~a~i~a~~~~gd~VLv~RN~HkSv~~al-----il~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k 167 (417)
T PF01276_consen 93 SGNQAMIMALCRPGDKVLVDRNCHKSVYNAL-----ILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAK 167 (417)
T ss_dssp HHHHHHHHHHTTTTCEEEEETT--HHHHHHH-----HHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcHHHHHHHH-----HHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCcccc
Confidence 3678889999999999999999999998877 3468888887652 34 889888843 3334
Q ss_pred ---EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCC-----ccCCCCc-------EEEeCCccccccCC
Q 020548 66 ---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS-----PARLGAD-------VVVHSISKFISGGA 129 (324)
Q Consensus 66 ---~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~-----~~~~~~d-------~~~~S~sK~~~~~g 129 (324)
+|++++|+. .|.+.|+++|+++|++++++++||||| +.+.+. ...+|+| +++.|.||.+++
T Consensus 168 ~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-- 244 (417)
T PF01276_consen 168 APRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPA-- 244 (417)
T ss_dssp CESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--
T ss_pred CceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhcccc--
Confidence 499999854 799999999999999999999999999 444433 2345899 999999999754
Q ss_pred CeeEEEEEcChh---HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH-----HHHHHHHHHHHHHHHHHHHh
Q 020548 130 DIIAGAVCGPAN---LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL-----GLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 130 ~r~~G~i~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~L~~ 196 (324)
..-++++-.+.+ -.+.++.... ....++|+-...+-+-.....+ ....++..++++.+++.+++
T Consensus 245 ltQts~lh~~~~~~v~~~~~~~~l~---~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 245 LTQTSMLHVKGDRIVDHERVNEALS---MHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp -TT-EEEEEETCCCTTHHHHHHHHH---HHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEecCCCcccHHHHHHHHH---HHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333477743332 2355554433 1445555533222111111112 23455667777888888843
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=121.73 Aligned_cols=201 Identities=15% Similarity=0.182 Sum_probs=130.5
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
.+++++++++.+...|.+.+ ++++.++|++||+++|+||+|.++... -.....|+++ ++|.+++ |.
T Consensus 221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G~ 297 (447)
T COG0160 221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-GL 297 (447)
T ss_pred CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-CC
Confidence 36899999999999999964 789999999999999999999777532 2222578888 9999988 99
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
++ |.++.++++++ ..+... .. ++++++...+++.+....-+-+...++..+.-+++.+.|.++..+...-.
T Consensus 298 Pl-~avv~r~ei~~-~~~g~~-~~-Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig----- 368 (447)
T COG0160 298 PL-SAVVGRAEIMD-WPPGGH-GG-TFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG----- 368 (447)
T ss_pred ce-eEEeccHHhcc-cCCccc-CC-CCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee-----
Confidence 97 99999999888 443333 12 34444444444433222111124556667777777777776533211111
Q ss_pred hhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 211 HHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
+..|.|.++.+++. +.+...++++++.. .|++ +..
T Consensus 369 ----------dVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~---~Gli----------l~~-------------- 411 (447)
T COG0160 369 ----------DVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFE---RGLL----------LLT-------------- 411 (447)
T ss_pred ----------cccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH---cCCE----------Eec--------------
Confidence 34478999999876 13556777777664 3331 111
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.|...+.+||..- ..-+++.++...++|+
T Consensus 412 --~G~~~nviRi~PP-L~is~e~~d~~l~il~ 440 (447)
T COG0160 412 --CGPHGNVLRILPP-LTISDEELDEGLDILE 440 (447)
T ss_pred --cCCCCcEEEEeCC-cccCHHHHHHHHHHHH
Confidence 2334688998887 5544444444444443
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-13 Score=122.23 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=124.9
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce-----eEEEecC-----CCHHHHHHhhhcC-----CceEEEEecCCCCcccccC
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI-----TTTFVDI-----SDHEMVNSAIVQG-----RTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~-----~~~~~~~-----~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~ 81 (324)
.|++++..|.+....+. ++|+ ..+.++. .|+++|++++++. .+-+|+.+.....+|.+.|
T Consensus 183 vv~~S~~aH~Sv~Kaa~-----~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp 257 (490)
T PLN02880 183 VVYASDQTHSALQKACQ-----IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP 257 (490)
T ss_pred EEEEcCCchHHHHHHHH-----HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc
Confidence 56678888999888873 3555 2334432 2899999988421 2456677778999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcC-CCCc------cC-CCCcEEEeCCccccccCCCeeEEEEEc-Chh-HHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPL-VLSP------AR-LGADVVVHSISKFISGGADIIAGAVCG-PAN-LVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~-~~~~------~~-~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~-~~~~l~~~~~ 151 (324)
+++|+++|+++|++++||.+|++. ...+ .. .++|.++.++|||++.|-.+ |+++. ++. +.+.+.....
T Consensus 258 l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~--g~llvr~~~~l~~~~~~~~~ 335 (490)
T PLN02880 258 LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDC--SLLWVKDRNALIQSLSTNPE 335 (490)
T ss_pred HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccE--EEEEEeCHHHHHHHHccCHH
Confidence 999999999999999999999554 3221 12 26899999999999776544 66644 333 2232221111
Q ss_pred hhhhc-----------------cCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCch
Q 020548 152 GALML-----------------LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPH 211 (324)
Q Consensus 152 ~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~ 211 (324)
+... .+-....+..+..++ +.+.+.+++++..+.++++.+.+++.+ +++..|.
T Consensus 336 -Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~------ 408 (490)
T PLN02880 336 -FLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR------ 408 (490)
T ss_pred -HhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC------
Confidence 0000 111122344443332 345577788888899999999998875 4655443
Q ss_pred hHHHHHHhccCCCcceEEEEEeC
Q 020548 212 HELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
..+++.|+++
T Consensus 409 -------------~~~iv~Fr~~ 418 (490)
T PLN02880 409 -------------IFSLVCFRLV 418 (490)
T ss_pred -------------ceEEEEEEEe
Confidence 2458888876
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-13 Score=111.72 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=127.9
Q ss_pred HHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCC
Q 020548 31 LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV 106 (324)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~ 106 (324)
.++.+.|-.-| .+..++..|.++|+.++++++++++++++.+...|.+.| ++.+.++|.+|++++|.||+|.++.
T Consensus 176 s~~~fgp~~P~-~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~ 254 (427)
T KOG1402|consen 176 SWDGFGPFLPG-VVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLA 254 (427)
T ss_pred hhhccCCCCCC-cceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhccc
Confidence 34455554223 256677789999999998889999999999999999964 8899999999999999999997764
Q ss_pred C-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHH
Q 020548 107 L-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179 (324)
Q Consensus 107 ~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (324)
. +-.+...|+++ +.|.++|.-.++ ..+.++++++-.+++..++ .++.|+.+....+.+++. .-.-+..
T Consensus 255 RTGk~la~d~env~PDivi--lgKalSGG~~Pv-savl~~~~im~~~~pgeHg-sTyggNpLg~~vaiAale-vi~eekL 329 (427)
T KOG1402|consen 255 RTGKLLACDYENVRPDIVI--LGKALSGGVYPV-SAVLADDDIMLNIKPGEHG-STYGGNPLGCAVAIAALE-VIVEEKL 329 (427)
T ss_pred ccCcEEEeehhhcCCCeEE--EeccccCCeeee-EEEEecHHHHhccCCCccc-cccCCChHHHHHHHHHHH-HHHHHHH
Confidence 3 22334689999 899999977787 7778888888888777652 234444433333322222 1112244
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 180 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 180 ~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+|-...-..++.+|.+++.++ |...+ ...|+|.+..+.+.
T Consensus 330 ~era~~lG~~l~~~L~~l~~~~--p~~v~------------~VRGrGl~~ai~i~ 370 (427)
T KOG1402|consen 330 VERAAKLGEILRDQLNKLQKKF--PHVVK------------EVRGRGLLNAIVIN 370 (427)
T ss_pred HHHHHHHHHHHHHHHHhccccc--cchhh------------eeeccceEEEEEec
Confidence 5555666677777887775432 22111 33478888888887
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=125.35 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=96.8
Q ss_pred hHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhh--------c-Ccccce------eEEEecCCCHHHHHHhhhc--CC
Q 020548 3 AISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF--------F-PRACNI------TTTFVDISDHEMVNSAIVQ--GR 63 (324)
Q Consensus 3 ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~--------~-~~~~g~------~~~~~~~~d~~~l~~~l~~--~~ 63 (324)
|+..+++... ..+++|+..++.|++....+... . +...+. ....++..|++++++.+.. ++
T Consensus 118 A~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 197 (426)
T PRK00062 118 ATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDE 197 (426)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCc
Confidence 4555555432 23579999999999975322111 0 000011 1223344588999888832 47
Q ss_pred ceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeE
Q 020548 64 TKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+++|++++....+|.+.+ +++|.++|++||+++|+||+|.++.... .....|+ .+++|.+++ |+++
T Consensus 198 ~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~~-G~p~- 273 (426)
T PRK00062 198 IAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIGG-GLPV- 273 (426)
T ss_pred EEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhhC-CCcc-
Confidence 889999988777999987 8999999999999999999996653211 1123454 568999975 7886
Q ss_pred EEEEcChhHHHHHH
Q 020548 134 GAVCGPANLVNSMM 147 (324)
Q Consensus 134 G~i~~~~~~~~~l~ 147 (324)
|+++.++++++.+.
T Consensus 274 ga~~~~~~i~~~~~ 287 (426)
T PRK00062 274 GAFGGRREIMEQLA 287 (426)
T ss_pred eeeeEHHHHHHhhc
Confidence 88899988888885
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-12 Score=119.14 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=121.7
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhc---CCceEEEEe--cCCCCcccccC
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQ---GRTKVLYFE--SISNPTLAVAN 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~---~~~~~v~~~--~~~nptG~~~~ 81 (324)
+..|+++.-.|.+....+. +.|+ +++.++.+ |+++|++++++ .+++.+.+. ..++.||.+.|
T Consensus 209 ~~~v~~S~~~H~S~~kaa~-----~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp 283 (522)
T TIGR03799 209 GLAILVSERGHYSLGKAAD-----VLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP 283 (522)
T ss_pred ceEEEECCCchHHHHHHHH-----HcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC
Confidence 4679999999999887763 2444 45555543 89999998831 455555444 56779999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC-CCc------cCC-CCcEEEeCCccccccCCCeeEEEE-EcChhHHHHHHHhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV-LSP------ARL-GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQG 152 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~-~~~------~~~-~~d~~~~S~sK~~~~~g~r~~G~i-~~~~~~~~~l~~~~~~ 152 (324)
+++|+++|+++|++++||.+|++.. ..+ ... ++|.++.|.|||+++|-+. |++ +.++++.+.+.....+
T Consensus 284 l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~--G~llvr~~~~~~~~~~~~~Y 361 (522)
T TIGR03799 284 LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGA--GMVLFKDPALMSAIEHHAEY 361 (522)
T ss_pred HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCccc--EEEEEeCHHHHHHhccCcch
Confidence 9999999999999999999995432 222 122 6899999999988776544 655 5556665554431110
Q ss_pred ----------hhhccCCCCC-HHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCC
Q 020548 153 ----------ALMLLGPTMN-PKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP 204 (324)
Q Consensus 153 ----------~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p 204 (324)
..+..++... ....+..++. ...++..+++..++++++.+.|++.+. ++..|
T Consensus 362 l~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~ 427 (522)
T TIGR03799 362 ILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE 427 (522)
T ss_pred hcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC
Confidence 0012222222 2223333332 234667788889999999999998854 55544
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=125.25 Aligned_cols=256 Identities=17% Similarity=0.191 Sum_probs=153.6
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhh--cCCceEEEEecCCCCcccccChHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~--~~~~~~v~~~~~~nptG~~~~~~~i~~l 88 (324)
++|+++...|+.....+. ..|++++.++.+ |+++|++++. ++++++|.+++|++-.+...++++|.++
T Consensus 592 ~~vLIp~saHgtNpasa~-----~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~i 666 (954)
T PRK12566 592 DICLIPSSAHGTNPASAQ-----MAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEV 666 (954)
T ss_pred CEEEecccccccCHHHHH-----HCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHH
Confidence 578899988877665552 268898888774 8999999983 2678889999998877666779999999
Q ss_pred HHhcCCEEEEcCCC--CcCC-CCccCCCCcEEEeCCccccccCCCe---eEEEEEcChhHHHHHHHhh----hh-----h
Q 020548 89 AHDKGVTVVVDNTF--SPLV-LSPARLGADVVVHSISKFISGGADI---IAGAVCGPANLVNSMMDLH----QG-----A 153 (324)
Q Consensus 89 ~~~~~~~~ivD~~~--~~~~-~~~~~~~~d~~~~S~sK~~~~~g~r---~~G~i~~~~~~~~~l~~~~----~~-----~ 153 (324)
||++|+++++|.++ +... ..|.++|+|++++++||+|++|-.- -.|.+...+.+...+..+. .+ .
T Consensus 667 ah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~g 746 (954)
T PRK12566 667 VHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNG 746 (954)
T ss_pred HHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCC
Confidence 99999999999998 2333 3467889999999999999754222 0244444444444443221 00 0
Q ss_pred hhccCCCCC---HHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEE
Q 020548 154 LMLLGPTMN---PKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 229 (324)
Q Consensus 154 ~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 229 (324)
++...+..+ ...++..+..+.. +.+..+....+++++.+.|.+ ++.+.+... .+. . -.-+.+
T Consensus 747 a~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~--~~~--~---------~hEfii 812 (954)
T PRK12566 747 AVSAAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGG-AFPVLYRGR--NER--V---------AHECIL 812 (954)
T ss_pred ceeecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCC--CCC--e---------eeEEEE
Confidence 011111122 1122222222221 222222236788899999977 333222110 000 0 001112
Q ss_pred EE-EeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 230 CL-DMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 230 ~~-~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
.+ .++. ......+.++|.. +|+++.. +.. . .++.+|++.. ..+..+++
T Consensus 813 ~~~~l~~~~g~~~~dvakRL~d---~Gihapt-------~~f-----------------P-v~~~LmIepT-E~eskeEI 863 (954)
T PRK12566 813 DLRPLKAQTGISEEDVAKRLMD---YGFHAPT-------MSF-----------------P-VPGTLMVEPT-ESESKAEL 863 (954)
T ss_pred EccccccccCCCHHHHHHHHHH---CCcEEeE-------Eee-----------------c-cCCEEEEEee-eeCCHHHH
Confidence 22 2321 1234557777663 4442210 001 1 1478999999 88999999
Q ss_pred HHHHHHHHhhhhc
Q 020548 307 SQFEKALSRMQDS 319 (324)
Q Consensus 307 ~~l~~~l~~~~~~ 319 (324)
+.|.++|..+.++
T Consensus 864 Drf~eAL~~I~~e 876 (954)
T PRK12566 864 DRFVEAMLSIRAE 876 (954)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-12 Score=108.76 Aligned_cols=249 Identities=17% Similarity=0.149 Sum_probs=156.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH-----HHHhhhcCcccceeEEEecC----CCHHHHHHhhhc-----CCceEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH-----ALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQ-----GRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~-----~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~-----~~~~~v 67 (324)
+|...++.+.++||+.|++..-.|-... ..+. .+.++..++. .+++++++.+.. ..+.++
T Consensus 61 ~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~------~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~ 134 (342)
T COG2008 61 QANQLALAAHCQPGESVICHETAHIYTDECGAPEFFG------GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLA 134 (342)
T ss_pred HHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHc------CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceE
Confidence 3667788889999999999997774332 2221 2344444432 289999997732 235666
Q ss_pred EEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCC-C-c-CCCCc----cCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 68 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF-S-P-LVLSP----ARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 68 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~-~-~-~~~~~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++++.+|..|++++ +++|.++||++|+.+.+|.+. . . ....+ ...++|.+..++||..+.|+ +.+++
T Consensus 135 ~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~ 211 (342)
T COG2008 135 VLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVF 211 (342)
T ss_pred EEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEE
Confidence 66666668899987 557778899999999999984 1 1 11222 22389999999999987775 56668
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHH--HHHHhcCccc-HHHHHHHH-HHHHHHHHHHHHhC-CCceeCCCCCCCchh
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKV--AFELSERIPH-LGLRMKEH-CHRALIFARRMKKL-GLKVLYPGLEDHPHH 212 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~ 212 (324)
+++++.+.++.++. ..|..+++.. ++..+..+.. +..+.+++ .+.+++|.+.|+.. |.++..|.
T Consensus 212 gn~~~~~~a~~~rK----~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~------- 280 (342)
T COG2008 212 GNRDFAKRARRWRK----RAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPV------- 280 (342)
T ss_pred cCHHHHHHHHHHHH----HhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCC-------
Confidence 99999999998877 4455444332 1222212222 22222333 33489999999965 66776654
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH-HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC-C
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA-G 290 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 290 (324)
..+++-+.++.. ....++...+.. .|.. .... .
T Consensus 281 ------------~tN~vf~~l~~~~i~~l~~~~~~~~----------~~~~-----------------------~~~~~~ 315 (342)
T COG2008 281 ------------ETNMVFVRLPESAIEALRLAGALFY----------RGVL-----------------------IGAHGE 315 (342)
T ss_pred ------------cccEEEEECChHHHHHHHhhchhhe----------eeee-----------------------ccCCCc
Confidence 356888888732 112222111111 1100 0001 3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+||--+ ....++.++.+...++.+
T Consensus 316 ~vRfvts-~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 316 IVRFVTS-WATSEEDVDELVAAIKAL 340 (342)
T ss_pred eEEEEee-ccCCHHHHHHHHHHHHHh
Confidence 6999988 778888788777777654
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=118.72 Aligned_cols=162 Identities=12% Similarity=0.116 Sum_probs=100.1
Q ss_pred HHHHHHhhh----cCCceEEEEecCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEE
Q 020548 52 HEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~----~~~~~~v~~~~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~ 118 (324)
++++++.+. .+++++|++++.+..+|... | +++|.++|++||+++|+||+|.++.... ...+....+
T Consensus 183 ~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi 262 (425)
T PRK07495 183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADL 262 (425)
T ss_pred HHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCE
Confidence 455676663 25689999998766688553 2 7899999999999999999997664221 112333445
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHh
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~ 196 (324)
.+++|.+++ |.++ |++++++++++.+..... .. ..++++...+++ +..++.+. ...++..+..+++.+.|++
T Consensus 263 ~tlsK~l~~-G~pi-gav~~~~~i~~~~~~~~~-~~-T~~~~pl~~aaa--~a~l~~l~~~~l~~~~~~~g~~l~~~L~~ 336 (425)
T PRK07495 263 TTMAKGLAG-GFPL-AAVTGRAEIMDAPGPGGL-GG-TYGGNPLGIAAA--HAVLDVIEEEDLCERANQLGNRLKQRLAS 336 (425)
T ss_pred EeehhhhcC-Cccc-eEEEEcHHHHhccCCCCc-CC-CCCCCHHHHHHH--HHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 669999975 7997 999999998887754322 11 222332222222 22222222 3344556666667776665
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.-.+. |... +..|.|.++++++.
T Consensus 337 l~~~~--~~i~-------------~vrG~Gl~~~iel~ 359 (425)
T PRK07495 337 LRETV--PEIA-------------DIRGPGFMNAVEFN 359 (425)
T ss_pred HHhhC--CCee-------------eeecCceEEEEEEe
Confidence 42211 2100 22367899999985
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=110.41 Aligned_cols=274 Identities=14% Similarity=0.033 Sum_probs=161.0
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHH-HHHhhhcCcccceeEEEec-----------C----CCHHHHHHhhhc---CC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVD-----------I----SDHEMVNSAIVQ---GR 63 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~-~~~~~~~~~~~g~~~~~~~-----------~----~d~~~l~~~l~~---~~ 63 (324)
|+..++...++|||+| +..+|.... ..+. . .|....-++ . .|++++++++.+ .+
T Consensus 105 Al~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~----~-~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~ 177 (460)
T PRK13237 105 AENLLSRIAIKPGQYV--PGNMYFTTTRYHQE----L-NGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAEN 177 (460)
T ss_pred HHHHHHHhCCCCcCEE--CCccchHhhHHHHH----h-CCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCc
Confidence 4555555568999965 555444333 3242 1 444322221 1 289999999832 24
Q ss_pred ceEEEEecCCCCc-cccc---ChHHHHHHHHhcCCEEEEcCCC-Cc---CC------C--Ccc-------CCCCcEEEeC
Q 020548 64 TKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-SP---LV------L--SPA-------RLGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~-~~---~~------~--~~~-------~~~~d~~~~S 120 (324)
+++|.++.++|.. |+.. +++++.++|+++|+.+|.|.+. .+ |. + .+. -...|.+++|
T Consensus 178 ~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S 257 (460)
T PRK13237 178 IAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMS 257 (460)
T ss_pred cCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEe
Confidence 5567777788887 6765 6799999999999999999997 33 11 1 111 1147999999
Q ss_pred CccccccCCCeeEEEE-EcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCc-ccHH-HHHHHHHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAV-CGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERI-PHLG-LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~L~~ 196 (324)
++|.++.+. ||++ +.++++.++++....- -+...-+.++......+..++ +.++ .+.+....+.++|.+.|.+
T Consensus 258 ~~K~~~~~~---GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~ 334 (460)
T PRK13237 258 GKKDCLVNI---GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLA 334 (460)
T ss_pred CCCCCCCCC---ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 999987764 5777 5577899998877421 011111223222222222222 2222 5666667889999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
.|..+..|. +|--+.++.. ....+..+..+|-. ..|+-++..|..-..- -
T Consensus 335 ~Gvpv~~p~-------------------ggH~v~vda~~~lph~~~~~~p~~al~~~ly~--~~GiR~~e~g~~~~~~-~ 392 (460)
T PRK13237 335 AGVPIVEPV-------------------GGHAVFLDARRFLPHLPQDQFPAQALAAELYI--ESGVRSMERGIVSAGR-D 392 (460)
T ss_pred CCCceecCC-------------------CceEEEEEhHHhCCCCCcccChHHHHHHHHHH--HhCcCeEeecceeccc-C
Confidence 999887775 3333444321 12245566666554 4555555555441110 1
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|.... ....+-..+|+.+-..--+.+-++.+.+++..+-+
T Consensus 393 ~~~~~----------~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 393 PKTGE----------NHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred CCCCc----------cCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 11100 00111378999998433455567788888877754
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-12 Score=115.79 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=120.2
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce---eEEEecC-------CCHHHHHHhhhcC-----CceEEEEecCCCCcccccC
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDI-------SDHEMVNSAIVQG-----RTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~-------~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~ 81 (324)
.|++++..|.+....+. ++|+ .++.++. .|+++|++++.+. .+-+|+.+.....+|.+.|
T Consensus 231 vvy~S~~aH~Sv~KAa~-----ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 231 VVYGSDQTHSSFRKACL-----IGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred EEEecCCchHHHHHHHH-----HcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 56677888999888773 3444 2444433 2899999998321 2456777778999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC-CCcc------CC-CCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHH---h
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV-LSPA------RL-GADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMD---L 149 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~------~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~---~ 149 (324)
+++|+++|++||+++.||.+|+++. ..+. .+ .+|-+..++|||+..|-.+ +.+++.++. +.+.+.. +
T Consensus 306 l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~c-g~llvr~~~~l~~a~~~~~~Y 384 (539)
T PLN02590 306 LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC-SPLWVKDRYSLIDALKTNPEY 384 (539)
T ss_pred HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCE-EEEEecCHHHHHHHhhcCHHH
Confidence 9999999999999999999996643 2221 11 4799999999999886555 244455543 3333221 1
Q ss_pred hhh-------------hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCC
Q 020548 150 HQG-------------ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP 204 (324)
Q Consensus 150 ~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p 204 (324)
... ++...+-....+..|..++ +.+.+.+++++..+.++++.+.+++.+. ++..|
T Consensus 385 L~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~ 455 (539)
T PLN02590 385 LEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT 455 (539)
T ss_pred hCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 100 0001111123444454443 3355778899999999999999998864 65544
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=118.49 Aligned_cols=150 Identities=15% Similarity=0.241 Sum_probs=96.4
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|+++++++..|...+ +++|.++|++||+++|+||++.++... -.....|++ +++|.+++ |.
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~-G~ 282 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAG-GM 282 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccC-Cc
Confidence 57899999999998898865 899999999999999999999666321 112346766 49999976 68
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |++++++++++.+..... .. ..++. +..++..+..++.+ +...++..++.+++.+.|++...+.....
T Consensus 283 p~-gav~~~~~i~~~~~~~~~-~~-T~~~~--pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~--- 354 (445)
T PRK08593 283 PM-SAIVGRKEIMESLEAPAH-LF-TTGAN--PVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVG--- 354 (445)
T ss_pred cc-EEEEEcHHHHhhhccCCC-CC-CCCCC--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEE---
Confidence 86 999999999888753222 11 22222 23333222223222 23445556666777777765421111111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|.++.+++.
T Consensus 355 ------------~vrG~Gl~~gi~l~ 368 (445)
T PRK08593 355 ------------DVRGYGLSIGIDIV 368 (445)
T ss_pred ------------EEeccceEEEEEEe
Confidence 22367888888874
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-12 Score=106.17 Aligned_cols=250 Identities=16% Similarity=0.199 Sum_probs=160.2
Q ss_pred HHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-------CceEEEEec
Q 020548 5 SSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-------RTKVLYFES 71 (324)
Q Consensus 5 ~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-------~~~~v~~~~ 71 (324)
..+++.-| ++|.+|++.+..|--..+.- -.....|+.+..+... +++++++++..+ .|++|++++
T Consensus 85 llaIm~Hc~~rg~eii~gd~~HI~~~E~g--g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclEN 162 (384)
T KOG1368|consen 85 LLAIMVHCHQRGSEIIVGDRAHIHRYEQG--GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLEN 162 (384)
T ss_pred HHHHHHHhcCCCceEEeccchheeehhcc--ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeec
Confidence 34555556 48999999987663222111 1112245555554432 899999998522 489999999
Q ss_pred CCCCcc-cccChH---HHHHHHHhcCCEEEEcCCC---CcC--CCCccCC--CCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTL-AVANIP---ELSRLAHDKGVTVVVDNTF---SPL--VLSPARL--GADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG-~~~~~~---~i~~l~~~~~~~~ivD~~~---~~~--~~~~~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
-+|.+| .+.|++ ++.+||+++|+.+.+|.+. +.. ..+..+. ..|-+.--+||.+|.|- |.++++++
T Consensus 163 T~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPV---GSViVG~k 239 (384)
T KOG1368|consen 163 THNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPV---GSVIVGSK 239 (384)
T ss_pred cccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCc---ccEEEccH
Confidence 888777 887755 6677899999999999984 111 1111111 35666666999998874 56779999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHH--HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPK--VAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.+..+. ..|+.+.|. .+++++-.++.-...++.-.+++..+.+.+++.+ +++..|..
T Consensus 240 ~FI~kA~~~RK----alGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~----------- 304 (384)
T KOG1368|consen 240 DFIDKARHFRK----ALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAV----------- 304 (384)
T ss_pred HHHHHHHHHHH----HhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchh-----------
Confidence 99999887776 334443332 2333333333322255556788889999999876 46666642
Q ss_pred HhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
..+++.+.+. +...++.+++.+.. .|++. . +.....+|+++
T Consensus 305 -------etNiv~~~l~q~~~~~~~l~~~~~k---~gi~l-----------m-----------------~~~s~r~Rivl 346 (384)
T KOG1368|consen 305 -------ETNIVNMVLCQARLTAEELCKFLEK---NGILL-----------M-----------------GGASRRIRIVL 346 (384)
T ss_pred -------hcceeeeecccccCCHHHHHHHHHH---CCeEE-----------e-----------------eccccceEEEE
Confidence 3457777765 55567778888775 33311 1 22234599999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 020548 297 GYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l 313 (324)
+ ..-+++.++.+..++
T Consensus 347 h-~Qvt~~~ve~~~~~~ 362 (384)
T KOG1368|consen 347 H-HQVTDEDVEYVKSVL 362 (384)
T ss_pred E-EecCHHHHHHHHHHH
Confidence 9 766666777777777
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=111.38 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=127.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCC--ceEEEEecCCCCcccccChHHHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~--~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
+...++++...|.+....+ +++|++++.++.+ |+++|++++.++. +-+|+.+..+.++|.+.|+++|.
T Consensus 177 ~~~vvy~S~~aH~Sv~KAa-----~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa 251 (470)
T PLN02263 177 PDGILYASRESHYSVFKAA-----RMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVI 251 (470)
T ss_pred CCcEEEEcCCccHHHHHHH-----HhcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHH
Confidence 3447889999999999888 4578888777764 8999999884332 55677788999999999999999
Q ss_pred HHHHhcCC-----EEEEcCCCCcCCC----C--ccC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-
Q 020548 87 RLAHDKGV-----TVVVDNTFSPLVL----S--PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG- 152 (324)
Q Consensus 87 ~l~~~~~~-----~~ivD~~~~~~~~----~--~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~- 152 (324)
++|+++|+ ++.||.+|+++.. . ..+ ..+|-+..+.||+++.|-.+ |++..+.+..+.+.....+
T Consensus 252 ~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~c--gvll~R~~~~~~~~~~~~Yl 329 (470)
T PLN02263 252 KTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPC--GVQITRMEHINVLSSNVEYL 329 (470)
T ss_pred HHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCE--EEEEEehhhHhhhccChHhh
Confidence 99999997 9999999966532 1 111 14889999999999876544 6665555444333221110
Q ss_pred ---hhhccCCCC--CHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCc
Q 020548 153 ---ALMLLGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLK 200 (324)
Q Consensus 153 ---~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 200 (324)
-.+..++-. ..+.+|..++ +.+.+.+++++..++++++.+.|++.++.
T Consensus 330 ~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~ 384 (470)
T PLN02263 330 ASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGIS 384 (470)
T ss_pred CCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 001222222 2345555444 34557788889999999999999999874
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=118.73 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCC--CcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~--~d~~~~S~sK~~~~~g~ 130 (324)
+++.+|++++.+...|.+.+ +++|+++|+++|+++|+||+|.++.... ..++ .| +.|++|.++ +|+
T Consensus 218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pD--i~t~sK~l~-~G~ 294 (451)
T PRK06918 218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPD--LITVSKSLG-AGV 294 (451)
T ss_pred CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCC--EEeeehhhc-CCC
Confidence 57899999988777787643 7899999999999999999997764221 1123 56 447999998 589
Q ss_pred eeEEEEEcChhHHHHHHHh
Q 020548 131 IIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~ 149 (324)
|+ ||+++++++++.+...
T Consensus 295 pi-g~v~~~~~i~~~~~~~ 312 (451)
T PRK06918 295 PI-SGVIGRKEIMDESAPG 312 (451)
T ss_pred cc-EEEEEcHHHHhccCCC
Confidence 97 9999999988877543
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-12 Score=115.85 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=105.6
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+.+++.+. .+++++|++++.+++.|.+.+ +++|.++|+++|+++|+||++.++.. .-.....|+++
T Consensus 208 ~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt 287 (460)
T PRK06541 208 DRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT 287 (460)
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE
Confidence 56777773 246889999999999999987 99999999999999999999966631 11223478776
Q ss_pred eCCccccccCCC-eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 119 ~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~ 195 (324)
++|.+++ |+ ++ |.++.++++++.+................+..++.++..++.+ +...++..++.+++.+.|+
T Consensus 288 --~gK~l~~-G~~pi-gav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~ 363 (460)
T PRK06541 288 --CAKGITS-GYSPL-GAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLE 363 (460)
T ss_pred --ecccccC-Cccce-eEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999985 65 87 8888888888877543210000111122233333333333332 2345667788888888888
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+... +|... ...|.|.++.+++.
T Consensus 364 ~l~~---~~~v~-------------~vrg~Gl~~~ie~~ 386 (460)
T PRK06541 364 KLLD---LPIVG-------------DVRGDGYFYGIELV 386 (460)
T ss_pred Hhhc---CCCeE-------------EEEecceEEEEEEe
Confidence 7531 11100 12257889999984
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-12 Score=104.23 Aligned_cols=250 Identities=16% Similarity=0.145 Sum_probs=150.9
Q ss_pred CCCCEEEEcCC-CchhHHHHHhhhcCcccce--eEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 13 SSGGHVVAART-LYGGTHALLTHFFPRACNI--TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 13 ~~gd~vl~~~p-~y~~~~~~~~~~~~~~~g~--~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
++|++||+++- .|+.-..+.+..... .++ ++.- ...++++++++ ++.+.+|++++++.-||+..++.+|-.++
T Consensus 117 ~~~r~vIv~E~~~fpTdly~a~g~~~~-~~~~~~~~~--~~~P~~~~~~~-~dd~AvV~L~~V~y~TGql~dm~aiT~~A 192 (407)
T COG3844 117 QEGRRVIVSEGDNFPTDLYIAEGLADL-LGIGYDLEG--VIAPRALEEAI-TDDVAVVLLSHVNYKTGQLLDMRAITALA 192 (407)
T ss_pred CCCceEEeecCCCCCcchhhhcchhhh-hccccccee--eeChHHHHHhh-ccceEEEEeccccccccceeeHHHHHHHH
Confidence 45888888873 343333333222221 332 2222 23678999999 89999999999999999999999999999
Q ss_pred HhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh---------------
Q 020548 90 HDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--------------- 152 (324)
Q Consensus 90 ~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~--------------- 152 (324)
|++|++++.|=++ .+ +..+.-..|+|+-+++.+|++.+..+..+|..+.++ ..+...+...+
T Consensus 193 H~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~ 271 (407)
T COG3844 193 HQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYA 271 (407)
T ss_pred HhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccc-cccccccccccccCCCCcchhhhccC
Confidence 9999999999998 33 334444559999999999998775444434444443 33222111110
Q ss_pred ----hhhccCCCCCHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHhCC----CceeCCCCCCCchhHHHHHHh
Q 020548 153 ----ALMLLGPTMNPKVAFELSERI-----PHLGLRMKEHCHRALIFARRMKKLG----LKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~p~~~~~~~~~~~~~~~ 219 (324)
...+-.+++.......+...+ -.+.+.+++.....+++++-++.+. ..+..|.-.
T Consensus 272 p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~------------ 339 (407)
T COG3844 272 PGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH------------ 339 (407)
T ss_pred cCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh------------
Confidence 111111222222222111111 1255566666788888888888763 245445411
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
..+|+-+++..+. ..+++.+|.. .|+++ . -..++.+||.+. .
T Consensus 340 ---~~rGsqvS~~hp~---~~~V~qaLi~---rGVig----D------------------------~R~P~vlRfgft-P 381 (407)
T COG3844 340 ---EERGSQVSLYHPH---GYQVMQALID---RGVIG----D------------------------FREPDVLRFGFT-P 381 (407)
T ss_pred ---hhccceeeEecCc---HHHHHHHHHH---cCccc----c------------------------ccCCCeeeecCc-c
Confidence 1268889999974 4455555553 33322 0 113578998875 3
Q ss_pred -----CCHHHHHHHHHHHHHhhh
Q 020548 300 -----GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 -----~~~~~~~~~l~~~l~~~~ 317 (324)
.+.=..++.|+++|+...
T Consensus 382 lY~~~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 382 LYVSFVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred ceechhHHHHHHHHHHHHHHhhc
Confidence 345556677777776553
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-12 Score=113.60 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=94.4
Q ss_pred CCceEEEEecCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|+++++++..|... | +++++++|++||+++|.||+|.+|... -.....|+++ ++|.+++ |+
T Consensus 205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G~ 281 (442)
T TIGR00709 205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-GL 281 (442)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-Cc
Confidence 4689999999877777764 3 789999999999999999999777421 1223578888 8999988 79
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |+++.+++ ++.+..... .. ..++++...+++. ..++.++ ...++..++.+++.+.|+++..+...+.
T Consensus 282 Pi-gav~~~~~-~~~~~~~~~-~~-T~~gnpla~aaa~--a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~--- 352 (442)
T TIGR00709 282 PL-AVLLIAPE-FDAWQPAGH-TG-TFRGNQLAMVTGT--EALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIG--- 352 (442)
T ss_pred cc-EEEEEchH-HhccCCCcC-CC-CCCcCHHHHHHHH--HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCee---
Confidence 97 88888777 444322111 11 2223333332222 2222221 3445566777777777776421111111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|.++.+++.
T Consensus 353 ------------~vrG~Gl~~~ie~~ 366 (442)
T TIGR00709 353 ------------NVRGRGLMQGIMIV 366 (442)
T ss_pred ------------eeeccceEEEEEEc
Confidence 23378999999985
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=115.94 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=132.7
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceE--EEEecCCCCcccccChHHHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKV--LYFESISNPTLAVANIPELSRL 88 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~--v~~~~~~nptG~~~~~~~i~~l 88 (324)
+|+++...|.+....+. .+|++.+.++.. |++++++++ ++++.. |+.+..+.++|.+.|+++|.++
T Consensus 159 ~ii~s~~aH~s~~Kaa~-----~lG~~~~~v~~~~~~~~id~~~l~~~i-~~~t~~g~vV~~aGtT~~G~iDdi~~ia~i 232 (460)
T COG0076 159 NIVCSETAHFSFEKAAR-----YLGLGLRRVPTVPTDYRIDVDALEEAI-DENTIGGVVVGTAGTTDTGSIDDIEELADI 232 (460)
T ss_pred eEEecCcchhHHHHHHH-----HhCCCceeEEeccCccccCHHHHHHHH-HhhccCceEEEEecCCCCCccCCHHHHHHH
Confidence 69999999999988883 356655554432 899999999 666655 7778899999999999999999
Q ss_pred HHhcCCEEEEcCCCCcCCC---Ccc-----CC-CCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHHhhhhh-----
Q 020548 89 AHDKGVTVVVDNTFSPLVL---SPA-----RL-GADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGA----- 153 (324)
Q Consensus 89 ~~~~~~~~ivD~~~~~~~~---~~~-----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~~~~~~----- 153 (324)
|++++++++||++++++.. ++. .. ++|-+..|+||++..|-.+ |.+++.+++ +.+.+.-...+.
T Consensus 233 a~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~-G~il~rd~e~l~~~~~~~~~yl~~~~~ 311 (460)
T COG0076 233 AEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGC-GVVLFRDEEALRRILIFADYYLPGGGI 311 (460)
T ss_pred HHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCc-eEEEEECHHHhhhhhhcccccCCCCCc
Confidence 9999999999999977642 111 11 6899999999998765544 344466663 444443222210
Q ss_pred --hhccCCCCC--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 154 --LMLLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 154 --~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.+..++-+. ....+..+. +.+.+....++..++++++.+.|++.+ +++..+. ..
T Consensus 312 ~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-------------------~l 372 (460)
T COG0076 312 PNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-------------------EL 372 (460)
T ss_pred CceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-------------------cc
Confidence 011111122 122233332 345577788888999999999999997 5554322 35
Q ss_pred eEEEEEeCC
Q 020548 227 GLLCLDMET 235 (324)
Q Consensus 227 ~~~~~~l~~ 235 (324)
++++|++++
T Consensus 373 ~~V~fr~~~ 381 (460)
T COG0076 373 PIVAFRLKD 381 (460)
T ss_pred ceEEEEcCC
Confidence 589999864
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=121.03 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=124.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------C-----HHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------D-----HEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d-----~~~l~~~l~~-~~~~ 65 (324)
+|+.+++++.+++||+|++..++|-+....+ .+.|..++++.+. + ++.++++++. +.++
T Consensus 232 ~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al-----~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k 306 (755)
T PRK15029 232 GSNRTIMQACMTDNDVVVVDRNCHKSIEQGL-----ILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTK 306 (755)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHH-----HHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhh
Confidence 3677888999999999999999999998877 3478888887642 3 8888888832 2334
Q ss_pred --------EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCC-------Ccc-----C-CCCc-EEEeCCc
Q 020548 66 --------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-------SPA-----R-LGAD-VVVHSIS 122 (324)
Q Consensus 66 --------~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~-------~~~-----~-~~~d-~~~~S~s 122 (324)
++++++|+. .|.+.++++|+++|++++++++||||| +++.+ .++ . .|+| +++.|.|
T Consensus 307 ~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStH 385 (755)
T PRK15029 307 DKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTH 385 (755)
T ss_pred hccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchh
Confidence 899999854 799999999999999999999999999 43422 222 2 5788 9999999
Q ss_pred cccccCCCeeEEEEEcChh---H-HHHHHHhhhhhhhccCCCCCHHHHHHH--h-cCcc--cHHHHHHHHHHHHHHHHHH
Q 020548 123 KFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMNPKVAFEL--S-ERIP--HLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~~~~~~~l~~~ 193 (324)
|.+++ ...++++-.+.+ + .+.++.... ...+++|+-...+-+ . ..+. .-.....+..+.+..+++.
T Consensus 386 KtL~a--lTQaS~LHv~~~~~~id~~r~~~~l~---~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~ 460 (755)
T PRK15029 386 KLLNA--LSQASYIHVREGRGAINFSRFNQAYM---MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA 460 (755)
T ss_pred hcccc--hhhhhhheeCCCccccCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 99854 444456633221 1 234443332 234445443222111 1 1111 1123445566777777777
Q ss_pred HHhCC
Q 020548 194 MKKLG 198 (324)
Q Consensus 194 L~~~~ 198 (324)
+++.+
T Consensus 461 l~~~~ 465 (755)
T PRK15029 461 MARLY 465 (755)
T ss_pred HHhcc
Confidence 76653
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=117.49 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=102.5
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.+. .+++++|++++.+...|.+.+ +++|+++|++||+++|+||++.+|.. .-....+|+++
T Consensus 247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt 326 (504)
T PLN02760 247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS 326 (504)
T ss_pred HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE
Confidence 45666652 246889999999888898877 99999999999999999999977632 11223577766
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++|.+++...++ |.+++++++++.+..... ......++++. .++.++..++.++ ...++..++.+++.
T Consensus 327 --lgK~lggG~~Pi-gAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl--~~Aaala~Le~i~~~~l~~~~~~~g~~l~ 401 (504)
T PLN02760 327 --LAKALSSAYMPI-GAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPV--SCAVALEALKIYKERNIPEHVNKIAPRFQ 401 (504)
T ss_pred --ecccccCCcccc-ceEeecHHHHhhhhcccccccCcccCCCCCCCHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899997733476 778888898887753210 00112223333 3333333333322 34555667777777
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|++.. + .|... +..|.|.++.+++.
T Consensus 402 ~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~~ 428 (504)
T PLN02760 402 DGIKAFS-G--SPIIG-------------EIRGTGLILGTEFV 428 (504)
T ss_pred HHHHHHh-c--CCCee-------------eEEeCceEEEEEEe
Confidence 7777641 1 11100 23368899999885
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-12 Score=114.24 Aligned_cols=217 Identities=9% Similarity=0.096 Sum_probs=126.1
Q ss_pred HHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEe
Q 020548 54 MVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVH 119 (324)
Q Consensus 54 ~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~ 119 (324)
.+++.++ .+++++|++++.+...|.+.+ ++++.++|++||+++|+||++.+|... -....+|+++
T Consensus 201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt- 279 (451)
T PRK07678 201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT- 279 (451)
T ss_pred HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE-
Confidence 3555563 257999999998887888864 889999999999999999999776321 1233578887
Q ss_pred CCccccccCCCeeEEEEEcChhHHHHHHHhhh----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 120 S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++|.+++...++ |.+++++++++.+..... ......++++... +.++..++.+. ...++..+..+++.+.
T Consensus 280 -~gK~lggG~~Pi-~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~--aaa~a~l~~l~~~~~~~~~~~~g~~l~~~ 355 (451)
T PRK07678 280 -MAKGITSAYLPL-SATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAAC--ALALKNLEIMENENLIERSAQLGELLLEQ 355 (451)
T ss_pred -eecccccCCcce-eEEEEcHHHHHHHhccCcccccccCCCCCcCHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 899998843687 888889898887753210 0111222333333 33222233322 2344455555666666
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC---------HHHHHHHHHHhhccccccccccccCCccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---------EEKANRLMNYLQNYAQFGFMAVSLGYYET 264 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~ 264 (324)
|++.-.+...+. +..|.|.++.+++.. ......+...+.. .|++.
T Consensus 356 l~~~~~~~~~v~---------------~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~---~Gv~~-------- 409 (451)
T PRK07678 356 LKEELGEHPLVG---------------DIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKE---KGLII-------- 409 (451)
T ss_pred HHHHHhcCCCEE---------------EEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHH---CCcEE--------
Confidence 654211110111 223678899998841 1234556655553 33311
Q ss_pred eeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 265 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+.... .....+.+|++.. ...++++++.+.++++..
T Consensus 410 ---~~~g~~-----------v~~~~~~lrl~Pp-l~it~~eid~~~~~l~~~ 446 (451)
T PRK07678 410 ---GKNGDT-----------VAGYNNVLTLSPP-LVISSEEIAFIVGTLKTA 446 (451)
T ss_pred ---eecCcc-----------ccCCCCEEEEECC-CcCCHHHHHHHHHHHHHH
Confidence 110000 0011368999988 655666666555555443
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=115.41 Aligned_cols=216 Identities=14% Similarity=0.168 Sum_probs=132.3
Q ss_pred HHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.+.. +++.+|++++.+...|.+.+ ++++.++|++||+++|+||++.+|.. .-....+|+++
T Consensus 202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 281 (459)
T PRK05965 202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT 281 (459)
T ss_pred HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE
Confidence 567777732 57899999999888888753 78999999999999999999977732 11233578888
Q ss_pred eCCccccccCC-CeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 119 HSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 119 ~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++|.+++ | .++ |.++.++++++.+..... ..+...++.+.. ++..+..++.++ ...++..+..+++
T Consensus 282 --~gKgl~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~--~Aaa~a~L~~l~~~~l~~~~~~~g~~l 355 (459)
T PRK05965 282 --VAKGLTS-GYVPM-GAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVS--AAVGLEVLRLYHEGGLLANGQKAGPRF 355 (459)
T ss_pred --echhhcc-CCcce-eEEEEcHHHHHHHhccccccccccccCCCCCCHHH--HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8999987 6 487 888889898887753210 011122333333 333332333332 3445556677777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-H----------HHHHHHHHHhhcccccccccccc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-E----------EKANRLMNYLQNYAQFGFMAVSL 259 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~----------~~~~~~~~~l~~~~~~g~~~~~~ 259 (324)
.+.|++.. + +|... +..|.|.++.+++.. . .....+...+.. .|++.
T Consensus 356 ~~~l~~l~-~--~~~v~-------------~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~---~Gll~--- 413 (459)
T PRK05965 356 AAGLDALR-A--HPLVG-------------DVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYA---NGLVF--- 413 (459)
T ss_pred HHHHHhhc-c--CCCEE-------------EEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHh---CCeEE---
Confidence 77777642 1 12110 233689999998841 1 123445444442 33311
Q ss_pred CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc---CCCHHHHHHHHHHHHHhhhhcCC
Q 020548 260 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLDQRWSQFEKALSRMQDSGV 321 (324)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~---~~~~~~~~~~l~~~l~~~~~~~~ 321 (324)
.+ ...+.||+...+ .++.++.++.|+++|..+.+++.
T Consensus 414 --------~~-----------------~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~~~ 453 (459)
T PRK05965 414 --------RA-----------------FGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLADPD 453 (459)
T ss_pred --------Ee-----------------cCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11 013678888441 45566667777778877765554
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-12 Score=115.10 Aligned_cols=199 Identities=17% Similarity=0.180 Sum_probs=121.4
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++.+|++++.+...|...+ +++|.++|+++|+++|+||++.++... ......|+++ ++|.+++ |.
T Consensus 220 ~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~-G~ 296 (441)
T PRK05769 220 EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAG-GL 296 (441)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccC-Cc
Confidence 57899999999888999887 999999999999999999999666321 1122468775 8899986 78
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH-HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG-LRMKEHCHRALIFARRMKKLGLKVLYPGLEDH 209 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~ 209 (324)
++ |+++++++++..... .. ..++.+ ++.. ++.++..++.++ ...++..++.++|.+.|++...+...+.
T Consensus 297 p~-gav~~~~~i~~~~~~-~~-~~T~~g-~p~~--~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~---- 366 (441)
T PRK05769 297 PL-GAVIGRAELMFLPPG-SH-ANTFGG-NPVA--AAAALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIG---- 366 (441)
T ss_pred cc-EEEEEehhhhhcCCC-CC-CCCCCc-CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee----
Confidence 86 889888887643221 11 112322 2222 222222233322 3445567777788887776532111111
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCH------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHH
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 283 (324)
+..|.|.++.+++.+. .....+.+.+.. .|++. .+
T Consensus 367 -----------~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~Gil~-----------~~-------------- 407 (441)
T PRK05769 367 -----------DVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK---RGLLL-----------LG-------------- 407 (441)
T ss_pred -----------eeecceEEEEEEeccCCccccHHHHHHHHHHHHh---CCcEE-----------ec--------------
Confidence 2236788999988521 233445554442 33311 11
Q ss_pred hcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 284 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 284 ~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...+.+||+.. ...++++++.+.+++++.
T Consensus 408 ---~~~~~lr~~p~-l~~t~~~id~~~~~l~~~ 436 (441)
T PRK05769 408 ---AGKSAIRIIPP-LIITEEEADIGLEILEEA 436 (441)
T ss_pred ---CCCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 11367999988 766666666555555443
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-11 Score=110.11 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=99.0
Q ss_pred HHHHHHhhhc-----CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCc
Q 020548 52 HEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGAD 115 (324)
Q Consensus 52 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d 115 (324)
++.+++.+.+ +++.+|++++.+...|.+.+ ++++.++|+++|+++|+||++.+|.. .-....+|
T Consensus 215 ~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PD 294 (464)
T PRK06938 215 LHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPD 294 (464)
T ss_pred HHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCC
Confidence 5677777732 26899999998888887753 78999999999999999999977732 12334678
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
+++ ++|.+++ |.++ |.++.++++ +.+..... .. ..++++.. ++.++..++.+. ...++..+..+++.+.
T Consensus 295 iv~--~gKglgg-G~Pl-sAv~~~~~~-~~~~~~~~-~~-T~~gnpla--~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~ 365 (464)
T PRK06938 295 VVV--LSKAIGG-SLPL-AVVVYREWL-DTWQPGAH-AG-TFRGNQMA--MAAGSATLRYIKEHRLAEHAAAMGERLREH 365 (464)
T ss_pred EEE--eeccccC-CCce-EEEeehhHh-hccCCCCC-CC-CCCcCHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 888 8999987 7897 777777663 43322111 11 22233333 333333333322 2344455556666666
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|+++..+..... +..|.|.++.+++.
T Consensus 366 L~~l~~~~~~i~---------------~VrG~Glm~gie~~ 391 (464)
T PRK06938 366 LRQLQRDYPQLG---------------DVRGRGLMLGVEIV 391 (464)
T ss_pred HHHHHHhCCCee---------------eeeccceEEEEEec
Confidence 665321111111 23368999999985
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-12 Score=115.10 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=110.8
Q ss_pred CCEEEEcCCCchhHHHHHhhh---------cCcccce------eEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcc
Q 020548 15 GGHVVAARTLYGGTHALLTHF---------FPRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTL 77 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG 77 (324)
.++|+.....|++....+... .+...|. .+..++.+|++++++.++. +++++|++++.....|
T Consensus 181 r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G 260 (474)
T PLN02482 181 REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSG 260 (474)
T ss_pred CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCC
Confidence 368999898898854321100 0110121 1233455689999988842 4688999999988889
Q ss_pred cccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.| ++++.++|++||+++|+||++.++.... .....|+++ ++|.+++ |.++ |.+++++++++.+.
T Consensus 261 ~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t--~gK~lgg-G~Pi-gav~g~~ei~~~~~ 336 (474)
T PLN02482 261 FIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTT--LGKVIGG-GLPV-GAYGGRREIMEMVA 336 (474)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEE--ecchhhC-CCce-EEEEEcHHHHHhhc
Confidence 8865 5689999999999999999986653211 223467765 8999986 7887 77799999988875
Q ss_pred Hhhh--hhhhccCCCCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 148 DLHQ--GALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 148 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
.... ...++. +++...++.. .++.+.. +...++..++.+++.+.|++..
T Consensus 337 ~~~~~~~~~T~~-gnpl~~aAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~ 388 (474)
T PLN02482 337 PAGPMYQAGTLS-GNPLAMTAGIHTLKRLQQ-PGTYEYLDKITKKLIQGILEAG 388 (474)
T ss_pred cCCCcccccCcc-hhHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHH
Confidence 3211 011122 2233232222 2222211 2345555666777777776653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-11 Score=116.48 Aligned_cols=238 Identities=15% Similarity=0.115 Sum_probs=157.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 93 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 93 (324)
++++|++++..|+.+...++..+.. .|++++.++ .++|++.+ ++..+++++| |-.|.+.|+++|++++|++|
T Consensus 152 ~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~v~~~~---~~~l~~~~---~~~~v~~q~P-n~~G~ied~~~i~~~~h~~g 223 (939)
T TIGR00461 152 KANKFFVAKDLHPQTKSVLHTRAKP-FGIEVIVVD---CSDIKKAV---DVFGCLLQYP-ATDGSILDYKQLIDALHSHK 223 (939)
T ss_pred CCCEEEECCCCCcchHHHHHHHHHh-cCcEEEEEc---HHHHhhcC---CEEEEEEECC-CCCeEEecHHHHHHHHHHcC
Confidence 4489999999999999999866655 899988874 56666554 5788888888 55899999999999999999
Q ss_pred CEEEEcCCC--CcCCCCccCCCCcEEEeCCccc-----cccCCCeeEEEEEcChhHHHHHHHhhhh--------------
Q 020548 94 VTVVVDNTF--SPLVLSPARLGADVVVHSISKF-----ISGGADIIAGAVCGPANLVNSMMDLHQG-------------- 152 (324)
Q Consensus 94 ~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~-----~~~~g~r~~G~i~~~~~~~~~l~~~~~~-------------- 152 (324)
++++++.-. ..+..+|.++|+|+++++..++ ||||+ +|++..++++.+.+-...-+
T Consensus 224 al~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~---aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~ 300 (939)
T TIGR00461 224 SLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH---AAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLA 300 (939)
T ss_pred CEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc---eeeeeecHhhHhhCCCCceeEEecCCCCccceee
Confidence 999996544 3345678899999998866654 33444 69998888777765321111
Q ss_pred -------hhhccCC----CCCHHHH---H--HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 153 -------ALMLLGP----TMNPKVA---F--ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 153 -------~~~~~~~----~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
..+..+. +...+.+ + +...+.+.+.+.-++...++.++.+.|++.|+++..+.+
T Consensus 301 LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~f---------- 370 (939)
T TIGR00461 301 LQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHELINKTW---------- 370 (939)
T ss_pred cccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc----------
Confidence 0000111 1111111 1 112233445555566678889999999998876543321
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
-..+.++++. ...+++.+++.. .|+. +. ...++.+++|+
T Consensus 371 ---------F~~~~v~~~~-~~~~~i~~~~~~---~gi~---l~-------------------------~~~~~~i~~s~ 409 (939)
T TIGR00461 371 ---------FDTLTVKVGN-GISSELLKAAEE---FNIN---LR-------------------------AVDTTTVGIAL 409 (939)
T ss_pred ---------cceEEEEeCC-CCHHHHHHHHHH---CCCe---ee-------------------------ecCCCEEEEEe
Confidence 1134555542 235556666553 2221 00 01246899999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 020548 297 GYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~ 314 (324)
. ..++.++++.|.+++.
T Consensus 410 ~-E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 410 D-ETTTKADVENLLKVFD 426 (939)
T ss_pred e-cCCCHHHHHHHHHHhc
Confidence 9 8899999999998885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.5e-11 Score=101.69 Aligned_cols=245 Identities=18% Similarity=0.173 Sum_probs=163.1
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcc-cccChHHHHHHHHhc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL-AVANIPELSRLAHDK 92 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG-~~~~~~~i~~l~~~~ 92 (324)
+.++++++..+|+.+.+.++....- +|+++..++.+|++++++. .+..+..++++.|+ -.| ...+++++.+.+|++
T Consensus 163 k~~~~~V~~~vhpqt~~Vl~Tra~~-~g~~i~~~~~~d~~~l~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~ 239 (450)
T COG0403 163 KRNKFLVPKDVHPQTLDVLRTRAEG-LGIEIEVVDADDLDDLESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSA 239 (450)
T ss_pred cCceEEecCCCCHHHHHHHHhhccc-CceEEEEeccchhhhhhhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhc
Confidence 4689999999999999999888776 8999999999999999998 46789999999996 567 556799999999999
Q ss_pred CCEEEE--cCCCCcCCCCccCCCCcEEEeCCccc-----cccCCCeeEEEEEcChhHHHHHHHhhhh-------------
Q 020548 93 GVTVVV--DNTFSPLVLSPARLGADVVVHSISKF-----ISGGADIIAGAVCGPANLVNSMMDLHQG------------- 152 (324)
Q Consensus 93 ~~~~iv--D~~~~~~~~~~~~~~~d~~~~S~sK~-----~~~~g~r~~G~i~~~~~~~~~l~~~~~~------------- 152 (324)
|+++++ |-.-..+...|.++|+|++++|..-. ||||. +||+..+.++.+++-...-|
T Consensus 240 ~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh---ag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rL 316 (450)
T COG0403 240 GALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH---AGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRL 316 (450)
T ss_pred CCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc---eeeeeEhHhHhhcCCCceeeeeecCCCCchhhh
Confidence 988775 43334556788999999999998763 44443 69998888876655211100
Q ss_pred ------------hhhccCCCCCHHHHH-----HHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--CceeCCCCCCCchhH
Q 020548 153 ------------ALMLLGPTMNPKVAF-----ELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHE 213 (324)
Q Consensus 153 ------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~p~~~~~~~~~ 213 (324)
-.+++-++...+.+. +...+...+.+.-++..+.+.++.++|++.+ .++....+
T Consensus 317 aLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~f------- 389 (450)
T COG0403 317 ALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHF------- 389 (450)
T ss_pred hHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccc-------
Confidence 111222222211111 1223445566666778899999999999665 44432220
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
=..+.++++. +....++++... . ++.++ ..+++.+=
T Consensus 390 ------------Fdt~~v~~~~-~~~~~l~~~~~~---~---G~~L~-------------------------~~~~~~~~ 425 (450)
T COG0403 390 ------------FDTFTVRVPE-EVAEALLAAAIA---G---GINLR-------------------------RVDADTVL 425 (450)
T ss_pred ------------eeeEEEecch-hHHHHHHHHHHh---c---CCcee-------------------------eecCCceE
Confidence 0134555543 445555555443 1 11111 11234566
Q ss_pred EEeccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+++. -..+.+.++.|.+++...
T Consensus 426 ia~t-Et~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 426 IALT-ETTTKEDIDALVAAFGGV 447 (450)
T ss_pred EEee-cccCHHHHHHHHHHHhhh
Confidence 7776 566788888888887654
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-11 Score=107.96 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=100.2
Q ss_pred HHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.+.+ +++++|++++.+...|.+.+ +++|.++|++||+++|+||+++++.. .-.....|+++
T Consensus 209 ~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~ 288 (460)
T PRK12403 209 LQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS 288 (460)
T ss_pred HHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE
Confidence 456555522 56889999999888898876 99999999999999999999977632 12233578887
Q ss_pred eCCccccccCC-CeeEEEEEcChhHHHHHHHhhhh--hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHH-HHHHHHHH
Q 020548 119 HSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQG--ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHC-HRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~ 192 (324)
++|.+++ | .++ |.+++++++++.+...... .....++ .+..++.++..++.++ ...++.. ++.+++.+
T Consensus 289 --~gK~lgg-G~~Pi-ga~v~~~~i~~~~~~~~~~~~~~~T~~g--nPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~ 362 (460)
T PRK12403 289 --IAKGLTS-GYVPM-GGLVLSKRIAEALVEQGGVFAHGLTYSG--HPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQR 362 (460)
T ss_pred --Ecccccc-cccce-EEEEECHHHHHHHhcCCCccccCCCCCC--CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999987 5 476 6666778887776532110 1112222 3333333333333332 2344443 56666767
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++...+...+. +..|.|.++.+++.
T Consensus 363 ~L~~l~~~~~~i~---------------~vrG~Gl~~gie~~ 389 (460)
T PRK12403 363 CLREVFGDHPLVG---------------EVQGAGLVAALQFA 389 (460)
T ss_pred HHHHHHhcCCCEE---------------eEeecceEEEEEEc
Confidence 6665321111111 23368999999985
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=113.58 Aligned_cols=92 Identities=11% Similarity=0.208 Sum_probs=71.8
Q ss_pred HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 52 HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
++++++.++. +++++|++++.+...|.+.+ +++|.++|+++|+++|+||++++|... -....+|++
T Consensus 200 ~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~ 279 (451)
T PRK06062 200 LAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI 279 (451)
T ss_pred HHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee
Confidence 5677777732 46899999999888898877 999999999999999999999776321 123357766
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~ 147 (324)
+ ++|.+++ | .++ |.++.++++++.+.
T Consensus 280 t--~gK~lgg-G~~Pi-gav~~~~~i~~~~~ 306 (451)
T PRK06062 280 T--FAKGVNS-GYVPL-GGVAISEAIAATFA 306 (451)
T ss_pred e--echhhhc-CCcCc-EEEEEcHHHHHHhc
Confidence 5 8999987 5 476 77777778888775
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-11 Score=106.19 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=93.9
Q ss_pred hHHHHHHHc-cCCC-CEEEEcCCCchhHHHHHhh----------hcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEe
Q 020548 3 AISSVLMQL-CSSG-GHVVAARTLYGGTHALLTH----------FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~-~~~g-d~vl~~~p~y~~~~~~~~~----------~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 70 (324)
|+..++... ..+| ++|+.....|++.....-. +.+. -..+..++.+|++++++.+ .+++++|+++
T Consensus 93 A~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~--~~~~~~~~~~d~~~l~~~i-~~~~aAvivE 169 (364)
T PRK04013 93 AVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPL--VPGFKHIPFNDVEAAKEAI-TKETAAVIFE 169 (364)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCC--CCCcEEecCCCHHHHHHHh-cCCcEEEEEc
Confidence 455555533 2245 8999999999886433211 1111 1123455666899999999 7889999999
Q ss_pred cCCCCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 71 SISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 71 ~~~nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
+.+...|... | ++++.++|+++|+++|+||++.++... -.....|+++ ++|.+++ |.++ |.++.++
T Consensus 170 pi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~--~gK~lgg-G~P~-~a~~~~~ 245 (364)
T PRK04013 170 PIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVT--MGKGIGN-GVPV-SLTLTNF 245 (364)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEE--ecccccC-Ccee-EEEEecc
Confidence 9888777764 4 899999999999999999998665211 1233578777 8999988 6887 7666665
Q ss_pred hH
Q 020548 141 NL 142 (324)
Q Consensus 141 ~~ 142 (324)
++
T Consensus 246 ~~ 247 (364)
T PRK04013 246 DV 247 (364)
T ss_pred cc
Confidence 54
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-11 Score=108.58 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=110.3
Q ss_pred CCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcc
Q 020548 15 GGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTL 77 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG 77 (324)
..+|+.....|++......... +...+. .+..++.+|++.+++.++. +++.+|++++.++..|
T Consensus 135 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G 214 (428)
T PRK12389 135 RTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFG 214 (428)
T ss_pred CCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCC
Confidence 3678888888887543221110 000111 2334455689999888842 4689999999999899
Q ss_pred cccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.+ +++|.++|+++|+++|+||+++++... -.....|+++ ++|.+++ |.++ |.+++++++++.+.
T Consensus 215 ~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt--~gK~lgg-G~Pi-~av~~~~~i~~~~~ 290 (428)
T PRK12389 215 IVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTA--LGKIIGG-GLPI-GAYGGRKDIMEQVA 290 (428)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeee--echhhcC-CCce-eEEeEHHHHHhhhc
Confidence 8876 899999999999999999999766221 1223567765 8999977 6887 77788888888774
Q ss_pred Hhhh-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHh
Q 020548 148 DLHQ-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~ 196 (324)
.... ......++++...+++ +..++.++ ...++..++.+++.+.|++
T Consensus 291 ~~~~~~~~~T~~gnpl~~Aaa--la~L~~l~~~~l~~~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 291 PLGPAYQAGTMAGNPASMAAG--IACLEVLQQEGVYEKLDRLGAMLEEGILE 340 (428)
T ss_pred cCCCcccccCCccCHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3111 0111222333333322 22222221 3445556666777766665
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=111.37 Aligned_cols=162 Identities=13% Similarity=0.165 Sum_probs=102.0
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|++++.+...|.+.+ +++|.++|++||+++|+||++.++.. .-....+|+++ ++|.+++ |.
T Consensus 221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~ 297 (457)
T PRK05639 221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS-GM 297 (457)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC-CC
Confidence 57999999999888888754 78999999999999999999966632 11233578888 8999987 68
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |.+++++++++ ...... . ...+..+. .+++++..++.+. ...++..++.+++.+.|++...+...+.
T Consensus 298 pi-~av~~~~~i~~-~~~~~~-~-~T~~g~p~--~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~--- 368 (457)
T PRK05639 298 GL-SGVIGRKELMD-LTSGSA-L-LTPAANPV--ISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIG--- 368 (457)
T ss_pred cc-eeEEehHHHHh-hcCCCc-c-cCCCcCHH--HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEE---
Confidence 86 89989988887 322111 1 12223333 3333333333322 3345555666777777766321111111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC------HHHHHHHHHHhh
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMNYLQ 247 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~l~ 247 (324)
+..|.|.++.+++.. ......+.+.+.
T Consensus 369 ------------~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~ 401 (457)
T PRK05639 369 ------------DVRGKGLMIGVEIVKENGKPDPELTGKICWRAF 401 (457)
T ss_pred ------------eeccceeEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 233689999998842 223455655555
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=111.31 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=104.7
Q ss_pred HHHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
.+++++.+. .+++++|++++.+...|...+ ++++.++|++||+++|+||++.++.. .-.....|++
T Consensus 204 ~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~ 283 (460)
T PRK06105 204 ANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL 283 (460)
T ss_pred HHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCee
Confidence 356677663 246899999999888888865 89999999999999999999966632 1123357877
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhh--h---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--G---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
+ ++|.+++...++ |.+++++++++.+..... + .....+++ +..++.++..++.+. ...++..+..+++
T Consensus 284 ~--~gK~lggG~~P~-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gn--pl~~aaa~a~L~~i~~~~l~~~v~~~g~~l 358 (460)
T PRK06105 284 V--MSKQLSSSYQPL-SAVLMNEKVYDPIADESGKIGTFGHGFTASGH--PVAAAVALENLAIIEERDLVGNAAERGARL 358 (460)
T ss_pred e--eecccccCcccc-eEEEEcHHHHHHHhcccccCcccccCCCCCCC--HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6 999998733576 889889888887754211 0 01122222 333333333333332 3456667777777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+.|++. .+. |... +..|.|.++.+++.
T Consensus 359 ~~~L~~l-~~~--~~v~-------------~vrG~Gl~~gie~~ 386 (460)
T PRK06105 359 QARLRAL-ADH--PLVG-------------EVRGVGLIAAVELV 386 (460)
T ss_pred HHHHHHh-hcC--CCeE-------------EEEecceEEEEEEe
Confidence 7777765 221 2100 23368889999884
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-11 Score=110.11 Aligned_cols=152 Identities=12% Similarity=0.108 Sum_probs=97.8
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCC-
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA- 129 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g- 129 (324)
+++.+|++++.+...|...+ ++++.++|+++|+++|.||++.++.. .-....+|+++ ++|.+++ |
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g-G~ 288 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITS-GY 288 (449)
T ss_pred CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccC-CC
Confidence 57999999999888888754 88999999999999999999977632 12233578888 8999987 5
Q ss_pred CeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 130 DIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.++ |.+++++++++.+..... ..+...++++. .+++++..++.+ +...++..+..+++.+.|++.-.+..
T Consensus 289 ~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl--~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 365 (449)
T PRK07481 289 VPL-GATMVNARIADAFEANADFGGAIMHGYTYSGHPV--ACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFE 365 (449)
T ss_pred cCc-eEEEEcHHHHHHHhccCccccccccCCCCCCCHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 576 888888888887753210 01112222232 233333233332 23445556667777777766422111
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+. +..|.|.++.+++.
T Consensus 366 ~i~---------------~vrG~Glm~gi~l~ 382 (449)
T PRK07481 366 LVG---------------DVRGKGLMLALDLV 382 (449)
T ss_pred CeE---------------EEeecceEEEEEec
Confidence 111 23368899999884
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-11 Score=110.55 Aligned_cols=208 Identities=13% Similarity=0.171 Sum_probs=120.9
Q ss_pred HHHHHHhhh--cCCceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~ 118 (324)
++++++.+. .+++.+|++++.+...|... .+++|.++|++||+++|+||+++++... .....+|+++
T Consensus 205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~ 284 (431)
T TIGR03251 205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA 284 (431)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE
Confidence 445555552 36799999999988889875 3889999999999999999999776432 1234678887
Q ss_pred eCCccccccCCCeeEEEEEcCh--hHHHHHHHhh-hhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPA--NLVNSMMDLH-QGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~--~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++|.+ + . +|++.+++ ++........ .... ..++++...+++ ...++.+. ...++..++.+++.+.
T Consensus 285 --~gK~~-~-~---~g~~~~~~i~~~~~~~~~~~~~~~~-T~~gnpl~~aaa--~a~L~~l~~~~l~~~~~~~g~~l~~~ 354 (431)
T TIGR03251 285 --FGKKT-Q-V---CGIMAGRRVDEVADNVFAVPSRLNS-TWGGNLVDMVRA--TRILEIIEEERLVDNARVQGAHLLAR 354 (431)
T ss_pred --ecccC-c-c---ceEEecchHHHhhhhcccCccccCC-CCCCCHHHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 78886 2 2 47776654 2222111111 1111 222333333222 22222221 2234445555555555
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
|++...+ +|.+.. +..+.|.++.+++++......+...+.. .|++. .+.
T Consensus 355 L~~l~~~--~~~~i~------------~vrg~G~~~~i~~~~~~~~~~~~~~l~~---~Gvl~-----------~~~--- 403 (431)
T TIGR03251 355 LHELAAE--FPHLVS------------NPRGRGLMCAFDLPSTADRDEVIRQLYR---EGVLL-----------LGC--- 403 (431)
T ss_pred HHHHHHh--Ccccee------------cccccceeEEEEeCCHHHHHHHHHHHHh---CCeEE-----------ecC---
Confidence 5543111 111000 1125788999999865555667776663 34321 110
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
..+.+|++++ ...++++++.+.+++++
T Consensus 404 --------------g~~~lr~~P~-l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 404 --------------GERSIRFRPP-LTVTREEIDAAIDAIRR 430 (431)
T ss_pred --------------CCCeEEEECC-ccCCHHHHHHHHHHHHh
Confidence 1267999999 88888888888777764
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-11 Score=109.56 Aligned_cols=211 Identities=11% Similarity=0.131 Sum_probs=126.0
Q ss_pred HHHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
.+++++.++ .+++.+|++++.+...|...+ +++|+++|++||+++|+||++.++.. .-.....|++
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv 280 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL 280 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee
Confidence 457777773 256889999999999999987 99999999999999999999966632 1122356776
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
+ ++|.+++...++ |.++.++++++.+..... ......++ .+..++.++..++.+. ...++..++.+++
T Consensus 281 t--~gK~l~gG~~P~-gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g--~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l 355 (442)
T PRK13360 281 T--CAKGLTNGAIPM-GAVFVSSEIHDAFMQGPEAGIEFFHGYTYSG--HPLACAAALATLDLYEREGLLTRAARLAPYW 355 (442)
T ss_pred e--eeeccccCccce-EEEEEcHHHHHHhhcCCccccccccCCCCCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5 899997733676 778788888877643110 00112222 2333333333333322 3445556677777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-----HHHHHHHHHHhhccccccccccccCCccce
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETL 265 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~ 265 (324)
.+.|++... +|.+. +..|.|.+..+.+.. ...+..+...+.. .|++.
T Consensus 356 ~~~l~~l~~---~~~v~-------------~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~---~Gvl~--------- 407 (442)
T PRK13360 356 EDALHSLRD---APHVI-------------DIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFE---KGLMI--------- 407 (442)
T ss_pred HHHHHHhhc---CCCee-------------eeeccceEEEEEEecCCCCcchhHHHHHHHHHH---CCcEE---------
Confidence 777776431 11100 112567676676641 1223445554442 33311
Q ss_pred eccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 266 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+ ..+.+||+.. ...++++++.+.++|++.
T Consensus 408 --~~------------------~~~~lr~~Pp-l~~t~~eid~~~~~l~~~ 437 (442)
T PRK13360 408 --RY------------------TGDILALSPP-LIIEEAQIDELFDILAQA 437 (442)
T ss_pred --Ee------------------cCCEEEEeCC-CccCHHHHHHHHHHHHHH
Confidence 00 1257999988 666666666666666544
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.4e-11 Score=107.81 Aligned_cols=130 Identities=20% Similarity=0.184 Sum_probs=93.5
Q ss_pred CCEEEEcCCCchhHHHHHh-hh-------cCcccce------eEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 15 GGHVVAARTLYGGTHALLT-HF-------FPRACNI------TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~-~~-------~~~~~g~------~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
.++|+.....|++...... .. .+...|+ .+..++.+|++++++.+..+++++|++++.+...|.+.
T Consensus 156 r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~ 235 (453)
T PRK07046 156 RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVL 235 (453)
T ss_pred CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcC
Confidence 4789999988988642221 00 0000121 23344556999999998546899999999888788776
Q ss_pred C----hHHHHHHHHhcCCEEEEcCCCC---cCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 81 N----IPELSRLAHDKGVTVVVDNTFS---PLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 81 ~----~~~i~~l~~~~~~~~ivD~~~~---~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+ ++++.++|+++|+++|+||++. ++.- .-....+|+++ ++|.+++ |.++ |.+++++++++.+..
T Consensus 236 p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t--~gK~lgg-G~Pi-~av~g~~~i~~~~~~ 308 (453)
T PRK07046 236 PEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLV--VGKPIAG-GVPC-AVYGFSAELAERAQA 308 (453)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCcccee--ehhhhcC-CCcc-eeeeehHHHHHHHhh
Confidence 4 7899999999999999999985 2221 11233578876 8999987 7897 999999999988764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=110.47 Aligned_cols=214 Identities=11% Similarity=0.122 Sum_probs=130.7
Q ss_pred CHHHHHHhhhc--CCceEEEEecC-CCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcE
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~-~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~ 116 (324)
|++++++.++. +++.+|++++. +...|... .+++|.++|+++|+++|+||++.++.. .-.....|+
T Consensus 190 d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi 269 (428)
T PRK07986 190 DIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDI 269 (428)
T ss_pred HHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCE
Confidence 56778877732 46889999984 66667643 288999999999999999999866632 112235688
Q ss_pred EEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 117 ~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++ ++|.+++ | .++ |.+++++++++.+...... .+...+++ +..++.++..++.++ ...++..++.+++
T Consensus 270 ~t--~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~g~--p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l 343 (428)
T PRK07986 270 LC--LGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGN--PLACAVANASLSLLESGDWQQQVAAIEAQL 343 (428)
T ss_pred EE--echhhhC-CcccC-cchhchHHHHHHhhcCCCCccccCCCCCcC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76 8999976 5 576 8888888988888642100 01122222 333333333333332 3455566777777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 270 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~ 270 (324)
.+.|++... +|.+. +..|.|.++.+++........+.+.+.. .|++. .+
T Consensus 344 ~~~l~~l~~---~~~i~-------------~vRg~Gl~~~ve~~~~~~~~~~~~~l~~---~Gl~~-----------~~- 392 (428)
T PRK07986 344 REELAPLRD---APMVA-------------DVRVLGAIGVVETTRPVNMAALQRFFVE---QGVWI-----------RP- 392 (428)
T ss_pred HHHHHHHhc---CCCEE-------------eEeccceEEEEEeCCcccHHHHHHHHHH---CCcEE-----------Ee-
Confidence 777776421 12110 2236788999998744345566666553 33311 11
Q ss_pred ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
..+.+|+..- +.-++++++.+.++|++.-+.
T Consensus 393 -----------------~g~~i~~~Pp-l~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 393 -----------------FGKLIYLMPP-YIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred -----------------cCCEEEEeCC-CCCCHHHHHHHHHHHHHHHhh
Confidence 0257899887 666666666666666554333
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=109.65 Aligned_cols=256 Identities=12% Similarity=0.161 Sum_probs=164.7
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc------CCc------eEEEEecCCC
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ------GRT------KVLYFESISN 74 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------~~~------~~v~~~~~~n 74 (324)
.+.+++.||--|+.....|.+...-+ ++-|..++-...+|.++||+.+++ ++| -+|+++...+
T Consensus 213 ~~p~l~~~gsLIiSDelNHaSi~~Ga-----RLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiys 287 (519)
T KOG1357|consen 213 NIPSLLGKGSLIISDELNHASLITGA-----RLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYS 287 (519)
T ss_pred CcceeecCCcceeeccccchheeccc-----cccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeecccee
Confidence 34456778877777777777666544 445777777777899999998842 222 2566678888
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CC---------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LV---------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~---------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
.-|.+.++.+++.+++++.++++.||++ .+ .. ..+...++|+..++++|++++. ||++.+++++.
T Consensus 288 mEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~----GGyiagsk~li 363 (519)
T KOG1357|consen 288 MEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA----GGYIAGSKELI 363 (519)
T ss_pred ccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc----cceecCcHHHH
Confidence 9999999999999999999999999998 22 21 1122236899999999999886 59999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCc---------ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERI---------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
+.++.... ....+.++++..+...+..+ ..-.++.++..+|+.+++..|++.++.+....
T Consensus 364 d~lrt~s~--~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~--------- 432 (519)
T KOG1357|consen 364 DYLRTPSP--SALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNN--------- 432 (519)
T ss_pred hhhccCCC--ceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCC---------
Confidence 98875443 12334444444433332221 12446778889999999999999887544222
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
.++++.+-+-.......|-.++.. .+ +++-.++ .|+++ +-...+|+
T Consensus 433 ----------dSpVvplll~~~~k~~~f~r~~l~---~n-igvVvvg------fPatp--------------l~e~r~R~ 478 (519)
T KOG1357|consen 433 ----------DSPVVPLLLYGPAKIVAFSREMLE---RN-IGVVVVG------FPATP--------------LLESRARF 478 (519)
T ss_pred ----------CCCcceeeecCcccccHHHHHHHh---cC-ceEEEEe------CCCch--------------HHHhHHHh
Confidence 233444444333334444444331 11 1222222 23321 12356888
Q ss_pred EeccCCCHHHHHHHHHHHHHhhh
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
... ...+.+.++.+.++.+...
T Consensus 479 c~S-a~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 479 CLS-ASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred hhc-ccccHHHHHHHHHHHhhhc
Confidence 888 7777766666666666554
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=109.85 Aligned_cols=194 Identities=18% Similarity=0.119 Sum_probs=127.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-----CCceEEEEecC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-----GRTKVLYFESI 72 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-----~~~~~v~~~~~ 72 (324)
|...+++++++|++.|++..+.|....+.- ......|.++..++.. ++++|++.+.. .++++|+++++
T Consensus 56 An~~al~~~~~~~~~vi~~~~aHi~~~E~g--a~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t 133 (290)
T PF01212_consen 56 ANQLALRAHLRPGESVICADTAHIHFDETG--AIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENT 133 (290)
T ss_dssp HHHHHHHHHHHTTEEEEEETTEHHHHSSTT--HHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESS
T ss_pred HHHHHHHHHHhcCCceeccccceeeeeccc--hhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEec
Confidence 456677888899999999998764332211 0001257777666543 79999998854 46899999999
Q ss_pred CCCc-cccc---ChHHHHHHHHhcCCEEEEcCCC-Cc-C---CCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 73 SNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-SP-L---VLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 73 ~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~-~~-~---~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+|.. |+++ ++++|.++||++|+.+++|.+. .. . ...+ ...++|.+..|++|.+++++ |++++++++
T Consensus 134 ~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~ 210 (290)
T PF01212_consen 134 TELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKE 210 (290)
T ss_dssp BTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHH
T ss_pred CcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEccccccc---ceEEEechH
Confidence 8864 7776 4678888999999999999985 11 1 1112 22379999999999998887 888899999
Q ss_pred HHHHHHHhhhhhhhccCCCCC---HHHH-----HHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 142 LVNSMMDLHQGALMLLGPTMN---PKVA-----FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+++....+.. ..|+.+. ...+ ...+..++....+.++..++++++.+.|+..+..+..|.
T Consensus 211 ~i~~~~~~~k----~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~~~~~~~ 278 (290)
T PF01212_consen 211 FIAKARRQRK----RLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEALGGVLPRPV 278 (290)
T ss_dssp HHHHHHHHHH----HHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEECEEEETTS
T ss_pred HHHHHHHHHH----HhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence 7776655544 1121111 1222 123333344445667778889999999999887655444
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=110.93 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=101.7
Q ss_pred HHHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
++++++.+. .+++.+|++++.+...|.+.+ +++|.++|++||+++|+||++.+|.. .-....+|++
T Consensus 206 ~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv 285 (461)
T PRK07482 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLI 285 (461)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEE
Confidence 567777773 256899999998888887753 78999999999999999999977732 1223468888
Q ss_pred EeCCccccccCCC-eeEEEEEcChhHHHHHHHhh--hh---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGAD-IIAGAVCGPANLVNSMMDLH--QG---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ |. ++ |.++.++++++.+.... .+ .+...++++.. ++.++..++.+. ...++..+..++
T Consensus 286 ~--~gKgl~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~--~Aaa~a~L~~~~~~~l~~~~~~~g~~ 359 (461)
T PRK07482 286 T--VAKGLTS-AYAPL-SGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPIC--AAAALANLDILERENLVGNAAEVGAY 359 (461)
T ss_pred E--Ecccccc-Ccccc-ceeeecHHHHHHHhcccccCCccccCCCCCcCHHH--HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8 8999987 54 77 77777888877665311 00 11122233333 333332333322 233445566666
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|++.-.+...+. +..|.|.++.+++.
T Consensus 360 l~~~L~~l~~~~~~v~---------------~vrG~Glm~giel~ 389 (461)
T PRK07482 360 FRARLRAAFGDHPLVG---------------EVRGVGMLAAVEFV 389 (461)
T ss_pred HHHHHHHHHhcCCCEE---------------EEeeceeEEEEEec
Confidence 6666664321111111 23368899999985
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-10 Score=102.53 Aligned_cols=185 Identities=13% Similarity=0.080 Sum_probs=118.5
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHh-hhcCcccce-eEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLT-HFFPRACNI-TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~-~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
.|+.+++.+++ ++||+|++.. .|+. -|. .++.+ .|+ ++..++.+ ++++++. + +.|++++.-
T Consensus 69 ~a~Eaa~~nl~~~~g~~vLv~g-~FG~---r~~~eia~~-~g~~~v~~l~~~~g~~~~~~~ve~---~---~~v~~vhnE 137 (374)
T TIGR01365 69 GAVEMALWSMLGCRGVDVLAWE-SFGK---GWVTDVTKQ-LKLPDVRVLEAEYGKLPDLKKVDF---K---NDVVFTWNG 137 (374)
T ss_pred HHHHHHHHHcCCCCCCeEEEEC-HHHH---HHHHHHHHh-cCCCCcEEEcCCCCCCCCHHHcCC---C---CCEEEecCC
Confidence 36788888888 5899998864 3333 222 33333 666 35554432 6777752 2 226678888
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh-
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ- 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~- 151 (324)
..||...|++++.+.. +++++|||.+ +.+.-.+.++ +.|+++.|..|.+++|++- ++++.+++.++.+.....
T Consensus 138 TSTGv~npv~~i~~~~--~~~lliVDav-Ss~g~~~l~~d~iDv~~tgsQK~L~~ppGl--s~v~vs~~Al~~~~~~~~y 212 (374)
T TIGR01365 138 TTSGVRVPNGDFIPAD--REGLTICDAT-SAAFAQDLDYHKLDVVTFSWQKVLGGEGAH--GMLILSPRAVARLESYTPA 212 (374)
T ss_pred Cchheecccccccccc--CCCcEEEEcc-chhcCCCCChhHCcEEEEechhccCCCCce--EEEEECHHHHHHHhhcCCC
Confidence 8899999987666432 4899999998 4444444444 5999999999999987644 677777777766553110
Q ss_pred ----h-------------hh-hccCCCCCHHHHHHHhcCc------ccHHHHHHHHHHHHHHHHHHHHhCC-Ccee
Q 020548 152 ----G-------------AL-MLLGPTMNPKVAFELSERI------PHLGLRMKEHCHRALIFARRMKKLG-LKVL 202 (324)
Q Consensus 152 ----~-------------~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~ 202 (324)
. .. ....+++.......+...+ ..++.+.+|+.++++.++++++++| +.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~ 288 (374)
T TIGR01365 213 WPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFL 288 (374)
T ss_pred CCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 0 00 0112233333222222212 2488899999999999999999998 4443
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.3e-11 Score=107.77 Aligned_cols=210 Identities=11% Similarity=0.136 Sum_probs=126.3
Q ss_pred HHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+++++.++. +++.+|++++.+...|...+ ++++.++|+++|+++|+||+++++.. .-.....|+++
T Consensus 205 ~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~ 284 (445)
T PRK09221 205 DDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT 284 (445)
T ss_pred HHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE
Confidence 566776631 56899999999999999887 99999999999999999999866632 11223467765
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhh-----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++|.+++...++ |.+++++++++.+..... ......++ .+..++.++..++.+. ...++..++.+++.
T Consensus 285 --~gK~l~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~--~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~ 359 (445)
T PRK09221 285 --FAKGLTNGAIPM-GAVIASDEIYDAFMQGPEYAIEFFHGYTYSA--HPVACAAGLATLDIYREEDLFERAAELAPYFE 359 (445)
T ss_pred --eccccccCcccc-eeeEEcHHHHHhhccCcccccccccccCCCc--CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 899997743676 888888888887653110 00112222 2333333333333322 34566677777888
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHhhccccccccccccCCcccee
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
+.|++... +|.+. +..|.|.+..+++... .....+.+.+.. .|++.
T Consensus 360 ~~l~~l~~---~~~v~-------------~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~---~Gv~~---------- 410 (445)
T PRK09221 360 DAVHSLKG---LPHVI-------------DIRNIGLVAGIELAPRPGAPGARGYEAFMKCFE---KGLLV---------- 410 (445)
T ss_pred HHHHhhcc---CCCEE-------------EEecCceEEEEEEecccccccchHHHHHHHHHH---CCeEE----------
Confidence 87776521 12100 1125677777777521 123445555442 33311
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+ ..+.+||+.. ...++++++.+.++|++.
T Consensus 411 -~~------------------~~~~lr~~Pp-l~~t~~eid~~~~~l~~~ 440 (445)
T PRK09221 411 -RY------------------TGDTIALSPP-LIIEKAQIDELVDALGDA 440 (445)
T ss_pred -ee------------------cCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 10 1257999988 666666666655555443
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=108.24 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=125.5
Q ss_pred HHHHHhhhcCCceEEEEecC-CCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeC
Q 020548 53 EMVNSAIVQGRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHS 120 (324)
Q Consensus 53 ~~l~~~l~~~~~~~v~~~~~-~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S 120 (324)
+.+++.+ .+++.+|++++. +...|... .++++.++|++||+++|+||++.++... -.....|+++
T Consensus 191 ~~~~~~~-~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t-- 267 (422)
T PRK05630 191 RSLELLI-DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMC-- 267 (422)
T ss_pred HHHHHHH-hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeee--
Confidence 4455555 568999999984 88778764 3789999999999999999999666421 1223577774
Q ss_pred CccccccCC-CeeEEEEEcChhHHHHHHHhhh----hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 121 ISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 121 ~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++|.+++ | .++ |.+++++++.+.+..... ......++++ ..++..+..++.+. ...++..++.+++.+.
T Consensus 268 ~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~P--la~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~ 343 (422)
T PRK05630 268 VGKALTG-GFMSF-AATLCTDKVAQLISTPNGGGALMHGPTFMANP--LACAVAHASLEIIETGMWRKQVKRIEAELIAG 343 (422)
T ss_pred eechhhc-Ccccc-ceeeccHHHHHHHhccCCCCccccCCCCcCCH--HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 8999976 5 465 999999998887753100 0011222333 33333222222222 2334556666777776
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
|++.. + +|.+. +..|.|.++.+++.+......+.+.+.. .|++. .+
T Consensus 344 L~~l~-~--~~~v~-------------~vRg~Gl~~~ie~~~~~~~~~~~~~~~~---~Gl~~-----------~~---- 389 (422)
T PRK05630 344 LSPLA-H--LPGVA-------------DVRVLGAIGVVEMEQPVDMEEATQAAVD---HGVWL-----------RP---- 389 (422)
T ss_pred HHHhh-c--CCCee-------------eeeccccEEEEEECCcccHHHHHHHHHH---CCeEE-----------Ee----
Confidence 66432 1 12211 2336899999999743334556655553 33311 10
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+||... +.-++++++.+.++|+..
T Consensus 390 --------------~g~~l~~~Pp-L~it~~~i~~~~~~l~~a 417 (422)
T PRK05630 390 --------------FGRLVYVMPP-YITTSEQIAQICAALAAA 417 (422)
T ss_pred --------------cCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 0257898887 666666666666666544
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-11 Score=107.11 Aligned_cols=176 Identities=12% Similarity=0.106 Sum_probs=111.0
Q ss_pred CHHHHHHhhh--cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 51 DHEMVNSAIV--QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~--~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
+++.+++.+. .+++.+|++++. +...|...+ ++++.++|++||+++|+||++.++... -.....|+
T Consensus 192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi 271 (429)
T PRK06173 192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDI 271 (429)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCE
Confidence 3666777773 257999999985 888887743 789999999999999999999666321 12335787
Q ss_pred EEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh---hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 117 ~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++ ++|.+++ | .++ +.++.++++++.+..... ..+...++ .+..++.++..++.+. ...++..++.+++
T Consensus 272 v~--~gK~l~g-G~~p~-~a~~~~~~i~~~~~~~~~~~~~~~~T~~g--~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l 345 (429)
T PRK06173 272 MC--IGKALTG-GYLTL-SATITTEAIAQTICSGEAKCFMHGPTFMA--NPLACAIAAESIRLLLESPWQQNIQRIEAQL 345 (429)
T ss_pred EE--eehhhhC-Ccccc-ceEEecHHHHHHHhcCCCCccccCCCCCc--CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77 8999976 5 465 888888888887753110 01111122 3344444333333332 2355567777788
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.+.|++.. . +|.+. +..+.|.++.+++.+......+.+.+..
T Consensus 346 ~~~L~~~~-~--~~~v~-------------~vRg~Gl~~~iel~~~~~~~~i~~~l~e 387 (429)
T PRK06173 346 KQELAPAA-E--FDSVA-------------EVRVLGAIGVVEMKEPVNMATLQPRFVE 387 (429)
T ss_pred HHHHHHhh-c--CCCee-------------eeeccceEEEEEeCCcccHHHHHHHHHH
Confidence 88887541 1 12110 1225788999999754445566666653
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-11 Score=108.55 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=103.7
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
++++++.+. .+++.+|++++ ++...|...+ ++++.++|++||+++|+||++.++... -....+|++
T Consensus 208 ~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDiv 287 (453)
T PRK06943 208 LADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFL 287 (453)
T ss_pred HHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeE
Confidence 467777773 25799999998 4888887653 789999999999999999999777421 123357888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh--h--hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ--G--ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
+ ++|.+++ | .++ |.++.++++++.+..... . .....++++.. ++.++..++.++ ...++..+.-+++
T Consensus 288 t--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~--~aaa~a~L~~i~~~~l~~~~~~~G~~l 361 (453)
T PRK06943 288 C--LSKGISG-GYLPL-SLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLA--CRAALATLDLFAEDDVLARNARKSARL 361 (453)
T ss_pred e--eehhhcc-Ccccc-eEEEEcHHHHHhhcccCccCCccCCCCCCCCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 8999987 6 587 888888888887753210 0 11122233333 333332333322 3445556667777
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+.|+++.. +|.+. +..|.|.++.+++.
T Consensus 362 ~~~L~~l~~---~~~v~-------------~vrG~Gl~~gvel~ 389 (453)
T PRK06943 362 RAALAPLAA---HPQVR-------------HLRQRGTIFAFDVA 389 (453)
T ss_pred HHHHHHHhc---CCCEE-------------eEeccccEEEEEEc
Confidence 777776521 12211 22368999999985
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-11 Score=107.54 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=99.0
Q ss_pred HHHHHhhhc-CCceEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCC
Q 020548 53 EMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSI 121 (324)
Q Consensus 53 ~~l~~~l~~-~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~ 121 (324)
+.+++.++. +++++|+++++++..+...| ++++.++|++||+++|+||+++++... -.....|+++ +
T Consensus 218 ~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~ 295 (459)
T PRK06082 218 DYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--I 295 (459)
T ss_pred HHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--e
Confidence 557777732 46899999998876444455 889999999999999999999766321 1233578887 8
Q ss_pred ccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCC
Q 020548 122 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
+|.+++...++ |.++.++++......... . ...++.+.. ++.++..++.+. ...++..++.+++.+.|++...
T Consensus 296 gKgl~gG~~P~-~av~~~~~i~~~~~~~~~-~-~T~~gnpl~--~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~ 370 (459)
T PRK06082 296 GKGLGGGLVPI-AAMITKDKYNTAAQISLG-H-YTHEKSPLG--CAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKA 370 (459)
T ss_pred cccccCCCCcc-eEEEEcHHHHhhccCCCC-C-CCCCcCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99998733587 877777776543311111 1 122233332 333322333322 3455667777777777776422
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+...+. +..|.|.++.+++.
T Consensus 371 ~~~~i~---------------~vrG~Gl~~~ve~~ 390 (459)
T PRK06082 371 KYPLIG---------------DVRGIGLLWGVELV 390 (459)
T ss_pred hCCCee---------------eeeeccceeEEEEc
Confidence 111111 23368999999985
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=106.25 Aligned_cols=162 Identities=12% Similarity=0.131 Sum_probs=99.9
Q ss_pred HHHHHHhhhc---CCceEEEEecCCCC-cccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcE
Q 020548 52 HEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~~---~~~~~v~~~~~~np-tG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~ 116 (324)
++.+++.+.. +++.+|++++.+.. .|.+.+ ++++.++|+++|+++|+||++.++.. .-.....|+
T Consensus 185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi 264 (447)
T PRK06917 185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDI 264 (447)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCE
Confidence 4566776632 46899999987653 445543 78999999999999999999966631 112335787
Q ss_pred EEeCCccccccCCC-eeEEEEEcChhHHHHHHHhhhh--hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQG--ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 117 ~~~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++ ++|.+++ |. ++ |.+++++++++.+...... .+...+++ +..++.++..++.+. ...++..++.+++.
T Consensus 265 ~~--~gK~l~~-G~~Pi-~a~~~~~~i~~~~~~~~~~~~~~~T~~gn--pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 338 (447)
T PRK06917 265 MT--LGKGLGA-GYTPI-AATVVSDRVMEPILRGSRSIMSGHTLSAN--PLSAATALAVLEYMEKHNLPEKAAEKGEYLI 338 (447)
T ss_pred EE--eeehhcc-CCcce-EEEEEcHHHHHHHhccCcccccccCCCCC--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 76 8999976 54 76 8888888888877532110 01122222 333333333333332 34455666667777
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|+++..+...+. +..|.|.++.+++.
T Consensus 339 ~~L~~l~~~~~~i~---------------~vrG~Gl~~~ie~~ 366 (447)
T PRK06917 339 KGLQKVQQQSTIIG---------------DVRGKGLLIGVEFV 366 (447)
T ss_pred HHHHHHHhcCCCEE---------------EEeecceEEEEEEe
Confidence 77766432111111 23368899999884
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.9e-11 Score=106.80 Aligned_cols=211 Identities=11% Similarity=0.084 Sum_probs=130.0
Q ss_pred CHHHHHHhhhc--CCceEEEEecC-CCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~-~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
|++++++.+.. +++++|++++. ++..|... ++++|.++|+++|+++|+||++.++... -.....|+
T Consensus 193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi 272 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDI 272 (427)
T ss_pred HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCE
Confidence 46677777732 46889999985 67666543 5889999999999999999998555321 12235787
Q ss_pred EEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 117 ~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
++ ++|.+++ | ..+ +.++.++++++.+...... .....+++ +..++.++..++.+. ...++..++.+++
T Consensus 273 ~~--~gK~l~g-G~~p~-~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~--p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l 346 (427)
T TIGR00508 273 LC--VGKALTG-GYMTL-SATVTTDKVAQTISSGEAGCFMHGPTFMGN--PLACAVAEASLAILLEGEWQKQVSAIENQL 346 (427)
T ss_pred EE--echhhhc-Ccccc-eEEEEcHHHHHHHhcCCCCccccCCCCCcC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76 8999965 5 365 8888888888888642110 01111222 222222222222221 3346667778888
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 270 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~ 270 (324)
.+.|++... .|... ...|.|.++.+.+.+......+.+++.. .|++. .+
T Consensus 347 ~~~L~~l~~---~~~i~-------------~vrg~G~~~~i~~~~~~~~~~~~~~l~~---~Gv~~-----------~~- 395 (427)
T TIGR00508 347 KRELSPLRK---NPVVK-------------DVRVLGAIGVVEMYKPVNVEELQKKFVE---QGVWI-----------RP- 395 (427)
T ss_pred HHHHHHhhc---CCCEE-------------eEeccccEEEEEECCccCHHHHHHHHHH---CCeEE-----------Ee-
Confidence 888887643 12111 1225788999999743345566666653 33311 11
Q ss_pred ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|++.. ...++++++.+.+++++.
T Consensus 396 -----------------~~~~l~~~pp-l~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 396 -----------------FGKLIYVMPP-YIITTEQLQKLTAALIEA 423 (427)
T ss_pred -----------------cCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 0246899888 666777777777776554
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=102.93 Aligned_cols=187 Identities=19% Similarity=0.130 Sum_probs=114.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccCh
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 82 (324)
|+.++.+.--++.++|+++...|+.+...++.++.. .|++++.++.++-... . ++++.+|++++|+ -.|.+.++
T Consensus 142 a~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~iv~~~~~~~~~~---d-~~~~a~v~vq~Pn-~~G~~ed~ 215 (429)
T PF02347_consen 142 AMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAP-LGIEIVEVPLDEDGTT---D-DDDTAAVMVQNPN-TFGVFEDI 215 (429)
T ss_dssp HHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCH-CCEEEEEE-BBTTCSB-----STTEEEEEEESS--TTSB--TH
T ss_pred HHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhh-CCeEEEEecccccCCc---c-ccCeEEEEeecCC-CCceEeeH
Confidence 343444433344579999999999999988877765 7999988875421100 0 5789999999995 58999999
Q ss_pred HHHHHHHHhcCCEEEEcCCC---CcCCCCccCCCCcEEEeCCccccccC---CCeeEEEEEcChhHHHHHHHhhhh----
Q 020548 83 PELSRLAHDKGVTVVVDNTF---SPLVLSPARLGADVVVHSISKFISGG---ADIIAGAVCGPANLVNSMMDLHQG---- 152 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~---~~~~~~~~~~~~d~~~~S~sK~~~~~---g~r~~G~i~~~~~~~~~l~~~~~~---- 152 (324)
++|.+++|++|+++++ .+- ......|.++|+|+++++ +|.||.| |++-.|++..++++++.+-...-+
T Consensus 216 ~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D 293 (429)
T PF02347_consen 216 KEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKD 293 (429)
T ss_dssp HHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEB
T ss_pred HHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccc
Confidence 9999999999999987 553 223467889999999887 8876644 222259998888877766422110
Q ss_pred ---------------------hhhccCCCCCHHH-----HHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 153 ---------------------ALMLLGPTMNPKV-----AFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 153 ---------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
-++++-++...+. .++...+.+.+.+.-++...++.++.+.|++.
T Consensus 294 ~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 294 ADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp CCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112222222221 12233344557777777899999999999987
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-11 Score=112.88 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH-HhhhcCcccceeEEEecCC----------C-----HHHHHHhhhcC--C
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDIS----------D-----HEMVNSAIVQG--R 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~-~~~~~~~~~g~~~~~~~~~----------d-----~~~l~~~l~~~--~ 63 (324)
+|+..++++.+++||.|++..++|-+.... + .+.|..++++.+. + .+.+++++++. .
T Consensus 201 ~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaL-----iLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~ 275 (720)
T PRK13578 201 ASNKVVTNALLTPGDLVLFDRNNHKSNHHGAL-----IQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPE 275 (720)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCcc
Confidence 467888999999999999999999998863 4 2367888787542 3 45588887432 1
Q ss_pred -------ceEEEEecCCCCcccccChHHHHHH-HHhcCCEEEEcCCC-CcCCCCc---------cCCCCc----EEEeCC
Q 020548 64 -------TKVLYFESISNPTLAVANIPELSRL-AHDKGVTVVVDNTF-SPLVLSP---------ARLGAD----VVVHSI 121 (324)
Q Consensus 64 -------~~~v~~~~~~nptG~~~~~~~i~~l-~~~~~~~~ivD~~~-~~~~~~~---------~~~~~d----~~~~S~ 121 (324)
.+++++++|+ -.|.+.++++|+++ ++.++ ++++|||| +.+.+.| .+.|+| +++.|.
T Consensus 276 ~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QSt 353 (720)
T PRK13578 276 RADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSV 353 (720)
T ss_pred ccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEECh
Confidence 5899999885 47999999999998 68888 99999999 4443333 244889 999999
Q ss_pred ccccccCCCeeEEEEEc
Q 020548 122 SKFISGGADIIAGAVCG 138 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~ 138 (324)
||.+++ ...++++-.
T Consensus 354 HKtL~a--lTQaS~LHv 368 (720)
T PRK13578 354 HKQQAG--FSQTSQIHK 368 (720)
T ss_pred hhcchh--hhhHhhhhc
Confidence 999854 443466633
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=108.25 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=115.3
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc----CCce-EEEEecCCCCcccccChHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ----GRTK-VLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~----~~~~-~v~~~~~~nptG~~~~~~~i~ 86 (324)
.|++++-.|.+....+ .++|+.++.++.+ |+++|++++.+ ..+- +|+.+..+..+|.+.|+++|+
T Consensus 143 ~i~~s~~aH~S~~Kaa-----~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~ 217 (373)
T PF00282_consen 143 VIYVSEQAHYSIEKAA-----RILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIA 217 (373)
T ss_dssp EEEEETTS-THHHHHH-----HHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHH
T ss_pred ccccccccccHHHHhc-----ceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHh
Confidence 5777777899988888 3467777777654 78888888732 2233 566677999999999999999
Q ss_pred HHHHhcCCEEEEcCCCCc--CCCC---ccCC---CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh---
Q 020548 87 RLAHDKGVTVVVDNTFSP--LVLS---PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM--- 155 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~--~~~~---~~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~--- 155 (324)
++|+++++++.||.+|++ +... .... .+|-+..++||+++.|-.. +-+++.++............+..
T Consensus 218 ~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~-~~~l~r~~~~l~~~~~~~~~Yl~~~~ 296 (373)
T PF00282_consen 218 DICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGC-GVLLVRDKSDLRDAFSINADYLGNDD 296 (373)
T ss_dssp HHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS--EEEEESSGGGHHGGGEEEETCTT-S-
T ss_pred hhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccc-eeEEeecccchHHHhccChhhhcccc
Confidence 999999999999999966 2211 1111 5899999999999886655 24446666555433211100000
Q ss_pred ----------ccC--CC--CCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeC
Q 020548 156 ----------LLG--PT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLY 203 (324)
Q Consensus 156 ----------~~~--~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~ 203 (324)
..+ ++ ...+..+..+. +.+.+.+++++..+.++++.+.|++.+. ++..
T Consensus 297 ~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~ 361 (373)
T PF00282_consen 297 RESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN 361 (373)
T ss_dssp SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred cccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 011 11 12233343333 3455778889999999999999999875 5543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-11 Score=109.50 Aligned_cols=161 Identities=9% Similarity=0.044 Sum_probs=102.5
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
++++++.++ .+++.+|++++ ++...|.+.+ ++++.++|+++|+++|+||++.++.. .-.....|++
T Consensus 210 ~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv 289 (460)
T PRK06916 210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIM 289 (460)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCee
Confidence 556677773 25799999998 6888887753 78999999999999999999966632 1123357888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHhh----h-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----Q-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ | .++ |.+++++++++.+.... . ......++.+. .++.++..++.+. ...++..++.++
T Consensus 290 ~--~gK~l~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl--~~aaa~a~l~~l~~~~l~~~~~~~g~~ 363 (460)
T PRK06916 290 T--AGKGLTG-GYLPI-AITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPL--GCAVALANLELYEKTNLIEQVARKTEY 363 (460)
T ss_pred e--eehhhhc-Ccccc-ceeeecHHHHHHhhccccccCccccCCCCCCCHH--HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7 8999987 6 587 88888888887764311 0 00112222223 2333332333222 345556677777
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|+++. + +|.+. +..|.|.++.+++.
T Consensus 364 l~~~l~~l~-~--~~~v~-------------~vrG~Glm~giel~ 392 (460)
T PRK06916 364 VATQLEDLF-A--LKHVG-------------DIRQLGLMVGIELV 392 (460)
T ss_pred HHHHHHHhh-c--CCCeE-------------EeecCCceeeEEee
Confidence 777777652 1 12110 23368889999885
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=101.18 Aligned_cols=254 Identities=12% Similarity=0.070 Sum_probs=155.6
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec--------CCCHHHHHHhhhcCCceEEEEecCCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD--------ISDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~--------~~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
++.+++.+++.+||++++....+.+- -+...+.+ +|...+... ..++++++ . +++.+.|.+++...
T Consensus 83 ~~ea~~~nl~~~~~~~l~~~~G~fg~--r~~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~hnET 156 (365)
T PLN02452 83 QFAAIPLNLCKPGDKADFVVTGSWSK--KAAKEAKK-YCKTNVIASGKDEKYTKIPSVSEWE--L-TPDAKFVHICANET 156 (365)
T ss_pred HHHHHHHhcCCCCCeEEEEECCHHHH--HHHHHHHH-hCCCcEEEecCCCCCCCCCChHHcC--C-CCCCcEEEECCCCC
Confidence 57788888899999888887655432 22223333 454332221 12455542 1 45788999999888
Q ss_pred Ccccc-cChHHHHHHHHhcCCEEEEcCCCCcCCC---CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 75 PTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVL---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 75 ptG~~-~~~~~i~~l~~~~~~~~ivD~~~~~~~~---~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.||.. .|++++. ++++|+|.+. .+.. +..++++|+ .|.+|.+|++| .|+++.++++++.+....
T Consensus 157 stGv~~~~~~~i~------~~~lvVDa~S-s~g~~pidv~~~~v~~--~saqK~lGP~G---l~~v~vr~~~l~~~~~~~ 224 (365)
T PLN02452 157 IHGVEFKDYPDVG------NVPLVADMSS-NFLSKPVDVSKYGVIY--AGAQKNVGPSG---VTIVIIRKDLIGNARPIT 224 (365)
T ss_pred CCcEecCcccccC------CCeEEEECCc-cccCcccCHHHcCEEE--EecccccCCCC---eEEEEEcHHHHhhcccCC
Confidence 99995 7776664 3899999995 3333 333445544 69999998777 488988888887654321
Q ss_pred hhh---h-----hccCCCCCHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHH
Q 020548 151 QGA---L-----MLLGPTMNPKVAFELSERIP------HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 151 ~~~---~-----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~ 215 (324)
..+ . ...-+++.....+.+...++ .++.+.++++++++.+.++|++. ++ ...+. . +.
T Consensus 225 ~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~-y~~~~-~--~~---- 296 (365)
T PLN02452 225 PGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF-YVCPV-E--KS---- 296 (365)
T ss_pred CchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCC-C--hH----
Confidence 110 0 01112333333222222222 36677788899999999999986 44 11111 0 00
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
..+..+++|.+++.....+|++.++. .|+.. .++... ..+ +|+|
T Consensus 297 -------~rs~~~vsF~~~~~~~~~~f~~~~~~---~g~~~-----------~~G~r~--------------~gg-~R~s 340 (365)
T PLN02452 297 -------VRSLMNVPFTLGGSELEAEFVKEAAK---AGMVQ-----------LKGHRS--------------VGG-MRAS 340 (365)
T ss_pred -------HhCCeEEEEEcCCchhHHHHHHHHHH---CCCcc-----------cCCccc--------------cCc-eEEE
Confidence 01455889999866678888888885 34311 122110 123 9999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhhc
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+= ..-..+.++.|.+.++.+.++
T Consensus 341 ~y-na~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 341 IY-NAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred Cc-CCCCHHHHHHHHHHHHHHHHh
Confidence 85 566777889999999888654
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=116.09 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=123.4
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cCCCCcEEEeCCccccccCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGA 129 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~~~~d~~~~S~sK~~~~~g 129 (324)
+++++|++++.+...|.+.+ ++++.++|+++|+++|+||++.+|.... .....|+++ ++|.+|+ |
T Consensus 783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lgg-G 859 (1013)
T PRK06148 783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGN-G 859 (1013)
T ss_pred CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccC-C
Confidence 46899999998888888865 8899999999999999999997663211 223577777 8999987 7
Q ss_pred CeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 130 DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
.++ |.+++++++++.+.....+.. ..++++...+++. ..++.+. ...++..+..+++.+.|++...+.....
T Consensus 860 ~Pl-gav~~~~ei~~~~~~g~~~~~-Tf~gnpla~aaa~--a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~-- 933 (1013)
T PRK06148 860 HPM-GAVVTTREIADSFDNGMEYFN-TFGGNPVSCAIGL--AVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIG-- 933 (1013)
T ss_pred cce-EEEEEcHHHHhhccCCCcccc-CCCCCHHHHHHHH--HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCce--
Confidence 897 888888888887753221111 3333333333332 2232222 3445556666777777766422111111
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC--------HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCH
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET--------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 279 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~--------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 279 (324)
+..|.|.++.+++.. ......+.+.+.. .|++. .+
T Consensus 934 -------------~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~---~Gvl~-----------~~---------- 976 (1013)
T PRK06148 934 -------------DVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE---RGILI-----------GT---------- 976 (1013)
T ss_pred -------------EEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh---CCeEE-----------ec----------
Confidence 234689999999852 1234556666553 33311 11
Q ss_pred HHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 280 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 280 ~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.|..++.+|+... ...+++.++.+.++|++
T Consensus 977 -----~g~~~~vlr~~Pp-l~it~~~id~~l~~l~~ 1006 (1013)
T PRK06148 977 -----EGPHDNVLKIRPP-LIFSRADADHLLEVLDD 1006 (1013)
T ss_pred -----cCCCCCEEEEeCC-ccCCHHHHHHHHHHHHH
Confidence 0222478998887 65555555555554443
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=104.09 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=75.8
Q ss_pred cCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCc
Q 020548 48 DISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGAD 115 (324)
Q Consensus 48 ~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d 115 (324)
+.+|++++++.++. +++++|++++.....|...| +++|.++|++||+++|+||++.++... -.....|
T Consensus 184 ~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PD 263 (433)
T PRK00615 184 PYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPD 263 (433)
T ss_pred CCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCC
Confidence 34578899888842 46889999998888898876 559999999999999999999666211 1223578
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+++ ++|.+++ |.++ |++++++++++.+..
T Consensus 264 i~~--~gK~lgg-G~p~-~av~~~~~i~~~~~~ 292 (433)
T PRK00615 264 ITV--YGKILGG-GLPA-AAVVAHKSIMDHLAP 292 (433)
T ss_pred eEE--EcccccC-Ccce-eeeeecHHHHhhhcC
Confidence 776 8999976 5775 999999999888753
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-11 Score=107.31 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=119.0
Q ss_pred HHHHHHhhh--cCCceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVV 118 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~ 118 (324)
++++++.+. .+++++|++++.+...|.+. .+++|.++|++||+++|+||++.++... -.....|+++
T Consensus 212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 291 (443)
T PRK08297 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA 291 (443)
T ss_pred HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE
Confidence 455566663 26799999999888888774 3889999999999999999999777432 1233678887
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHH-hh---hhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMD-LH---QGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 192 (324)
++|.++. +|++.+++ +.+.... .. .... ..++++.. ++..+..++.+ +...++..+..+++.+
T Consensus 292 --~gK~l~~-----~a~l~~~~-i~~~~~~~~~~~~~~~~-T~~gnpl~--~aaa~a~L~~l~~~~l~~~~~~~g~~l~~ 360 (443)
T PRK08297 292 --FGKKTQV-----CGIMAGRR-VDEVEDNVFAVSSRINS-TWGGNLVD--MVRARRILEVIEEDGLVENAARQGEYLLA 360 (443)
T ss_pred --ecccccc-----cceecchH-HHHhhhhhccCccccCC-CCCccHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8999742 46666553 3222211 10 1111 22222222 22222222222 1344555666666666
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccc
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 272 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~ 272 (324)
.|++...+. |.... ...|.|.++.+++.+......+...+.. .|++ +.|.
T Consensus 361 ~L~~l~~~~--~~~~~------------~vrg~G~~~~i~~~~~~~~~~~~~~l~~---~Gvl-----------~~~~-- 410 (443)
T PRK08297 361 RLEELAAEF--PAVVS------------NVRGRGLMCAFDLPTTADRDEVIRRLWE---EGVL-----------VLPC-- 410 (443)
T ss_pred HHHHHHHHC--CCcce------------eeeccceEEEEEecCHHHHHHHHHHHHH---CCEE-----------EecC--
Confidence 666542111 11000 1125788999999765555667766653 3331 1111
Q ss_pred ccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 273 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|+++. ...++++++.+.+++++.
T Consensus 411 ---------------~~~~lr~~P~-l~~t~~eid~~l~~l~~~ 438 (443)
T PRK08297 411 ---------------GERSIRFRPA-LTVTTEEIDAAIDALRRA 438 (443)
T ss_pred ---------------CCCeEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 1256999888 666666666666555443
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=95.94 Aligned_cols=194 Identities=19% Similarity=0.155 Sum_probs=121.6
Q ss_pred hHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEE--ecC-----CCHHHHHHhhhc----CCceEEEEe
Q 020548 3 AISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTF--VDI-----SDHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~--~~~-----~d~~~l~~~l~~----~~~~~v~~~ 70 (324)
|+..++..++ .+.+-|+++-|.|+-|.+.+.. +|..... .+. .|.++|++.+++ -+++++++.
T Consensus 148 ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l-----~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvI 222 (475)
T KOG0258|consen 148 AIRSILSLLIAGKKTGVLIPIPQYPLYSATISL-----LGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVI 222 (475)
T ss_pred HHHHHHHHHhcCCCCceEeecCCCchhHHHHHH-----hCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEE
Confidence 5677777665 4779999999999999988853 3333222 222 278888887732 368899999
Q ss_pred cCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------CCC---C----cEEEeCCccccccC-
Q 020548 71 SISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLG---A----DVVVHSISKFISGG- 128 (324)
Q Consensus 71 ~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~~~---~----d~~~~S~sK~~~~~- 128 (324)
+|.||||++. .+++|.++|.+++++++.||+|..-.+.+. +++ . .+..+|.||.+-+-
T Consensus 223 NPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gEC 302 (475)
T KOG0258|consen 223 NPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGEC 302 (475)
T ss_pred CCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeee
Confidence 9999999996 588999999999999999999844322110 111 1 36678889988664
Q ss_pred CCeeEEEE-E-c-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----cc-------HHHHHHHHHHHHHHHHHHH
Q 020548 129 ADIIAGAV-C-G-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PH-------LGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 129 g~r~~G~i-~-~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~l~~~L 194 (324)
|.| ||++ + . +++....+.+... ...+.....+........-. .. .+......+.+++.+.+.+
T Consensus 303 G~R-GGYmEv~n~~prv~~qi~Kl~s--i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ 379 (475)
T KOG0258|consen 303 GQR-GGYMESLNRDPRVKQQIKKLAS--IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAF 379 (475)
T ss_pred ccc-CCeeecccCChhHHHHHHHHHh--hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHH
Confidence 445 7998 2 2 3455555554433 11333333333222222110 11 1223344567777788888
Q ss_pred HhCCC-ceeCC
Q 020548 195 KKLGL-KVLYP 204 (324)
Q Consensus 195 ~~~~~-~~~~p 204 (324)
++... .++.|
T Consensus 380 ns~~gi~cn~~ 390 (475)
T KOG0258|consen 380 NSLEGISCNPV 390 (475)
T ss_pred hhcCceeeccC
Confidence 87643 55533
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=115.78 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cCCCCcEEEeCCccccccCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGA 129 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~~~~d~~~~S~sK~~~~~g 129 (324)
+++.+|++++.+...|.+.+ ++++.++|++||+++|+||++.+|...- .....|+++ ++|.+|+ |
T Consensus 743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~-G 819 (972)
T PRK06149 743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGN-G 819 (972)
T ss_pred CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccC-C
Confidence 57899999998888898876 8999999999999999999996663211 223578875 8999976 6
Q ss_pred CeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 130 DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
.++ |.+++++++++.+........ ..++++...+ ..+..++.++ ...++..+.-+++.+.|++...+.....
T Consensus 820 ~Pl-~av~~~~~i~~~~~~~~~~~s-T~~gnP~~~a--aala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~-- 893 (972)
T PRK06149 820 HPL-GAVITRREIAEALEAEGYFFS-STGGSPVSCR--IGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIG-- 893 (972)
T ss_pred eee-EEEEEcHHHHhhhccCCcccC-CCCCCHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeE--
Confidence 887 999999998887754211111 2233333333 3332333322 2334445555667777765421111111
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhc
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQN 248 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~ 248 (324)
...|.|.++.+++. .......+.+.+..
T Consensus 894 -------------~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~ 929 (972)
T PRK06149 894 -------------AVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLE 929 (972)
T ss_pred -------------EEeecceEEEEEEecCcccCCCChHHHHHHHHHHHh
Confidence 23368999999883 12334566666653
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-11 Score=107.76 Aligned_cols=207 Identities=18% Similarity=0.159 Sum_probs=120.4
Q ss_pred CHHHHHHhhhc--CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC--Cc
Q 020548 51 DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG--AD 115 (324)
Q Consensus 51 d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~--~d 115 (324)
+++++++.+.. +++.+|++++.+...|.+.+ ++++.++|+++|+++|+||++.++.... .... .|
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD 316 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD 316 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC
Confidence 35567777732 46899999999988898876 8999999999999999999996664311 1222 78
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
+++ ++|.+++. |++++++. ......... .. ..++.+. .++..+..++.+. ...++..+.-+++.+.
T Consensus 317 i~t--~gK~lg~g-----G~~~~~~~-~~~~~~~~~-~~-T~~gnp~--~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~ 384 (464)
T TIGR00699 317 MVT--FSKKFQTA-----GYFFHDPA-FRPNKPYRQ-FN-TWMGDPS--RALILREIIQEIKRKDLLENVAHVGDYLYTG 384 (464)
T ss_pred EEE--ehhhhccC-----Cccccchh-ccCCCCccc-cc-CCCCCHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 866 89999642 44443321 111001111 11 2222222 2222222222221 2334445555666666
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCC--CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEY--GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
|++...+ +|.... +.. |.|.++.+++++......+.+.+.. .|++. .+
T Consensus 385 L~~l~~~--~~~~i~------------~vRg~G~Glm~gie~~~~~~~~~i~~~~~~---~Gvl~-----------~~-- 434 (464)
T TIGR00699 385 LEDLQKK--YPEFIQ------------NLRGKGRGTFIAWDTPDEAKRDKLLKKARN---NGVNI-----------GG-- 434 (464)
T ss_pred HHHHHHh--CCCcee------------eecccCeEEEEEEecCCHHHHHHHHHHHHH---CCcEE-----------ec--
Confidence 6654211 120000 111 5799999999765556677777664 33311 11
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
...+.|||+.. +.-++++++.+.++|++
T Consensus 435 ---------------~g~~~ir~~Pp-l~it~~eid~~~~~l~~ 462 (464)
T TIGR00699 435 ---------------CGVKAIRLRPM-LVFQKHHADIFLEIISK 462 (464)
T ss_pred ---------------CCCCeEEEeCC-CCCCHHHHHHHHHHHHH
Confidence 01367999998 77777777777777654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=104.48 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=98.8
Q ss_pred HHHHHhhh---cCCceEEEEecCCC-CcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISN-PTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~n-ptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
+++++.+. .+++.+|++++.+. ..|...+ ++++.++|++||+++|+||++.++.. .-....+|++
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv 265 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLV 265 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCee
Confidence 56666552 25789999999875 3466643 88999999999999999999977732 1223457888
Q ss_pred EeCCccccccCCC-eeEEEEEcChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHH
Q 020548 118 VHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFAR 192 (324)
Q Consensus 118 ~~S~sK~~~~~g~-r~~G~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 192 (324)
+ ++|.+++ |. ++ |.++.++++++.+..... ..+...++.+...+ .++..++.++ ...++..+..+++.+
T Consensus 266 ~--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~a--aa~a~l~~i~~~~l~~~~~~~g~~l~~ 339 (443)
T PRK07483 266 T--IAKGLGA-GYQPI-GAVLASDRIYDAIADGSGFFQHGHTYLGHATACA--AALAVQRVIAEDGLLANVRARGEQLRA 339 (443)
T ss_pred e--ehhhhcc-Ccccc-EEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8 8999977 64 87 888888888887753210 01112223333332 2222232221 344555666666666
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++.-.+..... +..|.|.++.+++.
T Consensus 340 ~L~~l~~~~~~i~---------------~vRG~Glm~gie~~ 366 (443)
T PRK07483 340 RLRERLGQHPHVG---------------DIRGRGLFVGVELV 366 (443)
T ss_pred HHHHHHhcCCCee---------------eEeecccEEEEEEe
Confidence 6665311110011 22368889999884
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=99.89 Aligned_cols=139 Identities=27% Similarity=0.274 Sum_probs=103.2
Q ss_pred chHHHHHHHccCCCCEEEEcC-----CCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-----TLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-----p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++.. +.+|+++. +..+.....++ ..|.++..+... ...+++.++ .+++++++=.+-+
T Consensus 94 aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~d~~~-----~aG~~l~EvG~tn~t~~~d~~~AI-ne~ta~llkV~s~ 166 (395)
T COG1921 94 AAVLLTLNALAE-GKEVVVSRGELVEGGAFRVPDIIR-----LAGAKLVEVGTTNRTHLKDYELAI-NENTALLLKVHSS 166 (395)
T ss_pred HHHHHHHhhhcc-CCeEEEEccccccCCCCChhHHHH-----HcCCEEEEecccCcCCHHHHHHHh-ccCCeeEEEEeec
Confidence 356666666665 55666554 36667777773 367777776543 789999999 8888877766555
Q ss_pred CCcccc--cChHHHHHHHHhcCCEEEEcCCCCcCC------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 74 NPTLAV--ANIPELSRLAHDKGVTVVVDNTFSPLV------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 74 nptG~~--~~~~~i~~l~~~~~~~~ivD~~~~~~~------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|- |.. .+.++++++||++|+++++|.+-+... ......|+|+|++|..|.++||. +|+|++++++++.
T Consensus 167 ~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq---aGii~GkKelI~~ 242 (395)
T COG1921 167 NY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ---AGIIVGKKELIEK 242 (395)
T ss_pred cc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc---cceEechHHHHHH
Confidence 53 555 467889999999999999999853321 12234599999999999998876 7999999999998
Q ss_pred HHHhhh
Q 020548 146 MMDLHQ 151 (324)
Q Consensus 146 l~~~~~ 151 (324)
++...-
T Consensus 243 lq~~~l 248 (395)
T COG1921 243 LQSHPL 248 (395)
T ss_pred HHhhhh
Confidence 876543
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=104.73 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=98.4
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~ 118 (324)
+.+++.+. .+++.+|++++.+...|...+ +++|+++|++||+++|+||++.+|.. .-....+|+++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 285 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT 285 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee
Confidence 55655442 257899999998888888765 88999999999999999999977632 11223577776
Q ss_pred eCCccccccCC-CeeEEEEEcChhHHHHHHH-hhh-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHH-HHHHHHHHH
Q 020548 119 HSISKFISGGA-DIIAGAVCGPANLVNSMMD-LHQ-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEH-CHRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~ 192 (324)
++|.+++ | .++ |.+++++++++.+.. ... ......+++ +..++..+..++.++ ...++. .+..+++.+
T Consensus 286 --~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~T~~gn--pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~ 359 (456)
T PRK07480 286 --IAKGLTS-GYIPM-GAVGVGDRVAEVLIEEGGEFNHGFTYSGH--PVAAAVALANLRILRDEGIVERVRDDTGPYLQK 359 (456)
T ss_pred --eehhhcc-CCccc-eEEEEcHHHHHHHhcCCCCcccCCCCCcC--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8999987 5 476 777778888877732 110 011122233 333333333333322 233444 355666666
Q ss_pred HHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++.. + +|... +..|.|.++.+++.
T Consensus 360 ~l~~l~-~--~~~i~-------------~vrG~Glm~gie~~ 385 (456)
T PRK07480 360 RLRELA-D--HPLVG-------------EVRGVGLVGAIELV 385 (456)
T ss_pred HHHHhh-c--CCCee-------------eEEeecceEEEEEe
Confidence 666531 1 12100 23368999999984
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-10 Score=103.48 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=101.3
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-----C---ccCCCCcEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-----S---PARLGADVV 117 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-----~---~~~~~~d~~ 117 (324)
+.+++.+. .+++++|++++.+...|...+ ++++.++|++||+++|+||++.+|.. . -....+|++
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDiv 286 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDII 286 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEE
Confidence 34444442 257899999999888898865 88999999999999999999966632 1 123357877
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHh---h--hhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDL---H--QGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ | .++ |.+++++++++.+... . ...+...++++. .++.++..++.+. ...++..+..++
T Consensus 287 t--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl--~~aaa~a~Le~i~~~~l~~~~~~~g~~ 360 (466)
T PRK07036 287 T--FAKGLTS-GYQPL-GAVIISERLLDVISGPNAKGNVFTHGFTYSGHPV--ACAAALKNIEIMEREGLCEHVREVGPY 360 (466)
T ss_pred E--Ecccccc-Ccccc-EEEEEcHHHHHHHhcccCcCcccccCCCCCCCHH--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7 8999976 6 476 8888888888877532 0 001112222333 3333333333332 344556666777
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|++.. + +|.. . +..|.|.++.+++.
T Consensus 361 l~~~L~~l~-~--~~~v-~------------~vrG~Gl~~~ve~~ 389 (466)
T PRK07036 361 FEERLASLR-E--LPLV-G------------DVRGDHLMACVECV 389 (466)
T ss_pred HHHHHHHhc-c--CCCE-E------------EEEeeceEEEEEEc
Confidence 777776541 1 1210 0 23468999999985
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=91.19 Aligned_cols=220 Identities=17% Similarity=0.186 Sum_probs=138.5
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHh-hhcCcccceeEEE-------ecCC----CHHHHHHhhhcCCceEEEEe
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLT-HFFPRACNITTTF-------VDIS----DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-~~~~~~~g~~~~~-------~~~~----d~~~l~~~l~~~~~~~v~~~ 70 (324)
|.+.+.+++++|+|+|+--+.-.+++...-. .-..+ ....-++ ++.. |-|.|++....-++|+++..
T Consensus 118 ANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kk-ISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG 196 (477)
T KOG2467|consen 118 ANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKK-ISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAG 196 (477)
T ss_pred hhhHHHhhhcCCCCeeeeccCCCCCccccccccCCce-eeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEec
Confidence 5677888999999999987754444332210 00011 0111111 1111 77888876545688988865
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---- 140 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---- 140 (324)
.... -...|.++++++|.+.|+++++|-++ +++. .+|+++ +|+|..+.||++-|| | ||.|+-++
T Consensus 197 ~SaY--~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsLRGP--R-g~mIFyRkGvk~ 270 (477)
T KOG2467|consen 197 TSAY--SRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSLRGP--R-GAMIFYRKGVKS 270 (477)
T ss_pred cccc--hhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccccccCC--c-ceeEEEeccCCc
Confidence 4322 35679999999999999999999998 5553 456665 899999999998765 4 68775333
Q ss_pred -----------hHHHHHHHhhhhhhhccCCCCCHHHHHH-HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 141 -----------NLVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 141 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++-++++..-. .+-..|+.....++.+ ++.+. ..+.++.++..+|++.+.+.|.+.|.++..-+.
T Consensus 271 ~~~k~g~~i~ydlE~kINfaVF-P~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGT 349 (477)
T KOG2467|consen 271 IKPKQGKEILYDLEDKINFAVF-PGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGT 349 (477)
T ss_pred CCCCCCCcceechhhhhhhhcc-ccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCc
Confidence 22233332211 1112333333222222 23222 336678888899999999999999997654432
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
. ..++.+.+. ++..++.+++.+.+
T Consensus 350 D------------------nHlvLvDLr~~G~dGarvE~vle~~~I 377 (477)
T KOG2467|consen 350 D------------------NHLVLVDLRPKGVDGARVEKVLELCHI 377 (477)
T ss_pred c------------------ceEEEEeccccCCchHHHHHHHHHhhh
Confidence 1 226677776 56778888888775
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=104.62 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++.+|++++.+...|...+ ++++.++|+++|+++|+||++.+|.. .-....+|+++ ++|.+++ |.
T Consensus 224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~g-G~ 300 (459)
T PRK06931 224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGG-GL 300 (459)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccC-Cc
Confidence 35899999998888887753 88999999999999999999977731 12234578888 8999987 68
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
++ |.++.++++ +.+..... .. ..++++...++ ++..++.+. ...++..+..+++.+.|++...+.....
T Consensus 301 Pi-~av~~~~~~-~~~~~~~~-~~-T~~gnpla~aa--ala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~--- 371 (459)
T PRK06931 301 PL-AVLGIKKEF-DAWQPGGH-TG-TFRGNQLAMAT--GLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIG--- 371 (459)
T ss_pred ce-eeeeeHHHH-hhccCCCC-CC-CCCCCHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeE---
Confidence 97 777776653 44422211 11 22333333332 222222221 2334445555666666655311110111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|.++.+++.
T Consensus 372 ------------~vrG~Glm~giel~ 385 (459)
T PRK06931 372 ------------NVRGRGLMIGIEIV 385 (459)
T ss_pred ------------eEecCceEEEEEEc
Confidence 23368999999984
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=103.98 Aligned_cols=161 Identities=13% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~ 117 (324)
++++++.+. .+++.+|++++ ++...|...+ ++++.++|+++|+++|+||++.++.. .......|++
T Consensus 201 l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv 280 (466)
T PRK07030 201 FAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFL 280 (466)
T ss_pred HHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEE
Confidence 456677773 25789999998 5777787753 78999999999999999999977642 1233467888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHHHhh----h-hhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----Q-GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALI 189 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 189 (324)
+ ++|.+++ | .++ |.++.++++++.+.... . ......++.+.. +++++..++.++ ...++..+.-++
T Consensus 281 ~--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla--~aaa~a~L~~i~~~~l~~~~~~~G~~ 354 (466)
T PRK07030 281 C--LSKALTG-GYLPL-AAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLA--CAAALATLDIFEQDNVIENNRALARR 354 (466)
T ss_pred e--eehhccC-Ccccc-eEEEecHHHHHHHhcccccccccccCCCCCCCHHH--HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 7999987 6 487 88888989888775310 0 011122233333 333332333322 344555666777
Q ss_pred HHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 190 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.+.|++.. + +|.+. +..|.|.++.+++.
T Consensus 355 l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~~ 383 (466)
T PRK07030 355 MAEATAHLA-D--HPHVA-------------EVRQTGMILAIEMV 383 (466)
T ss_pred HHHHHHHHh-c--CCCEE-------------EeEeceeEEEEEec
Confidence 777776642 1 12110 23368999999884
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=104.44 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=71.0
Q ss_pred HHHHHHhhh--cCCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 52 HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 52 ~~~l~~~l~--~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
++.+++.+. .+++.+|++++ .++..|.+.+ ++++.++|+++|+++|+||++.+|... -.....|++
T Consensus 223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv 302 (472)
T PRK08742 223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLL 302 (472)
T ss_pred HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEE
Confidence 466666663 25789999998 5777887643 789999999999999999999776421 123357888
Q ss_pred EeCCccccccCC-CeeEEEEEcChhHHHHHH
Q 020548 118 VHSISKFISGGA-DIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 118 ~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~ 147 (324)
+ ++|.+++ | .++ |.++.++++++.+.
T Consensus 303 ~--~gKgl~g-G~~Pl-aav~~~~ei~~~~~ 329 (472)
T PRK08742 303 C--LSKGLTG-GFLPL-SAVLATQQLYDAFL 329 (472)
T ss_pred E--EcccccC-CCCCc-ceeeccHHHHHHhh
Confidence 8 8999977 5 477 88888888887764
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-09 Score=87.58 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=131.5
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccc----eeEEEecCC----CHHHHHHhhhcCCce-EEEEec-CCCCcccccC---
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACN----ITTTFVDIS----DHEMVNSAIVQGRTK-VLYFES-ISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g----~~~~~~~~~----d~~~l~~~l~~~~~~-~v~~~~-~~nptG~~~~--- 81 (324)
...|.+++|+|..+..++.. .| ....+++.. |++.+...++..... ++++.. .+||||.-+.
T Consensus 125 ~~~VY~SnPTW~nH~~if~~-----aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQ 199 (410)
T KOG1412|consen 125 KNTVYVSNPTWENHHAIFEK-----AGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQ 199 (410)
T ss_pred cceeEecCCchhHHHHHHHH-----cCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHH
Confidence 56799999999999999953 44 234455543 788888888433333 444444 5999998764
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCCccC-----------CCC-cEEEeCCccccccCCCeeEEEE---EcChhHHHHH
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-----------LGA-DVVVHSISKFISGGADIIAGAV---CGPANLVNSM 146 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~-----------~~~-d~~~~S~sK~~~~~g~r~~G~i---~~~~~~~~~l 146 (324)
..+|++..++.+...+.|-+|.+|.....+ .|. -+++.||+|.||..+.|+ |.+ +.++..+..+
T Consensus 200 W~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRv-Gnltvv~~n~a~i~~v 278 (410)
T KOG1412|consen 200 WKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERV-GNLTVVVNNPAVIAGV 278 (410)
T ss_pred HHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccc-cceEEEecChhHHHHH
Confidence 567777788899999999999777532211 132 589999999999999997 755 4555555555
Q ss_pred HHhhhhhhhccCCCCCHHHHHH---HhcCcc-------cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 147 MDLHQGALMLLGPTMNPKVAFE---LSERIP-------HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
.+-..-..+...+.|.+..+-. .+...+ .+...-.|+.+.|..|++.|..++. |+ .+.++.
T Consensus 279 ~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~T----PG-----tWDHI~ 349 (410)
T KOG1412|consen 279 KSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKT----PG-----TWDHIT 349 (410)
T ss_pred HHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC-----cHHHHH
Confidence 4332211123333444443333 232221 1233445567778888888877653 33 222222
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+ ..++|++.=-.+...+.+.+....
T Consensus 350 ~-------QiGMFSyTGLtp~qV~~li~~h~v 374 (410)
T KOG1412|consen 350 Q-------QIGMFSYTGLTPAQVDHLIENHKV 374 (410)
T ss_pred h-------hccceeecCCCHHHHHHHHHhceE
Confidence 2 345888874455556666666443
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-09 Score=91.30 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=154.9
Q ss_pred hHHHHHHHccCCCCEEE--EcCCCchhHHHHHhhhcCcccceeEEEec---------CCCHHHHHHhhhcCCceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVV--AARTLYGGTHALLTHFFPRACNITTTFVD---------ISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl--~~~p~y~~~~~~~~~~~~~~~g~~~~~~~---------~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
++.++...++++||+++ +....|.. . +...+.+ +| .+..+. ..+++++ .+ +++.+.|++++
T Consensus 80 ~~ea~~~Nll~~g~~~~~~~~tG~fg~-r--~~~ea~~-~g-~v~~~~~~~~~~~~~~p~~~~~--~~-~~d~~~v~~t~ 151 (364)
T PRK12462 80 QFSMIPMNFSRPGAAAPEYVTTGYWSR-K--AIGEASR-VA-AMRVVWDGAASGYRTLPSLAEL--DW-DARAPFRHYVS 151 (364)
T ss_pred HHHHHHHHcCCCCCcEEEEEeCCHHHH-H--HHHHHHh-cC-CceEecCcCCCCCCcCCCHHHh--cc-CCCCcEEEEcc
Confidence 56778888899999665 44343332 2 1222223 44 232222 1244554 22 45678888888
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
-...+|...+ ++.+.+++++|+|.+ +.+.-.|.++ ..|++..+..|.+|++| .++++.++++++......
T Consensus 152 NETstGv~~~-----~~~~~~~~llvvD~s-S~~~s~pid~~~~dvi~agsQKnlgP~G---ltvvivs~~al~~~~~~~ 222 (364)
T PRK12462 152 NETVEGLQFP-----DAAGLPDSPLIADMS-SDFMSRPFDVEAYGMVYAHAQKNLGPAG---VTVAIIRRALLERVPDTL 222 (364)
T ss_pred CCCCceEecC-----cccccCCCeEEEEcC-chhhCCCCChHHccEEEeeccccCCCCc---eEEEEECHHHHhhccccC
Confidence 8888888875 233346899999998 5555555555 35999999999999776 467777887776654321
Q ss_pred hhh-------hh-ccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHH
Q 020548 151 QGA-------LM-LLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHEL 214 (324)
Q Consensus 151 ~~~-------~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~ 214 (324)
..+ .. ...++|.....+.+...+ ..++.+.+++.+.++.+++++.+.+ +-.. +.-+..
T Consensus 223 p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~-~~~~~~----- 296 (364)
T PRK12462 223 PPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDC-HAHRAA----- 296 (364)
T ss_pred CchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCChhh-----
Confidence 100 00 112344433333322211 2566778889999999999999986 4211 111111
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
.+-..+.|++.+.+...+|++..+. .|+.. +.|.. .-+.+|+
T Consensus 297 ---------RS~mnv~f~~~~~~l~~~f~~~a~~---~gl~~--lkGhr------------------------~vgg~Ra 338 (364)
T PRK12462 297 ---------RSTMNVAFRFRQPRLDTLFKEQSTE---AGFCG--LSGHR------------------------SIGGIRA 338 (364)
T ss_pred ---------cCcceEEEEcCCHHHHHHHHHHHHH---CCCcc--ccCCc------------------------ccCceEE
Confidence 1233577888877778889888885 44311 11110 1245999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
|+= .--+.+.++.|.+.++.+.++
T Consensus 339 s~y-na~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 339 SLY-NAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 995 666778889999999888654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=102.46 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=88.1
Q ss_pred CCEEEEcCCCchhHHHHHh----------hhcCcccceeEEEecCCCHHH----------HHH---hhhcCCceEEEEec
Q 020548 15 GGHVVAARTLYGGTHALLT----------HFFPRACNITTTFVDISDHEM----------VNS---AIVQGRTKVLYFES 71 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~----------~~~~~~~g~~~~~~~~~d~~~----------l~~---~l~~~~~~~v~~~~ 71 (324)
..+|+.....|++...... .+.+ ....+..+|.+++.. +++ ....+++.+|++++
T Consensus 108 r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEP 185 (339)
T PF00202_consen 108 RRKILAFEGSYHGRTLGALSLTGNPPYRKGFGP--LYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEP 185 (339)
T ss_dssp TTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCS--SSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEES
T ss_pred CceEEEeeeeeeccCcccccccCCccccccccc--cccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEec
Confidence 3689999999986432211 1111 112345566666555 222 22256789999999
Q ss_pred CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
.+...|...+ +++|.++|+++|+++|+||+++++.. ......+|+++ ++|.+++ |.++ |.++.++
T Consensus 186 i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~g-G~p~-sav~~~~ 261 (339)
T PF00202_consen 186 IQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLGG-GLPI-SAVLGSE 261 (339)
T ss_dssp SBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGGT-TSSE-EEEEEEH
T ss_pred cccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccc--cccchhh-hhhc-ccccccc
Confidence 8887787642 78999999999999999999977632 12234689998 6799988 5997 9999998
Q ss_pred hHHHHHHHh
Q 020548 141 NLVNSMMDL 149 (324)
Q Consensus 141 ~~~~~l~~~ 149 (324)
++.+.+...
T Consensus 262 ~i~~~~~~~ 270 (339)
T PF00202_consen 262 EIMEAFQPG 270 (339)
T ss_dssp HHHTTSCTT
T ss_pred hhhcccccc
Confidence 888777443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.7e-10 Score=97.98 Aligned_cols=163 Identities=12% Similarity=0.173 Sum_probs=110.1
Q ss_pred HHHHHHhhhc---CCceEEEEecCCCC-cccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcE
Q 020548 52 HEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADV 116 (324)
Q Consensus 52 ~~~l~~~l~~---~~~~~v~~~~~~np-tG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~ 116 (324)
.++|++.+.. +++.++++++...- .|...+ ++++.++|++||+++|+||+-.+|... -.....|+
T Consensus 200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi 279 (449)
T COG0161 200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDI 279 (449)
T ss_pred HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCe
Confidence 4566666643 57899999996665 777754 889999999999999999998777521 22335788
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccC--CCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG--PTMNPKVAFELSERIPHLG--LRMKEHCHRALIFAR 192 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 192 (324)
++ ++|.+++.-.++ |.++..+++.+.+..... .....| .+-.+.+++.++..++-++ ..+++..+...++.+
T Consensus 280 ~~--~aKGLT~GY~Pl-~a~l~~~~I~~~~~~~~~-~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~ 355 (449)
T COG0161 280 LC--LAKGLTGGYLPL-SAVLTSDRIYEAFSDGDA-GAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQA 355 (449)
T ss_pred ee--ecccccccchhh-HhHhhhHHHHHHHhcccC-CeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 88 999999877787 777777788888865411 111223 2344556666555554433 455666777888888
Q ss_pred HHHhC-CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 193 RMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 193 ~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.|++. ... |... +..+.|.+..+++.
T Consensus 356 ~L~~~l~~~---p~Vg-------------dVR~~Gli~~iElv 382 (449)
T COG0161 356 GLQAALADH---PLVG-------------DVRGLGLIGAIELV 382 (449)
T ss_pred HHHHhcccC---CcEE-------------EeeccceEEEEEEe
Confidence 88873 211 1111 23367888889887
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-09 Score=90.61 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=93.6
Q ss_pred EEEEcCCCchhHHHHHhh--hcCcccce-------eEEEecCCCHHHHHHhhhcCC--ceEEEEecCCCCcccccC----
Q 020548 17 HVVAARTLYGGTHALLTH--FFPRACNI-------TTTFVDISDHEMVNSAIVQGR--TKVLYFESISNPTLAVAN---- 81 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~--~~~~~~g~-------~~~~~~~~d~~~l~~~l~~~~--~~~v~~~~~~nptG~~~~---- 81 (324)
++|....+|++-...+-. ..+. ++. .+.....+|..++++.++.++ +.+|++++.+...|.++.
T Consensus 150 ~~Iaf~nsyHG~tlgals~~~~s~-y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peF 228 (433)
T KOG1401|consen 150 KFIAFENSYHGRTLGALSVTGNSK-YGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEF 228 (433)
T ss_pred eEEEEecCcCCcchhHHHhhcccc-cCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHH
Confidence 488888888764322211 1111 232 123333458999999996544 799999999998888853
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+..|+++|+++|+++|.||++.++.... .....|+.+ +.|.+++ |+++ |....++++++.+.+..+
T Consensus 229 l~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~g-GlPi-gA~~v~~kV~~~i~~~~~ 301 (433)
T KOG1401|consen 229 LIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITT--VAKPLGG-GLPI-GATGVRDKVAEMISPGDH 301 (433)
T ss_pred HHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCccee--ehhhccC-Ccee-EEEeehHHHHhhcCCCCc
Confidence 6799999999999999999997765322 222456665 9999987 7997 999999999998876543
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=98.26 Aligned_cols=249 Identities=14% Similarity=0.121 Sum_probs=126.5
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCCE
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT 95 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~ 95 (324)
-+|+...|.|+.|.....-+.. ....+- . |.......- +...-+=++++||||.|.+-. . +.+.-+..
T Consensus 97 ~~VVa~aPYY~~Y~~qt~~f~s----~~y~w~-G-da~~~~~~~-~~~~~IElVTSPNNPDG~lr~--~---V~~g~~~k 164 (363)
T PF04864_consen 97 ASVVAAAPYYSSYPEQTDFFDS----RLYKWA-G-DASNFKNSD-NPSPYIELVTSPNNPDGQLRE--A---VLNGSSGK 164 (363)
T ss_dssp EEEEE-SS--CHHHHHCCCT-B----TTEEEE-E-ECCCGTT-S--CCGEEEEEESS-TTT-----------SSTTTEEE
T ss_pred ceeEecCCCccchHHHHHhccc----cCcccc-c-cHHhhccCC-CCCCeEEEEeCCCCCcccccc--h---hcCCCCcc
Confidence 4799999999999876632211 112221 1 211111110 234455677899999998742 1 23455677
Q ss_pred EEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEE-EcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC
Q 020548 96 VVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 172 (324)
Q Consensus 96 ~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (324)
+|-|-+|. ++..-+...+-|+.++|+||.=|-.|.|+ ||. +.++++.+++..+.. ..+.+.+.-+|+-++.++..
T Consensus 165 ~I~D~AYYWPhyTpI~~~aD~DiMLFT~SK~TGHAGSR~-GWAlVKD~~Va~kM~~y~~-lnTiGvS~dsQLRa~kiLk~ 242 (363)
T PF04864_consen 165 VIHDLAYYWPHYTPITAPADHDIMLFTLSKLTGHAGSRF-GWALVKDEEVAKKMTKYME-LNTIGVSRDSQLRALKILKV 242 (363)
T ss_dssp EEEE-TT-STTTS---S-B--SEEEEEHHHHCS-GGG-E-EEEEES-HHHHHHHHHHHH-HHCSS--HHHHHHHHHHHHH
T ss_pred eeeeeeeecccccccCCCCCCceEEEEEecccCcccccc-ceeeecCHHHHHHHHHHHH-HhcccCcHHHHHHHHHHHHH
Confidence 89999983 33332334467999999999998899998 888 667788898888765 22222233445544443321
Q ss_pred ----cc------c-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHH
Q 020548 173 ----IP------H-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKA 239 (324)
Q Consensus 173 ----~~------~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~ 239 (324)
.. . ++--.+...++-++|.+.+.+.. .+..|.++. .+=.+.++... ....+.|++.+. .+++
T Consensus 243 v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~-rFSLq~~~~-~yC~ff~~~~~---psPafAWlkCe~eed~DC 317 (363)
T PF04864_consen 243 VLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK-RFSLQKFSP-QYCNFFKRVRE---PSPAFAWLKCEREEDEDC 317 (363)
T ss_dssp HHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS-SEEE---SC-EEETTTTCEEE------SEEEEEESSCGGSSH
T ss_pred HHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC-ceecCcCCc-hhccccccccC---CCCCeEEEecCCcccccH
Confidence 11 1 12222334555666666666543 333333211 00011112111 256789999983 3578
Q ss_pred HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 240 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 240 ~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
..++...++..|.|. .+|.+..++|+|+- +.++..+.|.+-|..
T Consensus 318 ~~~l~~~~I~tr~G~-----------------------------~fga~~ryVRlSml---~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 318 YAVLREAKIITRSGV-----------------------------LFGADSRYVRLSML---KRDDDFDQLLERLSK 361 (363)
T ss_dssp HHHHHCTTEEEEEGG-----------------------------GGTS-TTEEEEESS---S-HHHHHHHHHHHHC
T ss_pred HHHHHhCCcccCCCC-----------------------------ccCCCCCeEEEecc---CCHHHHHHHHHHHHh
Confidence 889888887665554 13556799999998 566555665555443
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=91.28 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=90.2
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-cChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~~~~~i~~l~ 89 (324)
+.|++++..|+...... ...|.+++.++.+ |+++|++++ .++++++.+++|+. .|.. .++.+|+++.
T Consensus 158 ~~~LIP~SAHGTNPASA-----am~G~~VV~V~~~~~G~VDlddLk~k~-~~~~AalMiTnPsT-~GvFE~~I~ei~~iv 230 (496)
T COG1003 158 NICLIPDSAHGTNPASA-----AMAGFKVVVVKCDENGNVDLDDLRAKA-EDNLAALMITNPST-LGVFEEDIREICEIV 230 (496)
T ss_pred cEEEeeccccCCChhhH-----hhcCceEEEEecCCCCCccHHHHHHHh-ccceeEEEeccCcc-cccchhhHHHHHHHH
Confidence 68999999999888877 3478898888775 899999999 89999999999955 5666 5799999999
Q ss_pred HhcCCEEEEcCCC--CcC-CCCccCCCCcEEEeCCccccccC
Q 020548 90 HDKGVTVVVDNTF--SPL-VLSPARLGADVVVHSISKFISGG 128 (324)
Q Consensus 90 ~~~~~~~ivD~~~--~~~-~~~~~~~~~d~~~~S~sK~~~~~ 128 (324)
|++|..+..|.+- +-+ ...|.++|.|++=.-+||+|+.|
T Consensus 231 H~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHKTF~iP 272 (496)
T COG1003 231 HEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHKTFCIP 272 (496)
T ss_pred HHcCCEEEecCcchhhhhccccccccccceEEeecccccccC
Confidence 9999999999986 222 25788999999999999999765
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=102.54 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=94.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~-~~~~ 65 (324)
+|+..++++++++||.|++..++|-+....+ .+.|+.++++.+. +.+.+++++++ ++.+
T Consensus 222 ~~n~av~~a~~~~Gd~VLvdRN~HKSv~haL-----ilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak 296 (714)
T PRK15400 222 TANKIVGMYSAPAGSTVLIDRNCHKSLTHLM-----MMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNAT 296 (714)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHH-----HHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCcccc
Confidence 3677888899999999999999999988777 3468888887543 37888888843 2333
Q ss_pred ---EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCc-------cCCCC---c--EEEeCCccccccCC
Q 020548 66 ---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSP-------ARLGA---D--VVVHSISKFISGGA 129 (324)
Q Consensus 66 ---~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~-------~~~~~---d--~~~~S~sK~~~~~g 129 (324)
.+++++| +-.|.+.++++|+++|+.++ +++||||++ +.+.+ +..++ | +++.|.||.+++
T Consensus 297 ~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~a-- 371 (714)
T PRK15400 297 WPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-- 371 (714)
T ss_pred CccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccc--
Confidence 7888888 56899999999999999887 689999943 32222 22345 4 999999999854
Q ss_pred CeeEEEE
Q 020548 130 DIIAGAV 136 (324)
Q Consensus 130 ~r~~G~i 136 (324)
...++++
T Consensus 372 lTQaS~L 378 (714)
T PRK15400 372 FSQASMI 378 (714)
T ss_pred hhHHhHH
Confidence 3333454
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-10 Score=99.58 Aligned_cols=141 Identities=26% Similarity=0.307 Sum_probs=46.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCc---hhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLY---GGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y---~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.+++ +|.+|+++...- ++.+.+- ..... .|.+++.+-.. .+++.++++ +++|++++-.+++|.
T Consensus 73 AAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip-~vm~~-sGa~lvEVGttN~t~~~Dye~AI-~e~Ta~ll~Vh~Sn~ 148 (367)
T PF03841_consen 73 AAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIP-DVMRQ-SGARLVEVGTTNRTHLSDYEKAI-TENTAALLKVHTSNF 148 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc-cccccccccccccccccccccc-ccccc-ccccccccccccccccccccccc-ccccccccccccccc
Confidence 46666666665 578899888433 3322211 11112 57766666443 588999999 899999887777776
Q ss_pred c--ccc--cChHHHHHHHHhcCCEEEEcCCCCcCC-------------CCccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 76 T--LAV--ANIPELSRLAHDKGVTVVVDNTFSPLV-------------LSPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 76 t--G~~--~~~~~i~~l~~~~~~~~ivD~~~~~~~-------------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
. |.. .+++++++++++|++++++|..-+.+. ......|+|++++|..|.+|||. +|++++
T Consensus 149 ~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ---aGiI~G 225 (367)
T PF03841_consen 149 RIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ---AGIIVG 225 (367)
T ss_dssp ------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S----EEEEE
T ss_pred ccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC---eEEEEe
Confidence 4 434 579999999999999999998742111 11244599999999999999887 799999
Q ss_pred ChhHHHHHHHh
Q 020548 139 PANLVNSMMDL 149 (324)
Q Consensus 139 ~~~~~~~l~~~ 149 (324)
++++++.+++.
T Consensus 226 kk~lI~~lk~~ 236 (367)
T PF03841_consen 226 KKELIEKLKKH 236 (367)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHhhC
Confidence 99999998754
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-09 Score=89.62 Aligned_cols=155 Identities=12% Similarity=0.042 Sum_probs=102.0
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCee
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
+.+++.+.++.+...|.+.+ +++..++|+++|.++|.||++++|...- ...++.--+-|++|.+|. |.++
T Consensus 211 ~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn-G~Pl 289 (442)
T KOG1404|consen 211 ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN-GFPL 289 (442)
T ss_pred CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC-CCcc
Confidence 46788999999999999863 8899999999999999999997775321 222444445569999977 7997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
|.++..+++.+-+.+...+..++.|+. .+.++..+....-.-+...++..+-..++.+.|.+...+...-+
T Consensus 290 -~AVvtt~EIa~v~~~~~~~fnTyggnP-~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIG------- 360 (442)
T KOG1404|consen 290 -GAVVTTPEIADVLNQKSSHFNTYGGNP-VACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIG------- 360 (442)
T ss_pred -eeeecCHHHHHHHHhccccccccCCCc-hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCcee-------
Confidence 888888889988887663333344443 33333333222222233344445566667777766543211111
Q ss_pred HHHHHHhccCCCcceEEEEEeC
Q 020548 213 ELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+..|.|-++.+++-
T Consensus 361 --------dVRG~GLm~GvE~V 374 (442)
T KOG1404|consen 361 --------DVRGRGLMLGVELV 374 (442)
T ss_pred --------ecccceeEEEEEEe
Confidence 34478989998875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-08 Score=97.70 Aligned_cols=174 Identities=14% Similarity=0.029 Sum_probs=119.0
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcCC
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 94 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~ 94 (324)
..+|+++...|+.+...++..+.. .|++++. +++++.+ ++++..|++.+|+ -.|.+.|+++|.+++|+.|+
T Consensus 168 ~~~~~v~~~~hP~~~~v~~t~~~~-~g~~i~~------~~~~~~~-~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~ga 238 (954)
T PRK12566 168 SNRFFVDEHCHPQTLSVLRTRAEG-FGFELVV------DAVDNLA-AHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQA 238 (954)
T ss_pred CCEEEECCCCCHHHHHHHHHhhhc-CCcEEEE------cchhhcC-CCCEEEEEEECCC-CceEEccHHHHHHHHHHcCC
Confidence 568999999999999999877766 7888765 3344455 5679999999995 58999999999999999999
Q ss_pred EEEEcCCC---CcCCCCccCCCCcEEEeCCc-----cccccCCCeeEEEEEcChhHHHHHHHhhhh--------------
Q 020548 95 TVVVDNTF---SPLVLSPARLGADVVVHSIS-----KFISGGADIIAGAVCGPANLVNSMMDLHQG-------------- 152 (324)
Q Consensus 95 ~~ivD~~~---~~~~~~~~~~~~d~~~~S~s-----K~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-------------- 152 (324)
+++ +.+- ..+...|.++|+|+++++.. =.||||. +|++..++++.+.+-...-|
T Consensus 239 l~~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~ 314 (954)
T PRK12566 239 LAC-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPH---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMA 314 (954)
T ss_pred EEE-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCC---eeeeeehHHHHhhCCCCccceeecCCCCeeeehh
Confidence 866 3332 33456788999999998543 3455555 69999888877766321111
Q ss_pred -----------hhhccCCCCCHHHHH-----HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 153 -----------ALMLLGPTMNPKVAF-----ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 153 -----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
-++++-++...+.+. +...+.+.+.+.-++...++.++.+.|++.|+++
T Consensus 315 LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~ 379 (954)
T PRK12566 315 LQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKR 379 (954)
T ss_pred hhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222222211111 1222344455555667788899999999987754
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-08 Score=90.35 Aligned_cols=193 Identities=18% Similarity=0.170 Sum_probs=124.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----------CHHHHHHhhhc-CCc-eEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----------DHEMVNSAIVQ-GRT-KVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----------d~~~l~~~l~~-~~~-~~v~ 68 (324)
+|+..++++++++||.|+++.++|.+....+ ...|...+++... +.+.+++++.+ +.. |+++
T Consensus 97 ~ank~vi~a~~~~GD~VLvdRN~HKSi~~gl-----ilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~v 171 (557)
T COG1982 97 TANKAVINAVLTPGDKVLVDRNCHKSIHHGL-----ILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAV 171 (557)
T ss_pred HHHHHHHHhhcCCCCEEEecCCccHHHHHHH-----HHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEE
Confidence 4678889999999999999999999988775 2367777776542 67888887633 344 7888
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcCh-
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPA- 140 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~- 140 (324)
+++|+ -.|.+.++++|+++++++++++.+|++. ..+... ..+.++|+++.|.||.+++ ...+.++-.+.
T Consensus 172 itnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~a--lSQaS~iHv~~~ 248 (557)
T COG1982 172 ITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAA--LSQASMIHVKDG 248 (557)
T ss_pred EecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhh--hhhhHHHhhCCC
Confidence 88885 4799999999999999999999999997 333221 1234899999999999854 33335553332
Q ss_pred --hHHHHHHHhhhhhhhccCCCCCHHH-----HHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCC
Q 020548 141 --NLVNSMMDLHQGALMLLGPTMNPKV-----AFELSERI---PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPG 205 (324)
Q Consensus 141 --~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~ 205 (324)
--.+++..... ...+++|+... ++....+. ...++.+.+..+.++.+.+..++.++ .+..|.
T Consensus 249 ~~~~~~r~nea~~---~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~ 321 (557)
T COG1982 249 RAVNHERFNEALM---MHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPE 321 (557)
T ss_pred ccCCHHHHHHHHH---HHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccc
Confidence 11233333222 12333333221 11111111 11233355556777777777777763 444444
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-09 Score=99.25 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=70.8
Q ss_pred HHHHHhhh-------cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCC
Q 020548 53 EMVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLG 113 (324)
Q Consensus 53 ~~l~~~l~-------~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~ 113 (324)
+.+++.+. .+++.+|++++. +.-.|.+.+ +++++++|++||+++|.||++.+|.. .-....
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 45666663 146899999984 777788753 78999999999999999999977742 122335
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~ 147 (324)
.|+++ ++|.+++ | .++ |.++.++++++.+.
T Consensus 647 PDIi~--~gKgLtg-G~~Pl-aa~l~~~~I~~~f~ 677 (817)
T PLN02974 647 PDIAC--YAKLLTG-GLVPL-AATLATEEVFEAFR 677 (817)
T ss_pred CCEEe--ecccccC-CCCcc-EEEEEcHHHHHhhc
Confidence 78888 9999987 6 687 88888888888875
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-08 Score=96.84 Aligned_cols=183 Identities=11% Similarity=0.103 Sum_probs=114.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------C-----HHHHHHhhhc-C---
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------D-----HEMVNSAIVQ-G--- 62 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------d-----~~~l~~~l~~-~--- 62 (324)
+|+..++++.+++||.|++..++|-+....+ .+.|+.++++.+. + .+.+++++++ +
T Consensus 222 ~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aL-----ilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~ 296 (713)
T PRK15399 222 TSNKIVGMYAAPAGSTLLIDRNCHKSLAHLL-----MMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQ 296 (713)
T ss_pred HHHHHHHHHhcCCCCEEEeecccHHHHHHHH-----HHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcC
Confidence 3677888899999999999999999988777 3478888887643 2 3888888843 2
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEE-EEcCCCCc-CCCCc-------cCC--CCcEE---EeCCccccccC
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTV-VVDNTFSP-LVLSP-------ARL--GADVV---VHSISKFISGG 128 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~-ivD~~~~~-~~~~~-------~~~--~~d~~---~~S~sK~~~~~ 128 (324)
+++++++++| +..|.+.++++|++.| |+.+ ++||||++ +.+.| +.. ++|.+ +.|.||.+++
T Consensus 297 ~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a- 371 (713)
T PRK15399 297 WPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAA- 371 (713)
T ss_pred CceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccc-
Confidence 2368888988 5689999999999999 5666 69999943 33322 112 46766 9999999854
Q ss_pred CCeeEEEEEcChhHH-HHHHHhhhhhhhccCCCCCHHHHHHHhcC---cc--cHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 129 ADIIAGAVCGPANLV-NSMMDLHQGALMLLGPTMNPKVAFELSER---IP--HLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 129 g~r~~G~i~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
...++++-.+..+- +.++.... ...+++|+-...+.+-.. .. .=....++..+.+..+++.+.+..
T Consensus 372 -lTQaS~iHvk~~vd~~~~n~a~~---m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~ 443 (713)
T PRK15399 372 -FSQASLIHIKGEYDEETFNEAFM---MHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLR 443 (713)
T ss_pred -cchheeeeecCCCCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 44346663332221 33333222 133444443221111000 11 112334555666666777776643
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=92.95 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=70.1
Q ss_pred ecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEE
Q 020548 47 VDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVV 118 (324)
Q Consensus 47 ~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~ 118 (324)
++..|++++++.+.. +++++|++++.....+....+++|.++|++||+++|+||++.++.... ....+|+++
T Consensus 169 ~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t 248 (431)
T PRK06209 169 FRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSC 248 (431)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceee
Confidence 344589999998832 468899998865543333458999999999999999999986653221 122456644
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
++|.+++ |.++ |.+++++++++.
T Consensus 249 --~gK~lgg-G~p~-~av~~~~~i~~~ 271 (431)
T PRK06209 249 --FGKALGN-GFAV-SALAGKREYMEL 271 (431)
T ss_pred --ehhhhcC-Cccc-EEEEEHHHHHhh
Confidence 8999987 6775 999998888775
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-08 Score=83.57 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=97.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCC-------------ceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGR-------------TKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~-------------~~~v~ 68 (324)
+++..++.++++.||.|.+..-...+....++. ..-.+.+...+|.+++++.+ .++ -+.++
T Consensus 165 ~ti~S~ipafsKrGDIi~~de~~nfaIq~Glql-----SRS~i~~Fkhndm~~lerll-~E~~~~~~K~~k~~~~Rrfiv 238 (467)
T KOG1358|consen 165 STIESAIPAFSKRGDIIFVDEAVNFAIQKGLQL-----SRSTISYFKHNDMEDLERLL-PEQEDEDQKNPKKALTRRFIV 238 (467)
T ss_pred chhhhcchhhhccCcEEEEehhhhHHHHHHHhh-----hhheeEEecCCCHHHHHHhc-cCcchhhhhccccccceEEEE
Confidence 467788899999999999999888777776642 23445666677888888876 322 24677
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-C---Ccc-----C-CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L---SPA-----R-LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-~---~~~-----~-~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++....++|.+.|+.+|+++..+|...+|+||.+ .+.. . ... . -..|++++|+.-.++.. ||+.+
T Consensus 239 ~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~----GgFc~ 314 (467)
T KOG1358|consen 239 VEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG----GGFCA 314 (467)
T ss_pred EEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc----Cceee
Confidence 7888888999999999999999999999999998 2321 1 111 1 15799999999998775 58888
Q ss_pred cCh
Q 020548 138 GPA 140 (324)
Q Consensus 138 ~~~ 140 (324)
++.
T Consensus 315 G~~ 317 (467)
T KOG1358|consen 315 GKS 317 (467)
T ss_pred cce
Confidence 854
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-08 Score=84.06 Aligned_cols=249 Identities=13% Similarity=0.117 Sum_probs=151.6
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 90 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~ 90 (324)
+++++...+..+.... .. ++++++.++.+ |+..+.+.+ +++|.+++.+.|+.|+|...|+++|.++.-
T Consensus 172 ~iv~~~~v~~a~eK~a----~y-f~v~l~~V~~~~~~~~~D~~k~~~~i-~eNti~lv~~~~~~p~G~~e~ve~l~~l~~ 245 (491)
T KOG1383|consen 172 NIVTPQNVHAAFEKAA----RY-FEVELREVPLDEGDYRVDPGKVVRMI-DENTIMLVGSLPNFPTGEIEDVEKLADLLL 245 (491)
T ss_pred cccchHHHHHHHHHHH----hh-EEEEEEeeeccccceEecHHHHHHHh-ccceEEEEEEcCCCCccchhhHHHHHHHHH
Confidence 3555555444444433 33 78888887765 899999999 999999999999999999999999999999
Q ss_pred h-cCCEEEEcCCCCcCCCC-------ccCC---CCcEEEeCCccccccCCCeeEEEE-EcChhHH-HHHHH---hhhh--
Q 020548 91 D-KGVTVVVDNTFSPLVLS-------PARL---GADVVVHSISKFISGGADIIAGAV-CGPANLV-NSMMD---LHQG-- 152 (324)
Q Consensus 91 ~-~~~~~ivD~~~~~~~~~-------~~~~---~~d~~~~S~sK~~~~~g~r~~G~i-~~~~~~~-~~l~~---~~~~-- 152 (324)
+ +++.+.+|.+-++|... +.++ +..-+..+.||+--.+- - .||+ ..++++. .++.- +..+
T Consensus 246 e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~-G-~~~vl~r~k~~~~~q~~~~~~w~Gg~y 323 (491)
T KOG1383|consen 246 EIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPA-G-SSWVLYRNKELLPHQLFFHTDWLGGIY 323 (491)
T ss_pred HHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeec-C-cEEEEEcccccccceEEEeccccCccc
Confidence 8 99999999998777542 1222 34556678899532322 2 2666 4444432 22221 1111
Q ss_pred -hhhccCCCCCHH--HHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 153 -ALMLLGPTMNPK--VAFELS--ERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 153 -~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
+-+..++-+... ++++.+ .+-+.+.+..++..+++..+.+.+++.+. .+..+.
T Consensus 324 ~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp--------------------- 382 (491)
T KOG1383|consen 324 ASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKP--------------------- 382 (491)
T ss_pred cCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC---------------------
Confidence 112233333322 333322 23344667788889999999999998643 433222
Q ss_pred eEEEEEeC--CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 227 GLLCLDME--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 227 ~~~~~~l~--~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++|.+. ...+..++.+.|+. +|- .+. -...|.. +--...|+.+. .+=.+.
T Consensus 383 -~vs~~~~~s~~~~i~elsd~l~~---~GW---~ln----alq~P~a---------------~Hi~vt~~~~~-~~~A~~ 435 (491)
T KOG1383|consen 383 -LVSFILFGSNDVNIFELSDLLRK---KGW---ILN----ALQFPAA---------------IHICVTRVHAR-EDVADR 435 (491)
T ss_pred -cEEEEEccCCccchhhhhHHHHh---cCc---Ccc----ccCCCCc---------------eEEEEEeeecc-HHHHHH
Confidence 3455543 22344555555553 111 111 1112211 00134677776 444677
Q ss_pred HHHHHHHHHHhhhhcCC
Q 020548 305 RWSQFEKALSRMQDSGV 321 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~~~ 321 (324)
++.++.++++.+...+.
T Consensus 436 ~v~Di~~~~~el~~~p~ 452 (491)
T KOG1383|consen 436 FVADIRKVVEELKSLPE 452 (491)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 89999999998876543
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-07 Score=83.79 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=131.8
Q ss_pred CHHHHHHhhhc---CCceEEEEecCCCC-cccccC---hHHHHHHHHhcCCEEEEcCCC-C--cCC----------CCcc
Q 020548 51 DHEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN---IPELSRLAHDKGVTVVVDNTF-S--PLV----------LSPA 110 (324)
Q Consensus 51 d~~~l~~~l~~---~~~~~v~~~~~~np-tG~~~~---~~~i~~l~~~~~~~~ivD~~~-~--~~~----------~~~~ 110 (324)
|+++++++++. +++..+.++-.+|. .|++.+ ++++.++|++||+.++.|.+. . ..+ .++.
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~ 247 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIE 247 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHH
Confidence 89999999943 34444444333343 466655 678899999999999999874 1 111 1111
Q ss_pred C------CCCcEEEeCCccccccCCCeeEEEEEcChh----HHHHHHHhhh---hhhhccCCCCCHHHHHHHhcCccc--
Q 020548 111 R------LGADVVVHSISKFISGGADIIAGAVCGPAN----LVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPH-- 175 (324)
Q Consensus 111 ~------~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~----~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (324)
+ ..+|.+..|++|.++.|- ||+++++++ +.++++.... +..+. +.++.....++..++..
T Consensus 248 eI~rE~~~~aDsvt~slsKglgApv---Gg~Lag~d~~~~~l~~~~~~~~i~~EGf~tY--GGlagrd~ea~a~Gl~e~~ 322 (467)
T TIGR02617 248 QITRETYKYADMLAMSAKKDAMVPM---GGLLCFKDDSFFDVYTECRTLCVVQEGFPTY--GGLEGGAMERLAVGLYDGM 322 (467)
T ss_pred HHHHHhhccCCEEEEEcCCCCCCcc---cceEEecchhHHHHHHHHHhhcccccCCcCc--CchhHHHHHHHHhhhhhcc
Confidence 1 268999999999987764 688877654 4445444322 11111 23444444444434433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE-----EeC-CHHHHHHHHHHhhcc
Q 020548 176 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL-----DME-TEEKANRLMNYLQNY 249 (324)
Q Consensus 176 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~l~-~~~~~~~~~~~l~~~ 249 (324)
...+++......++|.+.|.+.|..+..++ |++-++-- .++ ....+..+..+|-.
T Consensus 323 ~~~yl~~ri~qv~yl~~~L~~~Gvpi~~~G------------------ghav~iDa~~~lphip~~~fpa~al~~~ly~- 383 (467)
T TIGR02617 323 NLDWLAYRINQVQYLVNGLEEIGVVCQQAG------------------GHAAFVDAGKLLPHIPADQFPAHALACELYK- 383 (467)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCcEEecC------------------ccEEEEehhhhCCCCChhhCcHHHHHHHHHH-
Confidence 234555567778999999999998665433 12211110 112 12235555555554
Q ss_pred ccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 250 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 250 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
..|+-++..|..-..- -|... .. ...+-..+|+.+-..--+.+-++.+.+++..+.++
T Consensus 384 -~~GiR~~e~G~~~~~r-d~~~~--~~--------~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 384 -VAGIRAVEIGSLLLGR-DPKTG--KQ--------LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred -HcCcceEeecceeccc-CCCCC--cc--------CCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 4565555566441110 11110 00 01113789999984334556678888888877543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-07 Score=78.64 Aligned_cols=216 Identities=11% Similarity=0.129 Sum_probs=130.1
Q ss_pred HccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEE---ecCC----CHHHHHHhhhc-CCceEEEE-ecCCCCccccc
Q 020548 10 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF---VDIS----DHEMVNSAIVQ-GRTKVLYF-ESISNPTLAVA 80 (324)
Q Consensus 10 ~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~---~~~~----d~~~l~~~l~~-~~~~~v~~-~~~~nptG~~~ 80 (324)
+..-|+..|.+++|+|.++...++ ..|..+.+ ++.. |.+.+.+.+.+ +.-..|++ ...|||||.-+
T Consensus 141 ~~f~~~~~I~ip~PTWgNh~~if~-----~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDP 215 (427)
T KOG1411|consen 141 ARFYPSRDIYIPDPTWGNHKNIFK-----DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDP 215 (427)
T ss_pred HhhccccceeecCCcccccCcccc-----ccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCc
Confidence 334468999999999999888774 25665533 3332 66666665522 12234444 33899999875
Q ss_pred ---ChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC------------CCcEEEeCCccccccCCCeeEEEE---EcChhH
Q 020548 81 ---NIPELSRLAHDKGVTVVVDNTFSPLVLSPARL------------GADVVVHSISKFISGGADIIAGAV---CGPANL 142 (324)
Q Consensus 81 ---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~------------~~d~~~~S~sK~~~~~g~r~~G~i---~~~~~~ 142 (324)
..++|.++.++.+.+-+.|.+|.+|.....+. +..+++.|+.|.+|.-|-|+ |.+ +.+++.
T Consensus 216 t~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERv-Ga~svvc~~ad~ 294 (427)
T KOG1411|consen 216 TKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERV-GALSVVCKDADE 294 (427)
T ss_pred cHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcc-ceeEEEecCHHH
Confidence 46688888999999999999997775322211 34588999999999999997 765 455555
Q ss_pred HHHHHHhhhhhhh---ccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 143 VNSMMDLHQGALM---LLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 143 ~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
..++..-..-..+ +..+...+..+...+... ..+.....|+...++.+.+.|++.+... ++
T Consensus 295 A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~---------~W 365 (427)
T KOG1411|consen 295 AKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPG---------NW 365 (427)
T ss_pred HHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCc---------cH
Confidence 5554432210111 222222222333333322 2233455667777888888887765311 23
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.++.++ =++|+|.--+++..+.+.++..
T Consensus 366 ~hI~~Q-------IGMF~fTgl~peQv~~l~ke~~ 393 (427)
T KOG1411|consen 366 SHITKQ-------IGMFCFTGLNPEQVDWLTKEYH 393 (427)
T ss_pred HHHHHh-------hheeeecCCCHHHHHHHHhhhe
Confidence 333332 3377776556666666655543
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-07 Score=87.21 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=118.0
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhc---C--CceEEEEecCCCCcccccChH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQ---G--RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~---~--~~~~v~~~~~~nptG~~~~~~ 83 (324)
+++++...|.+....+. ++|+ .++.++.+ |+++|++.+++ . .+-+|+.+..+..+|.+.|++
T Consensus 224 ~vl~s~~aHyS~~KAa~-----ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~ 298 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAAD-----IIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGID 298 (608)
T ss_pred EEEECCCccHHHHHHHH-----HcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHH
Confidence 68888888999888873 3565 35566553 89999888732 1 244566677899999999999
Q ss_pred HHHHHH---HhcCC--EEEEcCCCCcCC----CC------cc-----------------------------C-CCCcEEE
Q 020548 84 ELSRLA---HDKGV--TVVVDNTFSPLV----LS------PA-----------------------------R-LGADVVV 118 (324)
Q Consensus 84 ~i~~l~---~~~~~--~~ivD~~~~~~~----~~------~~-----------------------------~-~~~d~~~ 118 (324)
+|+++| +++|+ +++||++|+++. .+ |. . ..+|-++
T Consensus 299 eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSIt 378 (608)
T TIGR03811 299 KIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVT 378 (608)
T ss_pred HHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEE
Confidence 999998 66887 699999997642 11 00 0 1589999
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh-------------hhccCCCCC--HHHHHHHhcC----cccHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------------LMLLGPTMN--PKVAFELSER----IPHLGLR 179 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~----~~~~~~~ 179 (324)
.++||++..|-.. +++++.++.+.+.+.....+. ....+.-+. ....+..++. ...+...
T Consensus 379 vDpHK~g~~Py~~-G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~ 457 (608)
T TIGR03811 379 IDPHKMGYIPYSA-GGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKL 457 (608)
T ss_pred eCcccccccCCCe-EEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998776554 455677766545443211100 011222233 3444444433 2346788
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 020548 180 MKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 180 ~~~~~~~~~~l~~~L~~~~~ 199 (324)
+++..+.++++.+.|++.++
T Consensus 458 i~~~i~~A~~~~~~L~~~~~ 477 (608)
T TIGR03811 458 IGASIEGAHRFYDFLNNLEF 477 (608)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 88889999999999998643
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-06 Score=74.00 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=100.6
Q ss_pred HHHHHHhhhc-----CCceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCC---------CCccCCC
Q 020548 52 HEMVNSAIVQ-----GRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLV---------LSPARLG 113 (324)
Q Consensus 52 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~---------~~~~~~~ 113 (324)
++++++.+.+ ..+.++++++.+...|.-. -.+.+.+++++||+.+|+||+|.+.. +..++..
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 5555555532 3578999999999988773 27899999999999999999993332 1123336
Q ss_pred CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q 020548 114 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (324)
+|+++ |||-|-. |||.... ++... .+++. ..++.|-..-.+.+....+.+. -+...++...--+.|...
T Consensus 335 pD~vT--FSKK~q~-----gGffh~~-~frpn-~pYri-fNTWmGdP~k~lll~~vv~~I~-~~~Ll~n~~~vG~~l~~g 403 (484)
T KOG1405|consen 335 PDVVT--FSKKFQT-----GGFFHDE-EFRPN-EPYRI-FNTWMGDPSKNLLLEEVVQEIK-REDLLNNVAHVGKALLKG 403 (484)
T ss_pred cccee--hhhhhhc-----CccccCc-ccCCC-chHHH-hhhhcCChHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 88888 8888744 3755433 22211 01111 1112222211111111111111 112222233333444444
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 262 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~ 262 (324)
|.++.. .+|+.-+ ...|+|.|+.+.+++......|+..++. .++..||.
T Consensus 404 L~~Lq~--~~p~~~~------------~~RGrGTF~a~d~ps~~~Rdk~i~~~~~------nGv~~GGC 452 (484)
T KOG1405|consen 404 LLELQA--KYPGKIN------------NLRGRGTFIAWDCPSGSIRDKLILIARL------NGVNLGGC 452 (484)
T ss_pred HHHHHH--hCchhhh------------cccccceEEEEeCCChHHHHHHHHHHHH------cCceeccc
Confidence 444321 1333111 1236899999999988888889888886 45566654
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-05 Score=68.44 Aligned_cols=233 Identities=15% Similarity=0.109 Sum_probs=126.9
Q ss_pred CHHHHHHhhhc---CCceEEEEec-CCCCccccc---ChHHHHHHHHhcCCEEEEcCCC-C---cCCC--Cc--cCC---
Q 020548 51 DHEMVNSAIVQ---GRTKVLYFES-ISNPTLAVA---NIPELSRLAHDKGVTVVVDNTF-S---PLVL--SP--ARL--- 112 (324)
Q Consensus 51 d~~~l~~~l~~---~~~~~v~~~~-~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~-~---~~~~--~~--~~~--- 112 (324)
|++.|++.+.. +++..|+++- .|.-.|+.. .++++.++|++|++.++.|.+. . .|.. .+ .++
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~ 249 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIE 249 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHH
Confidence 88999998832 4677777754 445556654 5789999999999999999884 2 1211 11 000
Q ss_pred --------CCcEEEeCCccccccCCCeeEEEEEcChh----HHHHHHHhhh-hhhhccCCCCCHHHHHHHhcCccc-H-H
Q 020548 113 --------GADVVVHSISKFISGGADIIAGAVCGPAN----LVNSMMDLHQ-GALMLLGPTMNPKVAFELSERIPH-L-G 177 (324)
Q Consensus 113 --------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~----~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 177 (324)
-+|-.+.|.-|---. .+||+++.+.+ +...++...- ..+...-+.++......+..++.. + .
T Consensus 250 ~IarEm~sYaD~~~mS~KKD~lv---nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~ 326 (471)
T COG3033 250 EIAREMYSYADGCTMSAKKDGLV---NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNF 326 (471)
T ss_pred HHHHHHHhhhhhheeecccccee---ccccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCc
Confidence 478888899886423 23799976554 6666665432 001111122222222222223322 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe----C----CHHHHHHHHHHhhcc
Q 020548 178 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM----E----TEEKANRLMNYLQNY 249 (324)
Q Consensus 178 ~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l----~----~~~~~~~~~~~l~~~ 249 (324)
.+++...+..++|.+.|.+.|.++..|. +|.-+-+.. + +...++.|..+|-
T Consensus 327 ~yl~~Rv~Qv~YL~~~l~~~GVpi~~pa-------------------GGHavfvda~~~lphip~eqFpaqala~ely-- 385 (471)
T COG3033 327 DYLAHRVAQVQYLADGLEEAGVPIVQPA-------------------GGHAVFVDAGKFLPHIPAEQFPAQALACELY-- 385 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeEecC-------------------CCceEEeehhhhcCCCChhhCcHHHHHHHHH--
Confidence 3445556777899999999998766665 222222222 2 1223445544443
Q ss_pred ccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 250 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 250 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.|+-++.+|.+.-. ...... .....+.+.+|+.+-...-+.+-++.+.+++.++-+
T Consensus 386 ~e~GiRavElG~~~~~--rd~ktg---------~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 386 KEAGIRAVELGSFSLG--RDPKTG---------KQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred HHhCeeeeeeeceecc--cCCCcc---------ccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence 3566666666644111 000000 001122378999998322344455666666666643
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=74.18 Aligned_cols=175 Identities=9% Similarity=0.042 Sum_probs=114.2
Q ss_pred EEcCCCchhHHHHHhhhcCcccc---eeEEEecCC-----CHHHHHHhhhc--CC---ceEEEEecCCCCcccccChHHH
Q 020548 19 VAARTLYGGTHALLTHFFPRACN---ITTTFVDIS-----DHEMVNSAIVQ--GR---TKVLYFESISNPTLAVANIPEL 85 (324)
Q Consensus 19 l~~~p~y~~~~~~~~~~~~~~~g---~~~~~~~~~-----d~~~l~~~l~~--~~---~~~v~~~~~~nptG~~~~~~~i 85 (324)
-.++.+|.+...... .+| -.++.++.+ ++++|++.+.. .+ +-+|-.+......|...|+..|
T Consensus 201 FtSeesHYSi~kaAa-----~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~i 275 (510)
T KOG0629|consen 201 FTSEESHYSIKKAAA-----FLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGI 275 (510)
T ss_pred EecccchhhHHHHHH-----HhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHH
Confidence 344466776666553 133 345555544 78899887732 22 4556666678888999999999
Q ss_pred HHHHHhcCCEEEEcCCCCc-CCCCccC---C----CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----
Q 020548 86 SRLAHDKGVTVVVDNTFSP-LVLSPAR---L----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----- 152 (324)
Q Consensus 86 ~~l~~~~~~~~ivD~~~~~-~~~~~~~---~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~----- 152 (324)
+++|++|+.++.||+++++ +..+... + .++-+..+.||++|.|-.+. .+++....++..+......
T Consensus 276 adiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCs-a~l~r~~gll~~Cn~~~A~YLFq~ 354 (510)
T KOG0629|consen 276 ADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCS-AFLTREEGLLQRCNQMSAIYLFQQ 354 (510)
T ss_pred HHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhh-HHHHHHHHHHHhhcccchhhhhcc
Confidence 9999999999999999944 5433211 1 47889999999998864442 3334444566655432211
Q ss_pred ------------hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 153 ------------ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 153 ------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
-...+|-.....-.|+... +...++..+.+..++++++.+.+++.+.
T Consensus 355 dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~ 415 (510)
T KOG0629|consen 355 DKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG 415 (510)
T ss_pred CceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1112333333344555443 3455888899999999999999999865
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.3e-06 Score=67.97 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=129.3
Q ss_pred HHHHHhhhc-----CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC--------CccCCCCc
Q 020548 53 EMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL--------SPARLGAD 115 (324)
Q Consensus 53 ~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~--------~~~~~~~d 115 (324)
+.+++.+++ .++++.+-++.++=.|++.| .+.+++..|.+|.+.|.||++.+|.. ....+-.|
T Consensus 194 d~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPD 273 (452)
T KOG1403|consen 194 DPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPD 273 (452)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccc
Confidence 455555532 34667777888888888865 56888889999999999999977642 11223467
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
+++ +.|-+|- |-++ +.++..+++.+.+......+-...|++|...+..++....-.-++..+...+.-++|...|+
T Consensus 274 IVt--mgKpmGN-GhPV-a~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~ 349 (452)
T KOG1403|consen 274 IVT--MGKPMGN-GHPV-AAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLR 349 (452)
T ss_pred hhe--ecccCCC-CCee-eEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 777 9999965 8887 99999999888887633323235566666555544332221122222333444445555555
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceec
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~ 267 (324)
++..+...-+ +..|-|-|+.+++- +...+...+.+++. ..+++- |..
T Consensus 350 ~~k~kh~~IG---------------DvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke--~y~VLl-saD------- 404 (452)
T KOG1403|consen 350 RLKQKHECIG---------------DVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKE--LYRVLL-SAD------- 404 (452)
T ss_pred HHhhhcccee---------------ccccceEEEeeeeecccccCCCcHHHHHHHHHHHHH--hhhEEE-ecC-------
Confidence 5433211111 33467888888764 23345556666664 222211 111
Q ss_pred cccccccCCCCHHHHHhcCCCCCeEE----EEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 268 CSGSSTSSELNAEEKALAGISAGLVR----MSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~iR----~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|...+.+. ++|. .+|..+.+..|+++|..+.+
T Consensus 405 ------------------GPh~NilKiKPPmCFn-eena~e~v~~ld~iLT~mee 440 (452)
T KOG1403|consen 405 ------------------GPHRNILKIKPPMCFN-EENADEFVLGLDEILTVMEE 440 (452)
T ss_pred ------------------CCCCceeecCCCcccC-hhhHHHHHHHHHHHHHHHHH
Confidence 11123333 3556 77888888899988876654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-05 Score=68.74 Aligned_cols=206 Identities=15% Similarity=0.195 Sum_probs=116.5
Q ss_pred EEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc----CCceEEEEecCCCCcccc--cChHHHH
Q 020548 18 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ----GRTKVLYFESISNPTLAV--ANIPELS 86 (324)
Q Consensus 18 vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~----~~~~~v~~~~~~nptG~~--~~~~~i~ 86 (324)
+.+++..+.+....+ .+.+++++.++.+ +.+.|.+++++ +-+-.+++.+.. .||.+ .++.+|.
T Consensus 185 ~Y~SDqahssveka~-----~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-TT~~ca~D~l~elg 258 (511)
T KOG0628|consen 185 AYCSDQAHSSVEKAC-----LIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-TTSSCAFDELEELG 258 (511)
T ss_pred EEecCcccchHHHhH-----hhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-CccccccccHHHhc
Confidence 556667777777766 3467788777665 56777777733 234455555442 34555 4799999
Q ss_pred HHHHhcCCEEEEcCCCC-cCCCCcc-C---C---CCcEEEeCCccccccCCCeeEEEEEcChhHHH-----HHH------
Q 020548 87 RLAHDKGVTVVVDNTFS-PLVLSPA-R---L---GADVVVHSISKFISGGADIIAGAVCGPANLVN-----SMM------ 147 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~-~~~~~~~-~---~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-----~l~------ 147 (324)
.+|+++|+++.||++|+ ..+..|. . . .+|-+.+..|||+...-.+..=|+-....+.. .+.
T Consensus 259 ~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~ 338 (511)
T KOG0628|consen 259 PVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ 338 (511)
T ss_pred chhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhh
Confidence 99999999999999994 3433321 1 1 36777888899876654443122221111111 111
Q ss_pred Hh-hhh--hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhcc
Q 020548 148 DL-HQG--ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 148 ~~-~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.. ..+ +...-+--...+-.+..++ +.+.++++++++.+.++.+-..+.+-+ +++..|.
T Consensus 339 ~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~---------------- 402 (511)
T KOG0628|consen 339 GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR---------------- 402 (511)
T ss_pred ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc----------------
Confidence 00 000 0001111122333444333 234456666666666666665555433 2443333
Q ss_pred CCCcceEEEEEeC-CHHHHHHHHHHhhc
Q 020548 222 EYGFGGLLCLDME-TEEKANRLMNYLQN 248 (324)
Q Consensus 222 ~~~~g~~~~~~l~-~~~~~~~~~~~l~~ 248 (324)
.=+++.|+++ +.+..+.+++++..
T Consensus 403 ---~lgLvcFRlk~~N~~ne~Ll~~in~ 427 (511)
T KOG0628|consen 403 ---ILGLVCFRLKGDNEINEALLNRLNS 427 (511)
T ss_pred ---ccceeEEeecCCcHHHHHHHHHHHh
Confidence 2348899998 45667888888884
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-05 Score=70.49 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=113.9
Q ss_pred HHHHcc-CCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhh--cCCceEEEEecCCC
Q 020548 7 VLMQLC-SSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIV--QGRTKVLYFESISN 74 (324)
Q Consensus 7 ~~~~~~-~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~--~~~~~~v~~~~~~n 74 (324)
+++++. .+|+ ..+++...|+..+.... ..|.+++.+..+ |..+|.+... +++.+++.++.|+.
T Consensus 617 ~IRaY~~~kge~hRnvClIPvSAHGTNPASA~-----MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST 691 (1001)
T KOG2040|consen 617 VIRAYLESKGEGHRNVCLIPVSAHGTNPASAA-----MAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST 691 (1001)
T ss_pred HHHHHHHhccCCcceeEEEeecccCCChhhHH-----hcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc
Confidence 455553 2342 46777777877776662 378888888765 6777776652 35678999999976
Q ss_pred Ccccc-cChHHHHHHHHhcCCEEEEcCCC--CcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 75 PTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 75 ptG~~-~~~~~i~~l~~~~~~~~ivD~~~--~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
.|.. ..++++.++.|++|.-+..|.+- +.. ...|.+.|.|+.=--+||.|+.|-+- ||=-.+|-.+.+.+.+..
T Consensus 692 -~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGG-GGPg~gPIgVK~HLapfL 769 (1001)
T KOG2040|consen 692 -HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGG-GGPGMGPIGVKKHLAPFL 769 (1001)
T ss_pred -cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccceeecccceeeecCCC-CCCCCCccchhhhccccC
Confidence 4555 57999999999999999999985 222 24688889999998999999765322 222223322233332221
Q ss_pred hh------------------hhhccCCC-CCHH-HHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 151 QG------------------ALMLLGPT-MNPK-VAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 151 ~~------------------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+. +...+|+. ..+. -++..+-+...+....+...-|++++..+|+.+
T Consensus 770 P~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h 836 (1001)
T KOG2040|consen 770 PSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH 836 (1001)
T ss_pred CCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc
Confidence 10 01112211 1111 122223344445555555677889999999886
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=71.07 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=86.5
Q ss_pred HHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhc--CCceEEEEecC
Q 020548 5 SSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQ--GRTKVLYFESI 72 (324)
Q Consensus 5 ~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~--~~~~~v~~~~~ 72 (324)
.+.+.++. ..++.|+.+.-.+.+....+. . .|.+++.++.. |.+.+++.+++ ....+.+++++
T Consensus 89 ~l~l~~l~~r~~a~~Viw~ridqkSc~kai~----~-AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvlttt 163 (389)
T PF05889_consen 89 TLCLLALRMRPKAKYVIWPRIDQKSCFKAIE----R-AGLEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTT 163 (389)
T ss_dssp HHHHHHHHHHCT--EEEEEEEETHHHHHHHH----H-TT-EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred HHHHHHHhcccCCceEEEeeccccchHHHHH----h-cCCeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEec
Confidence 34444442 357899999977766665553 2 67777666631 67777777732 34567777887
Q ss_pred CCCcccccC-hHHHHHHHHhcCCEEEEcCCCCcCC-------CCccCC-CCcEEEeCCccccccCCCeeEEEEEc-ChhH
Q 020548 73 SNPTLAVAN-IPELSRLAHDKGVTVVVDNTFSPLV-------LSPARL-GADVVVHSISKFISGGADIIAGAVCG-PANL 142 (324)
Q Consensus 73 ~nptG~~~~-~~~i~~l~~~~~~~~ivD~~~~~~~-------~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~ 142 (324)
+--.+...| +++|+++|++||++.++-+||+--. ...... -.|+++.|+-|.|-.|-+ ++.+.+ ++..
T Consensus 164 scfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvG--gai~As~~~~~ 241 (389)
T PF05889_consen 164 SCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVG--GAIMASFDPSG 241 (389)
T ss_dssp STTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESS--HEEEEESSHHH
T ss_pred CccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCC--CcEEEecCHHH
Confidence 777788887 9999999999999999999983211 011122 368999999998755431 244443 4567
Q ss_pred HHHHHHhhh
Q 020548 143 VNSMMDLHQ 151 (324)
Q Consensus 143 ~~~l~~~~~ 151 (324)
+..+.....
T Consensus 242 i~~vs~~Yp 250 (389)
T PF05889_consen 242 ILAVSKEYP 250 (389)
T ss_dssp HHHHHHTSH
T ss_pred HHHHHHHhh
Confidence 777766543
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00023 Score=61.46 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=122.7
Q ss_pred cCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
.++...|++++-...+|.-.+ +.-.... +.++|+|.+ +.+.-.+.+. ..|++.++..|.+|+.| + ++++.+
T Consensus 142 ~~~~ayv~~~~NeTi~Gv~v~--~~p~~~~--~~~~v~D~S-S~ilsr~iDvsk~dviyagaQKnlGpaG--l-tvvIvr 213 (365)
T COG1932 142 SDNDAYVHFCWNETISGVEVP--ELPDIGS--DGLLVADAS-SAILSRPIDVSKYDVIYAGAQKNLGPAG--L-TVVIVR 213 (365)
T ss_pred CCCccEEEEecCCcccceEcc--CCCCCCC--CceEEEecc-cHHhcCCCChhHcceEEEehhhccCccc--e-EEEEEc
Confidence 334444666654445555543 2122222 288999987 4554455555 57899999999998877 4 888889
Q ss_pred hhHHHHHHHh-hhh-----hhh---ccCCCCCHHHHHHHhcC------cccHHHHHHHHHHHHHHHHHHHHhCCCc--ee
Q 020548 140 ANLVNSMMDL-HQG-----ALM---LLGPTMNPKVAFELSER------IPHLGLRMKEHCHRALIFARRMKKLGLK--VL 202 (324)
Q Consensus 140 ~~~~~~l~~~-~~~-----~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~ 202 (324)
+++++++... .+. ... ..-++|+..+.+..... ...++...+|..++++.|.+++.+.++- ..
T Consensus 214 ~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v 293 (365)
T COG1932 214 PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLV 293 (365)
T ss_pred HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 9988888664 110 001 11234444433332222 2336677788899999999999998762 11
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.|. + .+-.-+.|.+.+.+-...|+..+.. .|. . ..-| |-
T Consensus 294 ~~~---~--------------RS~mnV~f~~~~~~ld~~fv~eae~---~gl-~-~lkG------hr------------- 332 (365)
T COG1932 294 AKA---N--------------RSRMNVTFTLVDAELDKGFVAEAEA---AGL-I-YLKG------HR------------- 332 (365)
T ss_pred chh---h--------------ccceeEEEEcCcHHHHHHHHHHHHH---cCC-c-eecc------cc-------------
Confidence 122 1 1233567888776667788888774 222 1 1111 00
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
. .+-+|+|++ .--.-+.++.|.+.++.+.+
T Consensus 333 ----~-vgGmRasiy-nA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 333 ----S-VGGLRASIY-NAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred ----C-CCceeeeee-cCCCHHHHHHHHHHHHHHHH
Confidence 0 234999999 76666778888888877754
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.002 Score=59.64 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=77.9
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
..++.+.++...+|+.+.+.++.-..- +|+++.-. |+++... . ..++..|++..|.. -|.+.|..++++.+++
T Consensus 202 ~~krkk~vvd~~~hpqtlsV~~TRa~~-~~i~v~~~---~~~~~~~-s-~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~ 274 (1001)
T KOG2040|consen 202 INKRKKFVVDSNCHPQTLSVVKTRAKG-FGIKVVVS---DIKEADY-S-SKDVSGVLVQYPDT-EGSVLDFDELVELAHA 274 (1001)
T ss_pred hcccceEEecCCCCcchhhhhhccccc-cceeEEec---CHHHhhc-c-ccceeEEEEEcCCC-CCcccCHHHHHHHhhc
Confidence 345678999999999999999755544 67775443 4443322 2 45688999998855 6999999999999999
Q ss_pred cCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccc
Q 020548 92 KGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF 124 (324)
Q Consensus 92 ~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~ 124 (324)
.|.++++---. ..+...|.++|+|+.++|....
T Consensus 275 ~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF 309 (1001)
T KOG2040|consen 275 NGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF 309 (1001)
T ss_pred cCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence 99887653222 2234578899999999987763
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0028 Score=53.49 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=90.8
Q ss_pred HHHHHHHccCCC---CEEEEcCCCchhHHHHHhhhcCcccceeE----EEecCC------CHHHHHHhhh--cCCceEEE
Q 020548 4 ISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS------DHEMVNSAIV--QGRTKVLY 68 (324)
Q Consensus 4 i~~~~~~~~~~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~----~~~~~~------d~~~l~~~l~--~~~~~~v~ 68 (324)
+..++.++.+|- -+|+...-.|++-.-++...+.. .|+.+ +.+.+. ..+++...+. .+.+++|+
T Consensus 141 lh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~l-hG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~ 219 (465)
T KOG3846|consen 141 LHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKL-HGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVC 219 (465)
T ss_pred HHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhh-cCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEE
Confidence 344555666654 36888887777655555433332 45543 222221 3455555552 24578899
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++.++.-||+..++.+|.+.-+..|+++=.|-++ +......-++|+|+.+....|++..+.+.+||..+-.+
T Consensus 220 fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 220 FSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEK 293 (465)
T ss_pred eecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehh
Confidence 9999999999999999997777789999999886 33333344679999999999988765555556665443
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.066 Score=44.46 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=84.6
Q ss_pred cceeEEEecC--------CCHHHHHHhhhcCCceEEEEec--CCCCcccc-cChHHHHHHHHhcCCEEEEcCCCCcCCC-
Q 020548 40 CNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFES--ISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVL- 107 (324)
Q Consensus 40 ~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~--~~nptG~~-~~~~~i~~l~~~~~~~~ivD~~~~~~~~- 107 (324)
.|.+++.+.. .|++.+++.++.-....+++.+ .+--.-.. ..+++|+.+|..|+++-+|.++|+--..
T Consensus 123 agfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee 202 (432)
T KOG3843|consen 123 AGFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEE 202 (432)
T ss_pred cCCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHH
Confidence 5666555443 1778888877443444333221 11111122 2489999999999999999999843211
Q ss_pred ------CccCC-CCcEEEeCCccccccCCCeeEEEEEc--ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHh-cCcccHH
Q 020548 108 ------SPARL-GADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQGALMLLGPTMNPKVAFELS-ERIPHLG 177 (324)
Q Consensus 108 ------~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 177 (324)
...+. ..|.++.|+.|.|-.|- ||.+++ +..++..+.+..++ ....+|+......++ .+...+.
T Consensus 203 ~i~~iaa~~~~grida~vqsldknf~vpv---ggaiia~fk~n~iq~iak~ypg---rasa~ps~dllitll~~gqn~f~ 276 (432)
T KOG3843|consen 203 CIHKIAAAAECGRIDAFVQSLDKNFMVPV---GGAIIAAFKDNFIQEIAKMYPG---RASASPSLDLLITLLSLGQNAFK 276 (432)
T ss_pred HHHHHHHHhhhccHHHHHHHhhhcceeec---chhHhhHhHHHHHHHHHHhCCC---ccccCccHHHHHHHHHhchhHHH
Confidence 11122 36899999999996553 566643 45677777665443 334445543333332 2333333
Q ss_pred HHHHHH----HHHHHHHHHHHHhCCC
Q 020548 178 LRMKEH----CHRALIFARRMKKLGL 199 (324)
Q Consensus 178 ~~~~~~----~~~~~~l~~~L~~~~~ 199 (324)
+...+. ...++++...-+..+.
T Consensus 277 e~~~eqkemf~~l~~ki~~~ae~~~e 302 (432)
T KOG3843|consen 277 ELFGEQKEMFLKLRNKIIKFAEAIGE 302 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333332 4444445444444443
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.7 Score=36.90 Aligned_cols=243 Identities=12% Similarity=0.056 Sum_probs=123.9
Q ss_pred CEEEEcCCCchhHHHHHhhhcCccccee-EEEe--------cCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNIT-TTFV--------DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~--------~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
|.|+.-.+.-.++.++-+ +|.. .+.. ..+|.+.++. +++.+.|+.|.--...|.-. .++-
T Consensus 101 dYiVTGsWS~KA~~EAkk------~~~~~~V~~~~k~y~ygkvPd~~~w~~---~~da~yvyyCaNETVHGVEf--~~~P 169 (370)
T KOG2790|consen 101 DYVVTGSWSAKAAEEAKK------YGTPNIVIPKLKSYTYGKVPDPSTWEL---NPDASYVYYCANETVHGVEF--DFIP 169 (370)
T ss_pred ceEEeccccHHHHHHHHh------hCCceEEeccccccccCcCCChhhccc---CCCccEEEEecCceeeceec--CCCC
Confidence 677777776666665542 3322 1111 2236565543 45666777665333333332 2221
Q ss_pred HHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----------hh
Q 020548 87 RLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-----------AL 154 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-----------~~ 154 (324)
+-.-+|+++++|-. +.|...|.+. ..+++.....|..|+.|.. .++.+++++.......+- +.
T Consensus 170 -~~~~~~~vlVaDmS-SnflSrpvDvsk~gvi~aGAQKN~G~aG~T---vvivr~dllg~~~~~tP~v~dyk~~~~NnSl 244 (370)
T KOG2790|consen 170 -VNDPKGAVLVADMS-SNFLSRPVDVSKFGVIFAGAQKNVGPAGVT---VVIVRKDLLGNALDITPSVLDYKIMDKNNSL 244 (370)
T ss_pred -CCCCCCceEEEecc-cchhcCCccchhcceEEeccccccCccccE---EEEEehhhhcccccCCccccceeeecccccc
Confidence 22346889999976 6777677766 4568888899999887633 344455665544332210 11
Q ss_pred hccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 155 MLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
....+........+.+.. ...+...-+...+..+.+.+.+.+...-+..|-.+... +-.-+.|
T Consensus 245 yNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~R--------------S~MNV~F 310 (370)
T KOG2790|consen 245 YNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVR--------------SRMNVPF 310 (370)
T ss_pred ccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhh--------------hhcccce
Confidence 111111111122222211 12244444445778888999999873322234322221 1123567
Q ss_pred EeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHH
Q 020548 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 311 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~ 311 (324)
++...+...+|++.... . .-+++-|..+ =+-||.|+= .--.-+..+.|.+
T Consensus 311 ri~~d~Le~eFLkeA~~---~--~mv~LKGhRS------------------------VGGiRASlY-NAisv~~~q~L~~ 360 (370)
T KOG2790|consen 311 RIEKDELEAEFLKEAAK---E--HMVQLKGHRS------------------------VGGIRASLY-NAISVEEVQKLAA 360 (370)
T ss_pred eecchHHHHHHHHHHHH---h--hhhccccccc------------------------cccchhhhh-ccccHHHHHHHHH
Confidence 77755556667666442 1 1222222211 145888874 3334445667777
Q ss_pred HHHhhhh
Q 020548 312 ALSRMQD 318 (324)
Q Consensus 312 ~l~~~~~ 318 (324)
.++.+.+
T Consensus 361 ~m~~F~k 367 (370)
T KOG2790|consen 361 FMKEFQK 367 (370)
T ss_pred HHHHHHH
Confidence 7766654
|
|
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=82.70 E-value=7.2 Score=28.40 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=50.2
Q ss_pred HHHHHhhhcCcccceeEEEecCC-CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhc--CCEEEEcCCC
Q 020548 28 THALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF 102 (324)
Q Consensus 28 ~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~ 102 (324)
-...+..++.+ .|.++..++.+ +.+++.+.+.+.++++|.++... +.......++++..++. ++.+++=..+
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 33444455555 69999888776 56888887767889999987642 33445567888887776 7888887765
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.8 Score=41.37 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=34.5
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL 107 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~ 107 (324)
..=.|++..|...+++++++.||+.|+-||+|-|+.+|..
T Consensus 202 g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 202 GYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred eeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 3335788889999999999999999999999999977753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 324 | ||||
| 3mkj_A | 398 | Methionine Gamma-Lyase From Citrobacter Freundii Wi | 5e-47 | ||
| 3jwa_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 4e-46 | ||
| 3jw9_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 5e-46 | ||
| 2rfv_A | 398 | High Resolution Structure Of L-Methionine Gamma-Lya | 9e-46 | ||
| 1y4i_A | 398 | Crystal Structure Of Citrobacter Freundii L-Methion | 1e-45 | ||
| 1pg8_A | 398 | Crystal Structure Of L-Methionine Alpha-, Gamma-Lya | 1e-38 | ||
| 1e5e_A | 404 | Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin | 4e-38 | ||
| 3vk2_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 5e-38 | ||
| 1gc0_A | 398 | Crystal Structure Of The Pyridoxal-5'-Phosphate Dep | 6e-38 | ||
| 1pff_A | 331 | Crystal Structure Of Homocysteine Alpha-, Gamma-Lya | 1e-37 | ||
| 3aej_A | 389 | Reaction Intermediate Structure Of Entamoeba Histol | 1e-36 | ||
| 3acz_A | 389 | Crystal Structure Of Entamoeba Histolytica Methioni | 7e-36 | ||
| 3e6g_A | 400 | Crystal Structure Of Xometc, A Cystathionine C-Lyas | 2e-35 | ||
| 1qgn_A | 445 | Cystathionine Gamma-Synthase From Nicotiana Tabacum | 1e-32 | ||
| 3qhx_A | 392 | Crystal Structure Of Cystathionine Gamma-Synthase M | 6e-27 | ||
| 1cs1_A | 386 | Cystathionine Gamma-Synthase (Cgs) From Escherichia | 1e-26 | ||
| 1ibj_A | 464 | Crystal Structure Of Cystathionine Beta-Lyase From | 3e-24 | ||
| 1n8p_A | 393 | Crystal Structure Of Cystathionine Gamma-lyase From | 3e-24 | ||
| 2nmp_A | 403 | Crystal Structure Of Human Cystathionine Gamma Lyas | 4e-24 | ||
| 3elp_B | 410 | Structure Of Cystationine Gamma Lyase Length = 410 | 5e-24 | ||
| 3ri6_A | 430 | A Novel Mechanism Of Sulfur Transfer Catalyzed By O | 1e-22 | ||
| 3ndn_A | 414 | Crystal Structure Of O-Succinylhomoserine Sulfhydry | 3e-22 | ||
| 2cb1_A | 412 | Crystal Structure Of O-Actetyl Homoserine Sulfhydry | 1e-21 | ||
| 2ctz_A | 421 | Crystal Structure Of O-Acetyl Homoserine Sulfhydryl | 2e-20 | ||
| 1cl2_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 2e-14 | ||
| 2fq6_A | 415 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 2e-14 | ||
| 1cl1_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 7e-14 |
| >pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398 | Back alignment and structure |
|
| >pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398 | Back alignment and structure |
|
| >pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398 | Back alignment and structure |
|
| >pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398 | Back alignment and structure |
|
| >pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404 | Back alignment and structure |
|
| >pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398 | Back alignment and structure |
|
| >pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398 | Back alignment and structure |
|
| >pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389 | Back alignment and structure |
|
| >pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389 | Back alignment and structure |
|
| >pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400 | Back alignment and structure |
|
| >pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445 | Back alignment and structure |
|
| >pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392 | Back alignment and structure |
|
| >pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386 | Back alignment and structure |
|
| >pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464 | Back alignment and structure |
|
| >pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393 | Back alignment and structure |
|
| >pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403 | Back alignment and structure |
|
| >pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410 | Back alignment and structure |
|
| >pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430 | Back alignment and structure |
|
| >pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414 | Back alignment and structure |
|
| >pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412 | Back alignment and structure |
|
| >pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421 | Back alignment and structure |
|
| >pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395 | Back alignment and structure |
|
| >pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415 | Back alignment and structure |
|
| >pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 6e-90
Identities = 92/301 (30%), Positives = 151/301 (50%), Gaps = 16/301 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M A + +L+ L +GGH+V Y T + P+ IT T +D +D + A+
Sbjct: 139 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVIDPADVGALELALN 197
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
Q + + + ES +NP L +I +S+L H+KG V +D TF +PL LGAD+V+H
Sbjct: 198 QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLH 257
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KF+ G D++AG + GP LV+ + +LH LG +NP A+ + + L LR
Sbjct: 258 SATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI----LGGALNPNAAYLIIRGMKTLHLR 313
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
+++ AL A ++ V YPGL+ HP H + K GFGG + +++
Sbjct: 314 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDL 370
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
+ ++ L+ +A S G E+++ + +L+ ++A GI LVR S
Sbjct: 371 LTTAKFVDALKIPY----IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSF 426
Query: 297 G 297
G
Sbjct: 427 G 427
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 4e-88
Identities = 104/300 (34%), Positives = 158/300 (52%), Gaps = 15/300 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AISS + G H++A TLYG T +L TH+ PR I +D SD E V +A
Sbjct: 84 MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW- 141
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK++Y ES +NPT V++I ++ + H++G +VVD TF SP L P LGAD+ +H
Sbjct: 142 KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALH 201
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S+SK+I+G D+I G + + ++ G M P AF + + L +R
Sbjct: 202 SVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD---AGSLMAPMDAFLCARGMKTLPIR 258
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
M+ H L A+ +++ KV +PGLE P H++ K G+G +M++ E
Sbjct: 259 MQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFE 315
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
A +LM +L+ +AVSLG +TL+ S T + + GI+ LVR+SVG
Sbjct: 316 AAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG 371
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 5e-88
Identities = 84/306 (27%), Positives = 152/306 (49%), Gaps = 22/306 (7%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+ + L L +G +VAAR+L+G + + PR + T FVD D A+
Sbjct: 106 MAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFVDGDDLSQWERAL- 163
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+ ++FE+ SNP ++ +I ++ LAH G VV+DN F +PL+ LG DVVV+
Sbjct: 164 SVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVY 223
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K I G ++ GA+ G ++ + GP M+ A+ L + + L +R
Sbjct: 224 SGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH---TGPAMSAFNAWVLLKGLETLAIR 280
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS-MANKEYGFGGLLCLDME-- 234
++ A A + V YP L HP ++L K M+ G G ++ ++
Sbjct: 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS----GGGTVVTFALDCP 336
Query: 235 ---TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291
+++A +++ ++ ++ +LG ++L++ ++T + E +A G+ G+
Sbjct: 337 EDVAKQRAFEVLDKMRLID----ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGV 392
Query: 292 VRMSVG 297
VR+SVG
Sbjct: 393 VRISVG 398
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 6e-88
Identities = 112/303 (36%), Positives = 174/303 (57%), Gaps = 19/303 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD + E + +A+
Sbjct: 89 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRFVDAAKPEEIRAAM- 146
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 206
Query: 120 SISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S++K+I+G D+I G + G ++ + G M+P A+ + LG+
Sbjct: 207 SVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI---TGGCMSPFNAWLTLRGVKTLGI 263
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS-MANKEYGFGGLLCLDME- 234
RM+ HC AL AR ++ +V YPGL HP +EL + M+ GG++ ++
Sbjct: 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS----LPGGIISFEIAG 319
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
E R++N ++ +AVSLG ETL+ S T S + EE+ AGI+ GL+R+
Sbjct: 320 GLEAGRRMINSVELCL----LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRL 375
Query: 295 SVG 297
SVG
Sbjct: 376 SVG 378
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 9e-87
Identities = 109/302 (36%), Positives = 158/302 (52%), Gaps = 17/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S L L G V+ TLYG T A L H + VD++D + + +A+
Sbjct: 90 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRHVDMADLQALEAAM- 147
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P LGAD+VVH
Sbjct: 148 TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVH 207
Query: 120 SISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +K++SG DI AG V G LV+ + + + G ++P A L I L L
Sbjct: 208 SATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDM---TGAVLSPHDAALLMRGIKTLNL 264
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235
RM HC A + A + + + YPGL P + L + + GG++ +++
Sbjct: 265 RMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIAFELKGG 321
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
R MN LQ ++ AVSLG E+L S T S EE+A GIS GLVR+S
Sbjct: 322 IGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLS 377
Query: 296 VG 297
VG
Sbjct: 378 VG 379
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-84
Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 18/303 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ ++ + +G H+++ LYG THAL H + I F++ + V +
Sbjct: 87 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTAIPGEVKKHM- 144
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPLVLSPARLGADVVV 118
+ TK++YFE+ +NPTL + ++ + + AH + GV V+ DNTF SP++ +P G DVVV
Sbjct: 145 KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVV 204
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
HS +K+I+G D++AG +CG A+L+ + M + G ++P A+ ++ + L
Sbjct: 205 HSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI---TGSVISPHDAWLITRGLSTLN 261
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234
+RMK A+ A +K KV YPG EDH H++ K +G ++ ++
Sbjct: 262 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMITFILKS 318
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
E A +L++ L+ +AVSLG E+L+ S T + + EE+ AGI+ G++R+
Sbjct: 319 GFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRL 374
Query: 295 SVG 297
SVG
Sbjct: 375 SVG 377
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 1e-84
Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 17/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ + +G H+++ LYG THAL H + + F+D++ + +
Sbjct: 23 MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF-GVEVDFIDMAVPGNIEKHL- 80
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTVVVDNTF-SPLVLSPARLGADVVV 118
+ T+++YFE+ +NPTL V +I + + A K + V+VDNTF SP++ +P LG D+VV
Sbjct: 81 KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
HS +K+I+G D++AG VC A+++ + + G ++P A+ ++ L
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI---TGAIISPHDAWLITRGTLTLD 197
Query: 178 LRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235
+R+K A A + + KV YPGL DHP HE+ K FG ++ D++
Sbjct: 198 MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK---MFGSMIAFDVDG 254
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
EKA ++++ + +AVSLG E+L+ S T + + EE+ AG++ L+R+S
Sbjct: 255 LEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLS 310
Query: 296 VG 297
VG
Sbjct: 311 VG 312
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 2e-79
Identities = 91/301 (30%), Positives = 148/301 (49%), Gaps = 16/301 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI V G +VA YGG++ L R FVD D + + +A+
Sbjct: 77 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL- 134
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ K++ ES SNP L V +I ++ LA + G VVDNTF SP + +P LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+++G +D++AG V V + + +G T ++ L + L R
Sbjct: 195 SCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN---IGVTGGAFDSYLLLRGLRTLVPR 251
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-E 236
M+ A + ++ L K+ +P L ++ HE+ GFG +L +++ E
Sbjct: 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFELDGDE 308
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
+ R + L + +A SLG E+L+S + + T + + E +A AGIS L+R+S
Sbjct: 309 QTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIST 364
Query: 297 G 297
G
Sbjct: 365 G 365
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 3e-79
Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 16/300 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+S+V L +G +VA +YGG+ LL+ PR+ + V+ + + V +AI
Sbjct: 158 MAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTKLDEVAAAI- 214
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+TK+++ ES +NP +++I ++S +AH +G V+VDN+ SP++ P LGAD+V+H
Sbjct: 215 GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMH 274
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KFI+G +D++AG + + + Q + G + P + I + LR
Sbjct: 275 SATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS---EGSGLAPFDCWLCLRGIKTMALR 331
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
+++ A A + KV Y GL DHP H L S A G G + +
Sbjct: 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSVA 388
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ L+ + F AVS G ++L+S + + + AE + G++ LVR+S G
Sbjct: 389 LSKHLVETTK---YFSI-AVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 4e-79
Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 17/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A S+V+ +L +G HVVA LYGGT L R + +FVD++D +AI
Sbjct: 92 MAATSTVM-ELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAI- 149
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TK+++ E+ +NP L + +I ++ +A G+ VVDNTF SP++ P LGAD+VVH
Sbjct: 150 RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVH 209
Query: 120 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
S +K+++G +D++ G AV G + M Q + +G P +F + L L
Sbjct: 210 SATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS---IGGVQGPFDSFLALRGLKTLPL 266
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235
RM+ HC AL A+ ++ KV+YPGL HP H L K + GFGG++ + ++
Sbjct: 267 RMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFGGIVSIVLKGG 323
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
+ A R + + +A SLG E+L++ T + + + GIS LVR+S
Sbjct: 324 FDAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLS 379
Query: 296 VG 297
VG
Sbjct: 380 VG 381
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 7e-78
Identities = 92/301 (30%), Positives = 143/301 (47%), Gaps = 19/301 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A L + G HVV YGGT L+ F N+ T V ++D + V +AI
Sbjct: 91 MAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTPVALADLDAVRAAI- 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ T++++ E+ +NP L++A+I +++L D V+VDNTF SP + P LGADVV+H
Sbjct: 149 RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLH 208
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I G +D++ GA+ ++ Q G P A+ + L LR
Sbjct: 209 STTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG---AGAVPGPFDAYLTMRGLKTLVLR 265
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
M+ H A A + + VLYPGL HP H + GFGG++ + M
Sbjct: 266 MQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGGMVSVRMRAGR 322
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
A +L + +A SLG E+L+ + T + + + LVR+SV
Sbjct: 323 TAAEQLCAKTNIFI----LAESLGSVESLIEHPSAMTHASTAGSQ---LEVPDDLVRLSV 375
Query: 297 G 297
G
Sbjct: 376 G 376
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 3e-77
Identities = 83/302 (27%), Positives = 154/302 (50%), Gaps = 18/302 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
++A ++ L +G ++ +YGGT+ + +FVD S +++ +AI
Sbjct: 92 LAATVTIT-HLLKAGDQIICMDDVYGGTNRYFRQVASEF-GLKISFVDCSKIKLLEAAI- 148
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVVV 118
TK+++ E+ +NPT V +I + + H G + +VVDNTF SP P LGAD+ +
Sbjct: 149 TPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISM 208
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
+S +K+++G +D++ G V +++ + Q + LG +P + + + L +
Sbjct: 209 YSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDCYLCNRGLKTLHV 265
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235
RM++H + A+ ++ KV+YPGL HP HEL+K G G++ ++ T
Sbjct: 266 RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTGMVTFYIKGT 322
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
+ A + L+ + +A SLG +E+L T + + ++ + GIS L+R+S
Sbjct: 323 LQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLS 378
Query: 296 VG 297
VG
Sbjct: 379 VG 380
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 5e-74
Identities = 64/303 (21%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+A+++ ++ G HV+ T Y + + + +TT++ D + +
Sbjct: 107 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTSWFDPLIGADIVKHL- 164
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTF-SPLVLSPARLGADVV 117
Q TK+++ ES + T+ V ++P + +++DNT+ + ++ G DV
Sbjct: 165 QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVS 224
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHL 176
+ + +K++ G +D + G A + + L+G ++ A+ ++ R + L
Sbjct: 225 IQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQMVDADTAY-ITSRGLRTL 279
Query: 177 GLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234
G+R+++H +L A + + +V +P L HE K G GL ++
Sbjct: 280 GVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFSFVLK 336
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294
+ L NYL N++ F MA S G YE+L+ + + + + + S L+R+
Sbjct: 337 KKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIRPQGE--IDFSGTLIRL 393
Query: 295 SVG 297
+G
Sbjct: 394 HIG 396
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 1e-71
Identities = 84/307 (27%), Positives = 153/307 (49%), Gaps = 23/307 (7%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+ +++L Q G H V+ +YGGTH T + T+F + + I
Sbjct: 80 SATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSFTN-DLLNDLPQLI- 135
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKG----VTVVVDNTF-SPLVLSPARLGAD 115
+ TK+++ E+ +NPTL V +I +++ L V +VVDNTF SP + +P GAD
Sbjct: 136 KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGAD 195
Query: 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IP 174
+VVHS +K+I+G +D++ G + + + Q A +G +P A+ L+ R +
Sbjct: 196 IVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IGAIPSPFDAW-LTHRGLK 251
Query: 175 HLGLRMKEHCHRALIFARRMK---KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231
L LR+++ A A + + + V YPGL+ HP+++++ ++ GG++
Sbjct: 252 TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH-RDALGGGMISF 310
Query: 232 DME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290
++ E A++ + + + +A SLG E+L+ T + E + +G+
Sbjct: 311 RIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDD 366
Query: 291 LVRMSVG 297
LVR+SVG
Sbjct: 367 LVRISVG 373
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 6e-67
Identities = 90/322 (27%), Positives = 147/322 (45%), Gaps = 39/322 (12%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+AIS+ ++ L +G VV L+G T +L P I FVD+ D V A
Sbjct: 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSF-GIEVRFVDVMDSLAVEHAC- 164
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
TK+L+ E+ISNP L VA++ LS++ H KG+ +VVD T P +L RLG D+ V
Sbjct: 165 DETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVL 224
Query: 120 SISKFISGGADIIAGAV--------------------CGPANLVNSMMDLHQGALML--L 157
S +KFISGG + G + GP + + L
Sbjct: 225 SSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFL-----YKARKEVFQNL 279
Query: 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELL 215
GP+++P A+ S + + LR++ C A A + + V +P L D P + +
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275
K G +L ++E++E + R M+ L+ + ++ ++L+ +
Sbjct: 340 KRQFR---YAGSILTFELESKEASYRFMDALKLIRRA----TNIHDNKSLILSPYHVIYA 392
Query: 276 ELNAEEKALAGISAGLVRMSVG 297
+ EE+ IS ++R+SVG
Sbjct: 393 LNSHEERLKLEISPAMMRLSVG 414
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-63
Identities = 90/330 (27%), Positives = 145/330 (43%), Gaps = 49/330 (14%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+A + L+ L G VVAA+ L+G T L +T +VD + E V A+
Sbjct: 81 QAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLM-GVTVRYVD-PEPEAVREAL- 137
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV 118
+T+ ++ E+++NP L V ++ L+ LA + GV +VVDNTF + + P GA VVV
Sbjct: 138 SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVV 197
Query: 119 HSISKFISGGADIIAGAV---------------------------CGPANLVNSMMDLHQ 151
S++K+ SG ++ GAV
Sbjct: 198 ESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFP-----ERV 252
Query: 152 GALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLE 207
L L G ++P A+ L + + + LR+ A A R++ + YPGL
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312
Query: 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267
+ P H + G +L LD+ E+A+R + ++ A +LG TL+
Sbjct: 313 EDPAHRNARKYLAS---GGPILTLDLGDLERASRFLGAIRL-----LKAANLGDARTLLV 364
Query: 268 CSGSSTSSELNAEEKALAGISAGLVRMSVG 297
++T S L E + AG++ GLVR+SVG
Sbjct: 365 HPWTTTHSRLKEEARLQAGVTPGLVRVSVG 394
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-61
Identities = 88/336 (26%), Positives = 141/336 (41%), Gaps = 52/336 (15%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH-EMVNSAI 59
+A L L +G ++V+ LYGGT R I F + E +
Sbjct: 83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRL-GIEVRFTSREERPEEFLALT 141
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVV 117
+T+ + ESI NP L + ++ L++ A +KGV ++VDNTF +L P GA +V
Sbjct: 142 -DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALV 200
Query: 118 VHSISKFISGGADIIAGAV-------------------------------CGPANLVNSM 146
HS++K++ G +IAGA+ G +
Sbjct: 201 THSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFI--- 257
Query: 147 MDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 202
+ L G + P A+ + + L LR + H L A + + V
Sbjct: 258 --VKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVN 315
Query: 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGY 261
YPGL HPHH+ + G +L ++ E A R ++ L+ + ++G
Sbjct: 316 YPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLISHL----ANVGD 369
Query: 262 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
TL S+T S+L+ EE+A AG+S +VR+SVG
Sbjct: 370 TRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG 405
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-38
Identities = 44/254 (17%), Positives = 82/254 (32%), Gaps = 36/254 (14%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--------------ITTTF 46
AIS+ L + G ++ + G + L + T
Sbjct: 93 THAISTALFGILRPGDELLY---ITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTE 149
Query: 47 VDISDHEMVNSAIVQGRTKVLYFES----ISNPTLAVANIPELSRLAHDK--GVTVVVDN 100
+ D E V +AI TK++ + + P+ ++ I E+ + V V VDN
Sbjct: 150 GGLVDFEAVAAAI-HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDN 208
Query: 101 TFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--LHQGALML 156
+ P +GAD++ S+ K GG G + G V + G
Sbjct: 209 CYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAE 268
Query: 157 LGPTMNP-KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215
G ++ + ++ PH + A+ A ++KLG P +
Sbjct: 269 AGASLYSLQEMYQGFFLAPH---VAGQALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQ 324
Query: 216 KSMANKEYGFGGLL 229
+ ++
Sbjct: 325 SVQFD---DKDRMI 335
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 7e-38
Identities = 51/313 (16%), Positives = 105/313 (33%), Gaps = 51/313 (16%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN-ITTTFVDISDHEMVNSAI 59
SAI + ++ L + L G R+C + + + + + I
Sbjct: 86 SSAILATILAL-KPKKVIHYLPELPGHP------SIERSCKIVNAKYFESDKVGEILNKI 138
Query: 60 VQGRTKVLYFESISN-PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPA-----RL 112
T V+ S + + + N ++ A +K V VD+ + + L +L
Sbjct: 139 -DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL 197
Query: 113 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 172
GAD+VV S K + G G + G LV+ + + G P + +
Sbjct: 198 GADLVVTSTDKLMEGPR---GGLLAGKKELVDKIY-IEG---TKFGLEAQPPLLAGIYRA 250
Query: 173 IPHLGL-RMKEHCHRALIFARRM-------KKLGLKVLYPGLEDHPHHELLKSMANKEYG 224
+ + L R+++ RA F K + E P ++K +
Sbjct: 251 LKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVY----- 305
Query: 225 FGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 283
++++ E L+ +G + + T+ G+S S ++ +
Sbjct: 306 --KDDTINIKKLIEIGFNLLK------NYGIITI------TVAGMPGASKSLRIDLTSRD 351
Query: 284 LAGISAGLVRMSV 296
I + ++
Sbjct: 352 AERIDDNYIIKAI 364
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-37
Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 41/244 (16%)
Query: 1 MSAISSVLMQLCSSGGHVVAA--------RTLYGGTHALLTHFFPRACNITTTFVDIS-- 50
AI + L +++ + G + + VD+
Sbjct: 102 THAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREY-GVKYKMVDLKDG 160
Query: 51 --DHEMVNSAIVQG-RTKVLYFESISN----PTLAVANIPELSRLAHD--KGVTVVVDNT 101
D V + + K+++ + + +L +A I E+ + + + V V VDN
Sbjct: 161 KVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNC 220
Query: 102 FSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN--SMMDLHQGALMLL 157
+ V P +GAD++ S+ K I GG G + G V + G
Sbjct: 221 YGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGEC 280
Query: 158 GPTMNP----KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213
G T ++ + ++ C R M+ G V P +
Sbjct: 281 GSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCARI------MELAGFDV-------LPKYN 327
Query: 214 LLKS 217
++
Sbjct: 328 DKRT 331
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 4e-35
Identities = 38/232 (16%), Positives = 73/232 (31%), Gaps = 39/232 (16%)
Query: 1 MSAISSVLMQLCSSGGHVVAA--------RTLYGGTHALLTHFFPRACNITTTFVDIS-- 50
A+ + L G +++ + G T I VD+
Sbjct: 101 THALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE-FGINYKQVDLKED 159
Query: 51 ---DHEMVNSAIVQGRTKVLYFESISN------PTLAVANIPELSRLAHD--KGVTVVVD 99
+ E + + + + + L + +I + + K + VD
Sbjct: 160 GKPNLEEIEKVL-KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218
Query: 100 NTF-SPLVLS-PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--LHQGALM 155
N + + P +GAD++ S+ K I GG G + G + + G
Sbjct: 219 NCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGG 278
Query: 156 LLGPTMNPKVAFELSERIPHLGLRMKEHCHR-----ALIFARRMKKLGLKVL 202
G T R + GL + H A++ +R M+ G +V+
Sbjct: 279 ECGSTF-------GVVRSMYQGLFLAPHISMEALKGAILCSRIMELAGFEVM 323
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-31
Identities = 44/245 (17%), Positives = 82/245 (33%), Gaps = 40/245 (16%)
Query: 1 MSAISSVLMQLCSSGGHVVAA--------RTLYGGTHALLTHFFPRACNITTTFVDIS-- 50
AIS+VL + ++ + G + +I + V +
Sbjct: 87 THAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSL--KDFHIGYSSVPLLEN 144
Query: 51 ---DHEMVNSAIVQGRTKVLYFE----SISNPTLAVANIPELSRLAHDKG--VTVVVDNT 101
D + + +TK++ + P+ + I E+ + V V VDN
Sbjct: 145 GDVDFPRIAKKM-TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNC 203
Query: 102 F-SPLVLS-PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LHQ-GALMLL 157
+ + P +GAD++ S+ K GG G + G LV+ L G
Sbjct: 204 YGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREA 263
Query: 158 GPTMNPKVAFELSERIPHLGLRMKEHCHR-----ALIFARRMKKLGLKVLYPGLEDHPHH 212
G ++ + G + H A A + + G++ P D P
Sbjct: 264 GASLYSL-------LEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGVEA-DPVW-DAPRT 314
Query: 213 ELLKS 217
+L++S
Sbjct: 315 DLIQS 319
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 50/304 (16%), Positives = 89/304 (29%), Gaps = 108/304 (35%)
Query: 36 FPRACNI--TTTFVDISDHEMVNSAIVQGRTKVLYFESISNP-----TLA----VANIP- 83
F +C I TT F ++D + T + + S + +
Sbjct: 262 FNLSCKILLTTRFKQVTD------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 84 -ELSRLAHDKGVTVVVDNTFSPLVLS---------PAR------LGADVVVHSISKFISG 127
+L R T +P LS A + D + I ++
Sbjct: 316 QDLPREVL----------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 128 ------------------GADIIAGAVC-----GPANLVNSMMD-LHQGALMLLGPTMNP 163
A I + + V +++ LH+ +L+ P
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QP 421
Query: 164 KVAFELSERIPHLGLRMKEHC------HRALIFARRM-KKLGLKVLYPGLED-----H-P 210
K E + IP + L +K HR+++ + K L P D H
Sbjct: 422 K---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 270
HH + N E+ E+ L + + F F+ + + T + SG
Sbjct: 479 HH-----LKNIEHP------------ERMT-LFRMV--FLDFRFLEQKIRHDSTAWNASG 518
Query: 271 SSTS 274
S +
Sbjct: 519 SILN 522
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 14/136 (10%)
Query: 47 VDISDHEMVNSAIVQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDN--- 100
VD E + + +GR + +NPT L + L+ +A + +++DN
Sbjct: 191 VDFEALENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYG 249
Query: 101 --TFSPLVLSPARLGADVVVH--SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156
+ + + + S+SK G G + A ++ ++ ++ L
Sbjct: 250 MPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRT--GIIVADAKVIEAVSAMNAVV-NL 306
Query: 157 LGPTMNPKVAFELSER 172
+A L
Sbjct: 307 APTRFGAAIATPLVAN 322
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 6e-06
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 27/99 (27%)
Query: 63 RTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPL--------VLSPAR 111
++ S +NPT ++ EL A ++ D +S + +L
Sbjct: 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACM 213
Query: 112 LGAD------VVVHSISK----------FISGGADIIAG 134
L + +V+HS+SK FI+G + ++
Sbjct: 214 LAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEK 252
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 53 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPA 110
+ + +G + + ++ +++++ + V ++V+ ++ + +S
Sbjct: 137 QTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK 196
Query: 111 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH----QGALMLLGPTMNPKVA 166
+GAD +V S K S A G + ++ + LLG T
Sbjct: 197 EIGADFIVGSGHK--SMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATI 254
Query: 167 FELSERIPHLGLRMKEHCH---RALIFARRMKKLGLKVLYPGLEDHP 210
L PH+ R+K +A FA M+KLG+K L +H
Sbjct: 255 ITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHD 301
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 60 VQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDN----TFSPLVLSPAR- 111
+ T ++ +NPT + + +L RLA+ + +V+DN F ++ S AR
Sbjct: 177 IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP 236
Query: 112 LGADVVVH--SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 169
L ++ S+SK G+ G + + ++ +++ L M P + E+
Sbjct: 237 LWNPNIILCMSLSKLGLPGSRC--GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEM 293
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 27/99 (27%)
Query: 63 RTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS---------PLVLS-P 109
RTK+++ S +NP+ +V ++ + G + D +S L
Sbjct: 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA 227
Query: 110 ARLGAD----VVVHSISK----------FISGGADIIAG 134
A+LG ++ S+SK F++G A+++
Sbjct: 228 AQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKN 266
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 35/213 (16%)
Query: 2 SAISSVLMQLCSSGGHVVAART----LYGGTHAL-LTHFFPRACNITTTFVDISDHEM-V 55
S I SV+ G ++ AR + HAL ++ I T +++H V
Sbjct: 83 SGILSVIQSFSQKKGDILMARNVHKSVL---HALDISQQEGHF--IETHQSPLTNHYNKV 137
Query: 56 NSAIVQGRTKVLYFESISNPTL--AVANIPELSRLAHDKGVTVVVDN------TFSPLVL 107
N + + L ++ P N+ E+ + H + V++D
Sbjct: 138 NLSRLNNDGHKLVV--LTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPD 195
Query: 108 SPARLGADVVVHSISK---FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 164
S AD VV S K ++ G+ + + + Q +
Sbjct: 196 STLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSP--------- 246
Query: 165 VAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197
++ + + + + L FA+R + +
Sbjct: 247 -SYLIMASL-ESAAQFYKTYDSTLFFAKRAQLI 277
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 63 RTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLV-----LSPARLGA 114
RTK + + NPT V + L +A G+ ++VD +S +V S + +
Sbjct: 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIES 233
Query: 115 D--VVVHSISK-FISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNP 163
D VV+ S+SK F + GA + G + L++ M L QG + P
Sbjct: 234 DKVVVIDSVSKKFSACGARV--GCLITRNEELISHAMKLAQG-------RLAP 277
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 27/106 (25%)
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-----LSPARLGAD-- 115
+TK + S SNP V + E+ A++ ++ D ++ LV S +
Sbjct: 154 KTKAIIINSPSNPLGEVID-REIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLE 212
Query: 116 --VVVHSISKFISGGADIIA--------GAVCGPANLVNSMMDLHQ 151
++++ SK G V ++ +++ L Q
Sbjct: 213 KTILINGFSK---------LYAMTGWRIGYVISNDEIIEAILKLQQ 249
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 100.0 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 100.0 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 100.0 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 100.0 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 100.0 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 100.0 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 100.0 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 100.0 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 100.0 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 100.0 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 100.0 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 100.0 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 100.0 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 100.0 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 100.0 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.97 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.97 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.97 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.96 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.96 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.96 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.96 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.96 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.96 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.96 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.96 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.96 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.96 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.96 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.96 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.96 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.96 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.96 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.96 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.96 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.96 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.96 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.96 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.96 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.96 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.96 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.96 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.96 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.96 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.96 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.96 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.96 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.96 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.96 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.96 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.96 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.96 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.95 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.95 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.95 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.95 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.95 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.95 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.95 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.95 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.95 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.95 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.95 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.95 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.95 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.95 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.95 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.95 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.95 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.95 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.95 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.94 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.94 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.94 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.94 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.94 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.94 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.94 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.94 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.94 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.94 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.94 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.94 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.94 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.94 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.94 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.94 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.94 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.94 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.94 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.93 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.93 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.93 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.93 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.93 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.93 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.93 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.93 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.93 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.93 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.93 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.93 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.93 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.93 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.93 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.93 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.93 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.93 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.93 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.92 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.92 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.92 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.87 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.92 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.92 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.92 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.92 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.92 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.92 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.91 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.91 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.91 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.91 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.91 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.91 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.91 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.9 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.9 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.9 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.9 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.9 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.9 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.9 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.9 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.89 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.89 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.89 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.89 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.89 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.89 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.89 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.89 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.89 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.88 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.88 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.88 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.88 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.88 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.88 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.88 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.88 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.88 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.88 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.88 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.87 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.87 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.87 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.87 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.87 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.87 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.86 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.86 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.86 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.86 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.85 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.85 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.85 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.85 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.85 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.85 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.85 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.84 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.84 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.84 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.83 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.83 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.83 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.83 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.82 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.82 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.82 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.82 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.82 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.82 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.81 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.81 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.81 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.81 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.81 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.8 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.8 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.8 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.8 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.79 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.79 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.79 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.79 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.79 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.78 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.78 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.78 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.78 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.76 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.76 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.75 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.74 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.57 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.69 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.67 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.65 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.63 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.58 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.56 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.49 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.44 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.32 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.18 |
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=320.59 Aligned_cols=298 Identities=30% Similarity=0.481 Sum_probs=263.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++++++++||+|++++|+|+++...+.....+ .|.++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 106 ~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~ai-~~~t~~v~le~p~NptG~~~ 183 (414)
T 3ndn_A 106 MAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFETPSNPMQSLV 183 (414)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHT-SSCCSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCccc
Confidence 36788889999999999999999999998887654444 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCC-CeeEEEEEcChhHHH-HHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVN-SMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~-~l~~~~~~~~~~~ 157 (324)
|+++|+++|+++|+++|+|++|+ +....+...++|+++.|+||+++++| .+ +|+++++++.+. .+..... ..
T Consensus 184 ~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~-~G~vv~~~~~~~~~l~~~~~----~~ 258 (414)
T 3ndn_A 184 DIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVL-GGAILGDREYIDGPVQKLMR----HT 258 (414)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCC-CEEEEECHHHHTTHHHHHHH----HH
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCce-EEEEEECHHHHHHHHHHHHH----Hc
Confidence 99999999999999999999994 44456777899999999999999988 56 599999988776 6655444 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+..+.+..++.++..++++..++++..++++++.++|++++. .+.+|.+++++.+.++.++.+ |.|++++|++++
T Consensus 259 g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~G~~l~~~l~~ 335 (414)
T 3ndn_A 259 GPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---GGGTVVTFALDC 335 (414)
T ss_dssp CCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCC---CCceEEEEEEcC
Confidence 667788888888888888999999999999999999999876 678899999999999999875 689999999974
Q ss_pred -----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 236 -----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 236 -----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
.+...+|+++++. ++ +++|+|+.++++++|+...|..+++.++...|+.+++||||+| .++.++++++|+
T Consensus 336 ~~~~~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG-~e~~~dli~dl~ 410 (414)
T 3ndn_A 336 PEDVAKQRAFEVLDKMRL---ID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDDLIADID 410 (414)
T ss_dssp CGGGHHHHHHHHHHHCSS---SE-ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCcc---ce-EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHH
Confidence 6778999999986 44 5889999999999999999999999999999999999999999 999999999999
Q ss_pred HHH
Q 020548 311 KAL 313 (324)
Q Consensus 311 ~~l 313 (324)
++|
T Consensus 411 ~al 413 (414)
T 3ndn_A 411 RAL 413 (414)
T ss_dssp HHH
T ss_pred Hhh
Confidence 987
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=323.91 Aligned_cols=300 Identities=31% Similarity=0.491 Sum_probs=252.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..++++++++||+|++++|+|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.
T Consensus 107 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~~~~v~~~d~~~l~~ai-~~~t~~v~~e~p~NptG~~~ 184 (430)
T 3ri6_A 107 MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS-FGIEVRFVDVMDSLAVEHAC-DETTKLLFLETISNPQLQVA 184 (430)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCCCCCeec
Confidence 36788889999999999999999999998866544444 79999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEE--cChhH---------------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC--GPANL--------------- 142 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~--~~~~~--------------- 142 (324)
|+++|+++|+++|+++|+|++| .+....+...|+|+++.|+||+++++|..++|+++ .+.++
T Consensus 185 dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~ 264 (430)
T 3ri6_A 185 DLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGP 264 (430)
T ss_dssp CHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGG
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhch
Confidence 9999999999999999999999 45557788889999999999999998877778887 44333
Q ss_pred ---HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHH
Q 020548 143 ---VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 143 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~ 217 (324)
+..++.. .....|..+++..+++.+.+++.+..+++++.+++.++.++|++++. ++.+|.++++|.|.++.+
T Consensus 265 ~~~i~~~~~~---~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~ 341 (430)
T 3ri6_A 265 MAFLYKARKE---VFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKR 341 (430)
T ss_dssp GHHHHHHHHT---HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHH
T ss_pred hhHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHH
Confidence 2222221 11245677888888888888888889999999999999999999875 688999999999999999
Q ss_pred HhccCCCcce-EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~-~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
+. |.|+ +++|++++.+.+.+|++.++.. + +++|+|+.++++++|+...|..++++.+...|+.+++||+|+
T Consensus 342 ~~----g~Gg~~lsf~l~~~~~~~~~~~~l~~~---~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsv 413 (430)
T 3ri6_A 342 QF----RYAGSILTFELESKEASYRFMDALKLI---R-RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSV 413 (430)
T ss_dssp HC----SSCCSEEEEECSSHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEEC
T ss_pred hC----CCCceEEEEEECCHHHHHHHHHhCCcc---e-ecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 87 5677 9999999878899999999973 3 588999999999999999999999888888899999999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 020548 297 GYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~ 314 (324)
| .|+.++++++|+++|+
T Consensus 414 G-~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 414 G-IEEIEDLKEDILQALC 430 (430)
T ss_dssp C-SSCHHHHHHHHHHHHC
T ss_pred c-cCCHHHHHHHHHHhhC
Confidence 9 9999999999999983
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=315.76 Aligned_cols=299 Identities=35% Similarity=0.598 Sum_probs=262.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh-cCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+|+.. +.+++++||+|+++.+.|++....+... ..+ .|+++.+++.+|++++++++ ++++++|++++|+||+|.+
T Consensus 92 ~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~np~G~~ 168 (400)
T 3nmy_A 92 MAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT-AGLDFSFVDLTDPAAFKAAI-RADTKMVWIETPTNPMLKL 168 (400)
T ss_dssp HHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHH-HCCEEEEECTTSHHHHHHHC-CTTEEEEEEESSCTTTCCC
T ss_pred HHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhh-cCeEEEEECCCCHHHHHHHh-ccCCCEEEEECCCCCCCee
Confidence 356776 5668899999999999999887776544 334 69999999999999999999 8899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEE-EE-EcChhHHHHHHHhhhhhhhc
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAG-AV-CGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G-~i-~~~~~~~~~l~~~~~~~~~~ 156 (324)
.|+++|+++|+++|+++|+|++|+ ++...+...++|+++.|+||+++++|.+++| ++ ..++++.+.+..... .
T Consensus 169 ~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~----~ 244 (400)
T 3nmy_A 169 VDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN----S 244 (400)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH----H
T ss_pred ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH----h
Confidence 999999999999999999999994 4456777889999999999999998888767 44 557788888877665 5
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
.+..+.+..++.++..++.+..+++++.++++++.++|++++. .+.+|.+++++.|.++.++.+ |.|++++|+++
T Consensus 245 ~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~---g~G~~~~~~l~ 321 (400)
T 3nmy_A 245 IGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFGGIVSIVLK 321 (400)
T ss_dssp HCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEET
T ss_pred cCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCceEEEEeC
Confidence 5677788888888888888889999999999999999999876 688999999999999999875 68999999998
Q ss_pred C-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 235 T-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 235 ~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
+ .+...+|++.++.. + +++|+|+.++++++|+...|..+++..+...|++++.+|+|+| .++.++++++|+++|
T Consensus 322 ~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-le~~~dli~dl~~al 396 (400)
T 3nmy_A 322 GGFDAAKRFCEKTELF---T-LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVG-IEDLGDLRGDLERAL 396 (400)
T ss_dssp THHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCcc---e-EecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHHHHHHHH
Confidence 5 45688999999863 3 5889999999999999999999999999999999999999999 999999999999999
Q ss_pred H
Q 020548 314 S 314 (324)
Q Consensus 314 ~ 314 (324)
+
T Consensus 397 ~ 397 (400)
T 3nmy_A 397 V 397 (400)
T ss_dssp C
T ss_pred h
Confidence 7
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=310.47 Aligned_cols=301 Identities=31% Similarity=0.551 Sum_probs=260.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCc-eEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT-KVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~-~~v~~~~~~nptG~~~ 80 (324)
+|+..++++++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ ++++ ++|++++|+||+|.+.
T Consensus 140 ~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tv~lV~le~p~NptG~v~ 217 (445)
T 1qgn_A 140 CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELAL-NQKKVNLFFTESPTNPFLRCV 217 (445)
T ss_dssp HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHH-HHSCEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCCCCEEEEeCCCCCCCccc
Confidence 5788889988999999999999999988876544555 79999999999999999999 6778 9999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++|+++|+++|+|++| .++...+...++|++++|+||+++++|...+|++++++++++.+..... ..|.
T Consensus 218 dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~----~~g~ 293 (445)
T 1qgn_A 218 DIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH----ILGG 293 (445)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH----HHCC
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHH----HhCC
Confidence 9999999999999999999999 4455667778999999999999998764325999999999888876554 4566
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-H
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-E 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~ 236 (324)
.+.+..++.++..++.+..+++++.++++++.++|++++. ++.+|.+++++.|.++.++.+ +.|++++|.+++ .
T Consensus 294 ~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~g~ivsf~l~~~~ 370 (445)
T 1qgn_A 294 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDL 370 (445)
T ss_dssp CCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---CCCSEEEEEESSCH
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhcc---CCCcEEEEEECCCH
Confidence 6777777777777888888889999999999999999875 677899889999999988765 578999999984 3
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+....|++.++. ++ +++|+|+.++++++|....|..++++++..+|++++.||+|+| .++.++++++|+++++++
T Consensus 371 ~~~~~~l~~l~~---~~-i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 371 LTTAKFVDALKI---PY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFDDLKADILQALDSI 445 (445)
T ss_dssp HHHHHHHHHCSS---SE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC---ce-EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhC
Confidence 568889999875 33 5889999999999999888888888889999998899999999 999999999999999753
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=306.06 Aligned_cols=298 Identities=21% Similarity=0.395 Sum_probs=251.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
++|+..++.+++++||+|+++.++|+++...+...+.+ .|+++.+++.+|++++++++ +++|++|++++|+||+|.+.
T Consensus 107 t~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~d~~~le~ai-~~~tklV~~e~~~NptG~v~ 184 (415)
T 2fq6_A 107 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPGSITMEVH 184 (415)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGGC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhh-ccCCcEEEEECCCCCCCEee
Confidence 36888899989999999999999999998888655555 79999999999999999999 78899999999999999999
Q ss_pred ChHHHHHHHHh--cCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHD--KGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~--~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++|++ +|+++++|++|+ ++...|...++|++++|+||+++++|.+++|++++++++++.+..... ..
T Consensus 185 dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~----~~ 260 (415)
T 2fq6_A 185 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY----LM 260 (415)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH----HT
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHH----hc
Confidence 99999999999 999999999994 445667778999999999999999987766999998888888876654 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
|..+.+..++.++..++.+..++++..+++..+.++|++++. ++.+|.++.++.+.++.++.+ +.|++++|.+++
T Consensus 261 G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---~~g~i~sf~l~g 337 (415)
T 2fq6_A 261 GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFSFVLKK 337 (415)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEEEEESS
T ss_pred CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEECC
Confidence 666777777766666777888889999999999999999865 567899999999988887653 578899999986
Q ss_pred ---HHHHHHHHHHhhccccccccccccCCccceecc--ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 236 ---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 236 ---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
......|++.++. ++ +++|+|+.++++.+ |+..+|.... ...|..++.||+|+| .+++++++++|.
T Consensus 338 ~~~~~~~~~~l~~l~~---~~-~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G-~e~~~d~i~~l~ 408 (415)
T 2fq6_A 338 KLNNEELANYLDNFSL---FS-MAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIG-LEDVDDLIADLD 408 (415)
T ss_dssp CCCHHHHHHHHTTCSS---CE-ECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECC-SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCc---Ce-EeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEec-CCCHHHHHHHHH
Confidence 5689999999885 33 58899999999987 7655432110 124667799999999 999999999999
Q ss_pred HHHHhh
Q 020548 311 KALSRM 316 (324)
Q Consensus 311 ~~l~~~ 316 (324)
++|+++
T Consensus 409 ~al~~~ 414 (415)
T 2fq6_A 409 AGFARI 414 (415)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=297.45 Aligned_cols=295 Identities=33% Similarity=0.507 Sum_probs=254.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
++|+..++.+++++||+|+++.|+|+++...+...... .|.++.+++.+|++++++++ ++++++|++++|+||||.+.
T Consensus 91 t~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~ 168 (392)
T 3qhx_A 91 MAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTG-WNVEYTPVALADLDAVRAAI-RPTTRLIWVETPTNPLLSIA 168 (392)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHh-cCcEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCCCCcEEe
Confidence 36788899888999999999999999988887655555 79999999999999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCC-CeeEEEEEcC-hhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGA-DIIAGAVCGP-ANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g-~r~~G~i~~~-~~~~~~l~~~~~~~~~~~ 157 (324)
|+++|+++|+++|+++|+|++| .++...+...++|+++.|+||+++++| .+ +|+++.+ +++.+.+..... ..
T Consensus 169 ~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~-~G~v~~~~~~~~~~l~~~~~----~~ 243 (392)
T 3qhx_A 169 DIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVV-GGALVTNDEELDQSFAFLQN----GA 243 (392)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCC-CEEEEESCHHHHHHHHHHHH----HH
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCce-EEEEEECcHHHHHHHHHHHH----hc
Confidence 9999999999999999999999 445567778899999999999999987 46 5999887 688888877665 45
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+....+..++.++..++.+..++++..++++++.++|++++. .+.+|.+++++.+.++.++.+ |.|++++|++++
T Consensus 244 g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~~~~l~~ 320 (392)
T 3qhx_A 244 GAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGGMVSVRMRA 320 (392)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEETT
T ss_pred CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCC---CCceEEEEEeCC
Confidence 666777777777777777888889999999999999999875 678899999999999999875 689999999985
Q ss_pred -HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 236 -EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 236 -~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
....+.|++.++. ++ +++|+|+.++++++|....|..+... ..|+.++.||||+| .+++++++++|+++|
T Consensus 321 ~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg-~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 321 GRTAAEQLCAKTNI---FI-LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLDDLKQAL 391 (392)
T ss_dssp CHHHHHHHHHHCSS---SE-ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECC-SSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCC---ce-ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEec-cCCHHHHHHHHHHHh
Confidence 5778899999986 44 48899999999998887766554443 46788899999999 999999999999987
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=296.45 Aligned_cols=300 Identities=35% Similarity=0.561 Sum_probs=256.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+||+|.+.|
T Consensus 85 ~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 162 (389)
T 3acz_A 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPR-FGIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSD 162 (389)
T ss_dssp HHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHH-TTCEEEEECTTCHHHHHHTC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCCeecC
Confidence 5788888888899999999999999988776443334 79999999999999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhccCC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~~~~ 159 (324)
+++|+++|+++|+++|+|++|+ ++...+.+.++|+++.|+||+++++++|++|+++.++ ++++.+..... ..+.
T Consensus 163 l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~----~~g~ 238 (389)
T 3acz_A 163 IKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK----DAGS 238 (389)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH----HHCC
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH----hcCC
Confidence 9999999999999999999994 4444677789999999999999999998669999988 88888877654 3455
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 237 (324)
..++..++..+..++.+..++++..++++.+.++|++++. .+.+|.+.+.+.+.++.+..+ +.|++++|.+++.+
T Consensus 239 ~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~---g~g~~~~~~l~~~~ 315 (389)
T 3acz_A 239 LMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFE 315 (389)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEESSHH
T ss_pred CCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCeEEEEEECCHH
Confidence 6677777766667777878888889999999999999875 677899988888988887653 57889999997655
Q ss_pred HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 238 ~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
....+++.++... .++|+|+.++++++|....|..++++++...|++++.||+|+| .+++++++++|.++|+.
T Consensus 316 ~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 316 AAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQALEL 388 (389)
T ss_dssp HHHHHHTTCSSSE----EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcE----ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 6777777766522 4778999999999999988888888888888998899999999 99999999999999864
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=292.97 Aligned_cols=302 Identities=28% Similarity=0.496 Sum_probs=254.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++. ++++||+|++++|+|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 93 ~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~t~~v~~~~p~nptG~~~~ 169 (403)
T 3cog_A 93 AATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-FGLKISFVDCSKIKLLEAAI-TPETKLVWIETPTNPTQKVID 169 (403)
T ss_dssp HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-GTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCCCeeeC
Confidence 57888888 8899999999999999987776555555 79999999988999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcC-CEEEEcCCCCcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 82 IPELSRLAHDKG-VTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 82 ~~~i~~l~~~~~-~~~ivD~~~~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
+++|+++|+++| +++|+|++|+.+ ...+.+.++|++++|+||++++++++.+|++++ ++++.+.+..... ..+
T Consensus 170 l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~----~~g 245 (403)
T 3cog_A 170 IEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQN----SLG 245 (403)
T ss_dssp HHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHH----HHC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHH----hcC
Confidence 999999999999 999999999544 346677899999999999999888632499988 4788888877655 345
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
...++..++++...++.+..+++++.+++..+.++|++++. ++.+|.+.+.+.+.++.+..+ +.|++++|.++ .
T Consensus 246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~~~~l~~~ 322 (403)
T 3cog_A 246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTGMVTFYIKGT 322 (403)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEEEEESSC
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC---CCceEEEEEecCC
Confidence 55666666666666777888888889999999999999876 678899988888888876543 57899999997 4
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+...++++.+++.. .++|+|+.++++++|+...|...+++.+...|+++++||+|+| .+++++++++|.++|+.
T Consensus 323 ~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 323 LQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LEDEEDLLEDLDQALKA 397 (403)
T ss_dssp HHHHHHHHHHCSSSE----ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcce----EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 466778888777522 3789999999999999988888888888888988899999999 99999999999999988
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
+.+
T Consensus 398 ~~~ 400 (403)
T 3cog_A 398 AHP 400 (403)
T ss_dssp HCC
T ss_pred hhc
Confidence 754
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=290.98 Aligned_cols=300 Identities=28% Similarity=0.453 Sum_probs=249.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++. ++++||+|+++.|+|++....+...... .|.++.+++.+| +++++++ ++++++|++++|+||||.+.|
T Consensus 81 ~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d-~~l~~~i-~~~t~lv~~~~~~nptG~~~~ 156 (393)
T 1n8p_A 81 ATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTNDLL-NDLPQLI-KENTKLVWIETPTNPTLKVTD 156 (393)
T ss_dssp HHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESSHH-HHHHHHS-CSSEEEEEECSSCTTTCCCCC
T ss_pred HHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEeCCCh-HHHHHhc-ccCceEEEEECCCCCcceecC
Confidence 57888888 8999999999999999877766444444 799999998878 9999999 788999999999999999999
Q ss_pred hHHHHHHHHhc----CCEEEEcCCCCcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhh
Q 020548 82 IPELSRLAHDK----GVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM 155 (324)
Q Consensus 82 ~~~i~~l~~~~----~~~~ivD~~~~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~ 155 (324)
+++|.++|+++ |+++|+|++|+.+ ..++...++|++++|+||+++++|+|++|+++. ++++++.+.....
T Consensus 157 l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~---- 232 (393)
T 1n8p_A 157 IQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN---- 232 (393)
T ss_dssp HHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHH----
Confidence 99999999999 9999999999443 235666789999999999999999887799987 4788888877654
Q ss_pred ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC---ceeCCCCCCCchhHHHHHHhccCCC-c-ceEEE
Q 020548 156 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKSMANKEYG-F-GGLLC 230 (324)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~-~-g~~~~ 230 (324)
..+..+.+..++.+...++.+..++++..++++.+.++|++++. .+.+|.+.+.+.+.++.+..+ + . |++++
T Consensus 233 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~---~~~~~~i~~ 309 (393)
T 1n8p_A 233 AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR---DALGGGMIS 309 (393)
T ss_dssp HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG---GGCCCSEEE
T ss_pred hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCC---CCCCccEEE
Confidence 34455566666655556667778888888999999999998864 456788888888888877543 2 4 78999
Q ss_pred EEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHH
Q 020548 231 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 309 (324)
Q Consensus 231 ~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l 309 (324)
|.++ .......|++.++. ++ +++|+|+++++..+|+..+|..++++++..+|++++.||+|+| .++++++++++
T Consensus 310 ~~l~~~~~~~~~~l~~l~~---~~-~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g-~~~~~~~i~~l 384 (393)
T 1n8p_A 310 FRIKGGAEAASKFASSTRL---FT-LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IEDTDDLLEDI 384 (393)
T ss_dssp EEESSCHHHHHHHHHHCSS---SE-ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEeCCcHHHHHHHHhhCCc---ce-ECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHHH
Confidence 9997 44678889999875 33 4889999999999998888877776677778888899999999 99999999999
Q ss_pred HHHHHhhh
Q 020548 310 EKALSRMQ 317 (324)
Q Consensus 310 ~~~l~~~~ 317 (324)
.++|+++.
T Consensus 385 ~~al~~~~ 392 (393)
T 1n8p_A 385 KQALKQAT 392 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998875
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=286.34 Aligned_cols=303 Identities=33% Similarity=0.591 Sum_probs=250.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|.|+++...+...... .|.++.+++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 88 ~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~t~~v~l~~p~NptG~v~~ 165 (404)
T 1e5e_A 88 GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETPANPTLKIID 165 (404)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCcEEEEECCCCCCCcccC
Confidence 5788888888999999999999999998855433334 79999999988999999999 789999999999999999999
Q ss_pred hHHHHHHHHh-cCCEEEEcCCCCcCC-CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhcc-
Q 020548 82 IPELSRLAHD-KGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLL- 157 (324)
Q Consensus 82 ~~~i~~l~~~-~~~~~ivD~~~~~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~- 157 (324)
+++|+++|++ +|+++|+|++|+.+. ..+...++|+++.|+||+++++|+|++||+++++++++ .+..... ..
T Consensus 166 l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~----~~~ 241 (404)
T 1e5e_A 166 MERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIK----DIT 241 (404)
T ss_dssp HHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCC----CCC
T ss_pred HHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHH----hCC
Confidence 9999999999 999999999995543 35666789999999999999999995599999998887 7766544 33
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+...++..++.....+..+..+.++..++.+.+.++|++++. .+.+|.+.+.|.+.++.+..+ +.|+++.|++++
T Consensus 242 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~~~~~~~ 318 (404)
T 1e5e_A 242 GSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMITFILKS 318 (404)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCCSEEEEEETT
T ss_pred CCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEeCC
Confidence 455666655555555666777888888999999999998864 467788888888888876543 568899999985
Q ss_pred H-HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 E-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 ~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
. +...+++++++... .+.++|+.++++++|....|..+++..+...|++++++|+|+| .++.++++++|+++++
T Consensus 319 ~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~e~~~~li~~l~~al~ 393 (404)
T 1e5e_A 319 GFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIADFKQGLD 393 (404)
T ss_dssp HHHHHHHHHHTCSSSE----ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHHH
Confidence 4 44666776665422 4778999999999999988888888888888887899999999 8999999999999998
Q ss_pred hhhh
Q 020548 315 RMQD 318 (324)
Q Consensus 315 ~~~~ 318 (324)
.+-+
T Consensus 394 ~~~~ 397 (404)
T 1e5e_A 394 ALLR 397 (404)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=283.79 Aligned_cols=301 Identities=37% Similarity=0.565 Sum_probs=240.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+||||.+.|
T Consensus 91 ~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 168 (398)
T 1gc0_A 91 GAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMAD 168 (398)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCCccccc
Confidence 5788888888999999999999999998887554444 79999999988999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhc-cC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALML-LG 158 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~-~~ 158 (324)
+++|+++|+++|+++|+|++|+. ....+...++|+++.|+||+++++++|++|+++.+++.++ .+..... . .+
T Consensus 169 l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~----~~~~ 244 (398)
T 1gc0_A 169 IAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK----DMTG 244 (398)
T ss_dssp HHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH----HHTC
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhh----ccCC
Confidence 99999999999999999999943 3345566789999999999999999987799999987665 4554433 3 45
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
++.++..++.+...++.+..+.++..++++.+.++|++++. .+.+|.+.+.+.+.++.+..+ +.|+++.|++++.
T Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 321 (398)
T 1gc0_A 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIAFELKGG 321 (398)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTTEEEEEETTH
T ss_pred CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC---CCceEEEEEECCC
Confidence 56667666666666677788888899999999999999875 566788877777777775432 5789999999753
Q ss_pred -HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 237 -EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 237 -~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
+....++++++... .++|+|+.++++++|....|...+.+.+...|++++.||+|+| .++++++++++.++|++
T Consensus 322 ~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 322 IGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHHHHh
Confidence 45777888877532 4678999999999999888888888888889998999999999 99999999999999986
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 397 ~ 397 (398)
T 1gc0_A 397 S 397 (398)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=280.22 Aligned_cols=303 Identities=30% Similarity=0.451 Sum_probs=247.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEe-cCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++.+++++||+|+++.++|+++...+...... .|+++.++ +.+|++++++++ ++++++|++++++||+|.+.
T Consensus 84 ~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~n~~G~~~ 161 (421)
T 2ctz_A 84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIP 161 (421)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHhh-ccCCeEEEEECCCCCCCccc
Confidence 5788888888999999999999999988877443334 79999999 888999999999 78999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-C-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC--hhH----HHHHHHh---
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-S-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANL----VNSMMDL--- 149 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~--~~~----~~~l~~~--- 149 (324)
|+++|+++|+++|+++|+|++| + ++...+...++|++++|+||+++++|.++||+++.+ +++ .+.+...
T Consensus 162 ~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g 241 (421)
T 2ctz_A 162 DLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG 241 (421)
T ss_dssp CHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGG
T ss_pred CHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccch
Confidence 9999999999999999999999 4 233456667899999999999999998885555642 222 2223211
Q ss_pred -------------------hhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCC
Q 020548 150 -------------------HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208 (324)
Q Consensus 150 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~ 208 (324)
........|..+.+..+++...+++.+..+++++.++++++.++|++++. .+.+|.+++
T Consensus 242 ~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~ 321 (421)
T 2ctz_A 242 YHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH 321 (421)
T ss_dssp GTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT
T ss_pred hhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCC
Confidence 00001124556777777777777788888888888999999999999865 345788888
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
++.|.++.++.+ .+.|++++|++++ ......|+++++. ++ +++++|+.++++++|....|..+++..+...|+
T Consensus 322 ~~~~~~~~~~~~--~~~g~ivsf~l~~~~~~~~~~~~~l~~---~~-~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~ 395 (421)
T 2ctz_A 322 HPHHDRAQKYFK--GKPGAVLTFGLKGGYEAAKRFISRLKL---IS-HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGV 395 (421)
T ss_dssp CTTHHHHHHHHT--TCCCSEEEEEETTHHHHHHHHHHTCSS---SE-ECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTC
T ss_pred CCCHHHHHHhcc--CCCceEEEEEeCCCHHHHHHHHHhCCc---ce-ecccCCCCCceeeCCcccccccCCHHHHHhcCC
Confidence 999999988762 1578999999986 3568889999875 33 477999999999999999998888888888999
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
+++.||+|+| .++.++++++|+++|
T Consensus 396 ~~~~vRlS~g-~e~~~~li~~l~~al 420 (421)
T 2ctz_A 396 SPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp CTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred CCCeEEEEeC-CCCHHHHHHHHHHHh
Confidence 9999999999 999999999999987
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=273.57 Aligned_cols=301 Identities=38% Similarity=0.636 Sum_probs=245.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|+|+++...+...... .|.++..++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 90 ~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 167 (398)
T 2rfv_A 90 SAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM-RPETKVVYIETPANPTLSLVD 167 (398)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSBTTTTBCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCcccC
Confidence 5788888888999999999999999998877443334 78999999989999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhhhcc-C
Q 020548 82 IPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALMLL-G 158 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~~~~-~ 158 (324)
+++|+++|+++|+++|+|++|+ +....+...++|+++.|+||+++++|+|++||+++++++++ .+..... .. +
T Consensus 168 l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~----~~~~ 243 (398)
T 2rfv_A 168 IETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK----DITG 243 (398)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH----HTTC
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH----hCCC
Confidence 9999999999999999999995 33345666789999999999999999986699999988876 5554443 33 4
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
.+.++..++.+...++.+..+.++..++++.+.+.|++++. .+.+|.+.+.+.+.++.+..+ +.|++++|++++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~~~~~~~~ 320 (398)
T 2rfv_A 244 GCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPGGIISFEIAGG 320 (398)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEETTH
T ss_pred CCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEEcCC
Confidence 45555555555555566677778888899999999999874 566788877788777765432 478899999985
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
......+++.++. .| ++++.|+.++++++|....|..++.+.+...|..++.+|+|+| .++++++++++.++|+.
T Consensus 321 ~~~~~~l~~~~~~---~~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 321 LEAGRRMINSVEL---CL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHHHHHHHTTCSS---SE-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc---ce-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHh
Confidence 3456778777764 34 4779999999998988877777777777777887899999999 99999999999999976
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 396 ~ 396 (398)
T 2rfv_A 396 A 396 (398)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=271.70 Aligned_cols=299 Identities=32% Similarity=0.495 Sum_probs=244.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|.++.+++.+ ++++++++ ++++++|++++|+||+|.+.|
T Consensus 82 ~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~l~~~i-~~~~~~v~~~~~~n~~G~~~~ 158 (412)
T 2cb1_A 82 AATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL-MGVTVRYVDPE-PEAVREAL-SAKTRAVFVETVANPALLVPD 158 (412)
T ss_dssp HHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT-TTCEEEEECSS-HHHHHHHC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCC-HHHHHHHh-ccCCeEEEEeCCCCCCccccc
Confidence 5788888888999999999999999888777554444 79999998764 99999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-------------------
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA------------------- 140 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~------------------- 140 (324)
+++|+++|+++|+++|+|++|+. +...+...++|++++|+||++++|++++||+++.++
T Consensus 159 l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (412)
T 2cb1_A 159 LEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQI 238 (412)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC------
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccc
Confidence 99999999999999999999944 345666678999999999999999998744455552
Q ss_pred --------hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCCc
Q 020548 141 --------NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDHP 210 (324)
Q Consensus 141 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~~ 210 (324)
++.+.++.... ...+..+.+..++.....++.+..+.++..++++++.++|++.+. . +..|....++
T Consensus 239 ~~~~~~~~~~~~~~r~~~~---~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p 315 (412)
T 2cb1_A 239 PWEALRARCFPERVRTLGL---SLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDP 315 (412)
T ss_dssp -HHHHGGGHHHHHHHHHHT---TTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCT
T ss_pred hhhccchHHHHHHHHHHHH---HhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence 33344443321 123445667777666667777887888888999999999998753 4 6678888889
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.|.++.++.+ +.+++++|.+.+.+....++++++++. +.|+|+.++++++|+...|..+++.++..+|+.++
T Consensus 316 ~~~~~~~~~~---~~~~iv~~~~~~~~~~~~~l~~~~i~~-----~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (412)
T 2cb1_A 316 AHRNARKYLA---SGGPILTLDLGDLERASRFLGAIRLLK-----AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPG 387 (412)
T ss_dssp THHHHHHHCS---SSCSEEEEECSSHHHHHHHHHHCSSEE-----CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTT
T ss_pred cHHHHHHhCC---CCceEEEEEeCCHHHHHHHHHhCCeee-----ecccCCCcceeecCcccccccCCHHHHHhcCCCCC
Confidence 9999999875 578899999954556777777766521 55889999999999988888888888889999899
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.||+|+| .++++++++++.++|++
T Consensus 388 ~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 388 LVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred eEEEEec-cCCHHHHHHHHHHHHhh
Confidence 9999999 99999999999999875
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=273.05 Aligned_cols=299 Identities=30% Similarity=0.477 Sum_probs=235.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++. ++++||+|++++|.|+++...+...... .|.++.+++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 159 ~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 159 AALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCTTTCCCCC
T ss_pred HHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCceEEEEeCCCCCCCEeec
Confidence 46766664 7899999999999999998776555544 79999999998999999999 789999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCCcEEEeCCccccccC-CCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~d~~~~S~sK~~~~~-g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
+++|+++|+++|+++|+|++|. +....+.+.++|++++|+||+++++ |.++ ||++++ +++.+.+..... ..+
T Consensus 236 l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~-G~l~~~~~~l~~~l~~~~~----~~g 310 (464)
T 1ibj_A 236 IRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGEKLAKEVYFLQN----SEG 310 (464)
T ss_dssp HHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCC-EEEEECSHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcE-EEEEEChHHHHHHHHHHHH----hcC
Confidence 9999999999999999999993 4444566778999999999999876 5675 999887 478888876654 345
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
....+..++++...+..+..+.++..++...+.++|++++. ++.++.+...+.+.++.+.. .+.|++++|.+++.
T Consensus 311 ~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~---~g~g~~~~~~l~~~ 387 (464)
T 1ibj_A 311 SGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA---KGAGSVFSFITGSV 387 (464)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC---SCCCSEEEEECSCH
T ss_pred CCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC---CCCceEEEEEECCH
Confidence 55566555555555666777777777888888999998763 66778887777776665432 25688999999764
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.....|++.+.. +| ++++.|..++++++|....+...+++.+...|..++++|+|+| .++.++++++|+++++.+
T Consensus 388 ~~~~~~~~~L~~---~g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 388 ALSKHLVETTKY---FS-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHHHHHHCSS---SE-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCc---ce-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHHHHHHHHhhc
Confidence 445678888875 44 4789999999999887655443333333445666789999999 899999999999998764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=261.23 Aligned_cols=301 Identities=32% Similarity=0.543 Sum_probs=237.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++.+++++||+|+++.|+|+++...+...... .|.++.+++..|++++++++ ++++++|++++|+||||.+.|
T Consensus 24 ~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 101 (331)
T 1pff_A 24 GAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVID 101 (331)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHTC-CTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-cCCCeEEEEECCCCCcCcccC
Confidence 5788888888999999999999999988777433333 68899999888999999999 788999999999999999999
Q ss_pred hHHHHHHHHh-cCCEEEEcCCCCcC-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhc-c
Q 020548 82 IPELSRLAHD-KGVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALML-L 157 (324)
Q Consensus 82 ~~~i~~l~~~-~~~~~ivD~~~~~~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~-~ 157 (324)
+++|.++|++ +|+++|+|++|+.. ...+.+.++|++++|+||+++++|+|++|++++++ ++.+.+..... . .
T Consensus 102 ~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~----~~~ 177 (331)
T 1pff_A 102 IEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIK----DIT 177 (331)
T ss_dssp HHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCC----CCC
T ss_pred HHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHH----hhc
Confidence 9999999999 99999999999432 23445678999999999999999998449999998 88888876654 3 3
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+....+..++.+...+..+..+.++..++.+.+.+.|++++. ....+.+.+.+...++....+ +.+++++|.+++
T Consensus 178 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 254 (331)
T 1pff_A 178 GAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK---MFGSMIAFDVDG 254 (331)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCS---SCCSEEEEECSS
T ss_pred CCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEEECC
Confidence 445555555544444555666677778888999999988753 556677777777777665432 468899999975
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
......+++..+++. .++|+|+.++++.+|....+...+...+...|.+++.+|+|+| .++++++++.+.++|+.
T Consensus 255 ~~~~~~~l~~~gI~~----~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 255 LEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG-CENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHHHHHHHHTCSSSE----ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCce----eccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEe-cCCHHHHHHHHHHHHHH
Confidence 555555555544311 2568899999999988777777777777778888899999999 99999999999999875
Q ss_pred h
Q 020548 316 M 316 (324)
Q Consensus 316 ~ 316 (324)
+
T Consensus 330 ~ 330 (331)
T 1pff_A 330 V 330 (331)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=257.47 Aligned_cols=300 Identities=29% Similarity=0.448 Sum_probs=237.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|+|++....+...... .|.++..++.+|++++++++ ++++++|++++|+||||.+.|
T Consensus 78 ~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 155 (386)
T 1cs1_A 78 SAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPLLRVVD 155 (386)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-ccCCcEEEEeCCCCCCCcccC
Confidence 5788888888999999999999999877766444444 78999999988999999999 778999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCC-CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhhhccCC
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~~~~~~ 159 (324)
+++|.++|+++|+++|+|++|+.+. ..+...++|++++|+||++++++++++|+++.++ ++++.+..... ..+.
T Consensus 156 l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~----~~~~ 231 (386)
T 1cs1_A 156 IAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN----NIGV 231 (386)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH----HHTC
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHH----hcCC
Confidence 9999999999999999999995543 3455668999999999999998888559998875 78888877655 2334
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH-
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~- 236 (324)
...+..++.....++.+..+.++..++++.+.+.|++++. .+..|.+...+.+.++.+.. .+.|+++.|.+++.
T Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 308 (386)
T 1cs1_A 232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQ---KGFGAMLSFELDGDE 308 (386)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHC---SSCCSEEEEEESSCH
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhc---CCCceEEEEEECCCH
Confidence 4555554444445566777778888899999999998765 45568887777777776542 25788999999742
Q ss_pred HHHHHHHHHhhcccccccc--ccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQNYAQFGFM--AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+....+++.. |++ +.++|+.++++++|....|...++..+...|.+++++|+|+| .++++++++.|.++|+
T Consensus 309 ~~~~~~l~~~------gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~~i~~l~~al~ 381 (386)
T 1cs1_A 309 QTLRRFLGGL------SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFR 381 (386)
T ss_dssp HHHHHHHHTC------SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC------CcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHHHHHHHH
Confidence 3333444333 332 234788889999998777666666667777887899999999 9999999999999998
Q ss_pred hhh
Q 020548 315 RMQ 317 (324)
Q Consensus 315 ~~~ 317 (324)
.+.
T Consensus 382 ~~~ 384 (386)
T 1cs1_A 382 AAN 384 (386)
T ss_dssp HHT
T ss_pred Hhh
Confidence 875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=228.14 Aligned_cols=295 Identities=18% Similarity=0.202 Sum_probs=224.2
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++.++++|||+|+++. +.|..+...+. ..+.. .|+++.+++. .|++++++++ ++++++|++
T Consensus 88 ~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~-~G~~~~~v~~~~~g~~d~e~l~~ai-~~~tklV~i 165 (409)
T 3jzl_A 88 HAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKD-FHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGI 165 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGG-GTCEEEECCCCTTSCCCHHHHHHHC-CTTEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHH-cCCEEEEeCCCCCCCcCHHHHHHhc-cCCCeEEEE
Confidence 578888999999999999998 99999887652 23334 7899999987 5999999999 889999999
Q ss_pred ec----CCCCcccccChHHHHHHHHh--cCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~----~~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
++ |+||+|.+.|+++|+++|++ +|+++++|++|+.+. ..+...++|++++|+||++++++..+|||++++++
T Consensus 166 ~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 166 QRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp ECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred ECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHH
Confidence 99 99999999999999999999 999999999995543 46777899999999999999877555799999999
Q ss_pred HHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+..... +.....++.+.+. ..+++++..++.+++++.+++.++.++|+++|+++ +|. ++++.
T Consensus 246 li~~l~~~~~~~~~g~~~g~~~~~~--~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~-~~~~~-------- 313 (409)
T 3jzl_A 246 LVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGVEA-DPV-WDAPR-------- 313 (409)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC--------
T ss_pred HHHHHHHHhccccccccccccHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cCC-CCCCC--------
Confidence 9999987432 1222344444322 33455666778889999999999999999999977 576 44333
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccc----ccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
..-+++|.+++.+.+.+|++.++.....+.+ .....|++..+++.+-.+.+..+.+.....++.+.++...
T Consensus 314 -----~~~i~~i~l~~~~~~~~~~~~L~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~f~~~~~~e~~~~~~~~~~~~~~~ 388 (409)
T 3jzl_A 314 -----TDLIQSVSFHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYV 388 (409)
T ss_dssp -----SSSCCEEECSCHHHHHHHHHHHHHTSSSSTTSCCCCBCCTTCSSCEEEECCCSSTTCSSSCEEEEESSTTTEEEE
T ss_pred -----ccEEEEEEeCCHHHHHHHHHHHHhcCcccccCCCCCCCCCCCCCceeEeccccCCCcceeecCCCCCCCCeEEEE
Confidence 3347899999888999999999975544443 1244677766555554443333322222234466788888
Q ss_pred eccCCCHHHHHHHHHHHHHhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~ 316 (324)
-| -.+-+...-.+..++.++
T Consensus 389 ~~-~~~~~~~~~~~~~~~~~~ 408 (409)
T 3jzl_A 389 QG-GLTYEHIKIAVTRAIQKI 408 (409)
T ss_dssp EC-CSSHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHhh
Confidence 88 777777666666666654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=228.33 Aligned_cols=295 Identities=18% Similarity=0.202 Sum_probs=221.1
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHH-------hhhcCcccceeEEEecC-----CCHHHHHHhhhc--CCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALL-------THFFPRACNITTTFVDI-----SDHEMVNSAIVQ--GRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~-------~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~--~~~~~ 66 (324)
+|+..++.++++|||+|++++ |.|+.+...+ ...+.. .|+++.+++. .|++++++++ + +++++
T Consensus 102 ~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~-~G~~~~~v~~~~~g~~D~e~l~~~l-~~~~~tkl 179 (427)
T 3i16_A 102 HALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVL-KEDESITL 179 (427)
T ss_dssp HHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGG-GTCEEEECCCCTTSSCCHHHHHHHH-HTCTTEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHH-cCCEEEEecCccCCCcCHHHHHHHh-hCCCCCEE
Confidence 578888999999999999999 9999888665 123333 7999999987 4999999999 5 78999
Q ss_pred EEEec----CCCCcccccChHHHHHHHHh--cCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 67 LYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 67 v~~~~----~~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|++++ |+||+|.+.|+++|+++|++ +|+++++|++|+.+. ..+...++|++++|+||++++++...+||+++
T Consensus 180 V~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~ 259 (427)
T 3i16_A 180 VHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAG 259 (427)
T ss_dssp EEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred EEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEE
Confidence 99999 99999999999999999999 999999999995543 56777899999999999999877444799999
Q ss_pred ChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 139 PANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 139 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
++++++.++.... +.+...+++. ..++++++++..+..+++++.+++.++.++|+++|.++ +|. ++++.
T Consensus 260 ~~~li~~l~~~~~~~~~g~~~~~~~--~~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~----- 330 (427)
T 3i16_A 260 TKDCIEKTSYRLTVPGIGGECGSTF--GVVRSMYQGLFLAPHISMEALKGAILCSRIMELAGFEV-MPK-YDEKR----- 330 (427)
T ss_dssp CHHHHHHHHHHHSCTTTGGGCCCCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC-----
T ss_pred CHHHHHHHHHhcccCccCccCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCC-----
Confidence 9999999987432 1111112111 12455666777788899999999999999999999977 676 44443
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccc----cccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA----VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
+.-+++|.+++.+.+.+|++.++...+.+.+. ....|++.-+.+.+-.+.+..+.+.....++.+.++
T Consensus 331 --------~~~i~~i~l~~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 402 (427)
T 3i16_A 331 --------SDIIQSIKFNDKDKLIEFCKGIQTGSPIDSFVSCEPWDMPGYTDQVIMAAGAFIQGSSIELSADAPIREPYI 402 (427)
T ss_dssp --------SSSCEEEECSSHHHHHHHHHHHHHTCSSSTTSCCCCBCC---CCCEEEEECCSSTTCSSSSEEEEESCTTCE
T ss_pred --------ccEEEEEEECCHHHHHHHHHHHhhcCcccccccCcCCCCCCCCCceeeccCcCCCCccccccCCCCCCCCeE
Confidence 23388999998889999999999755444421 244666655555544443333322222234566788
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...-| -.+-+...-.+..++.++
T Consensus 403 ~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 403 AYLQG-GLTFDHAKIGILIALSRI 425 (427)
T ss_dssp EEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred EEEcC-CccHHHHHHHHHHHHHHH
Confidence 88888 777777767777777665
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=227.94 Aligned_cols=295 Identities=20% Similarity=0.226 Sum_probs=220.1
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh-------hhcCcccceeEEEecC----CCHHHHHHhhhc--CCceEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT-------HFFPRACNITTTFVDI----SDHEMVNSAIVQ--GRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~-------~~~~~~~g~~~~~~~~----~d~~~l~~~l~~--~~~~~v 67 (324)
+|+..++.++++|||+|++++ |.|+++...+. ..... .|+++..++. .|++++++++ + +++|+|
T Consensus 103 ~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~-~G~~~~~v~~~~~~~d~e~l~~~i-~~~~~tklV 180 (427)
T 3hvy_A 103 HAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE-YGVKYKMVDLKDGKVDINTVKEEL-KKDDSIKLI 180 (427)
T ss_dssp HHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGG-GTCEEEECCCBTTBCCHHHHHHHH-HHCTTEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHH-cCCEEEEecCCCCCcCHHHHHHHh-hCCCCCEEE
Confidence 578888999999999999999 99998875551 22333 7999999987 6999999999 5 799999
Q ss_pred EEec----CCCCcccccChHHHHHHHHh--cCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 68 YFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 68 ~~~~----~~nptG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
++++ |+||||.+.|+++|+++|++ +|+++++|++|+.+ ...|...++|++++|+||++++++...||+++++
T Consensus 181 ~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~ 260 (427)
T 3hvy_A 181 HIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK 260 (427)
T ss_dssp EEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred EEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEEC
Confidence 9999 99999999999999999999 89999999999554 3577778999999999999998765547999999
Q ss_pred hhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 140 ANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 140 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++.++.... +.+...+.++. .+..+++++..++.++++..+++..+.++|+++|.++ +|. ++++.
T Consensus 261 ~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~~~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~------ 330 (427)
T 3hvy_A 261 EEYVTQATFRVTVPGIGGECGSTFG--VMRSLYEGLFMAPHVTIEAVKGAVFCARIMELAGFDV-LPK-YNDKR------ 330 (427)
T ss_dssp HHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC------
T ss_pred HHHHHHHHHHhhcCCcccccCCCHH--HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCC------
Confidence 999999987532 11112222222 2455566667778889999999999999999999977 576 44433
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccc----cccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA----VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
+..+++|.+++.+.+.+|++.++...+.+.+. -.+.|+++.+++.+-.+.+..+.+.....++.+.++.
T Consensus 331 -------~~li~~~~l~~~~~~~~f~~~l~~~~~~~s~~~p~~~~~~Gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 403 (427)
T 3hvy_A 331 -------TDIIQAIKFNDEKKLIDFIKGIQTASPVDSFVQCEAWDMPGYEDKVIMAAGTFVQGASIELSADAPIREPYIG 403 (427)
T ss_dssp -------SSSEEEEECSSHHHHHHHHHHHHHTCSSSTTCCC----------CEEEECCCSSTTCSSSSEEEEESCTTCEE
T ss_pred -------ceEEEEEeCCCHHHHHHHHHHhccccccccccCCCCCCCCCCcCceeeeccccCCCccccccCCCCCCCCeeE
Confidence 34488999998889999999999755444431 2567777766666555433333332223345678899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..-| -.+-+...-.+..++.++
T Consensus 404 ~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 404 YLQG-GLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHTT
T ss_pred EEcC-CccHHHHHHHHHHHHHHh
Confidence 9888 777777766777776654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=226.81 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=165.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 102 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~N 175 (385)
T 1b5p_A 102 QALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVEVETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNN 175 (385)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTTCCCHHHHHTTC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeecCcccCCCCCHHHHHHhc-CCCCEEEEEeCCCC
Confidence 57889999999999999999999999988774 267787777652 789999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|||.+++ +++|+++|+++|+++|+||+|+.+... .... +.+++++|+||+++++|+|+ ||+++++++++
T Consensus 176 PtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~ 254 (385)
T 1b5p_A 176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRI-GYACGPKEVIK 254 (385)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCC-EEEECCHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccce-EEEEeCHHHHH
Confidence 9999976 889999999999999999999665432 1222 67899999999999899997 99999999998
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSER----IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
.+...... ...+.+.+.+.++..++.. ..+++...+++.++++.+.+.|++.+..+..|.
T Consensus 255 ~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 318 (385)
T 1b5p_A 255 AMASVSRQ-STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS--------------- 318 (385)
T ss_dssp HHHHHHHT-TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS---------------
T ss_pred HHHHHHhh-ccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC---------------
Confidence 88876541 1122233333333334432 233556667788899999999998766554343
Q ss_pred cCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 221 KEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
++.++++.++. ..+..++.+.+.
T Consensus 319 ----~~~~~~~~~~~~~~~~~~l~~~l~ 342 (385)
T 1b5p_A 319 ----GAFYVLMDTSPIAPDEVRAAERLL 342 (385)
T ss_dssp ----BTTEEEEECTTTCSSHHHHHHHHH
T ss_pred ----eeEEEEEecCCCCCCHHHHHHHHH
Confidence 45677888851 123455666665
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=218.33 Aligned_cols=253 Identities=14% Similarity=0.206 Sum_probs=186.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++.+++.+ |++++++++.+ +++++|++++|+||
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~np 153 (354)
T 3ly1_A 79 EGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-----IAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNP 153 (354)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTT
T ss_pred HHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-----HcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCC
Confidence 57888999999999999999999999988774 378888888876 89999999932 78999999999999
Q ss_pred cccccChHHHHHHHHh--cCCEEEEcCCCCcCCCCc-----c----CC-CCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----RL-GADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~--~~~~~ivD~~~~~~~~~~-----~----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+.+++.++++. +|+++|+|++|+++.... . .. +.+++++|+||+++++|.|+ ||++.++++.
T Consensus 154 tG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~ 232 (354)
T 3ly1_A 154 TGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRV-GYAVAHPTVI 232 (354)
T ss_dssp TCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCC-EEEECCHHHH
T ss_pred cCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhh-eeeecCHHHH
Confidence 9999998888888777 999999999996654321 1 22 67799999999999889997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+.+...... ...+.+.+.++..++.....+....+++.++++++.+.|++.+..+. |.
T Consensus 233 ~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~------------------ 290 (354)
T 3ly1_A 233 ALMGRYVAG---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLKLPYL-PS------------------ 290 (354)
T ss_dssp HHHGGGTTC---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC------------------
T ss_pred HHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEC-CC------------------
Confidence 888776551 22222333333334443344666777789999999999998866543 33
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.|.++++.++. +...+.+.+.. .|+ .++ |.+. + .++++|+|++ . +
T Consensus 291 -~~~~~~~~~~~--~~~~~~~~l~~---~gi-~v~-g~~~----------------------~-~~~~iRis~~-~---~ 335 (354)
T 3ly1_A 291 -EGNFVFHQLVV--PLKDYQTHMAD---AGV-LIG-RAFP----------------------P-ADNWCRISLG-T---P 335 (354)
T ss_dssp -CSSEEEEECSS--CHHHHHHHHHH---TTE-ECC-CCCT----------------------T-CTTEEEEECC-C---H
T ss_pred -CceEEEEECCC--CHHHHHHHHHH---CCE-EEe-ecCC----------------------C-CCCEEEEEcC-C---H
Confidence 46788999974 34556666653 343 223 3210 1 2589999998 3 3
Q ss_pred HHHHHHHHHHHhhh
Q 020548 304 QRWSQFEKALSRMQ 317 (324)
Q Consensus 304 ~~~~~l~~~l~~~~ 317 (324)
++++.+.++|+.+-
T Consensus 336 ~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 336 QEMQWVADTMREFR 349 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666665553
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-29 Score=226.30 Aligned_cols=220 Identities=17% Similarity=0.193 Sum_probs=164.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc---C--CceEEE-Eec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ---G--RTKVLY-FES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~---~--~~~~v~-~~~ 71 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |+++|++++.. + ++++|+ +++
T Consensus 151 ~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~ 225 (448)
T 3aow_A 151 QALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-----FYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPT 225 (448)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCC
Confidence 57888999999999999999999999998874 267777776652 89999999930 4 899985 588
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC---CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR---LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~---~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+. ... .+.++++.|+||+++ +|+|+ ||++++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~Glri-G~v~~~ 303 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRI-GWMVGD 303 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCC-EEEEEC
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccE-EEEEeC
Confidence 9999999986 568999999999999999999665421 112 257899999999998 89997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhC---CCceeCCCCCCCchhH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~p~~~~~~~~~ 213 (324)
+++++.+...... ...+++.+.+.++..++... .++....+++.++++.+.+.|++. +..+..|.
T Consensus 304 ~~l~~~l~~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~-------- 374 (448)
T 3aow_A 304 PGIIRKMEIAKQS-TDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPE-------- 374 (448)
T ss_dssp HHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCS--------
T ss_pred HHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCC--------
Confidence 9999988776542 22333444444444444432 234455666788999999999874 34554444
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|.++|+.++...+...+.+.+..
T Consensus 375 -----------~g~~~~v~~~~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 375 -----------GGMFIWVTLPDGIDSKKMLERAIK 398 (448)
T ss_dssp -----------BSSEEEEECSTTCCHHHHHHHHHH
T ss_pred -----------ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999743345567666654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=218.91 Aligned_cols=218 Identities=19% Similarity=0.196 Sum_probs=161.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 92 ~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n 165 (375)
T 3op7_A 92 GANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-----SLGAEVDLWQIEEENGWLPDLEKLRQLI-RPTTKMICINNANN 165 (375)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHHHC-CTTCCEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccCCCCCCHHHHHHhh-ccCCeEEEEcCCCC
Confidence 57888999999999999999999999888774 267777776643 899999999 78999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|||.+.| +++|+++|+++|+++|+|++|+.+...+. ..+.+++++|+||.++++|.|+ ||+++++++++.+
T Consensus 166 ptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~v~~~~~l~~~~ 244 (375)
T 3op7_A 166 PTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRI-GWVAANHQVTDIL 244 (375)
T ss_dssp TTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCC-EEEECCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccce-EEEEeCHHHHHHH
Confidence 9999998 99999999999999999999966554321 1267799999999999889997 9999999999998
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ....++.+.+..+...+..... ++...+++.++++.+.+.|++.+. .+..|.
T Consensus 245 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------- 304 (375)
T 3op7_A 245 RDYRDY-TMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPA------------------- 304 (375)
T ss_dssp TTTGGG-TTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS-------------------
T ss_pred HHHHhh-hccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC-------------------
Confidence 776551 1122222222223223332222 334445568889999999998643 444343
Q ss_pred cceEEEEEeCCHHHHHHHHHHh
Q 020548 225 FGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l 246 (324)
+|.++++.++.......+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l 326 (375)
T 3op7_A 305 VVSTSFVKIAVDMPMEDFCLQL 326 (375)
T ss_dssp SSSCEEEEECCSSCHHHHHHHH
T ss_pred CeEEEeEEcCCCCCHHHHHHHH
Confidence 4556677776333345565554
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=221.12 Aligned_cols=252 Identities=13% Similarity=0.205 Sum_probs=187.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+|||
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~npt 166 (365)
T 3get_A 93 QVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-----QCGAKCYKTQSITHNLDEFKKLYETH-KDEIKLIFLCLPNNPL 166 (365)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----HHTCEEEECSSSSCCHHHHHHHHHHT-TTTEEEEEEESSCTTT
T ss_pred HHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecCCCCCCCHHHHHHHh-CCCCCEEEEcCCCCCC
Confidence 57888899999999999999999999988774 36888888886 4789999999 7899999999999999
Q ss_pred ccccChHHHHHHHH--hcCCEEEEcCCCCcCC---C-----Ccc----CCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 77 LAVANIPELSRLAH--DKGVTVVVDNTFSPLV---L-----SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 77 G~~~~~~~i~~l~~--~~~~~~ivD~~~~~~~---~-----~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|.+.|.+++.++++ ++|+++|+|++|+.+. . +.. ..+.+++++|+||+++++|.|+ ||++.++++
T Consensus 167 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~ 245 (365)
T 3get_A 167 GECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRI-GYGIANANI 245 (365)
T ss_dssp CCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCC-EEEEECHHH
T ss_pred CCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchhe-EEEEcCHHH
Confidence 99999888888887 6799999999996443 1 111 1267899999999999899997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+.+...... +..+.+.+..+..++....++....+++.++++++.+.|++++..+. |.
T Consensus 246 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~----------------- 304 (365)
T 3get_A 246 ISAFYKLRAP---FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKHNIKII-DS----------------- 304 (365)
T ss_dssp HHHHHHHSCT---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-CC-----------------
T ss_pred HHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEC-CC-----------------
Confidence 9999877652 22233333344444544444667777889999999999999876653 33
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|+++++.++.. +...+.+.+.. .|+ .++.| .. ++ ++++|+|++ .
T Consensus 305 --~~~~~~~~~~~~-~~~~~~~~l~~---~gi-~v~~g----------~~------------~~--~~~iRis~~-~--- 349 (365)
T 3get_A 305 --YTNFITYFFDEK-NSTDLSEKLLK---KGI-IIRNL----------KS------------YG--LNAIRITIG-T--- 349 (365)
T ss_dssp --SSSEEEEECSSS-CHHHHHHHHHT---TTE-ECEEC----------GG------------GT--CSEEEEECC-C---
T ss_pred --CCeEEEEECCCC-CHHHHHHHHHH---CCE-EEEEC----------cc------------CC--CCEEEEEcC-C---
Confidence 466889999743 45667777764 233 22222 11 12 488999999 2
Q ss_pred HHHHHHHHHHHHhh
Q 020548 303 DQRWSQFEKALSRM 316 (324)
Q Consensus 303 ~~~~~~l~~~l~~~ 316 (324)
+++++.+.++|+.+
T Consensus 350 ~~~i~~l~~~l~~~ 363 (365)
T 3get_A 350 SYENEKFFTEFDKI 363 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=216.66 Aligned_cols=212 Identities=17% Similarity=0.214 Sum_probs=162.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++ .|++++++++ ++++++|++++|+||||.+.+
T Consensus 100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~-~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~ 172 (370)
T 2z61_A 100 LGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-----FLGAKPVFCD-FTVESLEEAL-SDKTKAIIINSPSNPLGEVID 172 (370)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEEC-SSHHHHHHHC-CSSEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeC-CCHHHHHHhc-ccCceEEEEcCCCCCcCcccC
Confidence 57888888889999999999999999988774 3688888887 7899999999 778999999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccC----CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.+ |.++|+++|+++|+||+|+.+.. +... .++|++++|+||+++++|.|+ ||+++++++++.+.....
T Consensus 173 ~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~- 249 (370)
T 2z61_A 173 RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRI-GYVISNDEIIEAILKLQQ- 249 (370)
T ss_dssp HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHH-
T ss_pred HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceE-EEEEECHHHHHHHHHHHh-
Confidence 99 99999999999999999965532 1222 267999999999998889997 999999999998877655
Q ss_pred hhhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 153 ALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
....+.+......+...++ +++...+++.++++.+.+.|++.+.++..|. .|.
T Consensus 250 ---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~ 307 (370)
T 2z61_A 250 ---NLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPI-------------------GAY 307 (370)
T ss_dssp ---HHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-------------------BTT
T ss_pred ---hcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-------------------cce
Confidence 2222233333222222232 2445566678899999999998865544333 466
Q ss_pred EEEEEeCCHHHHHHHHHHhh
Q 020548 228 LLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~ 247 (324)
++++.++. +...+.+.+.
T Consensus 308 ~~~~~~~~--~~~~~~~~l~ 325 (370)
T 2z61_A 308 YVFPNIGE--DGREFAYKLL 325 (370)
T ss_dssp EECCBCSS--CHHHHHHHHH
T ss_pred EEEEecCC--CHHHHHHHHH
Confidence 77888864 3455666654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=214.59 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=185.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 95 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~npt 168 (363)
T 3ffh_A 95 ELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-----IEGAEVREIPLLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPT 168 (363)
T ss_dssp HHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-----HHTCEEEEEECCTTSCCCHHHHHHHC-CTTEEEEEEESSCTTT
T ss_pred HHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCCCCCCcCHHHHHHhc-ccCCCEEEEeCCCCCc
Confidence 57888888889999999999999999988774 368888888876 999999999 7899999999999999
Q ss_pred ccccChHHHHHHHHhc--CCEEEEcCCCCcCCC----Ccc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDK--GVTVVVDNTFSPLVL----SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~--~~~~ivD~~~~~~~~----~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|.+.|.+++.++++.+ |+++|+|++|+++.. ... ..+.++++.|+||+++++|.|+ ||++.++++++.+
T Consensus 169 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l 247 (363)
T 3ffh_A 169 GNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARV-GYGIADKEIIRQL 247 (363)
T ss_dssp CCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCC-EEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhce-eeeecCHHHHHHH
Confidence 9999999999998887 999999999965432 111 1256799999999999899997 9999999999998
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh-CCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK-LGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
...... +..+.+.+..+..++....++....+++.++++++.+.|++ .+..+. |. .
T Consensus 248 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~-------------------~ 304 (363)
T 3ffh_A 248 NIVRPP---FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PA-------------------N 304 (363)
T ss_dssp HHTCCS---CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CC-------------------C
T ss_pred HHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CC-------------------C
Confidence 876551 22222333333334444345667777789999999999999 555543 33 4
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++++.++. +...+.+.+.. .|+ .++.|.. ++. ++++|+|++ ++++
T Consensus 305 ~~~~~~~~~~--~~~~~~~~l~~---~gi-~v~~g~~----------------------~~~-~~~iRis~~----~~~~ 351 (363)
T 3ffh_A 305 GNFVLIDLGI--EAGTIFSYLEK---NGY-ITRSGAA----------------------LGF-PTAVRITIG----KEED 351 (363)
T ss_dssp SSEEEEECSS--CHHHHHHHHHH---TTE-ECEETTT----------------------TTC-TTEEEEECC----CHHH
T ss_pred CeEEEEECCC--CHHHHHHHHHH---CCe-EEEeCcc----------------------CCC-CCeEEEECC----CHHH
Confidence 6788999974 34556666653 233 2222211 122 579999998 3344
Q ss_pred HHHHHHHHHh
Q 020548 306 WSQFEKALSR 315 (324)
Q Consensus 306 ~~~l~~~l~~ 315 (324)
++.+.++|++
T Consensus 352 i~~~~~~l~~ 361 (363)
T 3ffh_A 352 NSAVIALLEK 361 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556555544
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=216.14 Aligned_cols=215 Identities=19% Similarity=0.216 Sum_probs=162.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~n 185 (389)
T 1o4s_A 112 QALFNAFMALLDPGDEVIVFSPVWVSYIPQII-----LAGGTVNVVETFMSKNFQPSLEEVEGLL-VGKTKAVLINSPNN 185 (389)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECCGGGTTCCCHHHHHHTC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecCCccCCCCCHHHHHHhc-ccCceEEEEcCCCC
Confidence 57888888889999999999999999988774 267777777653 789999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... ... .++|++++|+||+++++|.|+ ||+++++++
T Consensus 186 ptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~l~~~~~~ 264 (389)
T 1o4s_A 186 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV-GYLISSEKV 264 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC-EEEECCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce-EEEEeCHHH
Confidence 9999977 889999999999999999999655431 111 368999999999998889997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
++.+.....+ .....+.+.+..+..++... ++...+++.++++.+.+.|++.+.++..|.
T Consensus 265 ~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 324 (389)
T 1o4s_A 265 ATAVSKIQSH-TTSCINTVAQYAALKALEVD--NSYMVQTFKERKNFVVERLKKMGVKFVEPE----------------- 324 (389)
T ss_dssp HHHHHHHHHH-HTCSCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHTTCCCCCCS-----------------
T ss_pred HHHHHHHhhh-cccCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhcCCeeecCC-----------------
Confidence 9888776542 11222223333333333322 556677788999999999999865544332
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++++.++ .+..++.+.+.
T Consensus 325 --~~~~~~~~~~--~~~~~l~~~l~ 345 (389)
T 1o4s_A 325 --GAFYLFFKVR--GDDVKFCERLL 345 (389)
T ss_dssp --BSSEEEEECS--SCHHHHHHHHH
T ss_pred --cceEEEEeCC--CCHHHHHHHHH
Confidence 4667788885 22445655553
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=215.46 Aligned_cols=262 Identities=15% Similarity=0.115 Sum_probs=187.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC---CceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG---RTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~ 78 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++..|++++++++.+. ++++|++++++||||.
T Consensus 114 ~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~-----~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~ 188 (398)
T 3a2b_A 114 QSNLGPLSCLMGRNDYILLDERDHASIIDGSR-----LSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGD 188 (398)
T ss_dssp HHHHHHHHHSSCTTCEEEEETTCCHHHHHHHH-----HSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCC
T ss_pred HHHHHHHHHHhCCCCEEEECCccCHHHHHHHH-----HcCCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 57888999999999999999999999988874 368889999888999999999332 7999999999999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcCCC-----CccC---C--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR---L--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~---~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+.++++|.++|+++|+++|+||+|+.+.. ...+ . ++|++++|+||+++++| ||+++++++++.+..
T Consensus 189 ~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~~~~~~~l~~ 264 (398)
T 3a2b_A 189 IVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG----GFVAGDADVIDFLKH 264 (398)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC----EEEEECHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC----cEEEeCHHHHHHHHH
Confidence 99999999999999999999999954422 1111 1 25899999999998764 999999999988877
Q ss_pred hhhhhhhccCCCCCHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 149 LHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
..........+++.+.+++ .++....++....+++.++++++.+.|++.+.++..| .|+
T Consensus 265 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~g~ 324 (398)
T 3a2b_A 265 NARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--------------------ESP 324 (398)
T ss_dssp HCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--------------------CSS
T ss_pred hcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--------------------CCC
Confidence 4321111223333333222 2333222233566778899999999999986654322 367
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHH
Q 020548 228 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 307 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~ 307 (324)
++++.++...+...+.+.+.. .|+ .+..|.. +.. +..++++|+|++ ...+++.++
T Consensus 325 ~~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~------~~~--------------~~~~~~iRis~~-~~~~~e~i~ 379 (398)
T 3a2b_A 325 ILPIFIRSNEKTFWVTKMLQD---DGV-FVNPVVS------PAV--------------PAEESLIRFSLM-ATHTYDQID 379 (398)
T ss_dssp EEEEECCCHHHHHHHHHHHHH---TTE-ECEEECT------TTS--------------CGGGCEEEEECC-TTCCHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHH---CCc-EEEeeCC------CCC--------------CCCCceEEEEEe-CCCCHHHHH
Confidence 999999865567778777764 243 2121211 000 012478999999 765666666
Q ss_pred HHHHHHHhhh
Q 020548 308 QFEKALSRMQ 317 (324)
Q Consensus 308 ~l~~~l~~~~ 317 (324)
.+.++|+.+-
T Consensus 380 ~~~~~l~~~l 389 (398)
T 3a2b_A 380 EAIEKMVKVF 389 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=213.62 Aligned_cols=250 Identities=16% Similarity=0.187 Sum_probs=177.6
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++| |+|+++.|+|+++...++ ..|.++..++. .|++++++++ + ++++|++++|+||
T Consensus 86 ~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~-~~~~v~l~~p~np 158 (356)
T 1fg7_A 86 EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTVPTLDNWQLDLQGISDKL-D-GVKVVYVCSPNNP 158 (356)
T ss_dssp HHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEECCCCTTSCCCHHHHHTSC-T-TEEEEEEESSCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeeCCCCCCCCHHHHHHHh-c-CCCEEEEeCCCCC
Confidence 57888899999999 999999999999998874 26778777765 2789999988 6 8999999999999
Q ss_pred cccccChHH---HHHHHHhcCCEEEEcCCCCcCC--CCcc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 76 TLAVANIPE---LSRLAHDKGVTVVVDNTFSPLV--LSPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 76 tG~~~~~~~---i~~l~~~~~~~~ivD~~~~~~~--~~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
||.+.+.++ |+++|+ +|+++|+||+|..+. .+.. ..+.++++.|+||+||++|.|+ ||+++++++++.+
T Consensus 159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l 236 (356)
T 1fg7_A 159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRC-GFTLANEEVINLL 236 (356)
T ss_dssp TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCC-EEEEECHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhh-EEEEeCHHHHHHH
Confidence 999987554 455566 899999999996554 1211 2367899999999999899997 9999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
...... +..+.+.+.++..++..... ++...+++.++++++.+.|++.+. ....|.
T Consensus 237 ~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------ 295 (356)
T 1fg7_A 237 MKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS------------------ 295 (356)
T ss_dssp HHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC------------------
T ss_pred HHhcCC---CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC------------------
Confidence 876551 22222333233333332222 556667778999999999999863 222343
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhcccccccccccc-CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|++++++++ +...+.+.+.. .|+.. .. |.. ++. ++++|+|++ .
T Consensus 296 -~~~~~~~~~~---~~~~l~~~L~~---~gI~v-~~~g~~----------------------~~~-~~~iRis~~-~--- 340 (356)
T 1fg7_A 296 -ETNYILARFK---ASSAVFKSLWD---QGIIL-RDQNKQ----------------------PSL-SGCLRITVG-T--- 340 (356)
T ss_dssp -SSSEEEEEET---THHHHHHHHHH---TTEEC-EECTTS----------------------TTC-TTEEEEECC-C---
T ss_pred -CCeEEEEECC---CHHHHHHHHHH---CCEEE-EECCCC----------------------CCC-CCeEEEEeC-C---
Confidence 5778899996 24556666653 34311 11 211 122 368999999 3
Q ss_pred HHHHHHHHHHHHhh
Q 020548 303 DQRWSQFEKALSRM 316 (324)
Q Consensus 303 ~~~~~~l~~~l~~~ 316 (324)
.++++.+.++|+.+
T Consensus 341 ~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 341 REESQRVIDALRAE 354 (356)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 45566776666543
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=218.73 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=162.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 98 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~n 171 (389)
T 1gd9_A 98 QAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPVEVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPCN 171 (389)
T ss_dssp HHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEEEEECCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEeccCCccCCCCCHHHHHHhc-CcCceEEEEECCCC
Confidence 57888888889999999999999999988774 257777776642 789999999 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|+.+... ... .++|++++|+||+++++|.|+ ||++++++
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~ 250 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAPSW 250 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECCHH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce-EEEEECHH
Confidence 9999974 889999999999999999999655431 122 257899999999999889997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
+++.+.....+ .....+.+.+.++..++.... .++...+++.++++.+.+.|++.+.++..|.
T Consensus 251 ~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------- 316 (389)
T 1gd9_A 251 IIERMVKFQMY-NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK------------- 316 (389)
T ss_dssp HHHHHHHHHTT-TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-------------
T ss_pred HHHHHHHHHhh-hccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-------------
Confidence 99988876541 112222233333333443322 3455666778999999999999866544332
Q ss_pred hccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 219 ANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.|.++++.++. ..+...+.+.+.
T Consensus 317 ------~~~~~~~~~~~~~~~~~~~~~~l~ 340 (389)
T 1gd9_A 317 ------GAFYIFPRIRDTGLTSKKFSELML 340 (389)
T ss_dssp ------BTTEECCBCGGGTCCHHHHHHHHH
T ss_pred ------eeeEEEEeccCCCCCHHHHHHHHH
Confidence 45567878752 123456666654
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=217.91 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=165.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+||
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~np 175 (386)
T 1u08_A 102 EALYAAITALVRNGDEVICFDPSYDSYAPAIA-----LSGGIVKRMALQPPHFRVDWQEFAALL-SERTRLVILNTPHNP 175 (386)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeecCcccCcCCHHHHHHhh-cccCEEEEEeCCCCC
Confidence 57888888889999999999999999988774 26777777764 3799999999 788999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-C----CCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+.+. +. . .++|++++|+||+++++|.|+ ||+++++++
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~ 254 (386)
T 1u08_A 176 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPI 254 (386)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccce-EEEEcCHHH
Confidence 999985 689999999999999999999664321 11 1 368999999999999889997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
++.+...... .....+.+.+.++..++.. ..+++...+++.++++.+.+.|++.+..+..|.
T Consensus 255 ~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------- 317 (386)
T 1u08_A 255 SAEIRKVHQY-LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCE---------------- 317 (386)
T ss_dssp HHHHHHHHHH-HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC----------------
T ss_pred HHHHHHHHHh-hccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC----------------
Confidence 9888776541 1123333333333333432 233556667778999999999998876654333
Q ss_pred CCCcceEEEEEeCCH--HHHHHHHHHhh
Q 020548 222 EYGFGGLLCLDMETE--EKANRLMNYLQ 247 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~--~~~~~~~~~l~ 247 (324)
.|.++++.++.. .+...+.+.+.
T Consensus 318 ---~g~~~~~~~~~~~~~~~~~~~~~l~ 342 (386)
T 1u08_A 318 ---GTYFLLVDYSAVSTLDDVEFCQWLT 342 (386)
T ss_dssp ---BSSEEEEECTTTCCSCHHHHHHHHH
T ss_pred ---ceEEEEEecCCCCCCCHHHHHHHHH
Confidence 467899998742 23455666543
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=219.97 Aligned_cols=219 Identities=16% Similarity=0.204 Sum_probs=165.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++
T Consensus 112 ~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~ 185 (429)
T 1yiz_A 112 EALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-NEKTKM 185 (429)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHC-CTTEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCcccccccccccCcccCHHHHHHHh-ccCceE
Confidence 57888899989999999999999999988774 25666666553 3799999999 788999
Q ss_pred EEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc-----CCCCcEEEeCCccccccCCCeeE
Q 020548 67 LYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA-----RLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 67 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~-----~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
|++++|+||||.+.+ +++|+++|+++|+++|+||+|+++... +. ..++|+++.|+||+++++|.|+
T Consensus 186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~- 264 (429)
T 1yiz_A 186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI- 264 (429)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcce-
Confidence 999999999999985 889999999999999999999654321 11 2367999999999999889997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--------IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
||+++++++++.+..... ...+.++.+.+.++..++.. ...+....+++.++++.+.+.|++.+..+..|.
T Consensus 265 G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 343 (429)
T 1yiz_A 265 GWAYGPEALLKNLQMVHQ-NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ 343 (429)
T ss_dssp EEEESCHHHHHHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEeCHHHHHHHHHHHh-hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 999999999988876544 11233333444333334433 233556667788999999999998876655443
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCH------------HHHHHHHHHhh
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETE------------EKANRLMNYLQ 247 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~------------~~~~~~~~~l~ 247 (324)
.|.+++++++.. .+...+.+.+.
T Consensus 344 -------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (429)
T 1yiz_A 344 -------------------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT 378 (429)
T ss_dssp -------------------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHH
T ss_pred -------------------cceEEEEEcccccccccccccccCCCHHHHHHHHH
Confidence 567899998742 24556666653
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=217.18 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=161.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |+++++++ ++++|++++|+|
T Consensus 102 ~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~----~~~~v~i~~p~n 172 (391)
T 3h14_A 102 GGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-----ALGLVPVDLPTAPENRLQPVPADFAGL----DLAGLMVASPAN 172 (391)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEECCGGGTTSCCHHHHTTS----CCSEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeecCcccCCCCCHHHHHhc----CCeEEEECCCCC
Confidence 57888999999999999999999999998874 368888887764 77777654 789999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
|||.+.+ +++|+++|+++|+++|+||+|+.+... .... +.+++++|+||.+|++|.|+ ||++.++++.+.
T Consensus 173 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~ 251 (391)
T 3h14_A 173 PTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRV-GWMVVPEDQVRV 251 (391)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCC-EEEECCGGGHHH
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcccee-EEEEeCHHHHHH
Confidence 9999987 889999999999999999999665432 1222 57799999999999899997 999999999998
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccCCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+...... .....+.+.+.++...+.....+....+++.++++.+.+.|++.+... ..|.
T Consensus 252 ~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------- 311 (391)
T 3h14_A 252 VERIAQN-MFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTRIAPPD------------------- 311 (391)
T ss_dssp HHHHHHH-TTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCC-------------------
T ss_pred HHHHHhh-hccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-------------------
Confidence 8776551 111222222223323344334466677778999999999999887633 2232
Q ss_pred cceEEEEEeCC-HHHHHHHHHHhh
Q 020548 225 FGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 225 ~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.+.++++.++. ..+...+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~ 335 (391)
T 3h14_A 312 GAFYVYADVSDLTDDSRAFAAEIL 335 (391)
T ss_dssp BTTEEEEECTTTCSCHHHHHHHHH
T ss_pred eeEEEEEecCccCCCHHHHHHHHH
Confidence 45678888863 234556666643
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=221.40 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=159.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|+++|++++ ++++
T Consensus 129 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~ 202 (447)
T 3b46_A 129 EGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-----LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI-TSKT 202 (447)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTC-CTTE
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeCCCccccccccccccCcccCHHHHHHhh-ccCC
Confidence 57888999999999999999999999988774 25666555542 3799999999 7889
Q ss_pred eEEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC-----CCCcEEEeCCccccccCCCe
Q 020548 65 KVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-----LGADVVVHSISKFISGGADI 131 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~-----~~~d~~~~S~sK~~~~~g~r 131 (324)
++|++++|+||||.+. ++++|+++|+++|+++|+||+|..+.+. ... .++++++.|+||+++++|+|
T Consensus 203 ~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 282 (447)
T 3b46_A 203 KAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWR 282 (447)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSC
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchh
Confidence 9999999999999996 5889999999999999999999665431 111 26899999999999989999
Q ss_pred eEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 132 IAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 132 ~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
+ ||+++ ++++++.+..... ...++++.+.+.++..++... .+++...+++.++++.+.+.|++.+..+..|.
T Consensus 283 i-G~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 358 (447)
T 3b46_A 283 I-GWVLSLNAELLSYAAKAHT-RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPE-- 358 (447)
T ss_dssp C-EEEECSCHHHHHHHHHHHH-HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCS--
T ss_pred h-EEEEeCCHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC--
Confidence 7 99999 9999988876544 112333444443433344322 23555667789999999999998877665454
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
+|.++|+.++.
T Consensus 359 -----------------~g~~~~~~~~~ 369 (447)
T 3b46_A 359 -----------------GTYFVLVDFSK 369 (447)
T ss_dssp -----------------BSSEEEEECTT
T ss_pred -----------------eeEEEEEeccc
Confidence 57788998863
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=218.57 Aligned_cols=207 Identities=20% Similarity=0.221 Sum_probs=153.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc-----------CCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ-----------GRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~-----------~~~~~ 66 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |+++|++++.+ +++++
T Consensus 119 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~ 193 (425)
T 2r2n_A 119 QGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-----PLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKF 193 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-----GGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceE
Confidence 57889999999999999999999999988873 367777777652 79999998831 46888
Q ss_pred EEE-ecCCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC------ccC---CCCcEEEeCCccccccCCCeeE
Q 020548 67 LYF-ESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PAR---LGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 67 v~~-~~~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~------~~~---~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
|++ ++||||||.+.+.+ +|+++|+++|+++|+||+|+.+.+. ... .+.+++++|+||+++ +|+|+
T Consensus 194 v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRi- 271 (425)
T 2r2n_A 194 LYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRI- 271 (425)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCC-
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-Cccce-
Confidence 877 68999999998755 9999999999999999999654321 111 246799999999997 89997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc------ccHHHHHHHHHHHHHHHHHHHHhC--CC-ceeCC
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI------PHLGLRMKEHCHRALIFARRMKKL--GL-KVLYP 204 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~p 204 (324)
||+++++++++.+...... ...+.+.+.+.++..++... .++....+++.++++.+.+.|++. +. .+..|
T Consensus 272 G~~~~~~~l~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p 350 (425)
T 2r2n_A 272 GFLTGPKPLIERVILHIQV-STLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP 350 (425)
T ss_dssp EEEEEEHHHHHHHHHHHHT-TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC
T ss_pred EEEecCHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC
Confidence 9999999999988876541 11222333333333333321 224445566788999999999884 43 33434
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
. +|.++|+.++.
T Consensus 351 ~-------------------~g~~~~~~~~~ 362 (425)
T 2r2n_A 351 A-------------------AGMFLWIKVKG 362 (425)
T ss_dssp S-------------------BSSEEEEEETT
T ss_pred C-------------------ceEEEEEEeCC
Confidence 3 67889999974
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=216.81 Aligned_cols=219 Identities=16% Similarity=0.210 Sum_probs=161.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~n 174 (388)
T 1j32_A 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVILPTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSN 174 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECCCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCEEEEecCCcccCCCCCHHHHHHhc-CcCceEEEEeCCCC
Confidence 57888999889999999999999999988774 267788777653 789999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... ... .++|+++.|+||+++++|.|+ ||+++++
T Consensus 175 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~ 253 (388)
T 1j32_A 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV-GFLAGPV 253 (388)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCC-EEEECCH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccce-EEEEeCH
Confidence 9999965 889999999999999999999665432 111 247899999999998899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+...... .....+.+.+.++...+.. ..+++...+++.++++.+.+.|++. +..+..|.
T Consensus 254 ~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------------- 319 (388)
T 1j32_A 254 PLVKAATKIQGH-STSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD------------- 319 (388)
T ss_dssp HHHHHHHHHHHT-TTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC-------------
T ss_pred HHHHHHHHHHhh-cccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC-------------
Confidence 998888776541 1122222333333333432 2335667777889999999999987 44443332
Q ss_pred hccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 219 ANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.+.++++.++. ..+...+.+.+.
T Consensus 320 ------~~~~~~~~~~~~~~~~~~~~~~l~ 343 (388)
T 1j32_A 320 ------GAFYMFPSIAKTGRSSLDFCSELL 343 (388)
T ss_dssp ------BTTEECCBCGGGTCCHHHHHHHHH
T ss_pred ------eeEEEEEecCCCCCCHHHHHHHHH
Confidence 35566666642 123455666654
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=217.13 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=162.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 110 ~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~l~~p~n 183 (412)
T 2x5d_A 110 EGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-----IAGAQVRSVPLVPGIDFFNELERAIRES-IPKPRMMILGFPSN 183 (412)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HHTCEEEEEECSTTSCHHHHHHHHHHTE-ESCCSEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeecCCccCCCCCHHHHHHhc-ccCceEEEECCCCC
Confidence 57888899889999999999999999988774 257777776653 468888888 67899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC------CccC----CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SPAR----LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~------~~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|+++|+++|+++|+||+|+.+.. +... .+++++++|+||+++++|.|+ ||++++++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~ 262 (412)
T 2x5d_A 184 PTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRI-GFMVGNPE 262 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCC-EEEEECHH
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccce-EEEEcCHH
Confidence 9999976 67899999999999999999965542 1122 257899999999998889997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+++.+...... ....++.+.+.++..++... .+++...+++.++++.+.+.|++.+..+..|.
T Consensus 263 ~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 326 (412)
T 2x5d_A 263 LVSALARIKSY-HDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPK--------------- 326 (412)
T ss_dssp HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCS---------------
T ss_pred HHHHHHHHHhh-hccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCC---------------
Confidence 99988876541 11223333333333344432 33566677788999999999998765543222
Q ss_pred cCCCcceEEEEEeCCHH---HHHHHHHHh
Q 020548 221 KEYGFGGLLCLDMETEE---KANRLMNYL 246 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~---~~~~~~~~l 246 (324)
.|.++++.++... +...+.+.+
T Consensus 327 ----~g~~~~~~~~~~~~~~~~~~~~~~l 351 (412)
T 2x5d_A 327 ----ASMYVWAKIPEPYAHLGSLEFAKKL 351 (412)
T ss_dssp ----BSSEEEEECCTTTGGGCHHHHHHHH
T ss_pred ----eeeEEEEEcCCccCCCCHHHHHHHH
Confidence 4667889986322 355666665
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=214.81 Aligned_cols=262 Identities=17% Similarity=0.176 Sum_probs=180.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|+..++++++++||+|+++.|+|+++...+. ...|.++..++.+ |++++++++.+ .++++|++
T Consensus 119 ~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l 194 (428)
T 1iay_A 119 GANETIIFCLADPGDAFLVPSPYYPAFNRDLR----WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT----TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCeEEEccCCCcchHHHHH----HhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEE
Confidence 57888889999999999999999999876431 2268888887652 78999998842 37999999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cCC--C-------Cc--EEEeCCccccccCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P-ARL--G-------AD--VVVHSISKFISGGA 129 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~~--~-------~d--~~~~S~sK~~~~~g 129 (324)
++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+. + ..+ + .| +++.|+||+||++|
T Consensus 195 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 195 TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 999999999998 899999999999999999999654321 1 111 1 45 99999999999899
Q ss_pred CeeEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 130 DIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 130 ~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
.|+ ||++. ++++++.+...... ..++.+.+.++..++.... .++...+++.++++++.+.|++.+..+..|
T Consensus 275 lr~-G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 350 (428)
T 1iay_A 275 FRV-GIIYSFNDDVVNCARKMSSF---GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN 350 (428)
T ss_dssp GCE-EEEEESCHHHHHHHHHHHTT---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred ceE-EEEEeCCHHHHHHHHHHHhc---ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 997 99988 67888888765431 2233344434333444332 234556667889999999999986654323
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCCH------HHHHHHHHHhhccccccccccccCCccceeccccccccCCCC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 278 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 278 (324)
. .|.++++.++.. .....+.+.+.. +.|+ .+ .|+..+.
T Consensus 351 ~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~gi-~v----------~~~~~~~---- 394 (428)
T 1iay_A 351 N-------------------AGLFCWMDLRPLLRESTFDSEMSLWRVIIN--DVKL-NV----------SPGSSFE---- 394 (428)
T ss_dssp S-------------------SSSEEEEECGGGCSSSSHHHHHHHHHHHHH--TSCE-EC----------EEGGGGT----
T ss_pred C-------------------eeEEEEEechhhcCCCchhHHHHHHHHHHH--hCCE-EE----------eCchhhC----
Confidence 2 477889998632 245567776653 1243 11 2211110
Q ss_pred HHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 279 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 279 ~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++++|+|++ .. +++.++.+.++|+.+
T Consensus 395 -------~~~~~~iRis~~-~~-~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 395 -------CQEPGWFRVCFA-NM-DDGTVDIALARIRRF 423 (428)
T ss_dssp -------CSSSSEEEEECS-SS-CHHHHHHHHHHHHHH
T ss_pred -------CCCCCEEEEEEe-cC-CHHHHHHHHHHHHHH
Confidence 112478999999 54 444455555555544
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=215.26 Aligned_cols=220 Identities=17% Similarity=0.146 Sum_probs=164.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|+++++++++++++++|++++|+
T Consensus 96 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~ 170 (391)
T 3dzz_A 96 PAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-----GNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPH 170 (391)
T ss_dssp HHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-----HTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSB
T ss_pred HHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-----HcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCC
Confidence 57888999999999999999999999988874 36778877776 489999999943799999999999
Q ss_pred CCcccc---cChHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCC---Cc--EEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS------PARLG---AD--VVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~---~d--~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+ .++++|+++|+++|+++|+|++|+.+... ....+ .| +++.|+||+++++|.|+ ||++.+
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~ 249 (391)
T 3dzz_A 171 NPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIP 249 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECC
T ss_pred CCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh-eEEEEC
Confidence 999999 56889999999999999999999655322 11222 45 99999999999889997 999887
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHH
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~ 215 (324)
+++.+.+............+.+.+.++...+.. ..+++...+++.++++++.+.|++ . +..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---------- 319 (391)
T 3dzz_A 250 NPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN---------- 319 (391)
T ss_dssp SHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC----------
T ss_pred CHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC----------
Confidence 889888877644211123333444333333332 233566677788999999999998 4 44554333
Q ss_pred HHHhccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 216 KSMANKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
.+.++++.++. ..+...+.+.+
T Consensus 320 ---------~~~~~~~~~~~~~~~~~~~~~~l 342 (391)
T 3dzz_A 320 ---------ASYLAWVDISALGMNAEDFCKYL 342 (391)
T ss_dssp ---------BSSEEEEECGGGCSCHHHHHHHH
T ss_pred ---------ceEEEEEehhhcCCCHHHHHHHH
Confidence 45667788863 13456676666
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=218.62 Aligned_cols=206 Identities=19% Similarity=0.240 Sum_probs=160.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++
T Consensus 102 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~-~~~~ 175 (422)
T 3fvs_A 102 GALFTAFQALVDEGDEVIIIEPFFDCYEPMTM-----MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-TSRT 175 (422)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTC-CTTE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCchhhHHHHH-----HcCCEEEEEecccccccccccccccCCCCCHHHHHhhc-CCCc
Confidence 57888899999999999999999999988774 25666666653 2899999999 7889
Q ss_pred eEEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCe
Q 020548 65 KVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADI 131 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r 131 (324)
++|++++|+||||.+. ++++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||.+|++|.|
T Consensus 176 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r 255 (422)
T 3fvs_A 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWK 255 (422)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccce
Confidence 9999999999999998 58899999999999999999996654221 11 14669999999999989999
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--------CcccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--------RIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+ ||+++++++++.+..... ...+.++.+.+.++..++. ...+++...+++.++++.+.+.|++.+..+..
T Consensus 256 ~-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 333 (422)
T 3fvs_A 256 V-GWVLGPDHIMKHLRTVHQ-NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII 333 (422)
T ss_dssp C-EEEECCHHHHHHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB
T ss_pred E-EEEEeCHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC
Confidence 7 999999999988876654 1112233333333333333 13446667778899999999999998877665
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|. .|.++++.+.
T Consensus 334 ~~-------------------~~~~~~~~~~ 345 (422)
T 3fvs_A 334 PQ-------------------GSYFLITDIS 345 (422)
T ss_dssp CS-------------------BSSEEEEECH
T ss_pred CC-------------------eeeEEEEech
Confidence 65 6778888875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=215.41 Aligned_cols=216 Identities=18% Similarity=0.184 Sum_probs=163.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------CCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------SDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------~d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|+++
T Consensus 113 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~ 186 (407)
T 3nra_A 113 GALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFS 186 (407)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH-HTTCCEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-----HcCCEEEEeecccccccCcCCCcCHHHHHHHH-hhCCcEEEEc
Confidence 57888888889999999999999999988874 36777777765 1899999999 6689999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c------cCCCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P------ARLGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~------~~~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+.+... + ...+.++++.|+||+++++|.|+ ||+
T Consensus 187 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~ 265 (407)
T 3nra_A 187 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL-GVA 265 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCC-EEE
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeE-EEE
Confidence 99999999988 899999999999999999999654321 1 11346799999999999889997 999
Q ss_pred EcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 137 CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
++++++++.+..... ....+........+...+ .+++...+++.++++++.+.|+++ +..+..|.
T Consensus 266 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------ 335 (407)
T 3nra_A 266 FGSRAIIARMEKLQA----IVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQ------ 335 (407)
T ss_dssp EECHHHHHHHHHHHH----HHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCS------
T ss_pred EcCHHHHHHHHHHHh----hhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC------
Confidence 999999998887665 222222333222222222 336677778889999999999987 44544333
Q ss_pred hHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 212 HELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
.|.++++.++. ......+.+.+.
T Consensus 336 -------------~~~~~~~~~~~~~~~~~~~~~~l~ 359 (407)
T 3nra_A 336 -------------AGSYLFPRLPKLAVAPAEFVKILR 359 (407)
T ss_dssp -------------BSSEECCBCCCBSSCHHHHHHHHH
T ss_pred -------------eeEEEEEeCCCCCCCHHHHHHHHH
Confidence 46788888864 334556666663
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=220.90 Aligned_cols=267 Identities=15% Similarity=0.208 Sum_probs=180.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhc-------CCceEEE-E
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ-------GRTKVLY-F 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~-------~~~~~v~-~ 69 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++.+ .++++|+ +
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~ 194 (425)
T 1vp4_A 120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVV 194 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEEC
Confidence 57888899999999999999999999988874 267777776652 89999998833 2789985 6
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc----CCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----RLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++|+||||.+.+ +++|+++|+++|+++|+||+|+.+... +. ..+.+++++|+||+++ +|.|+ ||++
T Consensus 195 ~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~ 272 (425)
T 1vp4_A 195 SNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVA 272 (425)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccce-EEEe
Confidence 899999999976 568999999999999999999665431 11 1257899999999998 89997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHhC-----CCceeCCCCCCC
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHRALIFARRMKKL-----GLKVLYPGLEDH 209 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~~p~~~~~ 209 (324)
+++++++.+...... .....+.+.+.++..++... ..+....+++.++++.+.+.|++. +..+..|.
T Consensus 273 ~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~---- 347 (425)
T 1vp4_A 273 GSKEFIRKIVQAKQS-ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSE---- 347 (425)
T ss_dssp CCHHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS----
T ss_pred eCHHHHHHHHHHhhh-hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCC----
Confidence 999999888776542 11223333333333344322 223455566788999999999875 34444343
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
.|.++++.++...+...+.+.+.. .|+ .+. |+..+.. .+..+
T Consensus 348 ---------------~g~~~~~~~~~~~~~~~l~~~l~~---~gi-~v~----------~g~~f~~---------~~~~~ 389 (425)
T 1vp4_A 348 ---------------GGLFIWLTLPEGFDTWEMFEYAKR---KKV-FYV----------PGRVFKV---------YDEPS 389 (425)
T ss_dssp ---------------BSSEEEEECCTTCCTTTTHHHHHH---HTE-ECE----------EGGGGCT---------TCCCC
T ss_pred ---------------ccEEEEEEcCCCCCHHHHHHHHHH---CCC-EEE----------CchhhcC---------CCCCC
Confidence 577899998732223445555543 232 211 2111100 01125
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhhhhc
Q 020548 290 GLVRMSVGYLGT---LDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 290 ~~iR~s~g~~~~---~~~~~~~l~~~l~~~~~~ 319 (324)
+++|+|++ ..+ .++.++.|.++++.+.++
T Consensus 390 ~~iRis~~-~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 390 PSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp SEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999 642 333455555666555433
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=218.81 Aligned_cols=219 Identities=19% Similarity=0.175 Sum_probs=163.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+|||
T Consensus 98 ~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~npt 171 (376)
T 2dou_A 98 EGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-----VASLRTFLIPLREDGLADLKAVPEGV-WREAKVLLLNYPNNPT 171 (376)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HTTCEEEEECBCTTSSBCGGGSCHHH-HHHEEEEEECSSCTTT
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-----HcCCEEEEeeCCCCCCCCHHHHHHhh-ccCceEEEECCCCCCc
Confidence 57888899999999999999999999988774 26777777764 3778888888 6789999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccCC----CCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARL----GADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|.+.+ +++|+++|+++|+++|+||+|+.+.. +.... +.+++++|+||+++++|.|+ ||+++++++++
T Consensus 172 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~ 250 (376)
T 2dou_A 172 GAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRL-GFALGSEEALA 250 (376)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCC-EEEEECHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhhee-EEEecCHHHHH
Confidence 99976 67889999999999999999965532 12222 57899999999998889997 99999999999
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+...... ...+.+.+.+.++...+... ..+....+++.++++.+.+.|++. ..+..|.
T Consensus 251 ~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~------------------ 310 (376)
T 2dou_A 251 RLERVKGV-IDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-LSLLPPR------------------ 310 (376)
T ss_dssp HHHHHHHH-HCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCC------------------
T ss_pred HHHHHHHh-cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCC------------------
Confidence 88876541 11222333333333344432 235566667789999999999887 5443232
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.+++++++...+...+.+.+..
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~l~~ 334 (376)
T 2dou_A 311 -ATMYLWGRLPEGVDDLEFGLRLVE 334 (376)
T ss_dssp -BSSEEEEECCTTCCHHHHHHHHHH
T ss_pred -eeEEEEEECCCCCCHHHHHHHHHH
Confidence 466788998743334566666654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=221.75 Aligned_cols=262 Identities=14% Similarity=0.119 Sum_probs=185.9
Q ss_pred chHHHHHHHcc--CCCC--EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC--SSGG--HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd--~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++.+++ ++|| +|+++.|+|+++...++ ..|.++..++.+ |+++++++++++++++|++++
T Consensus 116 ~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~ 190 (437)
T 3g0t_A 116 QGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-----ILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSN 190 (437)
T ss_dssp HHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-----HHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEES
T ss_pred HHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-----HcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeC
Confidence 57888899988 9999 99999999999988874 267777777653 789999999667899999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC---cc------------CCCCcEEEeCCccccccCCCeeE
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA------------RLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~---~~------------~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
|+||||.+.+ +++|+++|+++|+++|+|++|+.+... +. ..+.+++++|+||+++++|.|+
T Consensus 191 p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~- 269 (437)
T 3g0t_A 191 PNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRI- 269 (437)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCcccee-
Confidence 9999999986 777899999999999999999654321 11 1467899999999999889997
Q ss_pred EEEEcChhHHH-H-----------------HHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHH
Q 020548 134 GAVCGPANLVN-S-----------------MMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFA 191 (324)
Q Consensus 134 G~i~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~ 191 (324)
||++.++++++ . +..... ......+.+.+.++..++..... +....+++.++++.+.
T Consensus 270 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (437)
T 3g0t_A 270 GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY-ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMK 348 (437)
T ss_dssp EEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHH-HHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhhhhhhcccccccccchhHHHHHHHHh-hhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888 6 544333 11122333333333333433322 6777788899999999
Q ss_pred HHHHhCCCcee------CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccce
Q 020548 192 RRMKKLGLKVL------YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 265 (324)
Q Consensus 192 ~~L~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~ 265 (324)
+.|++.+..+. .|. ..+.++++.++ ..+...+.+.+.. .|+ .+.
T Consensus 349 ~~L~~~g~~~~~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~l~~~L~~---~gi-~v~------- 398 (437)
T 3g0t_A 349 KMFLDNGFNIVYDKDGNEPL------------------ADGFYFTVGYK-GMDSSKLIEKFVR---YGM-CAI------- 398 (437)
T ss_dssp HHHHTTTEEESSCEETTEEC------------------CSSSEEEEEET-TCCHHHHHHHHHH---TTE-ECE-------
T ss_pred HHHHHcCCEEeccccCCCCC------------------ceeEEEEEecC-CCCHHHHHHHHHH---cCe-EEe-------
Confidence 99999866554 131 15778999997 2345567676664 233 211
Q ss_pred eccccccccCCCCHHHHHhcCCC-CCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 266 MSCSGSSTSSELNAEEKALAGIS-AGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~-~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|.... +.. ++.+|+|++ .. +++.++.+.++|+.+.
T Consensus 399 ---~~~~~------------~~~~~~~iRis~~-~~-~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 399 ---TLKTT------------GSKRNEAMRICTS-LL-PESQFPDLEKRLQMLN 434 (437)
T ss_dssp ---ESTTT------------TCCCTTCEEEECS-SS-CGGGHHHHHHHHHHHH
T ss_pred ---ecccc------------CCCCCCEEEEEEe-cC-CHHHHHHHHHHHHHHH
Confidence 11111 111 378999999 65 4445566666665543
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=212.70 Aligned_cols=216 Identities=14% Similarity=0.166 Sum_probs=158.4
Q ss_pred chHHHHHHHccCCC-CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++| |+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 110 ~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~n 183 (398)
T 3ele_A 110 ASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-----AAGARLVEVPADTEHFQIDFDALEERI-NAHTRGVIINSPNN 183 (398)
T ss_dssp HHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECCCTTTSSCCHHHHHHTC-CTTEEEEEECSSCT
T ss_pred HHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCCcCCcCCHHHHHHHh-CcCCCEEEEcCCCC
Confidence 57888999999999 999999999999988774 368888888764 899999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHh------cCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 75 PTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~------~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|||.+.+ +++|+++|++ +|+++|+||+|+.+.... ...+.+++++|+||+++++|.|+ ||+++
T Consensus 184 ptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~ 262 (398)
T 3ele_A 184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERI-GYVLV 262 (398)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCC-EEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcccee-EEEEE
Confidence 9999987 6677789998 999999999996654321 12367899999999999889997 99999
Q ss_pred ChhHHH------HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 139 PANLVN------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 139 ~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
++++.+ .+..... ..............+...+... ...+++.++++++.+.|++.+..+..|.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~------- 331 (398)
T 3ele_A 263 PDEVYDKAELYAAVCGAGR---ALGYVCAPSLFQKMIVKCQGAT-GDINAYKENRDLLYEGLTRIGYHCFKPD------- 331 (398)
T ss_dssp CTTSTTHHHHHHHHHHHHH---HTTCCCSCHHHHHHHTTCTTCC-CCHHHHHHHHHHHHHHHHHHTCCEECCS-------
T ss_pred cchhhhHHHHHHHHHHHhh---hccccCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHcCCeecCCC-------
Confidence 887433 3322222 0112233333333332222221 1356678889999999998877665444
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.+.++|+.++.. +...+.+.+..
T Consensus 332 ------------~~~~~~~~~~~~-~~~~~~~~l~~ 354 (398)
T 3ele_A 332 ------------GAFYMFVKALED-DSNAFCEKAKE 354 (398)
T ss_dssp ------------BSSEEEEECSSS-CHHHHHHHHHT
T ss_pred ------------eeEEEEEEcCCC-CHHHHHHHHHH
Confidence 466689998742 35566666653
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=215.93 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=163.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++. .|++++++++ ++++++|++++|+
T Consensus 97 ~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~~~ 170 (411)
T 2o0r_A 97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-----MAGAHRVTVPLVPDGRGFALDADALRRAV-TPRTRALIINSPH 170 (411)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEEETTEEECCHHHHHHHC-CTTEEEEEEESSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEeeccccccCCCCCHHHHHHhh-ccCceEEEEeCCC
Confidence 57888888889999999999999999988774 25777666654 3899999999 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
||||.+.+ +++|+++|+++|+++|+|++|+.+... ... .++|+++.|+||+++++|.|+ ||+++++
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~ 249 (411)
T 2o0r_A 171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKI-GWACGPA 249 (411)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCE-EEEECCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceE-EEEeeCH
Confidence 99999976 589999999999999999999655321 111 357999999999999889997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
++++.+...... .....+.+.+.++..++.. ..+++...+++.++++++.+.|++.+..+..|.
T Consensus 250 ~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------- 314 (411)
T 2o0r_A 250 ELIAGVRAAKQY-LSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIGFAVHDSY-------------- 314 (411)
T ss_dssp HHHHHHHHHHHH-HTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC--------------
T ss_pred HHHHHHHHHHhh-ccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCC--------------
Confidence 999888766541 1233344444444334432 233555667778999999999998776654333
Q ss_pred ccCCCcceEEEEEeCCH--HHHHHHHHHh
Q 020548 220 NKEYGFGGLLCLDMETE--EKANRLMNYL 246 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~--~~~~~~~~~l 246 (324)
.|.++++.++.. .+...+.+.+
T Consensus 315 -----~g~~~~~~~~~~~~~~~~~~~~~l 338 (411)
T 2o0r_A 315 -----GTYFLCADPRPLGYDDSTEFCAAL 338 (411)
T ss_dssp -----BSSEEEEECGGGTCCCHHHHHHHH
T ss_pred -----eeEEEEEecCCCCCCCHHHHHHHH
Confidence 466889998631 1244565554
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=207.15 Aligned_cols=247 Identities=17% Similarity=0.210 Sum_probs=176.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+++..++.++ +||+|+++.|+|+++...++ ..|.++..++.+ |+++++++ .+++++++++|+|||
T Consensus 79 ~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~---~~~~~v~i~~p~npt 148 (337)
T 3p1t_A 79 ECFDRISAEF--SSMRFVTAWPGFDGYRARIA-----VSGLRHFEIGLTDDLLLDPNDLAQV---SRDDCVVLANPSNPT 148 (337)
T ss_dssp HHHHHHHHHS--TTSEEEEESSSCSHHHHHHT-----TSCCEEEEECBCTTSSBCHHHHTTC---CTTEEEEEESSCTTT
T ss_pred HHHHHHHHhc--CCCeEEEeCCCcHHHHHHHH-----HcCCEEEEecCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCC
Confidence 4677777776 89999999999999988773 378888888754 78888775 468999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCCCc---cC-CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP---AR-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
|.+.|++++.++|+++++ +|+||+|+.+.... .. .+.+++++|+||+++++|.|+ ||+++++++++.+......
T Consensus 149 G~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~ 226 (337)
T 3p1t_A 149 GQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRL-GALFGPSELIAAMKRKQWF 226 (337)
T ss_dssp CCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCC-EEEECCHHHHHHHHTTSCT
T ss_pred CCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchhe-EEEEeCHHHHHHHHhhcCC
Confidence 999999999999999986 56699996554221 12 267899999999999899997 9999999999988765431
Q ss_pred hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEE
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 232 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 232 (324)
...+.+.+.++..++.....+....+++.++++++.+.|++.+..+. |. .|+++++.
T Consensus 227 ---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~~~~~ 283 (337)
T 3p1t_A 227 ---CNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVA-SS-------------------EANFVLVE 283 (337)
T ss_dssp ---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC-CC-------------------SSSEEEEE
T ss_pred ---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCcCEEC-CC-------------------CCeEEEEE
Confidence 22223333333334444344566677778889999999999876554 22 36688888
Q ss_pred eCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 233 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 233 l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
.++... +.+.+.. .|+ .++.|.. ++. ++++|+|++ . ++.++.+.++
T Consensus 284 ~~~~~~---~~~~l~~---~gi-~v~~g~~----------------------~~~-~~~iRis~~-~---~~~~~~l~~a 329 (337)
T 3p1t_A 284 NAAGER---TLRFLRE---RGI-QVKDAGQ----------------------FGL-HHHIRISIG-R---EEDNDRLLAA 329 (337)
T ss_dssp CTTTHH---HHHHHHH---TTE-ECEEGGG----------------------GTC-CSEEEEECC-C---HHHHHHHHHH
T ss_pred cCCHHH---HHHHHHH---CCe-EEEECcc----------------------CCC-CCeEEEecC-C---HHHHHHHHHH
Confidence 875433 3333432 232 2222211 111 479999999 3 5566777777
Q ss_pred HHhhh
Q 020548 313 LSRMQ 317 (324)
Q Consensus 313 l~~~~ 317 (324)
|+.+.
T Consensus 330 l~~~~ 334 (337)
T 3p1t_A 330 LAEYS 334 (337)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=215.90 Aligned_cols=216 Identities=15% Similarity=0.129 Sum_probs=162.0
Q ss_pred chHHHHHHHccCCC-----CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~g-----d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++++++++| |+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|+++
T Consensus 102 ~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~g~~~d~~~l~~~~-~~~~~~v~l~ 175 (396)
T 3jtx_A 102 EALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-----LGGGEIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVC 175 (396)
T ss_dssp HHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-----HTTCEEEEEECCTTTCCCCGGGSCHHH-HHTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEeecCCCCCccCHHHHHHhh-ccCcEEEEEE
Confidence 57888999999997 799999999999988774 367888777652 778898888 6689999999
Q ss_pred cCCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC---cc-----------CCCCcEEEeCCccccccCCCeeE
Q 020548 71 SISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS---PA-----------RLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 71 ~~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~---~~-----------~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+|+||||.+.+.+ +|+++|+++|+++|+||+|+.+... +. ..+.++++.|+||.++++|.|+
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~- 254 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS- 254 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccce-
Confidence 9999999998655 5899999999999999999665432 11 2578899999999999999997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
||+++++++++.+...... .....+.+.+.++...+.....+....+++.++++.+.+.|++. ..+..|.
T Consensus 255 G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~-------- 324 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRTY-HGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV-FDVKLPD-------- 324 (396)
T ss_dssp EEEEECHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCCS--------
T ss_pred EEEEeCHHHHHHHHHHHhh-cccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCC--------
Confidence 9999999999998876551 11222333333433344444456667777889999999999876 3333233
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
.|.++|+.++. .....+.+.+
T Consensus 325 -----------~~~~~~~~~~~-~~~~~~~~~l 345 (396)
T 3jtx_A 325 -----------ASFYIWLKVPD-GDDLAFARNL 345 (396)
T ss_dssp -----------SSSEEEEECTT-SCHHHHHHHH
T ss_pred -----------eeEEEEEECCC-CCHHHHHHHH
Confidence 57789999974 2344555555
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=212.42 Aligned_cols=208 Identities=18% Similarity=0.211 Sum_probs=159.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+
T Consensus 89 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 89 EALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-----LAGAKARLVRLDLTPEGFRLDLSALEKAL-TPRTRALLLNTPM 162 (381)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEEETTEEECCHHHHHTTC-CTTEEEEEEESSC
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCCCCccCCcCHHHHHHhc-CcCCEEEEECCCC
Confidence 57888888889999999999999999988774 267777666542 899999999 7789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----Ccc--CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||||.+.+ +++|+++|+++|+++|+|++|+.+.. +.. ..++|+++.|+||+++++|.|+ ||++++++++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~ 241 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRV-GWIVGPKEFM 241 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCC-EEEECCTTTH
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccce-EEEEeCHHHH
Confidence 99999976 88999999999999999999965532 111 2478999999999999889997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+...... .....+.+.+.++..++.. ..+++...+++.++++++.+.|++.+.++..|.
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------------- 305 (381)
T 1v2d_A 242 PRLAGMRQW-TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE--------------- 305 (381)
T ss_dssp HHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS---------------
T ss_pred HHHHHHHhh-cccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCC---------------
Confidence 888766541 1122333333333333332 233556677789999999999999777665443
Q ss_pred cCCCcceEEEEEeCCH
Q 020548 221 KEYGFGGLLCLDMETE 236 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~ 236 (324)
.|.++++.+++.
T Consensus 306 ----~~~~~~~~~~~~ 317 (381)
T 1v2d_A 306 ----GTYFLMAELPGW 317 (381)
T ss_dssp ----BSSEEEEECTTC
T ss_pred ----cceEEEEecChH
Confidence 466888988743
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=219.53 Aligned_cols=219 Identities=16% Similarity=0.116 Sum_probs=161.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ ++++++|++++|+||
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~np 193 (404)
T 2o1b_A 120 NGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-----LADGKPVPLNLEPPHYLPDWSKVDSQI-IDKTKLIYLTYPNNP 193 (404)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-----HTTCEEEEEECCTTTCCCCGGGSCHHH-HHHEEEEEECSSCTT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEeccCcccCcCCHHHHHHhh-ccCceEEEEcCCCCC
Confidence 57888999999999999999999999998774 25777777664 2678888888 678999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccCC----CCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARL----GADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+.. +.... +.+++++|+||+++++|.|+ ||++++++++
T Consensus 194 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~ 272 (404)
T 2o1b_A 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRV-GFAVGNKDMI 272 (404)
T ss_dssp TCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCC-EEEEECHHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhhe-EeEecCHHHH
Confidence 999985 77899999999999999999966532 12222 46799999999998889997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
+.+...... .....+.+.+.++..++.. ..+++...+++.++++.+.+.|++.+..+..|.
T Consensus 273 ~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 334 (404)
T 2o1b_A 273 QALKKYQTH-TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAK----------------- 334 (404)
T ss_dssp HHHHHHHHH-HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCC-----------------
T ss_pred HHHHHHHhh-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCC-----------------
Confidence 988776541 1122233333333333332 233555666778899999999999876654333
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++++.++...+...+.+.+.
T Consensus 335 --~g~~~~~~~~~~~~~~~l~~~l~ 357 (404)
T 2o1b_A 335 --GGIYVWLETPPGYDSEQFEQFLV 357 (404)
T ss_dssp --BSSEEEEECCTTCCHHHHHHHHH
T ss_pred --cceEEEEeCCCCCCHHHHHHHHH
Confidence 45678999873323445655543
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=215.12 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=161.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEE-EecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLY-FESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~-~~~~~npt 76 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++.+.++++|+ +++|+|||
T Consensus 102 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~npt 176 (397)
T 2zyj_A 102 QALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-----LQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPT 176 (397)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCC
Confidence 57888888889999999999999999988874 267777766542 899999999444789885 68999999
Q ss_pred ccccCh---HHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC------CCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 77 LAVANI---PELSRLAHDKGVTVVVDNTFSPLVLS------PARL------GADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 77 G~~~~~---~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|.+.+. ++|+++|+++|+++|+||+|+.+... ...+ +.+++++|+||+++ +|.|+ ||++++++
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~ 254 (397)
T 2zyj_A 177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRV-AFAVAHPE 254 (397)
T ss_dssp CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCC-EEEECCHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-cccee-EEEecCHH
Confidence 999874 48999999999999999999665421 1112 34599999999998 89997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC---CCceeCCCCCCCchhHHHH
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~p~~~~~~~~~~~~ 216 (324)
+++.+...... ...+++.+.+.++..++... ..+....+++.++++.+.+.|++. +..+..|.
T Consensus 255 ~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~----------- 322 (397)
T 2zyj_A 255 ALQKLVQAKQG-ADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK----------- 322 (397)
T ss_dssp HHHHHHHHHHH-HHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS-----------
T ss_pred HHHHHHHHHHh-hcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC-----------
Confidence 99888766542 11233334443443344433 234555666788999999999875 44544444
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.++++.++...+...+.+.+..
T Consensus 323 --------~g~~~~~~~~~~~~~~~~~~~l~~ 346 (397)
T 2zyj_A 323 --------GGMFVWMELPKGLSAEGLFRRALE 346 (397)
T ss_dssp --------BSSEEEEECSTTCCHHHHHHHHHH
T ss_pred --------ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 577899999743335567666664
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=214.12 Aligned_cols=206 Identities=18% Similarity=0.213 Sum_probs=159.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----------------CHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----------------DHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----------------d~~~l~~~l~~~~~~ 65 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++.+ |++++++++ +++++
T Consensus 96 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~-~~~~~ 169 (410)
T 3e2y_A 96 GSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-----MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF-SSKTK 169 (410)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC-CTTEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEeccccccccccccccCCcCCHHHHHhhc-CCCce
Confidence 57888899999999999999999999988774 256666666542 899999999 78899
Q ss_pred EEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCee
Q 020548 66 VLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADII 132 (324)
Q Consensus 66 ~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~ 132 (324)
+|++++|+||||.+. ++++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||.++++|.|+
T Consensus 170 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~ 249 (410)
T 3e2y_A 170 AIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKL 249 (410)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceE
Confidence 999999999999995 68899999999999999999996654321 11 145699999999999889997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--------CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--------RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
||+++++++++.+..... .....++.+.+.++...+. ...++....+++.++++.+.+.|++.+..+..|
T Consensus 250 -G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 327 (410)
T 3e2y_A 250 -GWSIGPAHLIKHLQTVQQ-NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVP 327 (410)
T ss_dssp -EEEECCHHHHHHHHHHHH-TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBC
T ss_pred -EEEEECHHHHHHHHHHHH-hhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 999999999998876654 1112233333333333333 133466677778999999999999988776655
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
. .|.++++.+.
T Consensus 328 ~-------------------~~~~~~~~~~ 338 (410)
T 3e2y_A 328 D-------------------GGYFIIADVS 338 (410)
T ss_dssp S-------------------BSSEEEEECG
T ss_pred C-------------------ccEEEEEEch
Confidence 5 5778888875
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=214.33 Aligned_cols=221 Identities=11% Similarity=0.048 Sum_probs=160.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++. .|++++++++.++++++|++++|+
T Consensus 100 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~ 174 (399)
T 1c7n_A 100 PAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (399)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC
Confidence 57888999999999999999999999988774 25777776654 379999999943789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+.+ +++|+++|+++|+++|+||+|+.+... ... .+.++++.|+||+++++|.|+ ||++.+
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~ 253 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM-SNIIIK 253 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECC
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchhe-EEEEEC
Confidence 99999988 899999999999999999999665321 111 246799999999999889997 999986
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHH
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~ 215 (324)
+++++.+............+.+.+.++..++.. ...++...+++.++++++.+.|++ . +..+..|.
T Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------- 323 (399)
T 1c7n_A 254 NPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE---------- 323 (399)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS----------
T ss_pred CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC----------
Confidence 678888877655211011222223222223322 233556666778999999999998 5 33443222
Q ss_pred HHHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 216 KSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
++.++|+.++.. .+...+.+.+.
T Consensus 324 ---------~~~~~~~~~~~~~~~~~~~~~~l~ 347 (399)
T 1c7n_A 324 ---------GTYLQWIDFRALKMDHKAMEEFMI 347 (399)
T ss_dssp ---------BSSEEEEECGGGCCCHHHHHHHHH
T ss_pred ---------ceEEEEEEcccCCCCHHHHHHHHH
Confidence 455667888631 23456666664
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=210.72 Aligned_cols=262 Identities=12% Similarity=0.154 Sum_probs=191.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc-----CCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~-----~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++..|++++++.+++ .++++|++++|+|||
T Consensus 114 ~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~npt 188 (399)
T 3tqx_A 114 DANGGLFETLLGPEDAIISDELNHASIIDGIR-----LCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMD 188 (399)
T ss_dssp HHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----SCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTT
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCC
Confidence 36677788889999999999999999988773 37888989988889999998833 189999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc-------cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP-------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~-------~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l 146 (324)
|.+.|+++|.++|+++|+++|+||+|+ ++.... .. .++|++++|+||+++ |.+ |||+++++++++.+
T Consensus 189 G~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~-gG~~~~~~~~~~~~ 265 (399)
T 3tqx_A 189 GIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GAS-GGYTSGHKEIIEWL 265 (399)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSC-CEEEEECHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCc-eEEEEcCHHHHHHH
Confidence 999999999999999999999999993 432111 11 267999999999998 334 59999999999988
Q ss_pred HHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 147 MDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
....... ..++++.+..++.+...+ .......+++.++++++.+.|++.+.++. +.
T Consensus 266 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~----------------- 325 (399)
T 3tqx_A 266 RNRSRPY--LFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLV-PG----------------- 325 (399)
T ss_dssp HHHCHHH--HSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC-----------------
T ss_pred HHhCcce--eccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcC-CC-----------------
Confidence 8764322 223344444333322222 33456777789999999999999876554 32
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|+++++.+++......+.+.+.. .|+.. ..+. .+. ....++++|+|++ ...+
T Consensus 326 --~~~~~~~~~~~~~~~~~~~~~l~~---~gi~v-~~~~------~~~--------------~~~~~~~iRi~~~-~~~~ 378 (399)
T 3tqx_A 326 --NHPIIPVMLGDAQLATNMADHLLQ---EGIYV-VGFS------YPV--------------VPMGKARIRVQMS-AVHT 378 (399)
T ss_dssp --SSSEEEEEEECHHHHHHHHHHHHH---TTEEC-CEEC------TTT--------------SCTTCEEEEEECC-TTCC
T ss_pred --CCCEEEEEeCCHHHHHHHHHHHHH---CCCEE-eeeC------CCC--------------CCCCCceEEEEee-cCCC
Confidence 477899999876677888888774 34311 1110 010 0112468999999 7777
Q ss_pred HHHHHHHHHHHHhhhh
Q 020548 303 DQRWSQFEKALSRMQD 318 (324)
Q Consensus 303 ~~~~~~l~~~l~~~~~ 318 (324)
++.++.+.++|+++-+
T Consensus 379 ~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 379 QQQLDRAIEAFGQVGK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666543
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=212.28 Aligned_cols=256 Identities=14% Similarity=0.142 Sum_probs=184.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.++-..+++..+..+++++++++|+||||.+.|
T Consensus 93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~ 167 (360)
T 3hdo_A 93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-----VQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFP 167 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HHTCEEEEECBCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-----HCCCEEEEeeCCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcC
Confidence 57888999999999999999999999988774 3688888887653212222221235789999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCC-cc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhc
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLS-PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 156 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~-~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~ 156 (324)
++++.++|+++|+++|+||+|+.+... .. ..+.+++++|+||+++++|.|+ ||++.++++.+.+...... +
T Consensus 168 ~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~ 243 (360)
T 3hdo_A 168 LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRI-GLAIARPEVIAALDKIRDH---Y 243 (360)
T ss_dssp HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCC-EEEECCHHHHHHHHHHSCS---C
T ss_pred HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccce-eeEeeCHHHHHHHHHhCCC---C
Confidence 999999999999999999999665322 11 2367799999999999899997 9999999999999877651 2
Q ss_pred cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 157 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+.+.++..++....++....+++.++++++.+.|++.+..+. |. .|+++++.+++.
T Consensus 244 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-------------------~~~~~~~~~~~~ 303 (360)
T 3hdo_A 244 NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVI-PS-------------------QGNYLFATPPDR 303 (360)
T ss_dssp CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-CC-------------------SSSEEEEECTTC
T ss_pred CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEc-CC-------------------CccEEEEECCCC
Confidence 2222333333334444444667777889999999999999866553 33 467888888632
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+...+.+.+.. .|+ .++.+.. ...++++|+|++ ++++++.+.++|+.+
T Consensus 304 -~~~~l~~~l~~---~gi-~v~~~~~-----------------------~~~~~~iRis~~----~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 304 -DGKRVYDGLYA---RKV-LVRHFSD-----------------------PLLAHGMRISIG----TREEMEQTLAALKEI 351 (360)
T ss_dssp -CHHHHHHHHHH---TTE-ECBCCCS-----------------------TTTTTSEEEECC----CHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHH---CCE-EEEECCC-----------------------CCCCCEEEEEcC----CHHHHHHHHHHHHHH
Confidence 35566666663 343 2111110 012478999999 456678888888887
Q ss_pred hh
Q 020548 317 QD 318 (324)
Q Consensus 317 ~~ 318 (324)
.+
T Consensus 352 ~~ 353 (360)
T 3hdo_A 352 GE 353 (360)
T ss_dssp HC
T ss_pred hc
Confidence 64
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=210.30 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=181.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhc-CCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQ-GRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~-~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|++ +...+. . .|.++..++. .|++++++++++ +++++|++++++
T Consensus 82 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 156 (386)
T 2dr1_A 82 GIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE----S-NGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNE 156 (386)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred HHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH----H-hCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeec
Confidence 57888888889999999999999998 555552 2 6788888776 489999999853 589999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh--
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-- 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~-- 149 (324)
||||.+.|+++|.++|+++|+++|+|++|+... .+....++|++++|+||+++++++ + ||++.++++++.+...
T Consensus 157 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g-~-G~~~~~~~~~~~~~~~~~ 234 (386)
T 2dr1_A 157 TSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPG-L-AIGAFSERFLEIAEKMPE 234 (386)
T ss_dssp TTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSS-C-EEEEECHHHHHHHTTCTT
T ss_pred CCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCc-e-EEEEECHHHHHHHhcCCC
Confidence 999999999999999999999999999994332 233345789999999999988643 4 9999999888776310
Q ss_pred -----------hhhh-hhccCCCCCHHH---HHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 150 -----------HQGA-LMLLGPTMNPKV---AFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 150 -----------~~~~-~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
.... ......++.... +...+.... .++...+++.++++++.+.|++.+.++..|.-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----- 309 (386)
T 2dr1_A 235 RGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPG----- 309 (386)
T ss_dssp CCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT-----
T ss_pred CceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc-----
Confidence 0000 001122333222 222222221 25567777899999999999998665543320
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
...+.++++.++...+...+.+.+.. .|+ .+..|. .. ..+++
T Consensus 310 -----------~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~~~----------~~-------------~~~~~ 351 (386)
T 2dr1_A 310 -----------HESPTITAVLTPPGIKGDEVYEAMRK---RGF-ELAKGY----------GS-------------VKEKT 351 (386)
T ss_dssp -----------CBCSSEEEEECCTTCCHHHHHHHHHH---TTE-ECEECC----------GG-------------GTTTE
T ss_pred -----------ccCCceEEEEcCCCCCHHHHHHHHHH---CCe-EEecCc----------cc-------------cCCCE
Confidence 01467899998733345667777664 233 212121 00 02478
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|+|++ ...++++++.+.++|+.+
T Consensus 352 iRi~~~-~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 352 FRIGHM-GYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp EEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHH
Confidence 999999 755555555555555443
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=211.92 Aligned_cols=252 Identities=17% Similarity=0.198 Sum_probs=182.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++ ++++|++++|+||
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~np 169 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-----FAGLEFVGVPLRADFTLDRGAMLAAM-AEHQPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-----TTTCEEEEEECCTTSCCCHHHHHHHH-HHHCCSEEEEESSCTT
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEecCCCCCCCCHHHHHHHh-hccCCCEEEEcCCCCC
Confidence 57888999999999999999999999887774 368888887753 899999999 55 8999999999999
Q ss_pred cccccC---hHHHHHHHHhc--CCEEEEcCCCCcCCCCc-----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH
Q 020548 76 TLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 145 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~--~~~~ivD~~~~~~~~~~-----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~ 145 (324)
||.+.+ +++|+++|+++ |+++|+|++|+.+.... ...+.++++.|+||+ +++|.|+ ||++.++++.+.
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~-G~~~~~~~~~~~ 247 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRL-GYVAGDPQWLEQ 247 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCE-EEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCc-eeeeeCHHHHHH
Confidence 999964 77888889999 99999999996654221 123677999999999 8999997 999999999888
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+...... +..+.+.+..+..++....++....+++.++++++.+.|++. +..+ .|.
T Consensus 248 ~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~------------------- 304 (367)
T 3euc_A 248 LDKVRPP---YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTV-FPS------------------- 304 (367)
T ss_dssp HGGGCCS---SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE-CCC-------------------
T ss_pred HHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC-------------------
Confidence 8765541 222333333344444443345667777899999999999988 4453 343
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.|+++++.++ +...+.+.+.. .|+ .++.|... . +..++++|+|++ +++
T Consensus 305 ~~~~~~~~~~---~~~~l~~~l~~---~gi-~v~~~~~~------~---------------~~~~~~iRis~~----~~~ 352 (367)
T 3euc_A 305 AANFLLARVP---DAAQTFDRLLA---RKV-LIKNVSKM------H---------------PLLANCLRVTVS----TPE 352 (367)
T ss_dssp SSSEEEEECS---CHHHHHHHHHT---TTE-ECEECGGG------C---------------GGGTTEEEEECC----CHH
T ss_pred CCeEEEEECC---CHHHHHHHHHH---CCe-EEEECCcc------C---------------CCCCCEEEEecC----CHH
Confidence 4678899887 34556666653 343 22222110 0 112589999998 344
Q ss_pred HHHHHHHHHHhh
Q 020548 305 RWSQFEKALSRM 316 (324)
Q Consensus 305 ~~~~l~~~l~~~ 316 (324)
+++.+.++|+++
T Consensus 353 ~i~~~~~~l~~~ 364 (367)
T 3euc_A 353 ENAQFLEAFAAS 364 (367)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=211.38 Aligned_cols=249 Identities=15% Similarity=0.210 Sum_probs=181.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++ ++++|++++|+||
T Consensus 103 ~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 103 EILQQLLQAFGGPGRTALGFQPSYSMHPILAK-----GTHTEFIAVSRGADFRIDMDVALEEI-RAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEECCTTSSCCHHHHHHHH-HHHCCSEEEEESSCTT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCCcCCCCCHHHHHHHh-hccCCCEEEEeCCCCC
Confidence 57888888889999999999999999988774 267777777643 799999999 55 8899999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccC----CC-CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPAR----LG-ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~----~~-~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
||.+.|.+++.++++.+++++|+||+|+.+.. +... .+ .+++++|+||+++++|.|+ ||++.++++++.+..
T Consensus 177 tG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~ 255 (369)
T 3cq5_A 177 TGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRL-GYFVANPAFIDAVML 255 (369)
T ss_dssp TCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCC-EEEEECTHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccce-EEEEeCHHHHHHHHH
Confidence 99999999999999999999999999965542 2222 25 7799999999998889997 999999998888876
Q ss_pred hhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 149 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.... +..+.+.+..+..++....+++...+++.++++++.+.|++.+..+. |. .|++
T Consensus 256 ~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~ 312 (369)
T 3cq5_A 256 VRLP---YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEELGYAVV-PS-------------------ESNF 312 (369)
T ss_dssp TSCT---TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHTCEEE-CC-------------------SSSE
T ss_pred cCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEC-CC-------------------CCeE
Confidence 5441 22222333333334433334556667788999999999988766554 43 4668
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++ .+...+.+.+.. .|+ .+ .|+ + .++++|+|++ . +++++.
T Consensus 313 ~~~~~~--~~~~~l~~~l~~---~gi-~v----------~~~---------------~-~~~~iRis~~-~---~~~i~~ 356 (369)
T 3cq5_A 313 VFFGDF--SDQHAAWQAFLD---RGV-LI----------RDV---------------G-IAGHLRTTIG-V---PEENDA 356 (369)
T ss_dssp EEEECC--SSHHHHHHHHHH---TTE-EC----------BCC---------------S-CTTEEEEECC-C---HHHHHH
T ss_pred EEEECC--CCHHHHHHHHHH---CCE-EE----------EEC---------------C-CCCeEEEEeC-C---HHHHHH
Confidence 899886 234456666653 333 11 111 0 1478999998 3 345566
Q ss_pred HHHHHHhh
Q 020548 309 FEKALSRM 316 (324)
Q Consensus 309 l~~~l~~~ 316 (324)
+.++|+++
T Consensus 357 ~~~~l~~~ 364 (369)
T 3cq5_A 357 FLDAAAEI 364 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=212.58 Aligned_cols=220 Identities=15% Similarity=0.197 Sum_probs=160.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh----c-CCceEEE-Eec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV----Q-GRTKVLY-FES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~----~-~~~~~v~-~~~ 71 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++. + +++++|+ +++
T Consensus 109 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 183 (407)
T 2zc0_A 109 GALDLLGRVLIDPGDVVITENPSYINTLLAFE-----QLGAKIEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPT 183 (407)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCC
Confidence 57888999989999999999999999988774 267777776653 8999999993 2 2788875 688
Q ss_pred CCCCcccccChH---HHHHHHHhcCCEEEEcCCCCcCCCC------ccCC---CCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PARL---GADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~~~---~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.|.+ +|+++|+++|+++|+|++|+.+... ...+ +.+++++|+||+++ +|.|+ ||++++
T Consensus 184 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~ 261 (407)
T 2zc0_A 184 GQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRI-GWIIAE 261 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCC-EEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcce-EEEecC
Confidence 999999998876 9999999999999999999655321 1122 46789999999998 79996 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhC-C-CceeCCCCCCCchhH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKL-G-LKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~-~-~~~~~p~~~~~~~~~ 213 (324)
+++++.+...... ....++.+.+..+..++... ..+....+++.++++.+.+.|++. + ..+..|.
T Consensus 262 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------- 332 (407)
T 2zc0_A 262 GEILKKVLMQKQP-IDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPI-------- 332 (407)
T ss_dssp HHHHHHHHHHHTT-TTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCS--------
T ss_pred HHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCC--------
Confidence 9999988876552 11222333333333344433 233445566788899999999874 3 3443333
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.|.++++.++...+...+.+.+..
T Consensus 333 -----------~~~~~~~~~~~~~~~~~l~~~l~~ 356 (407)
T 2zc0_A 333 -----------AGMFVMFFLPEGADGISFANELME 356 (407)
T ss_dssp -----------BSSEEEEECSTTCCHHHHHHHHHH
T ss_pred -----------CcEEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999643335566666653
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=209.68 Aligned_cols=259 Identities=12% Similarity=0.103 Sum_probs=186.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC--CceEEEEecCCCCcccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~ 79 (324)
+|+..++++++++||.|+++.|+|+.+...++ ..|.++..++..|++++++.+.+. ++++|++++|+||||.+
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~ 184 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDS 184 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCc
Confidence 46778888889999999999999999988774 368889999888999999998432 37899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCC----c----cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLS----P----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~----~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
.|+++|.++|+++|+++|+||+|+.+... + ...+.|++++|+||+++++ |||+++++++++.+.....
T Consensus 185 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~----GG~~~~~~~~~~~l~~~~~ 260 (384)
T 1bs0_A 185 APLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSSTVADYLLQFAR 260 (384)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhcc----CcEEEeCHHHHHHHHHhch
Confidence 99999999999999999999999433211 1 1235899999999999865 4999999999888876532
Q ss_pred hhhhccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 152 GALMLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.. ..+.++++...+. .+.... +.+...+++.++++++.+.|++.+.++. |. .+
T Consensus 261 ~~--~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~ 318 (384)
T 1bs0_A 261 HL--IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLA-DS-------------------CS 318 (384)
T ss_dssp HH--HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEEC-SC-------------------CS
T ss_pred hh--hcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCccc-CC-------------------CC
Confidence 11 1122233332222 233333 3446667788999999999998876543 32 46
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
+++++.++.......+.+.+.. .|+ .+..+.. +.. ...++++|+|++ ...+++++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~------~~~--------------~~~~~~~Ri~~~-~~~~~~~i 373 (384)
T 1bs0_A 319 AIQPLIVGDNSRALQLAEKLRQ---QGC-WVTAIRP------PTV--------------PAGTARLRLTLT-AAHEMQDI 373 (384)
T ss_dssp SBCCEEEESHHHHHHHHHHHHH---TTE-ECCEECT------TSS--------------CTTCEEECCBCC-TTCCHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHH---CCc-EEEeecC------CCC--------------CCCCceEEEEEc-CCCCHHHH
Confidence 6888888755567778877764 243 2121111 100 112478999999 87777777
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+++
T Consensus 374 ~~~~~~l~~~ 383 (384)
T 1bs0_A 374 DRLLEVLHGN 383 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8777777654
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=214.60 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=161.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++..++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 129 ~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~n 202 (427)
T 3dyd_A 129 QAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-----SMGIEVKLYNLLPEKSWEIDLKQLEYLI-DEKTACLIVNNPSN 202 (427)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHSSC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHh-ccCCCEEEEECCCC
Confidence 57888999999999999999999999988774 267777766542 899999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCC---CcEEEeCCccccccCCCeeEEEEEcC---
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLG---ADVVVHSISKFISGGADIIAGAVCGP--- 139 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~---~d~~~~S~sK~~~~~g~r~~G~i~~~--- 139 (324)
|||.+.+ +++|+++|+++|+++|+|++|+++.... ...+ ..++++|+||.|+++|.|+ ||++++
T Consensus 203 ptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~ri-G~~~~~~~~ 281 (427)
T 3dyd_A 203 PCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRL-GWILIHDRR 281 (427)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCC-EEEEEECST
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcce-EEEEecCcc
Confidence 9999998 9999999999999999999997654221 1122 3488999999999999997 999876
Q ss_pred ----hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchh
Q 020548 140 ----ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHH 212 (324)
Q Consensus 140 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~ 212 (324)
+++.+.+...... ...++.+.+.++..++. ...++....+++.++++.+.+.|++. +..+..|.
T Consensus 282 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~------- 352 (427)
T 3dyd_A 282 DIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS------- 352 (427)
T ss_dssp TSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS-------
T ss_pred hhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC-------
Confidence 4577677655431 13333344444443443 23345667778899999999999998 44555454
Q ss_pred HHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHh
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 246 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l 246 (324)
.|.++++.++.. .+...+++.+
T Consensus 353 ------------~g~~~~~~l~~~~~~~~~~~~~~~~~l 379 (427)
T 3dyd_A 353 ------------GAMYLMVGIEMEHFPEFENDVEFTERL 379 (427)
T ss_dssp ------------BTTEEEEEECGGGCTTCSSHHHHHHHH
T ss_pred ------------eeEEEEEecCHhhcCCCCCHHHHHHHH
Confidence 577888888621 2345566555
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-27 Score=210.29 Aligned_cols=260 Identities=13% Similarity=0.149 Sum_probs=185.3
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--C---CceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--G---RTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--~---~~~~v~~~~~~nptG 77 (324)
|+..++++++++||+|+++.|+|+++...++ ..|.++..++..|++++++++++ + ++++|++++|+||||
T Consensus 117 a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG 191 (401)
T 1fc4_A 117 ANGGLFETLLGAEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDG 191 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----TSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTT
T ss_pred HHHHHHHHHcCCCCEEEEcchhHHHHHHHHH-----HcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCC
Confidence 5666777888999999999999988877663 37889989888899999998832 1 789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCC-cCCCC-c------cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-P------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~-~------~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.++++|.++|+++|+++|+||+|+ ++... . .. .++|++++|+||+++++. |||+++++++++.+.
T Consensus 192 ~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~---gG~~~~~~~~~~~l~ 268 (401)
T 1fc4_A 192 VIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKEVVEWLR 268 (401)
T ss_dssp EECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC---CEEEEcCHHHHHHHH
Confidence 99999999999999999999999994 66421 0 12 257999999999994322 499999999998887
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
...... ....++.....+.+...++. .+...+++.++++++.+.|++.+.++. |.
T Consensus 269 ~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~------------------- 326 (401)
T 1fc4_A 269 QRSRPY--LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLA-GA------------------- 326 (401)
T ss_dssp HHCHHH--HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBC-CS-------------------
T ss_pred HhCcCc--eeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCccc-CC-------------------
Confidence 654311 11223333333332222222 245667788999999999999876543 43
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.|+++++.+++......+.+.+.. .|+ .+..+.. +.. +..++++|+|++ ...+++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~------~~~--------------~~~~~~iRi~~~-~~~~~~ 381 (401)
T 1fc4_A 327 DHAIIPVMLGDAVVAQKFARELQK---EGI-YVTGFFY------PVV--------------PKGQARIRTQMS-AAHTPE 381 (401)
T ss_dssp SSSEEEEEEECHHHHHHHHHHHHH---TTE-ECCEECT------TSS--------------CTTCEEEEEECC-TTCCHH
T ss_pred CCCEEEEEcCChHHHHHHHHHHHH---CCc-EEeeecC------CCC--------------CCCCceEEEEeC-CCCCHH
Confidence 577999999765567778777764 243 2121111 100 112468999999 776677
Q ss_pred HHHHHHHHHHhhh
Q 020548 305 RWSQFEKALSRMQ 317 (324)
Q Consensus 305 ~~~~l~~~l~~~~ 317 (324)
+++.+.++|+++-
T Consensus 382 ~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 382 QITRAVEAFTRIG 394 (401)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777666666553
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=211.85 Aligned_cols=219 Identities=18% Similarity=0.160 Sum_probs=159.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc-----CCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~-----~~~~~v~~ 69 (324)
+|+..++.+++++||+|+++.|+|+++...+. ...|.++..++.+ |++++++++.+ .++++|++
T Consensus 122 ~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i 197 (435)
T 3piu_A 122 SANETFIFCLADPGEAVLIPTPYYPGFDRDLK----WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 197 (435)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT----TTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCccccHHHHHH----HhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57888999999999999999999999887652 1268888777753 79999999833 28999999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----------C---------CCCcEEEeCCcccccc
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA----------R---------LGADVVVHSISKFISG 127 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----------~---------~~~d~~~~S~sK~~~~ 127 (324)
++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+... + .+.+++++|+||.+|+
T Consensus 198 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~ 277 (435)
T 3piu_A 198 TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 277 (435)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCC
Confidence 999999999976 57888899999999999999965332110 1 2234899999999998
Q ss_pred CCCeeEEEEEc-ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 128 GADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 128 ~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
+|.|+ ||+++ ++++.+.+...... ...+.+.+..+..++..... +....+++.++++++.+.|++.+.++.
T Consensus 278 ~G~r~-G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 353 (435)
T 3piu_A 278 PGFRV-GAIYSNDDMVVAAATKMSSF---GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL 353 (435)
T ss_dssp GGGCE-EEEEESCHHHHHHHHHHGGG---SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC
T ss_pred CceeE-EEEEeCCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 89997 99988 56677777655441 22333344444444443332 334556678889999999998877655
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH------HHHHHHHHhh
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE------KANRLMNYLQ 247 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~------~~~~~~~~l~ 247 (324)
.|. .|.++++.++... ....+.+.+.
T Consensus 354 ~~~-------------------~g~~~~~~l~~~~~~~~~~~~~~~~~~l~ 385 (435)
T 3piu_A 354 NGN-------------------AGLFCWVDMRHLLRSNTFEAEMELWKKIV 385 (435)
T ss_dssp CCC-------------------SSSEEEEECGGGSSSSSHHHHHHHHHHHH
T ss_pred CCC-------------------eeEEEEEEcccccccCCchhHHHHHHHHH
Confidence 333 5678999987321 4556666654
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=212.18 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=160.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+++...++ ..|.++..++.+ |++++++++ ++++++|++++|+|
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~n 185 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEYRTIEEEDWQPDIDDIRKKI-TDRTKAIAVINPNN 185 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEEEGGGTSEECHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeecCCCcCCcCCHHHHHHhh-CcCceEEEEECCCC
Confidence 57888888889999999999999999988774 257776666542 799999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC--CCC-cEEEeCCccccccCCCeeEEEEE--cCh-
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--LGA-DVVVHSISKFISGGADIIAGAVC--GPA- 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~--~~~-d~~~~S~sK~~~~~g~r~~G~i~--~~~- 140 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+... ... .+. +++++|+||+++++|.|+ ||++ .++
T Consensus 186 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~ 264 (406)
T 1xi9_A 186 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL-GYMYFVDPEN 264 (406)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC-EEEEEECTTC
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEE-EEEEEecCch
Confidence 9999976 889999999999999999999655431 111 256 899999999999889997 9998 898
Q ss_pred ---hHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHH
Q 020548 141 ---NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELL 215 (324)
Q Consensus 141 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~ 215 (324)
++++.+...... . ...+.+.+.++..++. ....++...+++.++++.+.+.|++.+ ..+..|.
T Consensus 265 ~~~~l~~~l~~~~~~-~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---------- 332 (406)
T 1xi9_A 265 KLSEVREAIDRLARI-R-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ---------- 332 (406)
T ss_dssp TTHHHHHHHHHHHHH-T-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----------
T ss_pred hHHHHHHHHHHHHHh-h-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC----------
Confidence 899888776552 1 2223333333333443 323355666778899999999999873 3433222
Q ss_pred HHHhccCCCcceEEEEEeCC--HHHHHHHHHHhh
Q 020548 216 KSMANKEYGFGGLLCLDMET--EEKANRLMNYLQ 247 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~ 247 (324)
.|.++++.++. ..+..++.+.+.
T Consensus 333 ---------~~~~~~~~~~~~~~~~~~~l~~~l~ 357 (406)
T 1xi9_A 333 ---------GAFYIFPKIEVGPWKNDKEFVLDVL 357 (406)
T ss_dssp ---------BSSEECCEECSCSCSSHHHHHHHHH
T ss_pred ---------eeEEEEEecCccCCCCHHHHHHHHH
Confidence 35566667753 223456666553
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=212.20 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=160.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++ +++|++++|
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~-~~~v~i~~p 173 (391)
T 4dq6_A 101 PAISLLINELTKANDKIMIQEPVYSPFNSVVK-----NNNRELIISPLQKLENGNYIMDYEDIENKI-KD-VKLFILCNP 173 (391)
T ss_dssp HHHHHHHHHHSCTTCEEEECSSCCTHHHHHHH-----HTTCEEEECCCEECTTSCEECCHHHHHHHC-TT-EEEEEEESS
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHH-----HcCCeEEeeeeeecCCCceEeeHHHHHHHh-hc-CCEEEEECC
Confidence 57888899999999999999999999988874 367788777654 899999999 65 999999999
Q ss_pred CCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cCC-----CCcEEEeCCccccccCCCeeEEEEEc
Q 020548 73 SNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----P-ARL-----GADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 73 ~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~~-----~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+||||.+. ++++|+++|+++|+++|+||+|+.+... + ... +.++++.|+||+++++|.|+ ||++.
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~ 252 (391)
T 4dq6_A 174 HNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVL 252 (391)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEEC
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccce-EEEEe
Confidence 99999994 5889999999999999999999665432 1 122 34499999999999889997 99988
Q ss_pred Ch-hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHH
Q 020548 139 PA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 139 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~ 214 (324)
++ ++.+.+............+.+.+.++...+.. ..+++...+++.++++.+.+.|++ . +..+..|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------- 323 (391)
T 4dq6_A 253 PDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE--------- 323 (391)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS---------
T ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC---------
Confidence 75 88888877654211111222222222223322 223556667788999999999988 4 44554333
Q ss_pred HHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 215 LKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
.+.++|+.++. ..+...+.+.+..
T Consensus 324 ----------~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 324 ----------GTYLLWVDFSALGLSDEELESILVQ 348 (391)
T ss_dssp ----------BSSEEEEECGGGCCCHHHHHHHHHH
T ss_pred ----------ccEEEEEEhhhcCCCHHHHHHHHHH
Confidence 45566788863 2345667777664
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=212.15 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=185.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcC---CceEEEEecCCCCcccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG---RTKVLYFESISNPTLAV 79 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~---~~~~v~~~~~~nptG~~ 79 (324)
|+..++.+++++||.|+++.|+|.++...++ ..|.++..++..|+++|++++++. ++++|++++++||+|.+
T Consensus 136 a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~ 210 (427)
T 2w8t_A 136 ANLGIISTLAGKGEYVILDADSHASIYDGCQ-----QGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDI 210 (427)
T ss_dssp HHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-----HSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCc
Confidence 6677788889999999999999999988773 367888888888999999999432 78999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCCCCc--------c--CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
.|+++|+++|+++|+++|+||+|+.+.... . ..++|++++|+||++|++ |||+++++++++.+...
T Consensus 211 ~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~----gG~v~~~~~l~~~l~~~ 286 (427)
T 2w8t_A 211 APLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTV----GGFVVSNHPKFEAVRLA 286 (427)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSC----CEEEEECCTTGGGGGGT
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccC----CCEEEeCHHHHHHHHHh
Confidence 999999999999999999999995543221 1 225799999999999865 49999998888877654
Q ss_pred hhhhhhccCCCCCHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 150 HQGALMLLGPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
...+ ..+.+..+..++. .+..+..++...+++.++++++.+.|++.+..+..+. +.|
T Consensus 287 ~~~~--~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~ 346 (427)
T 2w8t_A 287 CRPY--IFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTET------------------CDS 346 (427)
T ss_dssp CHHH--HSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTCEESCSS------------------CCS
T ss_pred cccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCcccCCC------------------CCC
Confidence 2211 1122333332222 2322333456777889999999999998876544221 146
Q ss_pred eEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHH
Q 020548 227 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW 306 (324)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~ 306 (324)
+++++.+++......+.+.+.. .|+ .+..+. .|.. ....+++|+|++ ...+++++
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~---~Gi-~v~~~~------~~~~--------------~~~~~~lRi~~~-~~~t~e~i 401 (427)
T 2w8t_A 347 AIVAVMLEDQEQAAMMWQALLD---GGL-YVNMAR------PPAT--------------PAGTFLLRCSIC-AEHTPAQI 401 (427)
T ss_dssp SEEEEEESSHHHHHHHHHHHHH---TTE-ECEEEC------TTTS--------------CTTCEEEEEECC-TTCCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH---CCe-EEeeeC------CCCC--------------CCCCeEEEEEeC-CCCCHHHH
Confidence 7999999876667788888774 243 111111 1111 112468999999 76666666
Q ss_pred HHHHHHHHhh
Q 020548 307 SQFEKALSRM 316 (324)
Q Consensus 307 ~~l~~~l~~~ 316 (324)
+.+.++|+.+
T Consensus 402 ~~~~~~l~~~ 411 (427)
T 2w8t_A 402 QTVLGMFQAA 411 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=207.86 Aligned_cols=252 Identities=13% Similarity=0.118 Sum_probs=173.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC------HHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD------HEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.++ +||+|+++.|+|+++...++ ..|.++..++.+. ++++.+.+ ++++++|++++|+||
T Consensus 87 ~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~l~~~~~~~-~~~~~~v~i~~p~np 158 (364)
T 1lc5_A 87 ESIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLREADGWQLTDAILEAL-TPDLDCLFLCTPNNP 158 (364)
T ss_dssp HHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTTCCCTTHHHHC-CTTCCEEEEESSCTT
T ss_pred HHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-----HcCCeEEEEeCCcccccchhHHHHHhc-cCCCCEEEEeCCCCC
Confidence 5778888877 78999999999999988774 2677877776542 35455656 578899999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC---Ccc----CCCCcEEEeCCccccccCCCeeEEEEE-cChhHHH
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---SPA----RLGADVVVHSISKFISGGADIIAGAVC-GPANLVN 144 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~---~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~ 144 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+.. ... ..+.+++++|+||+++++|.|+ ||++ +++++++
T Consensus 159 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~ 237 (364)
T 1lc5_A 159 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRL-GYLVNSDDAAMA 237 (364)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCC-EEEECCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccce-EEEEECCHHHHH
Confidence 999988 88999999999999999999965542 112 2368899999999999889997 9999 9999998
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccCC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
.+...... +..+.+.+..+..++....+++...+++.++++++.+.|++. +..+. |.
T Consensus 238 ~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~------------------ 295 (364)
T 1lc5_A 238 RMRRQQMP---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PG------------------ 295 (364)
T ss_dssp HHHHHSCT---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CC------------------
T ss_pred HHHHhCCC---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CC------------------
Confidence 88776541 222223233333333332335566667788999999999987 33443 33
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH
Q 020548 224 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 303 (324)
Q Consensus 224 ~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~ 303 (324)
.|+++++.++.. ...+.+.+.. .|+ .+ .|+..+. +..++++|+|++ . .
T Consensus 296 -~g~~~~~~~~~~--~~~l~~~l~~---~gi-~v----------~~g~~~~-----------~~~~~~iRis~~-~---~ 343 (364)
T 1lc5_A 296 -RANYLLLRCERE--DIDLQRRLLT---QRI-LI----------RSCANYP-----------GLDSRYYRVAIR-S---A 343 (364)
T ss_dssp -SSSEEEEEESCT--TCCHHHHHHT---TTE-EC----------EECTTST-----------TCCTTEEEEECC-C---H
T ss_pred -CCeEEEEECCCc--HHHHHHHHHH---CCc-EE----------eeCcccC-----------CCCCCEEEEEeC-C---H
Confidence 466888988641 3345555553 233 21 2211110 123579999999 3 3
Q ss_pred HHHHHHHHHHHhh
Q 020548 304 QRWSQFEKALSRM 316 (324)
Q Consensus 304 ~~~~~l~~~l~~~ 316 (324)
++++.+.++|+.+
T Consensus 344 ~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 344 AQNERLLAALRNV 356 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555554
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=208.29 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=188.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+..++++++++||.|+++.|.|+++...+. ..|.++..++..|++++++++.+.++++|++++|+||||.+.+
T Consensus 130 ~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~ 204 (409)
T 3kki_A 130 NANVGLLQTICQPNTNVYIDFFAHMSLWEGAR-----YANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP 204 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTSCHHHHHHHH-----HTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCcCHHHHHHHH-----HcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC
Confidence 46777888899999999999999999988773 3688888888889999999994456899999999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVLSP--------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
+++|+++|+++|+++|+||+|+.....+ .. .++|+++.|+||+++++ +||+++++++++.+.....
T Consensus 205 l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~~~~~~~~~~ 280 (409)
T 3kki_A 205 LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEVNRCVPFISY 280 (409)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSGGGTHHHHCH
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHHHHHHHHhCc
Confidence 9999999999999999999995522110 11 15789999999999876 4999999988887776443
Q ss_pred hhhhccCCCCCHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL 228 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 228 (324)
.. ..+....+..++.+...++. .+...+++.++++++.+.|++.+..+. . .+++
T Consensus 281 ~~--~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~-------------------~~~~ 337 (409)
T 3kki_A 281 PA--IFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIR--S-------------------ESQI 337 (409)
T ss_dssp HH--HHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTCCCC--C-------------------SSSE
T ss_pred Cc--cccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCccC--C-------------------CCCE
Confidence 22 22223444333322222222 245566778999999999998865432 1 4678
Q ss_pred EEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH
Q 020548 229 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 308 (324)
Q Consensus 229 ~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~ 308 (324)
+++.++.......+.+.+.. .|+.. . ....|.. +...+++|++++ ...++++++.
T Consensus 338 ~~~~~~~~~~~~~~~~~L~~---~Gv~v-~------~~~~~~~--------------~~~~~~iRi~~~-~~~t~e~i~~ 392 (409)
T 3kki_A 338 IGLETGDERNTEKVRDYLES---NGVFG-S------VFCRPAT--------------SKNKNIIRLSLN-SDVNDEQIAK 392 (409)
T ss_dssp EEEEEESHHHHHHHHHHHHH---TTEEC-E------EECTTSS--------------CTTCEEEEEECC-TTCCHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCceE-e------eeCCCCc--------------CCCCcEEEEEcc-CCCCHHHHHH
Confidence 99999866667778777764 24321 1 1111111 123579999999 7777777777
Q ss_pred HHHHHHhhhhc
Q 020548 309 FEKALSRMQDS 319 (324)
Q Consensus 309 l~~~l~~~~~~ 319 (324)
+.++|+++-+.
T Consensus 393 ~~~~l~~~l~~ 403 (409)
T 3kki_A 393 IIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777665433
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=212.87 Aligned_cols=207 Identities=17% Similarity=0.140 Sum_probs=155.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---CHHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ +++++++++++|+||||.
T Consensus 92 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~ 165 (377)
T 3fdb_A 92 RGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-----ATQREGIFIDATGGINLHDVEKGF-QAGARSILLCNPYNPLGM 165 (377)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-----HHTCCEEEEECTTSCCHHHHHHHH-HTTCCEEEEESSBTTTTB
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEccCCCCCCHHHHHHHh-ccCCCEEEEeCCCCCCCC
Confidence 57888899999999999999999999988774 267888888776 899999999 777999999999999999
Q ss_pred ccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----cC------CCCcEEEeCCccccccCCCeeEEEEEc-ChhHHH
Q 020548 79 VAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----AR------LGADVVVHSISKFISGGADIIAGAVCG-PANLVN 144 (324)
Q Consensus 79 ~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----~~------~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~ 144 (324)
+.+ +++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||.+|++|.|+ ||++. ++++.+
T Consensus 166 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~ 244 (377)
T 3fdb_A 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKC-AQIIFSNPSDAE 244 (377)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCC-EEEECCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhh-eEEEeCCHHHHH
Confidence 975 6677888999999999999996654322 11 135599999999999899997 98765 788888
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhC--CCceeCCCCCCCchhHHHHHHhcc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.+..... ......+.+.+.++...+.. ..+++...+++.++++++.+.|++. +..+..|.
T Consensus 245 ~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 307 (377)
T 3fdb_A 245 HWQQLSP-VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ---------------- 307 (377)
T ss_dssp HHHHSCH-HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS----------------
T ss_pred HHHHHHH-hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----------------
Confidence 8877554 11122233333333333332 2335666777899999999999984 45554333
Q ss_pred CCCcceEEEEEeCC
Q 020548 222 EYGFGGLLCLDMET 235 (324)
Q Consensus 222 ~~~~g~~~~~~l~~ 235 (324)
.+.++++.++.
T Consensus 308 ---~~~~~~~~~~~ 318 (377)
T 3fdb_A 308 ---ATYLMWIDFRD 318 (377)
T ss_dssp ---BCSEEEEECTT
T ss_pred ---eeEEEEEECcc
Confidence 45566888873
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=209.58 Aligned_cols=217 Identities=20% Similarity=0.268 Sum_probs=161.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC------HHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD------HEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d------~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++.++ +++|++++ ++++++|++++|+||
T Consensus 113 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~l~~~l-~~~~~~v~~~~p~np 186 (409)
T 2gb3_A 113 EAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLIPVTRRMEEGFAIPQNLESFI-NERTKGIVLSNPCNP 186 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEEEEECCGGGTSCCCTTGGGGC-CTTEEEEEEESSCTT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeccCCCCCCccHHHHHHhh-CcCCeEEEECCCCCC
Confidence 57888888889999999999999999988773 3677887777642 67888888 678999999999999
Q ss_pred ccccc---ChHHHHHHHHhcCCEEEEcCCCCcCCCC----c-c-C-CCCcEEEeCCccccccCCCeeEEEEEcCh-hHHH
Q 020548 76 TLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS----P-A-R-LGADVVVHSISKFISGGADIIAGAVCGPA-NLVN 144 (324)
Q Consensus 76 tG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~~~----~-~-~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~ 144 (324)
||.+. ++++|+++|+++|+++|+|++|+.+... + . . .++|++++|+||+++++|.|+ ||++.++ ++++
T Consensus 187 tG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~ 265 (409)
T 2gb3_A 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARV-GCLITRNEELIS 265 (409)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceE-EEEEECcHHHHH
Confidence 99996 4889999999999999999999655321 1 2 1 267999999999998889997 9999988 8988
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCce-eCCCCCCCchhHHHHHHhccC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+....... ...+.+.+..+..++.. ...++...+++.++++.+.+.|++.+..+ ..|.
T Consensus 266 ~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------- 326 (409)
T 2gb3_A 266 HAMKLAQGR--LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS----------------- 326 (409)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS-----------------
T ss_pred HHHHHHhcc--CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCC-----------------
Confidence 887765521 12222333333334432 22355566777899999999999886554 3333
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++++.+++ .+...+.+.+.
T Consensus 327 --~~~~~~~~~~~-~~~~~l~~~l~ 348 (409)
T 2gb3_A 327 --GAFYITAELPV-EDAEEFARWML 348 (409)
T ss_dssp --BSSEEEEECSS-SCHHHHHHHHH
T ss_pred --eeEEEEEEeCC-CCHHHHHHHHH
Confidence 46677888862 23455666655
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=209.32 Aligned_cols=256 Identities=12% Similarity=0.083 Sum_probs=176.8
Q ss_pred chHHHHHHHccCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHH----HHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE----MVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~----~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++ ||+|+++.|+|+++...++ ..|.++.+++.++-+ ++++++ .+++++|++++|+||
T Consensus 93 ~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~p~np 166 (376)
T 3ezs_A 93 EVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-----FIKAKSLLMPLTKENDFTPSLNEKE-LQEVDLVILNSPNNP 166 (376)
T ss_dssp HHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTSCCCCCHHH-HHHCSEEEECSSCTT
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-----HcCCEEEEcccCCCCCcchhHHhhh-ccCCCEEEEcCCCCC
Confidence 5788889999999 9999999999999988774 368888888764221 566666 567899999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc---------CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA---------RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~---------~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||.+.+ +++|+++|+++|+++|+||+|+.+... .. ..+.++++.|+||++|++|.|+ ||+++
T Consensus 167 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~ 245 (376)
T 3ezs_A 167 TGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRS-GFIAG 245 (376)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCC-EEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcccee-EEEee
Confidence 999986 667788899999999999999665431 11 3578899999999999889997 99999
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++++.+...... .....+.+.+.++...+.....++...+++.++++.+.+.|+ +.. .|.
T Consensus 246 ~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~------------- 307 (376)
T 3ezs_A 246 DSRLLEKYKAFRAY-LGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK--NTL--IYP------------- 307 (376)
T ss_dssp CHHHHHHHHHHHTT-TCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST--TCC--CCS-------------
T ss_pred CHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc--CCC--CCC-------------
Confidence 99999998876551 112222233333333444444466667777888899988887 332 233
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
.|.++++.+++ ...+.+.+.. +.|+ .+..|.... . .+..++++|+|++
T Consensus 308 ------~~~~~~~~~~~---~~~~~~~l~~--~~gi-~v~~g~~~~------~-------------~~~~~~~iRis~~- 355 (376)
T 3ezs_A 308 ------YSFYVYLPVQN---GENFAKTLYQ--NEGI-ITLPALYLG------R-------------NRIGADYVRLALV- 355 (376)
T ss_dssp ------BSSEEEEECSC---HHHHHHHHHH--HHCC-BCEEGGGGC------S-------------TTTTTTEEEEECC-
T ss_pred ------cceEEEEECCC---HHHHHHHHHH--hCCE-EEeCcHHhC------C-------------CCCCCCeEEEEEc-
Confidence 67789999973 3445555442 1232 222222110 0 0123589999998
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
. +++.++.+.++|+.+
T Consensus 356 ~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 356 Y--DTPLLEKPLEIIETY 371 (376)
T ss_dssp S--CHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHH
Confidence 5 444455555555443
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=214.19 Aligned_cols=219 Identities=11% Similarity=0.074 Sum_probs=160.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcc-cceeEEEecC------CCHHHHHHhhhcC---CceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA-CNITTTFVDI------SDHEMVNSAIVQG---RTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~-~g~~~~~~~~------~d~~~l~~~l~~~---~~~~v~~~~ 71 (324)
+|+..++++++++||+|+++.|+|+++...+ +. .|.++..++. .|++++++++ ++ +++++++++
T Consensus 124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~-----~~~~g~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~ 197 (430)
T 2x5f_A 124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVF-----NTRNGANLQTYPIFDKDGHYTTDSLVEAL-QSYNKDKVIMILNY 197 (430)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHH-----TTTTCCEEEEECCBCTTSCBCSHHHHHHH-HHCCSSEEEEEECS
T ss_pred HHHHHHHHHHhCCCCEEEEcCCcCccHHHHH-----HHhcCCeEEEEeccCccCCcCHHHHHHHH-HhcCCCCEEEEEcC
Confidence 5788899999999999999999999998877 33 5777777764 2789999998 44 789999999
Q ss_pred CCCCcccccC---hHHHHHHHHh-----cCCEEEEcCCCCcCCCC-----cc-----C-CCC---cEEEeCCccccccCC
Q 020548 72 ISNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPLVLS-----PA-----R-LGA---DVVVHSISKFISGGA 129 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~-----~~~~~ivD~~~~~~~~~-----~~-----~-~~~---d~~~~S~sK~~~~~g 129 (324)
|+||||.+.+ +++|+++|++ +|+++|+||+|+.+... +. . .+. +++++|+||+++++|
T Consensus 198 p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 277 (430)
T 2x5f_A 198 PNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG 277 (430)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC
Confidence 9999999987 8899999999 99999999999665321 21 1 356 789999999999889
Q ss_pred CeeEEEEEc---ChhHHHHHHHhhhhh---hhccCCCCCHHHHHHHhc-CcccHHH---HHHHHHHHHHHHHHHHH----
Q 020548 130 DIIAGAVCG---PANLVNSMMDLHQGA---LMLLGPTMNPKVAFELSE-RIPHLGL---RMKEHCHRALIFARRMK---- 195 (324)
Q Consensus 130 ~r~~G~i~~---~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~l~~~L~---- 195 (324)
.|+ ||++. ++++++.+....... .....+.+.+.++..++. ...+.+. ..+++.++++.+.+.|+
T Consensus 278 ~ri-G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 356 (430)
T 2x5f_A 278 FRV-GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQY 356 (430)
T ss_dssp GCC-EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred CCe-EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 997 99999 999988887655410 112223333333333443 3223333 66667889999999998
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+.+..+..|. .|.++++.++ ..+...+.+.+.
T Consensus 357 ~~g~~~~~~~-------------------~g~~~~~~~~-~~~~~~~~~~l~ 388 (430)
T 2x5f_A 357 HSHWQAYDFN-------------------SGYFMAIKVH-DVDPEALRKHLI 388 (430)
T ss_dssp TTTEEECCCC-------------------BSSEEEEEES-SSCHHHHHHHHH
T ss_pred CCCceeeCCC-------------------ceEEEEeCCC-CCCHHHHHHHHH
Confidence 4444443332 4567899997 223455666654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=210.68 Aligned_cols=219 Identities=13% Similarity=0.040 Sum_probs=158.4
Q ss_pred chH--HHHHHHccC--C----------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCC
Q 020548 2 SAI--SSVLMQLCS--S----------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai--~~~~~~~~~--~----------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~ 63 (324)
+|+ ..+++++++ | ||+|++++|+|+++...++ ..|.++..++.+ |++++++++++++
T Consensus 106 ~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~ 180 (427)
T 3ppl_A 106 LNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITE-----RFGFEMISVPMNEDGPDMDAVEELVKNPQ 180 (427)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----HTTCEEEEEEEETTEECHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHH-----HcCCEEEEeCCCCCCCCHHHHHHHHhcCC
Confidence 356 467777776 6 9999999999999998884 367777777653 8999999994478
Q ss_pred ceEEEEe-cCCCCcccccChH---HHHHHH-HhcCCEEEEcCCCCcCCCC--c------c-------CCCCcEEEeCCcc
Q 020548 64 TKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPLVLS--P------A-------RLGADVVVHSISK 123 (324)
Q Consensus 64 ~~~v~~~-~~~nptG~~~~~~---~i~~l~-~~~~~~~ivD~~~~~~~~~--~------~-------~~~~d~~~~S~sK 123 (324)
+++|+++ ++|||||.+.+.+ +|+++| +++|+++|+||+|+.+.+. + . ..+.+++++|+||
T Consensus 181 ~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 260 (427)
T 3ppl_A 181 VKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSK 260 (427)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTT
T ss_pred CeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhh
Confidence 9999876 7999999998866 888888 9999999999999664221 1 1 2367899999999
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhC--
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKL-- 197 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~-- 197 (324)
+ +++|.|+ ||+++++++++.+..... ......+.+.+..+..++.... .+....+.+.++++.+.+.|++.
T Consensus 261 ~-~~~G~r~-G~~~~~~~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~ 337 (427)
T 3ppl_A 261 I-TLAGAGV-SFFLTSAENRKWYTGHAG-IRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLA 337 (427)
T ss_dssp T-SCTTSSC-EEEECCHHHHHHHHHHHH-HHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred c-cCcCccE-EEEEcCHHHHHHHHHHhh-cccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 6789997 999999999998887665 1123334444445444554422 23344555677778888877652
Q ss_pred ---CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 198 ---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 198 ---~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+..+..|. +|.++|+.++.. +...+.+.+..
T Consensus 338 ~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~~ 371 (427)
T 3ppl_A 338 EYGVAQWTVPA-------------------GGYFISLDVVPG-TASRVAELAKE 371 (427)
T ss_dssp GGTCCEECCCS-------------------BSSCEEEECSTT-CHHHHHHHHHH
T ss_pred CCCceEEeCCC-------------------ccEEEEEECCcc-hHHHHHHHHHH
Confidence 23444444 588999999743 35556666653
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=212.61 Aligned_cols=221 Identities=17% Similarity=0.140 Sum_probs=161.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++..++.+ |++++++++.++++++|++++|+
T Consensus 130 ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~ 204 (421)
T 3l8a_A 130 PAISIALQAFSEKGDAVLINSPVYYPFARTIR-----LNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPH 204 (421)
T ss_dssp HHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-----HTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSB
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCC
Confidence 47889999999999999999999999988774 257777776642 89999999943899999999999
Q ss_pred CCcccc---cChHHHHHHHHhcCCEEEEcCCCCcCCCC-----c-cC-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS-----P-AR-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~-~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||+|.+ .++++|+++|+++|+++|+||+|+++... + .. .+.++++.|+||+++++|.++ |+++.+
T Consensus 205 nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~ 283 (421)
T 3l8a_A 205 NPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQ 283 (421)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcC
Confidence 999998 46889999999999999999999665421 1 11 145699999999999889997 999887
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHH
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~ 216 (324)
+++.+.+...........++.+.+.++..++. ...+++...+++.++++++.+.|++. +..+..|.
T Consensus 284 ~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~----------- 352 (421)
T 3l8a_A 284 NESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE----------- 352 (421)
T ss_dssp SHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS-----------
T ss_pred CHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC-----------
Confidence 88888887765421111222222233333333 22335666677889999999999986 44555443
Q ss_pred HHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 217 SMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
++.+.|+.++. ..+...+.+.+.
T Consensus 353 --------~~~~~~v~~~~~~~~~~~l~~~l~ 376 (421)
T 3l8a_A 353 --------GTYLVWLDFSAYAIAQPQLSEKLQ 376 (421)
T ss_dssp --------BSSEEEEECGGGTCCTTHHHHHHH
T ss_pred --------eeEEEEEeccccCCCHHHHHHHHH
Confidence 45566788863 123445666553
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=205.87 Aligned_cols=220 Identities=18% Similarity=0.143 Sum_probs=155.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++.+.++++|++++|+
T Consensus 98 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~ 172 (390)
T 1d2f_A 98 YMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-----GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ 172 (390)
T ss_dssp HHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-----HCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCC
Confidence 57888999999999999999999999988874 25777766654 489999999933489999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCC--C-cEEEeCCccccccCCCeeEEEEEcC-h
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLG--A-DVVVHSISKFISGGADIIAGAVCGP-A 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~--~-d~~~~S~sK~~~~~g~r~~G~i~~~-~ 140 (324)
||||.+.+ +++|+++|+++|+++|+||+|+.+... ...++ . |. +.|+||+++++|.|+ ||++.+ +
T Consensus 173 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~ 250 (390)
T 1d2f_A 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG-AYGIIENS 250 (390)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC-EEEEECSH
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhh-eEEEECCH
Confidence 99999976 789999999999999999999665321 11222 2 67 999999998889997 999874 7
Q ss_pred hHHHHHHHhhhhhhhccCCC-CCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPT-MNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~~~ 216 (324)
++.+.+.....+....++.+ +.+.++..++.. ...++...+++.++++.+.+.|++ . +..+..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------- 319 (390)
T 1d2f_A 251 SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ----------- 319 (390)
T ss_dssp HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS-----------
T ss_pred HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCC-----------
Confidence 88887766543000111222 222222223322 223555666778899999999988 5 33433222
Q ss_pred HHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 217 SMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
++.++++.++.. .+...+.+.+.
T Consensus 320 --------~~~~~~~~~~~~~~~~~~l~~~l~ 343 (390)
T 1d2f_A 320 --------STYLAWLDLRPLNIDDNALQKALI 343 (390)
T ss_dssp --------BCSEEEEECGGGCCCHHHHHHHHH
T ss_pred --------ccEEEEEEccccCCCHHHHHHHHH
Confidence 355668888632 23456666665
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=203.92 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=175.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.++ |+|+++.|+|+++...++ ..|.++..++.+ +++++++++ ++ +++|++++|+|||
T Consensus 89 ~al~~~~~~~----d~vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~v~i~~p~npt 157 (361)
T 3ftb_A 89 EIIELSISLF----EKILIIVPSYAEYEINAK-----KHGVSVVFSYLDENMCIDYEDIISKI-DD-VDSVIIGNPNNPN 157 (361)
T ss_dssp HHHHHHHTTC----SEEEEEESCCTHHHHHHH-----HTTCEEEEEECCTTSCCCHHHHHHHT-TT-CSEEEEETTBTTT
T ss_pred HHHHHHHHHc----CcEEEecCChHHHHHHHH-----HcCCeEEEeecCcccCCCHHHHHHhc-cC-CCEEEEeCCCCCC
Confidence 4666666665 999999999999988874 368888887753 679999999 66 9999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC----cc----CCCCcEEEeCCccccccCCCeeEEEEE-cChhHHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----PA----RLGADVVVHSISKFISGGADIIAGAVC-GPANLVN 144 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~----~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~ 144 (324)
|.+.+ +++|+++|+++|+++|+|++|+++... +. ..+.+++++|+||.++++|.|+ ||++ .++++.+
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-g~~~~~~~~~~~ 236 (361)
T 3ftb_A 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRF-GYGITNNKEIAA 236 (361)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCC-EEEEESCHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcce-eEEEeCCHHHHH
Confidence 99985 667888888999999999999655431 11 1256699999999999889997 9987 8999999
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-c-eeCCCCCCCchhHHHHHHhccC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-K-VLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~-~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+...... +..+.+.+..+..++....+++...+++.++++++.+.|++.+. . +. +.
T Consensus 237 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~----------------- 295 (361)
T 3ftb_A 237 KIKAKQNP---WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SP----------------- 295 (361)
T ss_dssp HHHTTSCT---TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CC-----------------
T ss_pred HHHhhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CC-----------------
Confidence 88766541 22222222233333333333556667789999999999999854 4 43 33
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCH
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 302 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~ 302 (324)
.|+++++.++. .+...+.+.+.. .|+ .++.| ..+. +..++++|+|++ .
T Consensus 296 --~~~~~~~~~~~-~~~~~l~~~l~~---~gi-~v~~g----------~~~~-----------~~~~~~iRis~~-~--- 343 (361)
T 3ftb_A 296 --HANFVLCRLEN-ISGEKLYDSLLK---EDI-VIRRC----------CNFI-----------GLDDSFVRFAIK-D--- 343 (361)
T ss_dssp --SSSEEEEEESS-SCHHHHHHHHHT---TTE-ECEEC----------TTST-----------TCCTTEEEEECC-C---
T ss_pred --CCeEEEEEcCC-CCHHHHHHHHHH---CCe-EEeeC----------ccCC-----------CCCCCEEEEEcC-C---
Confidence 46788999875 335567777664 233 22222 1110 223589999999 3
Q ss_pred HHHHHHHHHHHHhhh
Q 020548 303 DQRWSQFEKALSRMQ 317 (324)
Q Consensus 303 ~~~~~~l~~~l~~~~ 317 (324)
.+.++.+.++++.+.
T Consensus 344 ~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 344 EKKNTKFLRALKGVE 358 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333455666665553
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=209.28 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=155.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++ +++++++++++|+|
T Consensus 115 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~n 188 (416)
T 1bw0_A 115 HGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIGMHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSN 188 (416)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-----HcCcEEEEeecCcccCCCCCHHHHHHHh-ccCCeEEEEeCCCC
Confidence 57888899999999999999999999988774 26777766653 2799999999 77899999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc----------cCC---CCcEEEeCCccccccCCCeeEEEEEc
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARL---GADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~----------~~~---~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|||.+.+ +++|+++|+++|+++|+|++|+.+.... ..+ +.+++++|+||+|+++|.|+ ||+++
T Consensus 189 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~-G~~~~ 267 (416)
T 1bw0_A 189 PCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLY 267 (416)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEE
T ss_pred CCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceE-EEEEe
Confidence 9999998 8999999999999999999996553211 111 24688999999999999997 99987
Q ss_pred Ch--hHHHHHHHhh-h-hhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 139 PA--NLVNSMMDLH-Q-GALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 139 ~~--~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
++ ++++.+.... . .......+.+.+.++..++.. ...++...+++.++++.+.+.|++. +..+..|.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~------ 341 (416)
T 1bw0_A 268 VDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR------ 341 (416)
T ss_dssp ECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC------
T ss_pred eCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC------
Confidence 65 3444443211 1 001122233333333334432 2335566777889999999999887 33443333
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCH-----HHHHHHHHHh
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 246 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l 246 (324)
.|.++++.++.. .+...+.+.+
T Consensus 342 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (416)
T 1bw0_A 342 -------------GAMYLMSRIDLEKYRDIKTDVEFFEKL 368 (416)
T ss_dssp -------------BTTEEEEEECGGGBSSCCSHHHHHHHH
T ss_pred -------------eeEEEEEeCCHHHcCCCCCHHHHHHHH
Confidence 467888888521 2345566654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=207.88 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=180.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|++ +...++ ..|.++..++. .|++++++++ ++ ++++|++++|+
T Consensus 96 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~ 169 (393)
T 1vjo_A 96 AAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG-----RYGADVRTISKPWGEVFSLEELRTAL-ETHRPAILALVHAE 169 (393)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEE
T ss_pred HHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH-----HcCCceEEEecCCCCCCCHHHHHHHH-hhCCceEEEEeccC
Confidence 57888888889999999999999998 666553 26788877774 4899999999 66 89999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh-
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH- 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~- 150 (324)
||||.+.|+++|.++|+++|+++|+|++|+ + ...+....++|++++|+||++++++ ++ |+++.++++++.+....
T Consensus 170 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~-~~-G~l~~~~~~~~~~~~~~~ 247 (393)
T 1vjo_A 170 TSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSP-GA-SPFTMSSRAIEKLQRRRT 247 (393)
T ss_dssp TTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCS-SC-EEEEECHHHHHHHHTCSS
T ss_pred CCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCC-ce-EEEEECHHHHHHHhccCC
Confidence 999999999999999999999999999995 1 1122223478999999999998876 86 99999999888774320
Q ss_pred ---hh------------hhhccCCCCCHHH---HHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 151 ---QG------------ALMLLGPTMNPKV---AFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 151 ---~~------------~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
.. ......++++... +..++... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----- 322 (393)
T 1vjo_A 248 KVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK----- 322 (393)
T ss_dssp CCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG-----
T ss_pred CCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCc-----
Confidence 00 0011111333322 22223221 12456677789999999999998866554332
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
. ...+.++++.++...+...+.+.+.. ++|+ .+..|. .. ..++
T Consensus 323 ----------~-~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi-~v~~g~----------~~-------------~~~~ 365 (393)
T 1vjo_A 323 ----------E-YRLPTLTTVCIPDGVDGKAVARRLLN--EHNI-EVGGGL----------GE-------------LAGK 365 (393)
T ss_dssp ----------G-GBCSSEEEEECCTTCCHHHHHHHHHH--HHCE-ECEECC----------GG-------------GTTT
T ss_pred ----------c-ccCCcEEEEEcCCCCCHHHHHHHHHh--hCCE-EEecCc----------cc-------------cCCC
Confidence 0 01346888888633345567666653 1233 222221 10 0247
Q ss_pred eEEEE-eccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMS-VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s-~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++|+| ++ ..+.++.++.+.++|+.+
T Consensus 366 ~iRis~~~-~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 366 VWRVGLMG-FNSRKESVDQLIPALEQV 391 (393)
T ss_dssp EEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred EEEEeCCc-cCChHHHHHHHHHHHHHH
Confidence 89999 46 555555566666666543
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=209.76 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=184.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec--CC-----CHHHHHHhhhc----CCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD--IS-----DHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~--~~-----d~~~l~~~l~~----~~~~~v~~~ 70 (324)
+|+..++.+++++||+|++++|+|+++...++ ..|.++..++ .+ |++++++++.+ +++++|+++
T Consensus 80 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 80 EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-----HcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 57888899889999999999999999988763 3788888888 54 89999999932 689999999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH-HH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-MM 147 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~-l~ 147 (324)
+|+||||.+.|+++|.++|+++|+++|+|++|+.... +....++|++++|+||+++++ .++ ||++.++++++. +.
T Consensus 155 ~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~-~~~-G~~~~~~~~~~~~~~ 232 (371)
T 2e7j_A 155 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS-GPI-GVMGMKEEWAEIVLR 232 (371)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCC-SSC-EEEEECTTTTTTTTC
T ss_pred CCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCC-CCc-EEEEEechhhhhhcc
Confidence 9999999999999999999999999999999954432 233347899999999999875 486 999999887776 64
Q ss_pred Hhhhhhhhc---cCCCCCHHHHHHHhcCcccHH-HHHHHH--HHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 148 DLHQGALML---LGPTMNPKVAFELSERIPHLG-LRMKEH--CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 148 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
....+.... ..+++.....+.+...++.+. ...++. .++++++.+.|++.+.++..|..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--------------- 297 (371)
T 2e7j_A 233 RSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNP--------------- 297 (371)
T ss_dssp BCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSS---------------
T ss_pred ccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC---------------
Confidence 433211110 022222222211111222222 344556 78899999999988666554420
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhc---CCCCCeEE-EEec
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA---GISAGLVR-MSVG 297 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iR-~s~g 297 (324)
+.++++++.++ +...+.+.+.. .|+.. .| . .... |.+++++| +|++
T Consensus 298 --~~~~~~~~~~~---~~~~~~~~l~~---~gi~~-----------~~-~----------~~~~~~~g~~~~~iRii~~~ 347 (371)
T 2e7j_A 298 --HNHDLMFFHAE---VLYEISKKAKG---GRFFL-----------YR-E----------LKSRKIHGIKPGLTRYFKLS 347 (371)
T ss_dssp --CCSSEEEEECH---HHHHHHHHSSS---GGGHH-----------HH-H----------HHHTTEECSCTTCCSEEEEE
T ss_pred --ccCceEEEECC---CHHHHHHHHHH---CCEEE-----------Ee-c----------cccccccCCCCCceEEEEee
Confidence 13668999985 46677777763 34311 11 0 0011 33368899 9999
Q ss_pred cCC-CHHHHHHHHHHHHHhhh
Q 020548 298 YLG-TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 298 ~~~-~~~~~~~~l~~~l~~~~ 317 (324)
.. .++++++.+.++|+++-
T Consensus 348 -~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 348 -TYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp -CTTCCHHHHHHHHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHHHHHH
Confidence 76 67777777777776653
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=204.64 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=152.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhc---CCce-EEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQ---GRTK-VLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~---~~~~-~v~~~~ 71 (324)
+|+..+++++++|||+|+++.|+|+++...++ ..|.++..++.. |++++++++.+ ++++ ++++++
T Consensus 113 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~ 187 (418)
T 3rq1_A 113 GGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-----DTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNT 187 (418)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeC
Confidence 57888999999999999999999999988774 368888887752 79999999833 1555 888899
Q ss_pred C-CCCcccccChH---HHHHHHH------hcCCEEEEcCCCCcCCCCc------cC----CCC---cEEEeCCccccccC
Q 020548 72 I-SNPTLAVANIP---ELSRLAH------DKGVTVVVDNTFSPLVLSP------AR----LGA---DVVVHSISKFISGG 128 (324)
Q Consensus 72 ~-~nptG~~~~~~---~i~~l~~------~~~~~~ivD~~~~~~~~~~------~~----~~~---d~~~~S~sK~~~~~ 128 (324)
| +||||.+.+.+ +|+++|+ ++|+++|+||+|.++.... .. ... .++++|+||.++++
T Consensus 188 p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 267 (418)
T 3rq1_A 188 PGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMY 267 (418)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCc
Confidence 9 99999998755 5555666 8999999999996665321 11 122 38889999999999
Q ss_pred CCeeEEEEEc---ChhHHHHHHHhhhhhhhcc---CCCCCHHHHHHHhcCcc----c---HHHHHHHHHHHHHHHHHHHH
Q 020548 129 ADIIAGAVCG---PANLVNSMMDLHQGALMLL---GPTMNPKVAFELSERIP----H---LGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 129 g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~L~ 195 (324)
|+|+ ||+++ ++++++.+........... .+.+.+.++..++.... + .....+++.++++.+.+.|+
T Consensus 268 G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 346 (418)
T 3rq1_A 268 GQRV-GAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAA 346 (418)
T ss_dssp SSCC-EEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-eEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 99988 8999998887654211111 12222223333333321 1 12334567888899999999
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
+.+.++..|. .|.++++.+.+ ..++.+.+.
T Consensus 347 ~~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~l~ 376 (418)
T 3rq1_A 347 QVGLPMLPYR-------------------GGFFITIPTDS---ANAICEELK 376 (418)
T ss_dssp HHTCCCCCCC-------------------SSSEEEEECTT---HHHHHHHHH
T ss_pred hcCCCCCCCC-------------------ceEEEEcCCCC---HHHHHHHHH
Confidence 8876554333 46677777754 344555554
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=214.37 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=151.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee----------EEEecCCCHHHHHHhhhc-CCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT----------TTFVDISDHEMVNSAIVQ-GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~----------~~~~~~~d~~~l~~~l~~-~~~~~v~~~ 70 (324)
+++..+ .+++++||+|++++|+|+++...++. .|.+ +..++.++.+.+...+.+ +++++|+++
T Consensus 143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~-----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 216 (449)
T 3qgu_A 143 CDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVM-----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFC 216 (449)
T ss_dssp HHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHH-----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEE
T ss_pred HHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHH-----cCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEe
Confidence 466766 77889999999999999999988842 4555 666665432222222212 578999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+.+.... .. .+.++++.|+||++|++|.|+ ||++
T Consensus 217 ~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~ 295 (449)
T 3qgu_A 217 SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRL-GWTV 295 (449)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCC-EEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcccee-EEEe
Confidence 99999999975 7788889999999999999996654321 11 146799999999999899997 9999
Q ss_pred cChhHHH--------HHHHhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 138 GPANLVN--------SMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 138 ~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
+++++++ .+..... .....++.+.+.++..++.. ..+++...+++.++++++.+.|++.+..+..|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 372 (449)
T 3qgu_A 296 VPKALKYANGEPVHADWNRVMT-TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD-- 372 (449)
T ss_dssp CCTTCBCTTSCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS--
T ss_pred cCHHHHhhhhhhHHHHHHHHhh-cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC--
Confidence 9887765 3333332 11112233333333333322 233556677789999999999999887665443
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.|.++|+.++ ..+..++.+.+.
T Consensus 373 -----------------~~~~~~~~~~-~~~~~~~~~~l~ 394 (449)
T 3qgu_A 373 -----------------DAPYIWVGFP-GKPSWDVFAEIL 394 (449)
T ss_dssp -----------------SSSEEEEECT-TSCHHHHHHHHH
T ss_pred -----------------CeeEEEEECC-CCCHHHHHHHHH
Confidence 5778999997 223445555544
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=199.66 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=178.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+. ++.+++++||+|++++|+|++.. +...... .|.++..++.+ |++++++++.+.++++|++++++|||
T Consensus 65 ~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 140 (384)
T 3zrp_A 65 SAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKR-YPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETST 140 (384)
T ss_dssp HHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTT-SSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTT
T ss_pred HHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHH-cCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4677 77888999999999999997632 1122223 78888888865 89999999944489999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHH--------
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-------- 146 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l-------- 146 (324)
|.+.|+++|.++|+++|+++|+|++|+.. ..+....++|++++|+||+++++ ..+ |+++.++++++.+
T Consensus 141 G~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~-~g~-g~~~~~~~~~~~~~~~~~~~~ 218 (384)
T 3zrp_A 141 GVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSA-AGL-GLLLLSPKALSILDSQNSIAG 218 (384)
T ss_dssp TEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCC-SSE-EEEEECHHHHHHHHHCCCSCC
T ss_pred ceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCC-Cce-EEEEECHHHHHHhcCCCCCCc
Confidence 99999999999999999999999998432 22334457999999999998643 234 9999999988777
Q ss_pred -----HHhhhhhhh------ccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 147 -----MDLHQGALM------LLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 147 -----~~~~~~~~~------~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
......... ...+++...... ..+... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----- 293 (384)
T 3zrp_A 219 YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARR----- 293 (384)
T ss_dssp STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSS-----
T ss_pred ccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCc-----
Confidence 222221100 001122322211 122211 12556677788999999999999866544332
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
.....+.++++.+++ .+...+.+.+.. .|+ .+..|.. .. .+
T Consensus 294 ----------~~~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~----------------------~~--~~ 334 (384)
T 3zrp_A 294 ----------PESYSNTVTGVILKV-ADPQKVLAGTVN---EGV-EFAPGVH----------------------PA--FK 334 (384)
T ss_dssp ----------GGGBCSSEEEEECSS-SCHHHHHHHHHT---TTC-CCEECCC----------------------TT--CC
T ss_pred ----------ccccCccEEEEECCC-CCHHHHHHHHHH---CCE-EEecCCC----------------------CC--cC
Confidence 001246788899875 445677777764 233 2222210 01 17
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++|+|++ ..+++++++.+.++|+++
T Consensus 335 ~iRi~~~-~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 335 YFRIGHM-GWVTPNDAIIAISVIERT 359 (384)
T ss_dssp EEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred EEEEecc-ccCCHHHHHHHHHHHHHH
Confidence 8999999 766666666666665544
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=208.55 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=145.0
Q ss_pred chHHHHHHHcc-CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcC-----CceEEE
Q 020548 2 SAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQG-----RTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~-----~~~~v~ 68 (324)
+|+..++++++ ++||+|+++.|+|+++...++ ..|.++..++. .|+++|++++++. ++++|+
T Consensus 168 ~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~iv 242 (500)
T 3tcm_A 168 PGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-----LHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALV 242 (500)
T ss_dssp HHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-----HTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEE
Confidence 57888899888 899999999999999998884 36777777663 3899999998331 789999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---c--------CC------CCcEEEeCCcccc-cc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A--------RL------GADVVVHSISKFI-SG 127 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---~--------~~------~~d~~~~S~sK~~-~~ 127 (324)
+++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+.. . .+ ...++++|+||.| |.
T Consensus 243 l~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 322 (500)
T 3tcm_A 243 VINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGE 322 (500)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCC
T ss_pred EECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCC
Confidence 9999999999976 6677778999999999999996654321 0 11 1248889999999 78
Q ss_pred CCCeeEEEEEc---ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHHHHH
Q 020548 128 GADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-----------PHLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 128 ~g~r~~G~i~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~ 193 (324)
+|.|+ ||++. ++++++.+...... ..+.+.+.+..+..++... .+.....+++.++++.+.+.
T Consensus 323 ~G~R~-G~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 399 (500)
T 3tcm_A 323 CGKRG-GYFEITGFSAPVREQIYKIASV--NLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHA 399 (500)
T ss_dssp GGGCC-EEEEEESCCTTHHHHHHHHHHT--TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccce-EEEEEeCCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99987 88899888776541 1233334444444444421 22344556678899999999
Q ss_pred HHhC-CCceeCCC
Q 020548 194 MKKL-GLKVLYPG 205 (324)
Q Consensus 194 L~~~-~~~~~~p~ 205 (324)
|++. +..+..|.
T Consensus 400 L~~~~g~~~~~~~ 412 (500)
T 3tcm_A 400 FNKLEGITCNEAE 412 (500)
T ss_dssp HHTSTTEECCCCC
T ss_pred HhcCCCcEEecCC
Confidence 9988 44554343
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=205.97 Aligned_cols=263 Identities=15% Similarity=0.170 Sum_probs=182.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..+++++ +++||+|+++.|+|+++...+...... .|.++..++.+ |++++++++ ++++++|++++|+
T Consensus 87 ~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~ 164 (390)
T 1elu_A 87 TGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHL-GPKTRLVILSHLL 164 (390)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGGSSSSCHHHHHHTTC-CTTEEEEEEESBC
T ss_pred HHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH-hCcEEEEEcCCCCCCccchHHHHHHhc-CCCceEEEEeccc
Confidence 4788888988 899999999999999987654332223 57888888762 789999999 7789999999999
Q ss_pred CCcccccChHHHHHHHH----hcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAH----DKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~----~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||||.+.|+++|.++|+ ++|+++|+|++|+... .+....++|++++|+||++.+ +.++ |+++.++++++.+.
T Consensus 165 nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~-~~g~-G~~~~~~~~~~~~~ 242 (390)
T 1elu_A 165 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAG-PAGV-GGLYIHGDCLGEIN 242 (390)
T ss_dssp TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCC-CTTC-EEEEECTTTGGGCC
T ss_pred cCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccC-CCce-EEEEECHHhHhhcC
Confidence 99999999999999999 9999999999994221 122234789999999995544 3445 99999988877665
Q ss_pred Hhhhhh------------------hhccCCCCCHHH---HHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 148 DLHQGA------------------LMLLGPTMNPKV---AFELSER---IPHLGLRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 148 ~~~~~~------------------~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
....+. .....+++.... +..++.. ..+++...+++.++++++.+.|++. +.++.
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 322 (390)
T 1elu_A 243 PTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL 322 (390)
T ss_dssp CCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred CccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 421100 011122223221 1122221 2236667788899999999999997 44554
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.|. + +.|+++.+.++...+...+.+.+.. .|+ .+ .++.
T Consensus 323 ~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v----------~~~~----------- 360 (390)
T 1elu_A 323 ATS-A----------------PQAGLVSFTVDSPLGHRAIVQKLEE---QRI-YL----------RTIA----------- 360 (390)
T ss_dssp CSS-C----------------CSSSEEEEEECSSSCHHHHHHHHHH---TTE-EC----------EEET-----------
T ss_pred cCc-c----------------ccccEEEEEcCCCCCHHHHHHHHHH---CCE-EE----------EecC-----------
Confidence 332 0 2567888898632335567676653 333 11 1110
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++++|+|++ ...++++++.+.++|+++
T Consensus 361 -----~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 -----DPDCIRACCH-YITDEEEINHLLARLADF 388 (390)
T ss_dssp -----TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred -----CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence 1478999998 777787778777777654
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=202.62 Aligned_cols=223 Identities=13% Similarity=0.145 Sum_probs=158.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|++++|+|++ +...++ . .|.++..++.+ |++++++++.++++++|++++|+|
T Consensus 73 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 147 (416)
T 3isl_A 73 AGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAE----R-YGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGET 147 (416)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH----h-cCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCC
Confidence 57888888899999999999999997 444442 2 68888888775 899999999436899999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh--
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-- 150 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~-- 150 (324)
|||.+.|+++|.++|+++|+++|+|++|+. ...+....++|++++|+||+++++ ..+ |+++.++++++.+....
T Consensus 148 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~-~g~-g~~~~~~~~~~~~~~~~~~ 225 (416)
T 3isl_A 148 STGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVP-SGM-APITYNERVADVIAARKKV 225 (416)
T ss_dssp TTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCC-SSE-EEEEECHHHHHHHHTC---
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCC-CCe-EEEEECHHHHHHhhccccc
Confidence 999999999999999999999999999832 223344457999999999985443 234 99999999988876421
Q ss_pred ------------------------------h--hhhhccCCCCCHHHHHH---HhcCcc-c-HHHHHHHHHHHHHHHHHH
Q 020548 151 ------------------------------Q--GALMLLGPTMNPKVAFE---LSERIP-H-LGLRMKEHCHRALIFARR 193 (324)
Q Consensus 151 ------------------------------~--~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~ 193 (324)
. .......+++....... .+.... . ++...+++.++++++.+.
T Consensus 226 ~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~ 305 (416)
T 3isl_A 226 ERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAG 305 (416)
T ss_dssp ---------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0 00001122323222221 121111 1 556677789999999999
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
|++.+.++..|.- ...+.++++.++...+...+.+.+.
T Consensus 306 L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~L~ 343 (416)
T 3isl_A 306 IKAMGLRLFGDDS----------------CKMPVVTCVEIPGGIDGESVRDMLL 343 (416)
T ss_dssp HHHTTCCBCSCGG----------------GBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred HHHcCCEeccCcc----------------ccCCcEEEEeCCCCCCHHHHHHHHH
Confidence 9997665543320 0136688999863334566777665
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=203.01 Aligned_cols=265 Identities=15% Similarity=0.179 Sum_probs=180.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchh--HHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~--~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|++ +...++ . .|.++..++.+ |++++++++.+.++++|++++|+|
T Consensus 75 ~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 149 (411)
T 3nnk_A 75 AGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR----R-CRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDT 149 (411)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH----H-cCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence 47888899899999999999999987 555552 2 68888888765 899999999334899999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh-
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ- 151 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~- 151 (324)
|||.+.|+++|+++|+++|+++|+|++++. ...+....++|+++.|+||+++++ .++ |+++.++++++.+.....
T Consensus 150 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~-~g~-g~~~~~~~~~~~~~~~~~~ 227 (411)
T 3nnk_A 150 STTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGP-SGT-SPITLSARMEEAIRRRKCV 227 (411)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCC-SSE-EEEEECHHHHHHHHTTCCC
T ss_pred CcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCC-Cce-EEEEECHHHHHHHhhcccc
Confidence 999999999999999999999999999832 223334457999999999985553 244 999999999888875430
Q ss_pred --h-----------------------------hhhccCCCCCHHHHHHH---hcCc-c-cHHHHHHHHHHHHHHHHHHHH
Q 020548 152 --G-----------------------------ALMLLGPTMNPKVAFEL---SERI-P-HLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 152 --~-----------------------------~~~~~~~~~~~~~~~~~---~~~~-~-~~~~~~~~~~~~~~~l~~~L~ 195 (324)
+ .......++.......+ +... . .++...+++.++++++.+.|+
T Consensus 228 ~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (411)
T 3nnk_A 228 EEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQ 307 (411)
T ss_dssp CGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 00011122232222221 1111 1 145667778899999999999
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
+.+.++..|.- ...+.++++.++...+...+.+.+.. +.|+ .+..| ..
T Consensus 308 ~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~--~~gi-~v~~g----------~~--- 355 (411)
T 3nnk_A 308 AMGLETFGDLK----------------HKMNNVLGVVIPQGINGDQARKLMLE--DFGI-EIGTS----------FG--- 355 (411)
T ss_dssp HTTCCBCSCGG----------------GBCSSEEEEECCTTCCHHHHHHHHHH--HHSE-EEEEC----------CG---
T ss_pred HcCCEeCCCcc----------------cccccEEEEECCCCCCHHHHHHHHHH--hcCe-EEeCc----------cC---
Confidence 98765543320 02467889998633335566666543 1233 21111 10
Q ss_pred CCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhh
Q 020548 276 ELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~ 316 (324)
...++++|+|+ + ..+++++++.+.++|+++
T Consensus 356 ----------~~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~ 386 (411)
T 3nnk_A 356 ----------PLHGKVWRIGTMG-YNARKDCVMTTLSALEAV 386 (411)
T ss_dssp ----------GGTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEEeCcc-CcCCHHHHHHHHHHHHHH
Confidence 11357999998 7 665566666666655554
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=208.14 Aligned_cols=196 Identities=17% Similarity=0.157 Sum_probs=144.6
Q ss_pred chHHHHHHHccCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcC----CceE
Q 020548 2 SAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQG----RTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~----~~~~ 66 (324)
+|+..++++++++|| +|+++.|+|+.+...++ ..|.++..++.+ |+++|++++.+. ++++
T Consensus 164 ~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~ 238 (498)
T 3ihj_A 164 DGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS-----ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKV 238 (498)
T ss_dssp HHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHH-----HTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeE
Confidence 578889999999875 99999999999998884 367777777654 899999998332 6899
Q ss_pred EEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----C-------C-------CCcEEEeCCcccc
Q 020548 67 LYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA----R-------L-------GADVVVHSISKFI 125 (324)
Q Consensus 67 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----~-------~-------~~d~~~~S~sK~~ 125 (324)
|++++|+||||.+.+ +++|+++|+++|+++|+||+|+.+.+... . + ...++++|+||.|
T Consensus 239 i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 318 (498)
T 3ihj_A 239 LCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGY 318 (498)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSST
T ss_pred EEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccc
Confidence 999999999999975 66799999999999999999966544311 0 0 1247899999999
Q ss_pred -ccCCCeeEEEEE---cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHH
Q 020548 126 -SGGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-----------PHLGLRMKEHCHRALIF 190 (324)
Q Consensus 126 -~~~g~r~~G~i~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l 190 (324)
|.+|.|+ ||++ .++++++.+...... ..+.+.+.+.++..++... .......+++.++++.+
T Consensus 319 ~G~~G~R~-G~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l 395 (498)
T 3ihj_A 319 MGECGYRG-GYMEVINLHPEIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLT 395 (498)
T ss_dssp TCCSSSCC-EEEEEESCCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccce-EEEEEecCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689996 9997 688999988776541 1233334444444344320 11234456678999999
Q ss_pred HHHHHhC-CCceeCCC
Q 020548 191 ARRMKKL-GLKVLYPG 205 (324)
Q Consensus 191 ~~~L~~~-~~~~~~p~ 205 (324)
.+.|++. +..+..|.
T Consensus 396 ~~~L~~~~g~~~~~p~ 411 (498)
T 3ihj_A 396 EDLFNQVPGIHCNPLQ 411 (498)
T ss_dssp HHHHHTSTTEECCCCC
T ss_pred HHHHhcCCCcEecCCC
Confidence 9999987 44554343
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=203.30 Aligned_cols=297 Identities=19% Similarity=0.201 Sum_probs=206.7
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchhHHHHHh------hhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~~~~~~~------~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++.++++|||+|+++. |.|..+...+. ..+.. .|.++++++.+ |++++++++ ++++++|++
T Consensus 94 ~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~-~G~~~~~v~~~~~~~~d~e~l~~~l-~~~tk~V~i 171 (431)
T 3ht4_A 94 HAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKE-YNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGI 171 (431)
T ss_dssp HHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGG-GTCEEEECCBCTTSSBCHHHHHHHC-CTTEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHH-cCCEEEEeCCCCCCCcCHHHHHhhc-CCCCeEEEE
Confidence 578888888999999999999 99999887663 22333 68999999874 999999999 789999999
Q ss_pred ec-CCCCcccc---cChHHHHHHHHh--cCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 70 ES-ISNPTLAV---ANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 70 ~~-~~nptG~~---~~~~~i~~l~~~--~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
++ |+||+|.. .++++|+++|++ +|+++++|++|+.+. ..+...++|++++|+||++++.+...|||++++++
T Consensus 172 ~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~ 251 (431)
T 3ht4_A 172 QRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQ 251 (431)
T ss_dssp ECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred ECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHH
Confidence 95 77776665 578899999999 999999999996554 46777799999999999988733333699999999
Q ss_pred HHHHHHHhhhh--hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQG--ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
+++.+...... .+...++++. .++.+++.+..++.++++..++++++.+.|++++.++ .|. ++.+
T Consensus 252 li~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~-~~~~--------- 318 (431)
T 3ht4_A 252 YVEACAYRLTSPGIGAEAGASLY--SLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKLGMNT-SPA-WNAP--------- 318 (431)
T ss_dssp HHHHHHHHHSCTTTTTSCSCCCS--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCE-ESC-TTSC---------
T ss_pred HHHHHHHHhccCCcccccCccHH--HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHhCcCEe-cCC-CCCC---------
Confidence 99998875431 1112222222 1222344555667788889999999999999999876 455 2222
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccc----cccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA----VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
+.+-++.+.+++.+...+|++.++...+.+.+. -.++|+++.+++.+..+-+..+.+......+.+.++=.-
T Consensus 319 ----~~~li~~i~l~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~gy~~~~~~~~~~f~~~~~~e~~~~~~~~~~~~~~~ 394 (431)
T 3ht4_A 319 ----RTDLIQSVQFDDKDRMIAFCQAIQYASPINSHFTPYANYMPGYEDDVIMAAGTFIQGASIELSADGPIRPPYVAYV 394 (431)
T ss_dssp ----CSSSCCEEECCCHHHHHHHHHHHHHTSSSSTTSCCCCEECTTSSSEEEEECCCSSSSCTTSCEEEEESCTTTEEEE
T ss_pred ----CccEEEEEEeCCHHHHHHHHHHHHhcCccccccCCCCCCCCCCCCceeEecccCCCCcceeccCCCCCCCCeEEEE
Confidence 245588999998888999999999755444321 144677776666555443322221111112223333333
Q ss_pred eccCCCHHHHHHHHHHHHHhhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
=| --+-+...-.+..+++++.+
T Consensus 395 ~~-~~~~~~~~~~~~~~~~~~~~ 416 (431)
T 3ht4_A 395 QG-GLTYSHVKIAICSAIDELIE 416 (431)
T ss_dssp EC-CSSHHHHHHHHHHHHHHTCC
T ss_pred eC-CccHHHHHHHHHHHHHHHHH
Confidence 34 34455555556666666643
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=202.94 Aligned_cols=272 Identities=17% Similarity=0.203 Sum_probs=183.0
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++ +++||+|+++.|+|++....+...... .|.++..++.+ |++++++++ ++++++|+++++
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~ 173 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHV 173 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHHHh-ccCCeEEEEeCC
Confidence 5788888888 899999999999998765443322223 67888887753 789999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++|+|++|+.... +....++|++++|+||.+|++| + ||++.++++++.+.+..
T Consensus 174 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G--~-G~~~~~~~~~~~~~~~~ 250 (406)
T 1kmj_A 174 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWE 250 (406)
T ss_dssp CTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHCCCSS
T ss_pred CccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCC--c-EEEEEeHHHHhhcCCcc
Confidence 99999999999999999999999999999943322 2223478999999999997766 4 99999998888776443
Q ss_pred hhhh------------------hccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCC
Q 020548 151 QGAL------------------MLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGL 206 (324)
Q Consensus 151 ~~~~------------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~ 206 (324)
.+.. .+..+++.....+. .+..+. .++...+++.++++++.+.|++. +.++..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 329 (406)
T 1kmj_A 251 GGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ- 329 (406)
T ss_dssp CSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT-
T ss_pred cCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-
Confidence 2100 01112222222211 222221 34456667788999999999987 44554331
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
..|+++.+.+++ .+...+.+.+.. .|+ .+..|..+. +......+
T Consensus 330 -----------------~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~~~--------------~~~~~~~g 373 (406)
T 1kmj_A 330 -----------------NRLGVIAFNLGK-HHAYDVGSFLDN---YGI-AVRTGHHCA--------------MPLMAYYN 373 (406)
T ss_dssp -----------------TCCSEEEEEETT-CCHHHHHHHHHH---TTE-ECEEECTTC--------------HHHHHHTT
T ss_pred -----------------CcCCEEEEEECC-CCHHHHHHHHhh---CCc-EEEeccccc--------------hHHHHhcC
Confidence 136688888863 124455555553 333 222221110 00011122
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
. ++++|+|++ ..+++++++.+.++|+++.
T Consensus 374 ~-~~~iRis~~-~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 374 V-PAMCRASLA-MYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp C-SCEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred C-CCeEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence 2 479999999 8877777888887777654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=205.02 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=183.8
Q ss_pred chHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++ +++||+|+++.|+|++....+...... .|.++..++. .|++++++++ ++++++|+++++
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~ 178 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHI 178 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHh-cCcEEEEeccCCCCCcCHHHHHHhh-CCCceEEEEeCC
Confidence 5788888888 899999999999999953322222112 6788888876 3899999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+++|+|++|+.... +....++|++++|+||.++++| + |+++.++++++.+....
T Consensus 179 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g--~-G~~~~~~~~~~~~~~~~ 255 (420)
T 1t3i_A 179 SNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFF 255 (420)
T ss_dssp CTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCS
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCc--e-EEEEEchHHHhhcCcee
Confidence 99999999999999999999999999999843322 2233478999999999887766 4 99999998888776543
Q ss_pred hhhh-----------------hccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCC
Q 020548 151 QGAL-----------------MLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLE 207 (324)
Q Consensus 151 ~~~~-----------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~ 207 (324)
.+.. .+..++........ .+..+. .++...+++.++++++.+.|++. +.++..|...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 335 (420)
T 1t3i_A 256 GGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPK 335 (420)
T ss_dssp CSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGG
T ss_pred cCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCcc
Confidence 2110 01112222222111 122221 24566677889999999999987 4455544300
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
. .+.|+++++.+++ .+...+.+.+.. .|+ .+..|.... . ......+.
T Consensus 336 ~--------------~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~~~~~~------~--------~~~~~~g~ 382 (420)
T 1t3i_A 336 H--------------GDRAALASFNVAG-LHASDVATMVDQ---DGI-AIRSGHHCT------Q--------PLHRLFDA 382 (420)
T ss_dssp G--------------SCBCSEEEEEETT-BCHHHHHHHHHT---TTE-ECBCSCTTC------H--------HHHHHTTC
T ss_pred c--------------cccCCEEEEEECC-CCHHHHHHHHHH---CCe-EEeeccccc------h--------HHHHhcCC
Confidence 0 0146788888874 234456666653 343 222221110 0 00011222
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++++|+|++ ..+++++++.+.++|+++.
T Consensus 383 -~~~iRis~~-~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 383 -SGSARASLY-FYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp -CCCEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred -CCeEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 578999999 8777777777777776654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=197.56 Aligned_cols=249 Identities=12% Similarity=0.092 Sum_probs=176.1
Q ss_pred CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcccccChHHHHHHH
Q 020548 13 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 13 ~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
.+||+|+++.|+|+++...++ ..|.++..++.+|++++++.++. +++++|++++|+||||.+.|+++|.++|
T Consensus 130 ~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 204 (401)
T 2bwn_A 130 FPGLIIYSDSLNHASMIEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIA 204 (401)
T ss_dssp STTCEEEEETTCCHHHHHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred CCCCEEEECchhhHHHHHHHH-----HcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHH
Confidence 589999999999999988773 36888889988899999998832 5799999999999999999999999999
Q ss_pred HhcCCEEEEcCCCC-cCC-CCc------cCC--CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 90 HDKGVTVVVDNTFS-PLV-LSP------ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 90 ~~~~~~~ivD~~~~-~~~-~~~------~~~--~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
+++|+++|+|++|+ +.. ... ... ..|++++|+||+++++| ||+++++++.+.+...........+.
T Consensus 205 ~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (401)
T 2bwn_A 205 EEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSL 280 (401)
T ss_dssp HHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCC
T ss_pred HHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC----CEEecCHHHHHHHHHhCcCceecCCC
Confidence 99999999999995 222 110 111 35899999999998764 99999998888876543311111222
Q ss_pred CC-CHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 160 TM-NPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
.+ .+..+...+..+... +...+++.++++++.+.|++.+.++..| .++++++.++..
T Consensus 281 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~~~~~~~ 340 (401)
T 2bwn_A 281 PPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--------------------GSHIVPVVIGDP 340 (401)
T ss_dssp CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--------------------SSSCEEEECCCH
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--------------------CCCeEEEEeCCh
Confidence 22 111112223223332 5667778899999999999876554422 245899999765
Q ss_pred HHHHHHHHHhh-ccccccccccccCCccceeccccccccCCCCHHHHHhcCC--CCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 237 EKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 237 ~~~~~~~~~l~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
.....+.+.+. . .|+ .+. |... .+. ..+++|+|++ ..+++++++.+.++|
T Consensus 341 ~~~~~~~~~L~~~---~gi-~v~----------~~~~------------~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 341 VHTKAVSDMLLSD---YGV-YVQ----------PINF------------PTVPRGTERLRFTPS-PVHDLKQIDGLVHAM 393 (401)
T ss_dssp HHHHHHHHHHHHH---HCE-ECC----------EECT------------TTSCTTCCEEEECCC-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCE-EEe----------ecCC------------CCCCCCCceEEEEee-CCCCHHHHHHHHHHH
Confidence 55667777763 3 333 111 1110 011 1368999999 888888888888888
Q ss_pred Hhhh
Q 020548 314 SRMQ 317 (324)
Q Consensus 314 ~~~~ 317 (324)
+.+-
T Consensus 394 ~~~~ 397 (401)
T 2bwn_A 394 DLLW 397 (401)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7664
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=205.36 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=182.0
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+++..++.++ +++||+|+++.|+|+++...+.....+ .|.++.+++.+ |++++++++ ++++++|++++|
T Consensus 97 ~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~ 174 (406)
T 3cai_A 97 VLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHR-YGAKVKWAEVDIETGELPTWQWESLI-SKSTRLVAVNSA 174 (406)
T ss_dssp HHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHH-HBCEEEEECCCTTTCCCCGGGHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHh-cCCeEEEEecCcccCCcCHHHHHHHh-CCCceEEEEeCC
Confidence 4677777777 789999999999999877666433222 58888888765 899999999 788999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCC-CCccCCCCcEEEeCCccccccCCCeeEE-EEEcChhHHHHHHHh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDL 149 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G-~i~~~~~~~~~l~~~ 149 (324)
+||||.+.|+++|.++|+++|+++|+|++|+ +.. .+....++|++++|+||++| ++ + | +++.++++.+.+.+.
T Consensus 175 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~--~-G~~~~~~~~~~~~l~~~ 250 (406)
T 3cai_A 175 SGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PP--I-GAMVFRDPSVMNSFGSV 250 (406)
T ss_dssp CTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS--C-EEEEESCHHHHHTSCCC
T ss_pred cCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcC-CC--c-CeEEEEehHHHhhcCCc
Confidence 9999999999999999999999999999994 222 22233479999999999885 34 4 7 999998887766543
Q ss_pred hhhh-----hhccCCCCCHHHH--H-HHhcCcc----------------cHHHHHHHHHHHHHHHHHHHHhCC-CceeCC
Q 020548 150 HQGA-----LMLLGPTMNPKVA--F-ELSERIP----------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYP 204 (324)
Q Consensus 150 ~~~~-----~~~~~~~~~~~~~--~-~~~~~~~----------------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p 204 (324)
.... ..+..+++..... . ..+.... .++...++..++++++.+.|++.+ .++..|
T Consensus 251 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (406)
T 3cai_A 251 STNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGR 330 (406)
T ss_dssp CSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCC
T ss_pred ccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC
Confidence 2100 0011222332221 1 1121111 245566677889999999999874 344333
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHh
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 284 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
. ...+++++|.+++ .+...+.+.+.. .|+ .+..|... .....
T Consensus 331 ~-----------------~~~~~~~~~~~~~-~~~~~~~~~L~~---~gi-~v~~g~~~----------------~~~~~ 372 (406)
T 3cai_A 331 P-----------------EAQIPVVSFAVHK-VPADRVVQRLAD---NGI-LAIANTGS----------------RVLDV 372 (406)
T ss_dssp C-----------------SSBCSEEEEEETT-BCHHHHHHHHHH---TTE-ECEECCSC----------------HHHHH
T ss_pred c-----------------cccCCEEEEEECC-cCHHHHHHHHHH---CCc-EEecCChH----------------HHHHH
Confidence 2 0135588998873 234556666653 333 22222200 00111
Q ss_pred cCCC--CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 285 AGIS--AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 285 ~~~~--~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|.+ .+++|+|++ ..+++++++.+.++|+.+
T Consensus 373 ~g~~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 373 LGVNDVGGAVTVGLA-HYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HTTTTTTCCEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred cCCCCCCCeEEEEee-cCCCHHHHHHHHHHHHHh
Confidence 2332 478999999 888888888888887654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=209.32 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=110.2
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------CHHHHHHhhhcCCceEE
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~~v 67 (324)
+|+..++.+ ++++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|
T Consensus 175 ~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l-~~~~k~v 248 (533)
T 3f6t_A 175 AAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-----LKDYELVEVDLHSYEKNDWEIEPNEIEKLK-DPSIKAL 248 (533)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-----GGGSEEEEECCCEETTTTSEECHHHHHHHS-CTTEEEE
T ss_pred HHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-----HcCCeEEEEEecCCcccCCCCCHHHHHHHh-CCCCeEE
Confidence 577888887 78999999999999999887663 356777666652 899999999 8899999
Q ss_pred EEecCCCCcccccChH---HHHHHHH-hcCCEEEEcCCCCcCCCCccC-----CCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 68 YFESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSPLVLSPAR-----LGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~---~i~~l~~-~~~~~~ivD~~~~~~~~~~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
++++|+||||.+.+.+ +|+++|+ ++|+++|+||+|+++...... .+.+++++|+||.+|++|+|+ ||+++
T Consensus 249 ~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~ 327 (533)
T 3f6t_A 249 IVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRL-GVIAL 327 (533)
T ss_dssp EEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCE-EEEEE
T ss_pred EEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccce-EEEEE
Confidence 9999999999998755 8888888 689999999999766543221 146799999999999899997 99988
Q ss_pred Chh
Q 020548 139 PAN 141 (324)
Q Consensus 139 ~~~ 141 (324)
+++
T Consensus 328 ~~~ 330 (533)
T 3f6t_A 328 NEK 330 (533)
T ss_dssp ESS
T ss_pred CcH
Confidence 765
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=200.74 Aligned_cols=253 Identities=15% Similarity=0.169 Sum_probs=176.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-CCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-SDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++++++ ||+|+++.|+|.++...++ ..|.++..++. ++.+. +..+++++|++++|+||||.+.
T Consensus 78 ~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~----~~~~~~~~v~i~~p~nptG~~~ 146 (350)
T 3fkd_A 78 AAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-----MYEHEVCFYPSNEDIGE----ADFSNMDFCWLCNPNNPDGRLL 146 (350)
T ss_dssp HHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-----HTTCEEEEEETTSCGGG----SCCTTCSEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-----HcCCeEEEEecCCcccc----CccCCCCEEEEeCCCCCcCCCC
Confidence 57888888877 9999999999999988774 37889989887 43222 2126889999999999999999
Q ss_pred ChHHHHHHHHhcC-CEEEEcCCCCcCCCCcc-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 81 NIPELSRLAHDKG-VTVVVDNTFSPLVLSPA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 81 ~~~~i~~l~~~~~-~~~ivD~~~~~~~~~~~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
+.+++.++++.++ .++|+||+|..+..... ..+.+++++|+||+++++|.|+ ||++.++++.+.+......
T Consensus 147 ~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~ 225 (350)
T 3fkd_A 147 QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRI-GYIVANKDFMKRVAAFSTP 225 (350)
T ss_dssp CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCC-EEEECCHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchhe-EeEEeCHHHHHHHHHhCCC
Confidence 9999999988875 79999999966543211 2357799999999999889997 9999999999988776541
Q ss_pred hhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
...+.+.+..+..++.....+..+.+++.++++++.+.|++++ ..+. |. .|+++++
T Consensus 226 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~-------------------~~~~~~~ 282 (350)
T 3fkd_A 226 ---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PS-------------------GTTFFLL 282 (350)
T ss_dssp ---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CC-------------------SSSEEEE
T ss_pred ---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CC-------------------CCcEEEE
Confidence 2222233333333444433233344455588999999999883 3442 33 4678889
Q ss_pred EeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHH
Q 020548 232 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 311 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~ 311 (324)
.++.. +...+.+.+.. +.|+ .++.|.. + .+..++++|+|++ ..+.++.|.+
T Consensus 283 ~~~~~-~~~~l~~~L~~--~~gi-~v~~g~~----------f-----------~~~~~~~iRis~~----~~~~~~~l~~ 333 (350)
T 3fkd_A 283 RLKKG-TAAELKKYMLE--EYNM-LIRDASN----------F-----------RGLDESYVRITTQ----RPAQNQLFIK 333 (350)
T ss_dssp EESSS-CHHHHHHHHHH--TTCE-ECEECTT----------S-----------TTCCTTEEEEECC----CHHHHHHHHH
T ss_pred ECCCC-CHHHHHHHHHH--HCCE-EEEeCcc----------C-----------CCCCCCEEEEEcC----CHHHHHHHHH
Confidence 99743 45667776653 1333 2222221 1 0223589999999 3344567777
Q ss_pred HHHhhhh
Q 020548 312 ALSRMQD 318 (324)
Q Consensus 312 ~l~~~~~ 318 (324)
+|+.+.+
T Consensus 334 al~~~~~ 340 (350)
T 3fkd_A 334 ALETFLE 340 (350)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777754
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=204.09 Aligned_cols=265 Identities=13% Similarity=0.110 Sum_probs=174.2
Q ss_pred chHH--HHHHHccC--C---------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh-cCC
Q 020548 2 SAIS--SVLMQLCS--S---------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV-QGR 63 (324)
Q Consensus 2 ~ai~--~~~~~~~~--~---------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~-~~~ 63 (324)
+|+. .+++++++ | ||+|+++.|+|+++...++ ..|.++..++.+ |+++++++++ +++
T Consensus 98 ~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~ 172 (423)
T 3ez1_A 98 LELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ-----TLGFELLTVDMQSDGPDVDAVERLAGTDPS 172 (423)
T ss_dssp HHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH-----HHTCEEEEEEEETTEECHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH-----HcCCEEEeccCCCCCCCHHHHHHHHhhCCC
Confidence 4665 77777777 8 5999999999999988874 267777776653 8999999995 468
Q ss_pred ceEEEEe-cCCCCcccccChH---HHHHHH-HhcCCEEEEcCCCCcC--CC-C------c-------cCCCCcEEEeCCc
Q 020548 64 TKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPL--VL-S------P-------ARLGADVVVHSIS 122 (324)
Q Consensus 64 ~~~v~~~-~~~nptG~~~~~~---~i~~l~-~~~~~~~ivD~~~~~~--~~-~------~-------~~~~~d~~~~S~s 122 (324)
+++|++. +|+||||.+.+.+ +|+++| +++|+++|+||+|..+ .. . . ...+.+++++|+|
T Consensus 173 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 252 (423)
T 3ez1_A 173 VKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTS 252 (423)
T ss_dssp EEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEEST
T ss_pred ceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCch
Confidence 9999865 7999999998866 888888 8999999999999632 21 1 0 1236789999999
Q ss_pred cccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cc----cHHHHHHHHHHHHHHHHHHHHh-
Q 020548 123 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IP----HLGLRMKEHCHRALIFARRMKK- 196 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~L~~- 196 (324)
|+ +++|.|+ ||+++++++++.+...... .....+.+.+.++..++.. .. .+....+.+.++++.+.+.|.+
T Consensus 253 K~-~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (423)
T 3ez1_A 253 KI-TFAGAGL-GFVASSEDNIRWLSKYLGA-QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAE 329 (423)
T ss_dssp TT-SCSSSSC-EEEEECHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-ccCCcce-EEEEeCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 5779997 9999999999998877651 1122333444444444433 12 2333344456666766666655
Q ss_pred ---CC--CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccccccc-CCccceecccc
Q 020548 197 ---LG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSG 270 (324)
Q Consensus 197 ---~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~-g~~~~~~~~~~ 270 (324)
.+ ..+..|. .|.++++.++.. ....+.+.+.. .|+ .+.. |..... .
T Consensus 330 l~~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~~---~gv-~v~~~g~~~~~----~ 381 (423)
T 3ez1_A 330 LGEGGEYATWTLPK-------------------GGYFISLDTAEP-VADRVVKLAEA---AGV-SLTPAGATYPA----G 381 (423)
T ss_dssp HTTTTSSEEECCCS-------------------BSSCEEEEESSS-CHHHHHHHHHH---TTE-ECCCTTTTSST----T
T ss_pred cCcCCCceEEeCCC-------------------ccEEEEEECCCC-cHHHHHHHHHH---CCc-EEecCcccccC----C
Confidence 44 3444444 678999999743 34455555553 343 2222 211100 0
Q ss_pred ccccCCCCHHHHHhcCCCCCeEEEEeccCCCHH---HHHHHHHHHHHhhh
Q 020548 271 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLD---QRWSQFEKALSRMQ 317 (324)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~---~~~~~l~~~l~~~~ 317 (324)
.+..++++|+|++ ..+.+ +.++.|.++++.+.
T Consensus 382 --------------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 382 --------------QDPHNRNLRLAPT-RPPVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp --------------CCSSSCEEEECCS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 0123589999999 64333 33455555555443
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=202.18 Aligned_cols=215 Identities=12% Similarity=0.092 Sum_probs=150.4
Q ss_pred HHHHHHccCC------------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhcCCceEEE
Q 020548 5 SSVLMQLCSS------------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 5 ~~~~~~~~~~------------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~~~~~v~ 68 (324)
..++++++.+ +|+|++++|+|+++...++ ..|.++..++. .|++++++++.+.++++|+
T Consensus 109 ~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~ 183 (422)
T 3d6k_A 109 DLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-----HFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMW 183 (422)
T ss_dssp HHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----HHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-----HcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEE
Confidence 4555666655 3489999999999998874 25777777665 3899999999334889988
Q ss_pred -EecCCCCcccccChH---HHHHHHH-hcCCEEEEcCCCCc--CCCC-----cc--------CCCCcEEEeCCccccccC
Q 020548 69 -FESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSP--LVLS-----PA--------RLGADVVVHSISKFISGG 128 (324)
Q Consensus 69 -~~~~~nptG~~~~~~---~i~~l~~-~~~~~~ivD~~~~~--~~~~-----~~--------~~~~d~~~~S~sK~~~~~ 128 (324)
+++||||||.+.+.+ +|+++|+ ++|+++|+||+|.. +... +. ..+.+++++|+||+ +++
T Consensus 184 ~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~ 262 (422)
T 3d6k_A 184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THA 262 (422)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCT
T ss_pred EcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCc
Confidence 588999999998765 7788888 89999999999953 5321 22 23678999999999 678
Q ss_pred CCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHh----CCC-
Q 020548 129 ADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKK----LGL- 199 (324)
Q Consensus 129 g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~----~~~- 199 (324)
|+|+ ||+++++++++.+...... ...+.+.+.+.++..++... .++....+.+.++++.+.+.|++ .+.
T Consensus 263 Glri-G~~~~~~~l~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~ 340 (422)
T 3d6k_A 263 GSGV-SFFASSKENIEWYASHANV-RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVA 340 (422)
T ss_dssp TSSC-EEEECCHHHHHHHHHHHHH-HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccce-EEEEeCHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCce
Confidence 9997 9999999999988876552 11223334444444445431 22334445567788888887765 232
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.+..|. +|.++|+.++.. ....+.+.+.
T Consensus 341 ~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~ 368 (422)
T 3d6k_A 341 KWTSPT-------------------GGYFISVDVVPG-TASRVVELAK 368 (422)
T ss_dssp EECCCS-------------------BSSCEEEEESTT-CHHHHHHHHH
T ss_pred EEeCCC-------------------cceEEEEECCCC-CHHHHHHHHH
Confidence 434443 577899999742 2344555554
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=200.88 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=134.3
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEE
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~ 69 (324)
+|+..++..+ ++|||+|++++|+|.++...++ ..|.++..++.+ |++++++.++ +++++++++
T Consensus 107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i 181 (401)
T 7aat_A 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLH 181 (401)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-----HcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEe
Confidence 4666666554 4899999999999999998884 267777776642 7887777763 257899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------------cCCCCcEEEeCCccccccCCCeeEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------------ARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------------~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|..+.... ...+.+++++|+||.|+++|+|+ |
T Consensus 182 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G 260 (401)
T 7aat_A 182 ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-G 260 (401)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-E
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCce-E
Confidence 999999998865 7788999999999999999997765432 12257799999999999999997 9
Q ss_pred EEEc---Chh----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 135 AVCG---PAN----LVNSMMDLHQGALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 135 ~i~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
|++. +++ +...+..... ......+...+..+..++.. ..++....+++.++++++.+.|++.+
T Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 261 AFTVICRDAEEAKRVESQLKILIR-PMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHH-hccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9865 555 3344444333 11122222222222222322 22244556678899999999999875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=197.42 Aligned_cols=225 Identities=14% Similarity=0.165 Sum_probs=157.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH--HHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~--~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|+++.+.|.+. ...+. . .|.++..++.+ |++++++++.++++++|++++|+|
T Consensus 85 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 159 (393)
T 3kgw_A 85 CAMETALFNLLEPGDSFLTGTNGIWGMRAAEIAD----R-IGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGES 159 (393)
T ss_dssp THHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHH----H-cCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCC
Confidence 688899999999999999999988643 33331 2 67888777643 899999999333899999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-c-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
|||.+.|+++|.++|+++|+++|+|++|+ + ...+....++|+++.|+||+++++. .+ |+++.++++++.+.....+
T Consensus 160 ptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~-g~-g~~~~~~~~~~~~~~~~~~ 237 (393)
T 3kgw_A 160 STGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPP-GI-SLISFNDKAKYKVYSRKTK 237 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCS-SC-EEEEECHHHHHHHHTCSSC
T ss_pred cchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCC-ce-eEEEECHHHHHHHhccCCC
Confidence 99999999999999999999999999984 2 2233344578999999999875432 34 9999999998888653221
Q ss_pred h-------------------hhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 153 A-------------------LMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 153 ~-------------------~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
. ......++.......+ +... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 314 (393)
T 3kgw_A 238 PVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKD--- 314 (393)
T ss_dssp CSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSS---
T ss_pred CCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCC---
Confidence 0 0011122333222222 1111 12566777789999999999999876554332
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.....+.++++.++...+..++.+.+..
T Consensus 315 ------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 342 (393)
T 3kgw_A 315 ------------PEIRLPTITTVTVPAGYNWRDIVSYVLD 342 (393)
T ss_dssp ------------GGGBCSSEEEEECCTTBCHHHHHHHHHH
T ss_pred ------------hhhcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 0112456778888643345566666653
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=201.08 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=152.2
Q ss_pred chHHHHHHHccCCCC-----EEEEc-CCCchhHHHHHhhhcC-cccceeEEEecC------CCHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSGG-----HVVAA-RTLYGGTHALLTHFFP-RACNITTTFVDI------SDHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd-----~vl~~-~p~y~~~~~~~~~~~~-~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~ 68 (324)
+|+..++++++++|| +|+++ .|+|+++...+..... ...+..+..++. .|+++++ + ++++++|+
T Consensus 109 ~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~v~ 185 (417)
T 3g7q_A 109 SAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--I-GEETGMIC 185 (417)
T ss_dssp HHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--C-CTTEEEEE
T ss_pred HHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--c-ccCceEEE
Confidence 588899999999988 89997 9999998765421110 002334444433 2777776 5 77899999
Q ss_pred EecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 69 FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 69 ~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+++|+||||.+++ +++|+++|+++|+++|+||+|+.+.. .+...+.++++.|+|| ++++|.|+ ||+++
T Consensus 186 ~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~-G~~~~ 263 (417)
T 3g7q_A 186 VSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRC-GIIIA 263 (417)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCC-EEEEC
T ss_pred ECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcce-EEEEe
Confidence 9999999999988 88999999999999999999954221 1222368899999999 58899997 99999
Q ss_pred ChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH---H-HHHHHHHHHHHHHHHHHhC----CCceeCCCCCCCc
Q 020548 139 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG---L-RMKEHCHRALIFARRMKKL----GLKVLYPGLEDHP 210 (324)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~~ 210 (324)
++++++.+...... ....++.+.+.++..++....... . ..+.+.++++.+.+.|++. +..+..|.
T Consensus 264 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----- 337 (417)
T 3g7q_A 264 NDKTITAIANMNGI-ISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE----- 337 (417)
T ss_dssp CHHHHHHHHHHHHH-HCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC-----
T ss_pred CHHHHHHHHHhhcc-eeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC-----
Confidence 99999998876652 122334444444444444433222 2 3345677888888888773 23444444
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
.|.++|+.++. ..+...+.+.+..
T Consensus 338 --------------~g~~~~~~~~~~~~~~~~l~~~l~~ 362 (417)
T 3g7q_A 338 --------------GAIFLWLWFKDLPITTELLYQRLKA 362 (417)
T ss_dssp --------------BSSEEEEECTTCSSCHHHHHHHHHH
T ss_pred --------------cceEEEEEcCCCCCCHHHHHHHHHH
Confidence 67889999874 3345667776653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=201.24 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=135.1
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhc--CCceEEEEecCCCCcc
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ--GRTKVLYFESISNPTL 77 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~--~~~~~v~~~~~~nptG 77 (324)
++++++++||+|++++|+|.++...++ ..|.++..++.. |++++++++++ ++++++++++|+||||
T Consensus 123 ~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG 197 (409)
T 4eu1_A 123 LLNRFVANCNRIYGPDVGYPNHESIFA-----KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTG 197 (409)
T ss_dssp HGGGTSSSCCEEEEESSCCTHHHHHHH-----HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTC
T ss_pred HHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCC
Confidence 345567899999999999999998884 368888887651 89999999842 3566777799999999
Q ss_pred cccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------C-CCCcEEEeCCccccccCCCeeEEEE---EcC
Q 020548 78 AVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------R-LGADVVVHSISKFISGGADIIAGAV---CGP 139 (324)
Q Consensus 78 ~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~-~~~d~~~~S~sK~~~~~g~r~~G~i---~~~ 139 (324)
.+.+ +++|+++|+++|+++|+||+|+++..... + .+..++++|+||.+|++|+|+ ||+ +++
T Consensus 198 ~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~ 276 (409)
T 4eu1_A 198 VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTAS 276 (409)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCC
Confidence 9987 55699999999999999999976654320 1 245689999999999999997 995 567
Q ss_pred hh----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 140 AN----LVNSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 140 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
++ +.+.+..... ......+.+.+..+..++... ..+....+++.++++.+.+.|++.+
T Consensus 277 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 345 (409)
T 4eu1_A 277 AEEAKRLVSQLALLIR-PMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG 345 (409)
T ss_dssp HHHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77 5555554433 111222333343444344432 2244566778999999999999986
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=197.40 Aligned_cols=253 Identities=15% Similarity=0.135 Sum_probs=176.0
Q ss_pred chHHHHHHHccCC-------------CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-
Q 020548 2 SAISSVLMQLCSS-------------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG- 62 (324)
Q Consensus 2 ~ai~~~~~~~~~~-------------gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~- 62 (324)
+|+..++.+++.+ ||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++
T Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~ 170 (397)
T 3f9t_A 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE-----MMDLEYIYAPIKEDYTIDEKFVKDAV-EDY 170 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH-----HHTCEEEEECBCTTSSBCHHHHHHHH-HHS
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH-----HcCceeEEEeeCCCCcCCHHHHHHHH-hhc
Confidence 4677777777665 9999999999999988874 368888888875 899999999 55
Q ss_pred CceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC--C-----------ccCC--CCcEEEeCCcccccc
Q 020548 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--S-----------PARL--GADVVVHSISKFISG 127 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~-----------~~~~--~~d~~~~S~sK~~~~ 127 (324)
++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+++.. . +... ++|+++.|+||++++
T Consensus 171 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 250 (397)
T 3f9t_A 171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHC 250 (397)
T ss_dssp CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCC
T ss_pred CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCC
Confidence 899999999999999999999999999999999999999954321 0 2222 789999999998865
Q ss_pred CCCeeEEEEE-cChhHHHHHHHhhhhhhhc------cCCCC--CHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 128 GADIIAGAVC-GPANLVNSMMDLHQGALML------LGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 128 ~g~r~~G~i~-~~~~~~~~l~~~~~~~~~~------~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+.++ |+++ .++.+.+.+..... +... .+... .....+.++. ....+....++..++++++.+.|++
T Consensus 251 -~~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 327 (397)
T 3f9t_A 251 -PIPS-GGILFKDIGYKRYLDVDAP-YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE 327 (397)
T ss_dssp -CSSC-EEEEESSGGGGGGTCEECT-TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCc-eEEEEeCHHHHHhhccCCc-cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5575 6665 45555554422111 0000 01111 1122222222 2233556777788999999999999
Q ss_pred CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCC
Q 020548 197 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 276 (324)
Q Consensus 197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 276 (324)
.+..+..|. .++++++.+++ ...+.+.+.. .|+ .+..+
T Consensus 328 ~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~l~~---~gi-~v~~~---------------- 365 (397)
T 3f9t_A 328 NNFKPVIEP-------------------ILNIVAIEDED---YKEVCKKLRD---RGI-YVSVC---------------- 365 (397)
T ss_dssp TTCCBSSCC-------------------SSSEEEEECTT---HHHHHHHHHH---TTC-BCEEC----------------
T ss_pred CCCEEEcCC-------------------CccEEEEEeCC---HHHHHHHHHh---CCe-EEecc----------------
Confidence 876544343 46688888875 3455566553 232 11111
Q ss_pred CCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 277 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 277 ~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..++++|++++ ...++++++.+.++|+++
T Consensus 366 ----------~~~~~~Ri~~~-~~~~~e~i~~~~~~l~~~ 394 (397)
T 3f9t_A 366 ----------NCVKALRIVVM-PHIKREHIDNFIEILNSI 394 (397)
T ss_dssp ----------SSSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCEEEEEEc-CCCCHHHHHHHHHHHHHh
Confidence 11478999999 887888888888777665
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=204.36 Aligned_cols=141 Identities=11% Similarity=0.224 Sum_probs=112.9
Q ss_pred chHHHHHHH-----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~-----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++++ +++|||+|++++|+|+.+..... + .. .|.++.+++. .|++++++++ ++++++|++
T Consensus 176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~-~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~v~l 251 (546)
T 2zy4_A 176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE-L-AQ-YALEEVAINADPSLNWQYPDSELDKLK-DPAIKIFFC 251 (546)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH-S-TT-SCCEEEEEECBGGGTTBCCHHHHGGGG-STTEEEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH-H-cC-CCcEEEEEecCcccCCCCCHHHHHHhh-CCCCeEEEE
Confidence 567777776 57899999999999999987652 1 12 4677777764 3789998887 788999999
Q ss_pred ecCCCCcccccC---hHHHHHHH--HhcCCEEEEcCCCCcCCCCc---cC--CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 70 ESISNPTLAVAN---IPELSRLA--HDKGVTVVVDNTFSPLVLSP---AR--LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~--~~~~~~~ivD~~~~~~~~~~---~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
++|+||||.+.+ +++|+++| +++|+++|+||+|+.+...+ .. .+.++++.|+||.+|++|+|+ ||++++
T Consensus 252 ~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~ 330 (546)
T 2zy4_A 252 VNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRL-GVVAAH 330 (546)
T ss_dssp ESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCE-EEEEEE
T ss_pred ECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcce-EEEEEC
Confidence 999999999986 56778888 78999999999997664322 11 157899999999999999997 999887
Q ss_pred hh-HHHHHH
Q 020548 140 AN-LVNSMM 147 (324)
Q Consensus 140 ~~-~~~~l~ 147 (324)
++ +++.+.
T Consensus 331 ~~~l~~~l~ 339 (546)
T 2zy4_A 331 QQNVFDLAL 339 (546)
T ss_dssp SSCHHHHHH
T ss_pred CHHHHHHHH
Confidence 75 777763
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=194.77 Aligned_cols=269 Identities=13% Similarity=0.051 Sum_probs=175.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhc-CCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~-~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+|++++|+|+++. .. ..... .|.++..++.+ |++++++++++ +++++|++++++||
T Consensus 70 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 70 LGLEAAAASLISPDDVVLNLASGVYGKG-FG-YWAKR-YSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHH-HCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred HHHHHHHHHhcCCCCEEEEecCCcccHH-HH-HHHHH-cCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 4788888888999999999999998873 11 11112 57777777653 89999999853 57999999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh--
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-- 151 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~-- 151 (324)
||.+.|+++|.++|+++|+++|+|++|+. ...+....++|++++|+||+++++ ..+ |+++.++++++.+.....
T Consensus 147 tG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~-~g~-G~l~~~~~~~~~l~~~~~g~ 224 (392)
T 2z9v_A 147 SGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAP-PGL-TMMGVSERAWAKMKANPLAP 224 (392)
T ss_dssp GTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCC-SCC-EEEEECHHHHHHHHTCTTSC
T ss_pred CceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCC-Cce-eEEEECHHHHHHhhhccCCC
Confidence 99999999999999999999999999842 112223347899999999976542 223 999999998888764210
Q ss_pred ------------h--hhhccCCCCCHHHHH---HHhcCcc-c-HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchh
Q 020548 152 ------------G--ALMLLGPTMNPKVAF---ELSERIP-H-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 212 (324)
Q Consensus 152 ------------~--~~~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~ 212 (324)
+ ......+++...... .++.... . ++...+++.++++++.+.|++.+.++..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------- 297 (392)
T 2z9v_A 225 RASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAAS------- 297 (392)
T ss_dssp CSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSS-------
T ss_pred CceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCC-------
Confidence 0 000112233332211 1222111 1 455667788899999999998765554322
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
+....++++++.++...+...+.+.+.. ++|+ .+..|.. + ..++.+
T Consensus 298 --------~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~gi-~v~~g~~------~-----------------~~~~~l 343 (392)
T 2z9v_A 298 --------DSIASPTTTAVRTPDGVDEKALRQAARA--RYGV-VFSSGRG------E-----------------TLGKLT 343 (392)
T ss_dssp --------GGGBCTTEEEEECCTTCCHHHHHHHHHH--HHCE-ECEECCG------G-----------------GTTTEE
T ss_pred --------ccccCCceEEEECCCCCCHHHHHHHHHh--cCCE-EEecCCC------C-----------------CCCCeE
Confidence 0001466889998632335566666653 1233 2222210 0 124789
Q ss_pred EEEe-ccCCCHHHHHHHHHHHHHhhh
Q 020548 293 RMSV-GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 293 R~s~-g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|+|+ + ...+++.++.+.++|+.+-
T Consensus 344 Ri~~~~-~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 344 RIGHMG-PTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp EEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred EEeCcc-cccCHHHHHHHHHHHHHHH
Confidence 9995 5 3555666666666665543
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=197.67 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=153.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH--HHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH--ALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~--~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|++++|+|+++. ..++ . .|.++..++. .|++++++++ ++ ++++|++++|+
T Consensus 80 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~ 153 (396)
T 2ch1_A 80 AGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE----R-YGADVRTIEGPPDRPFSLETLARAI-ELHQPKCLFLTHGD 153 (396)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEECCTTSCCCHHHHHHHH-HHHCCSEEEEESEE
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHH----H-cCCceEEecCCCCCCCCHHHHHHHH-HhCCCCEEEEECCC
Confidence 4788888888999999999999999974 2331 2 6888888774 3899999999 55 79999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh-
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH- 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~- 150 (324)
||||.+.|+++|.++|+++|+++|+|++|+.. ..+....++|+++.|+||+++++ ..+ |+++.++++++.+....
T Consensus 154 nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~-~g~-g~~~~~~~~~~~~~~~~~ 231 (396)
T 2ch1_A 154 SSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAP-PGI-TPISISPKALDVIRNRRT 231 (396)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCC-SSC-EEEEECHHHHHHHHTCSS
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCC-CCe-EEEEECHHHHHhhhhccC
Confidence 99999999999999999999999999998411 11223346899999999987664 344 89988888887775321
Q ss_pred -------------hhhh-----hccCCCCCHH---HHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCC
Q 020548 151 -------------QGAL-----MLLGPTMNPK---VAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 207 (324)
Q Consensus 151 -------------~~~~-----~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~ 207 (324)
.+.. ....++.... ++..++... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 309 (396)
T 2ch1_A 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKD-- 309 (396)
T ss_dssp CCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCS--
T ss_pred cccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCC--
Confidence 0000 0111222222 222222222 23556677788999999999998866554332
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
.....+.++++.++...+...+.+.|.
T Consensus 310 -------------~~~~~~~~~~~~~~~~~~~~~~~~~L~ 336 (396)
T 2ch1_A 310 -------------PRHRLPTVTGIMIPKGVDWWKVSQYAM 336 (396)
T ss_dssp -------------GGGBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred -------------ccccCCceEEEEcCCCCCHHHHHHHHH
Confidence 000134588998863233556666664
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=200.73 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=156.9
Q ss_pred chHHHHHHHccCCCC--------------EEEEc-CCCchhHHHHHhh--hcCcccceeEEEecC----------CCHHH
Q 020548 2 SAISSVLMQLCSSGG--------------HVVAA-RTLYGGTHALLTH--FFPRACNITTTFVDI----------SDHEM 54 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd--------------~vl~~-~p~y~~~~~~~~~--~~~~~~g~~~~~~~~----------~d~~~ 54 (324)
+|+..++++++++|| +|+++ .|+|+.+...+.. .... .|..+..++. .|+++
T Consensus 117 ~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~~ 195 (444)
T 3if2_A 117 NAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA-VLPHIDEVTHDGEEGFFKYRVDFEA 195 (444)
T ss_dssp HHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEE-CCCEEEEEEETTEEEEEEEECCHHH
T ss_pred HHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhc-cCceEEecccccccCccccCCCHHH
Confidence 578889999999998 78876 8999988753210 0111 4556655542 38999
Q ss_pred HHHh---hhcCCceEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCC----CC---ccCCCCcEEEeCC
Q 020548 55 VNSA---IVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLV----LS---PARLGADVVVHSI 121 (324)
Q Consensus 55 l~~~---l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~----~~---~~~~~~d~~~~S~ 121 (324)
|+++ + ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+. .. +...+.+++++|+
T Consensus 196 l~~~l~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 274 (444)
T 3if2_A 196 LENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSL 274 (444)
T ss_dssp HHTCHHHH-TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEES
T ss_pred HHHHHHhc-CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEech
Confidence 9998 5 678999999999999999988 8889999999999999999995422 11 1123688999999
Q ss_pred ccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH---HH-HHHHHHHHHHHHHHHHHhC
Q 020548 122 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~L~~~ 197 (324)
||+ +++|.|+ ||++.++++++.+...... ....++.+.+.++..++...... .. ..+.+.++++.+.+.|++.
T Consensus 275 sK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (444)
T 3if2_A 275 SKI-GLPGMRT-GIIVADAKVIEAVSAMNAV-VNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQA 351 (444)
T ss_dssp TTT-TCGGGCC-EEEECCHHHHHHHHHHHHH-HHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-cCCCCce-EEEEECHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997 7889997 9999999999988876652 22334444444444444443322 12 3345677888888888763
Q ss_pred -C---CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 198 -G---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 198 -~---~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
+ ..+..|. .|.++|+.++. ..+...+.+.+..
T Consensus 352 l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~ 388 (444)
T 3if2_A 352 LGDYPLMIHKPE-------------------GAIFLWLWFKDLPISTLDLYERLKA 388 (444)
T ss_dssp SSSSSEEEECCC-------------------BSSEEEEEETTCSSCHHHHHHHHHH
T ss_pred cccCCceEecCC-------------------ccEEEEEEcCCCCCCHHHHHHHHHH
Confidence 2 2333343 57789999874 3345667777653
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=198.33 Aligned_cols=277 Identities=15% Similarity=0.122 Sum_probs=179.7
Q ss_pred chHHHHHHHccC----CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLCS----SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~~----~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++++ +||+|+++.++|+++...+..+ .. .|.++..++.+ |++++++++ ++++++|+++++
T Consensus 96 ~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 172 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHV 172 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSB
T ss_pred HHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HH-cCCEEEEeccCCCCccCHHHHHHhc-CCCcEEEEEeCC
Confidence 467777777663 8999999999999998777433 22 58888888875 899999999 789999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcC-C-CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-V-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~-~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|+++|+++|+++|+|++|+.. . .+....++|++++|+||+++++| + |+++.+++..+.+....
T Consensus 173 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~~~~~~~~ 249 (423)
T 3lvm_A 173 NNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQM 249 (423)
T ss_dssp CTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSS
T ss_pred CCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC--e-EEEEEeccccCCCCccc
Confidence 999999999999999999999999999998332 2 33445578999999999887665 4 99988876655544332
Q ss_pred hhhh---hccCCCCCHHHHHH---HhcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhccC
Q 020548 151 QGAL---MLLGPTMNPKVAFE---LSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 151 ~~~~---~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+.. ....+++....... .+... ..++...+++.++++++.+.|++. +..+..+.-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 313 (423)
T 3lvm_A 250 HGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLE---------------- 313 (423)
T ss_dssp CSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCST----------------
T ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcc----------------
Confidence 1000 01122223222222 12111 124566677889999999999887 445543320
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
...++++.|.+++ .+...+.+.+.. +.+..|..+.... ..........+.. ++.+|++++
T Consensus 314 ~~~~~~~~~~~~~-~~~~~l~~~l~~------i~v~~g~~~~~~~--------~~~~~~~~~~g~~~~~~~~~iRi~~~- 377 (423)
T 3lvm_A 314 HGAPNILNVSFNY-VEGESLIMALKD------LAVSSGSACTSAS--------LEPSYVLRALGLNDELAHSSIRFSLG- 377 (423)
T ss_dssp TBCTTEEEEEETT-SCHHHHHHHTTT------EECBCCCC-------------CCCCHHHHHHTCCHHHHHTEEEEECC-
T ss_pred ccCCCeEEEEeCC-CCHHHHHHHHhh------heeccCccccCCC--------ccccHHHHHhCCCccccCceEEEECC-
Confidence 0134577888753 234556666653 2334343221100 0001112223433 489999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
...++++++.+.++|+++
T Consensus 378 ~~~t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 378 RFTTEEEIDYTIELVRKS 395 (423)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 766666555555555443
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=196.82 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=137.8
Q ss_pred chHHHH--HHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----C---CHHHHHHhhhc--CCceEEEEe
Q 020548 2 SAISSV--LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~l~~--~~~~~v~~~ 70 (324)
+|+..+ +.+++++||+|++++|+|+++...++ ..|.++..++. + |++++++.+++ +++++++++
T Consensus 128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 202 (420)
T 4f4e_A 128 GALKIGADFLRTLNPKAKVAISDPSWENHRALFD-----MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHA 202 (420)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 467777 44568999999999999999988874 36777777766 2 89999999932 678999999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----------cCCCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----------~~~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++.... ...+.+++++|+||.|+++|+|+ ||+
T Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~ 281 (420)
T 4f4e_A 203 CCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV-GAL 281 (420)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE-EEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc-EEE
Confidence 99999999965 6688999999999999999997765431 12367899999999999899997 998
Q ss_pred Ec---ChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 137 CG---PANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 137 ~~---~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+. ++++++.+...... ......+...+..+...+... .+++...+++.++++.+.+.|++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 282 SIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 55655543322110 111222333333333333331 224566677899999999999987
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=194.57 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=136.7
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhc-CCceEEEEec
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ-GRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~-~~~~~v~~~~ 71 (324)
+|+..+++.++. | |+|++++|+|+.+...++ ..|.++..++. .|++++++++.+ ++++++++++
T Consensus 108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~ 181 (405)
T 3k7y_A 108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIE-----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQI 181 (405)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHH-----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHH-----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeC
Confidence 477888888877 8 999999999999998884 37888877764 189999999843 4578888876
Q ss_pred -CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------c----C-CCCcEEEeCCccccccCCCeeEEE
Q 020548 72 -ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------A----R-LGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 72 -~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~----~-~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+|||||.+.+ +++|+++|+++|+++|+||+|.++.... . . .+..++++|+||.|+++|+|+ ||
T Consensus 182 ~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRi-G~ 260 (405)
T 3k7y_A 182 SCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERA-GA 260 (405)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTE-EE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccc-eE
Confidence 4999999975 6678889999999999999997765431 1 1 146799999999999999997 99
Q ss_pred EE---cChhHHHHHHHhhhh---hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHH----hCC
Q 020548 136 VC---GPANLVNSMMDLHQG---ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMK----KLG 198 (324)
Q Consensus 136 i~---~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~----~~~ 198 (324)
++ .++++++.+...... ....+.+...+..+..++... +.+....+++.++++.+.+.|+ +.+
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g 340 (405)
T 3k7y_A 261 LHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYN 340 (405)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 85 366666655432110 001111222333333334331 2234455668999999999999 776
Q ss_pred C
Q 020548 199 L 199 (324)
Q Consensus 199 ~ 199 (324)
.
T Consensus 341 ~ 341 (405)
T 3k7y_A 341 L 341 (405)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-25 Score=195.32 Aligned_cols=278 Identities=15% Similarity=0.155 Sum_probs=176.2
Q ss_pred chHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.+++ ++||+|+++.|+|+++...+..+ .. .|.++..++.+ |++++++++ ++++++|++++|
T Consensus 72 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 148 (384)
T 1eg5_A 72 ESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL-SM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAA 148 (384)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH-HH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESB
T ss_pred HHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHH-Hh-cCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEEECC
Confidence 47788888887 79999999999999987766321 12 58888888763 899999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcC--CEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH--HHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKG--VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VNSM 146 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~--~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~--~~~l 146 (324)
+||||.+.|+++|.++|+++| +++|+|++|+ ....+....++|++++|+||+++++| + ||++.++++ ...+
T Consensus 149 ~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G--~-G~~~~~~~~~~~~~~ 225 (384)
T 1eg5_A 149 NNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--V-GITYIRKGVPIRPLI 225 (384)
T ss_dssp CTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT--C-EEEEECTTSCCCCSB
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc--e-EEEEEcCCCcccccc
Confidence 999999999999999999999 9999999984 11122223478999999999988766 4 999888775 2111
Q ss_pred HHhhhhhhhccCCCCCHH---HHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 147 MDLHQGALMLLGPTMNPK---VAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
..... .......+.... .+..++.. ...++...+++.++++++.+.|++.+.++..|..
T Consensus 226 ~~~~~-~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------- 288 (384)
T 1eg5_A 226 HGGGQ-ERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLE---------------- 288 (384)
T ss_dssp CSSCT-TTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTT----------------
T ss_pred ccCcc-cccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcc----------------
Confidence 11000 000112223322 22222322 1345567777899999999999986655543320
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
.+.+.+++|.+++. +...+.+.+.. .|+ .+..|..+... +.. ........|.+ ++++|+|++
T Consensus 289 ~~~~~~~~~~~~~~-~~~~~~~~l~~---~gi-~v~~g~~~~~~--~~~------~~~~~~~~g~~~~~~~~~iRi~~~- 354 (384)
T 1eg5_A 289 ISLPNTLSVSFPNI-RGSTLQNLLSG---YGI-YVSTSSACTSK--DER------LRHVLDAMGVDRRIAQGAIRISLC- 354 (384)
T ss_dssp SBCTTEEEEECTTC-CHHHHHHHHHH---TTE-ECBC--------------------CHHHHTTCCHHHHHHEEEEECC-
T ss_pred cCCCCEEEEEeCCC-CHHHHHHHHhh---CCe-EEeccccccCC--CCc------chHHHHHcCCChhhcCCeEEEECC-
Confidence 01345788888632 34566666653 343 32333211100 000 00011122332 378999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
...++++++.+.++|+.+
T Consensus 355 ~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 355 KYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 765566565555555444
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=201.39 Aligned_cols=217 Identities=11% Similarity=0.104 Sum_probs=146.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee-EEEecCCCHHHHHHhhhc-CCceEEEEecCCCCcccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~ 79 (324)
+|+..++ .++++||+|+++.|+|+++...++ ..|.+ +..++.++-+.+...+.+ +++++|++++|+||||.+
T Consensus 106 ~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~ 179 (400)
T 3asa_A 106 VDLFRLL-SFFGPNQTVAIQDPSYPAYLDIAR-----LTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTV 179 (400)
T ss_dssp HHHHHHH-HHHCSSCEEEEEESCCHHHHHHHH-----HTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCC
T ss_pred HHHHHHH-HHcCCCCEEEECCCCcHHHHHHHH-----HcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCc
Confidence 4566654 456899999999999999988774 25766 777765411111111211 578999999999999999
Q ss_pred cC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCC----CCcEEEeCCccccccCCCeeEEEEEcChhH----
Q 020548 80 AN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANL---- 142 (324)
Q Consensus 80 ~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~----~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~---- 142 (324)
.+ +++|+++|+++|+++|+||+|+++... ...+ +.+++++|+||++|++|.|+ ||+++++++
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri-G~~~~~~~~~~~~ 258 (400)
T 3asa_A 180 LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL-GWTVIPQELTYAD 258 (400)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC-EEEECCTTCBCTT
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe-eEEeeChhhccch
Confidence 86 567889999999999999999655321 1122 24699999999999899997 999999887
Q ss_pred ---HHHHHHhhhhhhhcc-CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 143 ---VNSMMDLHQGALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 143 ---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++.+..... ....+ .+.+.+.++..++... +++...+++.++++.+.+.|++.+.++..|.
T Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------- 323 (400)
T 3asa_A 259 GHFVIQDWERFL-STTFNGASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLATGFEVFGGE------------- 323 (400)
T ss_dssp SCBHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------
T ss_pred hhhHHHHHHHHh-ccCccCCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------
Confidence 666543222 11122 2333333333333322 4556667788999999999999876655333
Q ss_pred hccCCCcceEEEEE-eCCHHHHHHHHHHh
Q 020548 219 ANKEYGFGGLLCLD-METEEKANRLMNYL 246 (324)
Q Consensus 219 ~~~~~~~g~~~~~~-l~~~~~~~~~~~~l 246 (324)
.|.++|+. ++...+...+.+.+
T Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~~l 346 (400)
T 3asa_A 324 ------HAPYLWVKPTQANISDRDLFDFF 346 (400)
T ss_dssp ------SSSEEEEECCCTTCCTTTHHHHH
T ss_pred ------CceEEEEeccCCCCCHHHHHHHH
Confidence 46789999 76322223344443
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=194.37 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=153.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++.+++++||+|++++|+|+++. .. ..... .|.++..++. .|++++++++ ++ ++++|++++|+||
T Consensus 81 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~np 156 (393)
T 2huf_A 81 GGMEATLCNLLEDGDVILIGHTGHWGDR-SA-DMATR-YGADVRVVKSKVGQSLSLDEIRDAL-LIHKPSVLFLTQGDSS 156 (393)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHH-HH-HHHHH-TTCEEEEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETT
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcchHH-HH-HHHHH-cCCeeEEEeCCCCCCCCHHHHHHHH-hccCCcEEEEEccCCC
Confidence 4788888888999999999999998853 11 11122 6788878774 3899999999 65 8999999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHHHHHHHhh--
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLH-- 150 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~~l~~~~-- 150 (324)
||.+.|+++|.++|+++|+++|+|++++.. ..+....++|++++|+||+++ ++| .|+++.++++++.+....
T Consensus 157 tG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G---~G~~~~~~~~~~~~~~~~~~ 233 (393)
T 2huf_A 157 TGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPG---ITPVSFSHRAVERYKRRNTK 233 (393)
T ss_dssp TTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSS---CEEEEECHHHHHHHHTCSSC
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCC---eEEEEECHHHHHHHhhcCCC
Confidence 999999999999999999999999998321 122223478999999999865 444 389999999888886541
Q ss_pred -hhhh----------------hccCCCCCHHHHHH---HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 151 -QGAL----------------MLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 151 -~~~~----------------~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
.++. ....+++....... ++... ..++...+++.++++++.+.|++.+.++..|.-
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-- 311 (393)
T 2huf_A 234 VKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPK-- 311 (393)
T ss_dssp CSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG--
T ss_pred CceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcc--
Confidence 1000 01112223222221 22222 125566777889999999999988665543320
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhh
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 247 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~ 247 (324)
...+.++++.++...+..++.+.+.
T Consensus 312 --------------~~~~~~~~~~~~~~~~~~~~~~~L~ 336 (393)
T 2huf_A 312 --------------DRLSTVTTIKVPQGVDWLKAAQYAM 336 (393)
T ss_dssp --------------GBCTTEEEEECCTTCCHHHHHHHHH
T ss_pred --------------ccCCcEEEEEcCCCCCHHHHHHHHH
Confidence 0124588898863223456666654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-25 Score=193.04 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=152.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..+++++ ||+|+++ |+|+++...++ ..|.++..++.+ |++++ +++++|++++|+|||
T Consensus 87 ~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l------~~~~~v~l~~p~npt 151 (335)
T 1uu1_A 87 EIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-----AVGAKFLEVPLTKDLRIPEVNV------GEGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHHHHHHS---SEEEECS-SSCHHHHHHHH-----HHTCEEEECCCCTTSCCCCCCC------CTTEEEEEESSCTTT
T ss_pred HHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-----HcCCeEEEeccCCCCCCCHHHc------CCCCEEEEeCCCCCC
Confidence 5777888876 8999999 99999988774 267888777653 33333 478999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCC-Ccc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.+.+.+++.++++..| ++|+||+|+.+.. ... ..+.+++++|+||++|++|.|+ ||+++++++++.+.....
T Consensus 152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~ 229 (335)
T 1uu1_A 152 GHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRV-GYVVASEKFIDAYNRVRL 229 (335)
T ss_dssp CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCe-EEEEeCHHHHHHHHHhcC
Confidence 99999999999999889 9999999954422 111 2367899999999998889997 999999999988877654
Q ss_pred hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 152 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
. +..+.+.+.++..++....+++...+++.++++++.+.|++.+..+. |. .|+++++
T Consensus 230 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~~~~ 286 (335)
T 1uu1_A 230 P---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRIT-DS-------------------RGNFVFV 286 (335)
T ss_dssp T---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC-------------------CSSEEEE
T ss_pred C---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEc-CC-------------------CCeEEEE
Confidence 1 22233333333334444334566677788999999999998765432 43 4668899
Q ss_pred EeCCHHHHHHHHHHhhc
Q 020548 232 DMETEEKANRLMNYLQN 248 (324)
Q Consensus 232 ~l~~~~~~~~~~~~l~~ 248 (324)
.++. .+...+.+.+..
T Consensus 287 ~~~~-~~~~~~~~~l~~ 302 (335)
T 1uu1_A 287 FMEK-EEKERLLEHLRT 302 (335)
T ss_dssp ECCT-HHHHHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHHH
Confidence 9875 445667777663
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=193.36 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=175.4
Q ss_pred chHHHHHHHccCCCCEEEEcC-CCchh-HHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAAR-TLYGG-THALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~-p~y~~-~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~ 73 (324)
+|+..++++++++||+|++.+ ++|+. +...+. . .|.++..++. .|++++++++.+. ++++|++++++
T Consensus 67 ~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (366)
T 1m32_A 67 YAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG----L-MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSE 141 (366)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH----H-HTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH----H-hCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEeccc
Confidence 578889999999999988776 55554 333332 2 5777777765 3899999999443 68999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++|+++|+++|+|++|+... .+....++|++++|+||+++++ ..+ |+++.++++++.+.....
T Consensus 142 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~-~g~-G~~~~~~~~~~~~~~~~~ 219 (366)
T 1m32_A 142 TTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGV-PGF-AFVIAREQKLAACKGHSR 219 (366)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCC-SSE-EEEEEEHHHHTTCTTCCS
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCC-Cce-EEEEECHHHHHhhcCCCC
Confidence 999999999999999999999999999984322 2222346899999999988553 334 999999887766543210
Q ss_pred h-----------h-h--hccCCCCCHHHHH---HHhcCccc---HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCch
Q 020548 152 G-----------A-L--MLLGPTMNPKVAF---ELSERIPH---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 211 (324)
Q Consensus 152 ~-----------~-~--~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~ 211 (324)
. . . .....++...... ..+..... ++...+++.++++++.+.|++.+.++..|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----- 294 (366)
T 1m32_A 220 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDE----- 294 (366)
T ss_dssp CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG-----
T ss_pred CccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCch-----
Confidence 0 0 0 0001233332222 12222211 3456677789999999999988655443310
Q ss_pred hHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 212 HELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
...+.++++.+++ ..+...+.+.+.. .|+ .+..| .. ..+
T Consensus 295 -----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~~----------~~--------------~~~ 335 (366)
T 1m32_A 295 -----------LHSPIITAFYSPEDPQYRFSEFYRRLKE---QGF-VIYPG----------KV--------------SQS 335 (366)
T ss_dssp -----------GBCSSEEEEECCCCTTCCHHHHHHHHHH---TTE-ECEEC----------CC--------------SSS
T ss_pred -----------hcCceEEEEEcCccCCCCHHHHHHHHHH---CCE-EEECC----------cC--------------CCC
Confidence 0135589999873 3345667777664 233 11111 10 024
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+++|+|++ ..+++++++.+.++|+++-
T Consensus 336 ~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 336 DCFRIGNI-GEVYAADITALLTAIRTAM 362 (366)
T ss_dssp CEEEEECC-SSCCHHHHHHHHHHHHHHC
T ss_pred CEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 78999999 8877888888888887664
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=199.01 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=130.9
Q ss_pred chHHHHHHHccCCCC----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 2 SAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+|+..++++++++|| +|++++|+|+++...++ ..|.++..++.+ .+.++ .+++++|++++||||||
T Consensus 102 ~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~d-~~~l~----~~~~k~v~l~~p~NPtG 171 (391)
T 3bwn_A 102 QLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-----YVRSGMYKWEGD-AWGFD----KKGPYIELVTSPNNPDG 171 (391)
T ss_dssp HHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-----TTCBTTEEEEEE-STTCC----CCSCEEEEEESSCTTTC
T ss_pred HHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-----HcCCeEEEecCC-HHHcC----CCCCEEEEECCCCCCCc
Confidence 578889999999999 99999999999998884 256666555542 22222 35789999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCCcCCCCcc--CCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhh
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 154 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~--~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~ 154 (324)
.+.+ +|++.++.+++++|+|++|..-...+. ..+.+++++|+||.|+++|+|+ ||++. ++++++.+...... .
T Consensus 172 ~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~l~~~l~~~~~~-~ 247 (391)
T 3bwn_A 172 TIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRI-GWALVKDKEVAKKMVEYIIV-N 247 (391)
T ss_dssp CCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHHHSCGGGCE-EEEEECCHHHHHHHHHHHHH-H
T ss_pred hhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhhcCCCccce-EEEEecCHHHHHHHHHHhcc-c
Confidence 9986 454422333499999999952111222 2368899999999999999997 99986 88999888876651 1
Q ss_pred hccCCCCCHHHHHHHhcC-----------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 155 MLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
..+.+.+.+.++..++.. ..++....+.+.++++.+.+.|++.+
T Consensus 248 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 302 (391)
T 3bwn_A 248 SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESD 302 (391)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233344444444444432 23455666778999999999999874
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=191.79 Aligned_cols=260 Identities=13% Similarity=0.053 Sum_probs=172.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|++++|+|+++. .. ..... .|.++..++.+ |++++++ +++++|++++++|||
T Consensus 62 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~npt 134 (352)
T 1iug_A 62 LAMEALVKNLFAPGERVLVPVYGKFSER-FY-EIALE-AGLVVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETST 134 (352)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHH-TTCEEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTT
T ss_pred HHHHHHHHhccCCCCeEEEEeCCchhHH-HH-HHHHH-cCCceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCc
Confidence 5788888888999999999999999975 22 11112 67888887753 5555543 578999999999999
Q ss_pred ccccChHHHHHHHHhc--CCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHH-------
Q 020548 77 LAVANIPELSRLAHDK--GVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS------- 145 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~--~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~------- 145 (324)
|.+.|+++|.++|+++ |+++|+|++|+. ...+....+.|++++|+||+++++. .+ |+++.++++++.
T Consensus 135 G~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~-g~-G~~~~~~~~~~~~~~~~~~ 212 (352)
T 1iug_A 135 GALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPP-GL-GFVALSPRALERLKPRGYY 212 (352)
T ss_dssp TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCS-CE-EEEEECHHHHHTCCCCSST
T ss_pred ceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCC-ce-eEEEECHHHHHHhhCCCce
Confidence 9999999999999999 999999999842 1122223478999999999665542 34 999888887654
Q ss_pred --HHHhhhhh-hhccCCCCCHHHH---HHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 146 --MMDLHQGA-LMLLGPTMNPKVA---FELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 146 --l~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
+....... .....+++..... ..++... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------- 279 (352)
T 1iug_A 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKR------------- 279 (352)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSS-------------
T ss_pred eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccc-------------
Confidence 22111000 0112223332221 1222221 22566777789999999999998866554332
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
..++++++.+++..+...+.+.+.. .|+ .+..|. . ...++++|+|++
T Consensus 280 -----~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~~~----------~-------------~~~~~~iRi~~~- 326 (352)
T 1iug_A 280 -----FSPAVAAFYLPEGVPYARVKEAFAQ---RGA-VIAGGQ----------G-------------PLKGKVFRLSLM- 326 (352)
T ss_dssp -----BCTTCEEEECCTTCCHHHHHHHHHT---TTE-ECEECC----------G-------------GGTTTEEEECCC-
T ss_pred -----cCCeEEEEEcCCCCCHHHHHHHHHH---CCE-EEEeCC----------C-------------ccCCCEEEEEcc-
Confidence 1466899998733345667777764 233 222221 0 012478999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
..+++++++.+.++|+++
T Consensus 327 ~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 327 GAYDRYEALGVAGMFREV 344 (352)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 776667677777666654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=198.41 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=146.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccc---------eeEEEecCCCHHHHHHhhh-cCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---------ITTTFVDISDHEMVNSAIV-QGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~l~-~~~~~~v~~~~ 71 (324)
+++.. +.+++++||+|+++.|+|+++...++.... .+ .++.+++.++.+.+...+. .+++++|++++
T Consensus 130 ~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~ 206 (432)
T 3ei9_A 130 CDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQ--TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCS 206 (432)
T ss_dssp HHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTC--SCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEES
T ss_pred HHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCC--cccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeC
Confidence 35655 467789999999999999999888753321 11 2445554432111111121 35789999999
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----ccC----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.+ +++|+++|+++|+++|+||+|+.+... ... .+.+++++|+||.||++|.|+ ||++++
T Consensus 207 p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~-G~~~~~ 285 (432)
T 3ei9_A 207 PNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL-GWTVIP 285 (432)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC-EEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce-EEEEEC
Confidence 9999999975 667777899999999999999665322 111 146799999999999899997 999998
Q ss_pred hhH--------HHHHHHhhhhhhhccCCC-CCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 140 ANL--------VNSMMDLHQGALMLLGPT-MNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 140 ~~~--------~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
+++ .+.+...... ...+.+ +.+.++..++.. ..++....+++.++++.+.+.|++.+..+..|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--- 360 (432)
T 3ei9_A 286 KKLLYSDGFPVAKDFNRIICT--CFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK--- 360 (432)
T ss_dssp TTCBCTTSCBHHHHHHHHHHH--SCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECS---
T ss_pred hHHhhcchHHHHHHHHHHhcc--ccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCC---
Confidence 887 6777655431 122222 222222222221 233556677789999999999999877655443
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHh
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 246 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l 246 (324)
.|.++|+.+++ .....+.+.+
T Consensus 361 ----------------~~~~~~~~~~~-~~~~~~~~~l 381 (432)
T 3ei9_A 361 ----------------NAPYVWVHFPN-QSSWDVFAEI 381 (432)
T ss_dssp ----------------SSSEEEEECTT-SCHHHHHHHH
T ss_pred ----------------cceEEEEECCC-CCHHHHHHHH
Confidence 46789999973 2233444443
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=193.75 Aligned_cols=276 Identities=11% Similarity=0.097 Sum_probs=175.7
Q ss_pred chHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++++++ ++||+|++++++|+++...+.... + .|.++..++.+ |++++++++ ++++++|++++|
T Consensus 71 ~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~-~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 147 (382)
T 4hvk_A 71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQ-K-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHA 147 (382)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHH-H-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSB
T ss_pred HHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHH-h-cCCEEEEeccCCCCCcCHHHHHHHh-ccCceEEEEECC
Confidence 47788888887 899999999999999988774332 2 58888888765 899999999 789999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCc-C-CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~-~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|+ +|+|++|+. . ..+....++|++++|+||++|++| .|+++.+++. .+.+..
T Consensus 148 ~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~ 221 (382)
T 4hvk_A 148 NNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG---VGALWIRKEA--KLQPVI 221 (382)
T ss_dssp CTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT---CEEEEEETTC--CCCCSS
T ss_pred CCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc---eEEEEEcCcc--CcCccc
Confidence 9999999999999999999999 999999832 2 222233478999999999887665 3777665543 111111
Q ss_pred hh---hhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccC
Q 020548 151 QG---ALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+ ......+++.......+...+ ..++...+++.++++++.+.|++.+. .+..|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 285 (382)
T 4hvk_A 222 LGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPE---------------- 285 (382)
T ss_dssp CSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS----------------
T ss_pred ccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc----------------
Confidence 10 001112333332222221111 23456667778899999999987743 4443320
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
...+++++|.+++ .+...+.+.+.. .|+ .++.|..+..... ........++.. ++++|+|++
T Consensus 286 ~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~~~~~~~--------~~~~~~~~~g~~~~~~~~~iRl~~~- 351 (382)
T 4hvk_A 286 KRLPNNVNVRFSY-IEGESIVLSLDM---AGI-QASTGSACSSKTL--------QPSHVLMACGLKHEEAHGTLLLTLG- 351 (382)
T ss_dssp SBCTTEEEEEETT-CCHHHHHHHHHH---TTC-BCBCC----------------CCCHHHHHTTCCHHHHHTEEEEECC-
T ss_pred ccCCCEEEEEECC-CCHHHHHHHHHH---CCE-EEeeCCccCCCCC--------cchHHHHHcCCChhhcCCeEEEEcC-
Confidence 0134588888863 234556666654 343 4444433221100 000111223332 589999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
..+++++++.+.++|+.+
T Consensus 352 ~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 352 RYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 776666655555555443
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=194.07 Aligned_cols=265 Identities=12% Similarity=0.094 Sum_probs=176.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++++++++||+|++++|.|.+.... ..... .|.++..++.+ |++++++++ ++++++|++++|+|||
T Consensus 82 ~al~~~~~~~~~~gd~vi~~~~~~~~~~~~--~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~npt 157 (376)
T 3f0h_A 82 GSMEAVVMNCFTKKDKVLVIDGGSFGHRFV--QLCEI-HEIPYVALKLEHGKKLTKEKLYEYD-NQNFTGLLVNVDETST 157 (376)
T ss_dssp HHHHHHHHHHCCTTCCEEEEESSHHHHHHH--HHHHH-TTCCEEEEECCTTCCCCHHHHHTTT-TSCCCEEEEESEETTT
T ss_pred HHHHHHHHhccCCCCeEEEEeCChhhHHHH--HHHHH-cCCceEEEeCCCCCCCCHHHHHHhh-ccCceEEEEecccCCc
Confidence 578888999999999999999987764422 11112 57777766543 899999988 7899999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCCCcCCC--CccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
|.+.|+++|+++|+++|+++|+|++++.... +....++|+++.|+||+++ ++| .|+++.++++.+.+.......
T Consensus 158 G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G---~g~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3f0h_A 158 AVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPG---ISVIVLAPRGVERVEKSKVRT 234 (376)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSS---CEEEEECHHHHHHHHTCCCCC
T ss_pred ceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCc---eEEEEECHHHHHHhhcCCCCc
Confidence 9999999999999999999999999844322 2223478999999999998 444 388999999888876422100
Q ss_pred -----------h--hccCCCCCHHH---HHHHhcCc--c-cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 154 -----------L--MLLGPTMNPKV---AFELSERI--P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 154 -----------~--~~~~~~~~~~~---~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
. .....++.... +...+..+ . .++...+++.++++++.+.|++.+..+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------- 305 (376)
T 3f0h_A 235 MYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSES--------- 305 (376)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSS---------
T ss_pred eeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccc---------
Confidence 0 01122333311 11122111 1 2456667778889999999988765443222
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
....++.+..++ .+...+.+.+.. +.|+ .+..| .. ...++++|+
T Consensus 306 ---------~~~~~~~~~~~~-~~~~~l~~~l~~--~~gi-~v~~g----------~~-------------~~~~~~lRi 349 (376)
T 3f0h_A 306 ---------PANGVTSVHPTT-ANAYDIFLKLKD--EYGI-WICPN----------GG-------------EMKDTIFRV 349 (376)
T ss_dssp ---------BBTTEEEEEESS-SCHHHHHHHHHH--HSSE-ECEEC----------CG-------------GGTTTCEEE
T ss_pred ---------cCceEEEEeCCC-CCHHHHHHHHHH--hCCE-EEecC----------cc-------------ccCCCEEEE
Confidence 123355555432 234556666653 1233 22212 00 012478999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
|++ ...++++++.+.++|+++-++
T Consensus 350 s~~-~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 350 GHI-GALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp ECC-SSCCHHHHHHHHHHHHHHHHT
T ss_pred ecC-CCCCHHHHHHHHHHHHHHHHh
Confidence 999 777777788888777766443
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=197.06 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=136.7
Q ss_pred chHHH--HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C-----CHHHHHHhhhc--CCceEEEE
Q 020548 2 SAISS--VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAIVQ--GRTKVLYF 69 (324)
Q Consensus 2 ~ai~~--~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~-----d~~~l~~~l~~--~~~~~v~~ 69 (324)
+|+.. .+.+++.+||+|++++|+|+++...++.++. ..|.++..++. + |++++++++.+ ++++++++
T Consensus 130 ~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~-~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~ 208 (448)
T 3meb_A 130 GSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFN-KLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFH 208 (448)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHC-TTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHH-hCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 35555 4456688999999999999999988852221 25777666654 2 89999999843 46788889
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------------CCCCcEEEeCCccccccCCCeeEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------------~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|+++..... ....++++.|+||.|+++|.|+ |
T Consensus 209 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G 287 (448)
T 3meb_A 209 ACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI-G 287 (448)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC-E
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccc-e
Confidence 999999999976 55699999999999999999977654321 1245688999999999999997 9
Q ss_pred EE--Ec---------Ch----hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHH
Q 020548 135 AV--CG---------PA----NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFAR 192 (324)
Q Consensus 135 ~i--~~---------~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~ 192 (324)
|+ +. ++ ++.+.+..... ......+.+.+..+..++... ..++...+++.++++.+.+
T Consensus 288 ~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~ 366 (448)
T 3meb_A 288 CLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR-KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHA 366 (448)
T ss_dssp EEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeccccccccCCHHHHHHHHHHHHHHHh-cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 65 44 45555554333 111122223333333344332 2245566778899999999
Q ss_pred HHHhCC
Q 020548 193 RMKKLG 198 (324)
Q Consensus 193 ~L~~~~ 198 (324)
.|++.+
T Consensus 367 ~L~~~~ 372 (448)
T 3meb_A 367 SLAKRK 372 (448)
T ss_dssp HHHHTT
T ss_pred HHHhhC
Confidence 999874
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=191.16 Aligned_cols=274 Identities=12% Similarity=0.099 Sum_probs=173.2
Q ss_pred chHHHHHHHcc----CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+..++.++. ++||+|++++|+|+++...+..+ .. .|.++..++.+ |++++++++ ++++++|+++++
T Consensus 71 ~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~ 147 (382)
T 4eb5_A 71 EANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHA 147 (382)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-TT-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSB
T ss_pred HHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHH-Hh-CCcEEEEeccCCCCccCHHHHHHHh-cCCCeEEEEecc
Confidence 47788888887 89999999999999988777432 23 68888888763 899999999 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+||||.+.|+++|.++|+++|++ |+|++|+... .+....++|++++|+||++|++| + |+++.+++. .+.+..
T Consensus 148 ~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~--~l~~~~ 221 (382)
T 4eb5_A 148 NNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVI 221 (382)
T ss_dssp CTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTC--CCCCSS
T ss_pred CCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc--e-EEEEEcccc--ccCcee
Confidence 99999999999999999999999 9999984211 11122368999999999987655 3 888776653 111111
Q ss_pred hh---hhhccCCCCCHHHHH---HHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccC
Q 020548 151 QG---ALMLLGPTMNPKVAF---ELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
.+ ......+++...... ..+... ..++...+++.++++++.+.|++.+ .++..|.-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------- 285 (382)
T 4eb5_A 222 LGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPE---------------- 285 (382)
T ss_dssp CSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS----------------
T ss_pred cCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcc----------------
Confidence 10 001122223322211 122111 2245566777889999999998873 34432220
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
...+++++|.+++ .+...+.+.+.. .|+ .+..|..+... .+ ........+|.+ ++++|+|++
T Consensus 286 ~~~~~~~~~~~~~-~~~~~~~~~l~~---~gi-~v~~g~~~~~~------~~--~~~~~~~~~g~~~~~~~~~iRi~~~- 351 (382)
T 4eb5_A 286 KRLPNNVNVRFSY-IEGESIVLSLDM---AGI-QASTGSACSSK------TL--QPSHVLMACGLKHEEAHGTLLLTLG- 351 (382)
T ss_dssp SBCTTEEEEEETT-SCHHHHHHHHHH---HTC-BCBCCCGGGTS------SC--CCCHHHHHTTCCHHHHTTEEEEECC-
T ss_pred cCCCCEEEEEeCC-cCHHHHHHHHHH---CCE-EEeccccccCC------CC--cccHHHHHcCCChhccCCeEEEECC-
Confidence 0135688898873 234566666653 343 33434322110 00 011112223432 579999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 020548 299 LGTLDQRWSQFEKALS 314 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~ 314 (324)
...+++.++.+.++|+
T Consensus 352 ~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 352 RYNTDEDVDRLLEVLP 367 (382)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7655555554444443
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-24 Score=191.31 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=138.2
Q ss_pred chHHHHH--HHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----C---CHHHHHHhhhc--CCceEEEEe
Q 020548 2 SAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~--~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~---d~~~l~~~l~~--~~~~~v~~~ 70 (324)
+|+..++ .+++++||+|+++.|+|+++...++ ..|.++..++. . |++++++++++ +++++++++
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~ 180 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHP 180 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHH-----HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECS
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHH-----HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeC
Confidence 4667774 4567899999999999999988874 26778888776 2 89999999932 578899999
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----------cCCCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----------~~~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+.+.... ...+.+++++|+||.++++|.|+ ||+
T Consensus 181 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ri-G~~ 259 (397)
T 3fsl_A 181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGL 259 (397)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCC-EEE
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCe-eEE
Confidence 99999999965 5689999999999999999997765431 12367899999999999899997 999
Q ss_pred Ec---ChhHHHHHHHhhhhh---hhccCCCCCHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 137 CG---PANLVNSMMDLHQGA---LMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 137 ~~---~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+. ++++++.+....... .....+.+.+..+..++.. ..++....+++.++++.+.+.|++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 334 (397)
T 3fsl_A 260 SVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 63 456665443221101 0112223333333333433 23345666778999999999999873
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=191.73 Aligned_cols=258 Identities=8% Similarity=0.031 Sum_probs=174.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhH-HHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGT-HALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~-~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++ +.+++..+.|... ...+ .. .|.++..++.+ |+++++ + ++++++|++++|+||
T Consensus 72 ~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~----~~-~g~~~~~v~~~~~~~~d~~~l~--~-~~~~~~v~~~~~~np 142 (362)
T 3ffr_A 72 EIWERIIQNCVEK-KSFHCVNGSFSKRFYEFA----GE-LGREAYKEEAAFGKGFYPADIT--V-PADAEIICLTHNETS 142 (362)
T ss_dssp HHHHHHHHHHCSS-EEEEEECSHHHHHHHHHH----HH-TTCEEEEEECCTTCCCCGGGCC--C-CTTCCEEEEESEETT
T ss_pred HHHHHHHHhccCC-cEEEEcCcHHHHHHHHHH----HH-hCCCeEEEecCCCCCCCHHHHh--c-cCCccEEEEEcCCCC
Confidence 5788899998888 5555555555522 1222 13 68888887654 778887 5 789999999999999
Q ss_pred cccccChHHHHHHHHhc-CCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccc-cCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 76 TLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSPARL-GADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~-~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
||.+.|+++|.++|+++ |+++|+|++|+.... +.+. .+|++++|+||+++ ++| .|+++.++++++.+.....+
T Consensus 143 tG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-~~~~~~~d~~~~s~~K~~~~~~G---~g~~~~~~~~~~~~~~~~~g 218 (362)
T 3ffr_A 143 SGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-KFDWTKIDSVFFSVQKCFGLPAG---LGVWILNDRVIEKSKALLAK 218 (362)
T ss_dssp TTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-CCCTTSCSEEEEETTSTTCCCSC---CEEEEEEHHHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHhCCCCEEEEecccccCCc-ccChhHCcEEEEecccccCCCCc---eEEEEECHHHHHHhhhcccc
Confidence 99999999999999999 999999999843321 2222 28999999999998 555 38888898888888765431
Q ss_pred hh-----------------hccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 153 AL-----------------MLLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 153 ~~-----------------~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
.. .....++...... .++..+ ..++...+++.++++++.+.|++. +.++..|.
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 294 (362)
T 3ffr_A 219 RKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVED---- 294 (362)
T ss_dssp TCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSC----
T ss_pred CCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCC----
Confidence 00 0002222322211 122211 125667777899999999999998 44554322
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
.....+.++++.+++ +..++.+.+.. .|+ .+..| .. ...+
T Consensus 295 -----------~~~~~~~~~~~~~~~--~~~~~~~~l~~---~gi-~~~~g----------~~-------------~~~~ 334 (362)
T 3ffr_A 295 -----------AKLRSMTTIVANTTM--LPGEINKILEP---FDM-AVGAG----------YG-------------SKKE 334 (362)
T ss_dssp -----------GGGBCSSEEEEEESS--CHHHHHHHHGG---GTE-EEEEC----------SG-------------GGTT
T ss_pred -----------hhhcCCceEEEecCC--CHHHHHHHHHH---CCe-EEecC----------cc-------------ccCC
Confidence 001246688999976 56677777774 243 21211 10 1125
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+++|+|++ ..+++++++.+.++|+++.
T Consensus 335 ~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 335 TQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp TEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 78999999 8888888999998887653
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=191.03 Aligned_cols=254 Identities=17% Similarity=0.135 Sum_probs=164.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHH---HHhhhcCcccceeEEEecC----CCHHHHHHhhhcC------CceEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHA---LLTHFFPRACNITTTFVDI----SDHEMVNSAIVQG------RTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~---~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~~------~~~~v~ 68 (324)
+|+..++.++++|||+|++++|+|.+... .+ ...|.++.+++. .|++++++++ ++ ++++|+
T Consensus 64 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~~g~~~~~v~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 64 MGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMA-----VLSGVMPHPVPGKNGAMDPDDVRKAI-RPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHH-----HHTCCEEEEECEETTEECHHHHHHHS-CCSCTTSCCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCcchhhhccccchh-----hccCeEEEEecCCCCccCHHHHHHHh-ccccccccCceEEE
Confidence 35677788889999999999999976542 22 125777776621 2899999998 43 699999
Q ss_pred EecCCCCc-ccccC---hHHHHHHHHhcCCEEEEcCCCCc--C---CCCccC--CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 69 FESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP--L---VLSPAR--LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 69 ~~~~~npt-G~~~~---~~~i~~l~~~~~~~~ivD~~~~~--~---~~~~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+++|+||| |.+.| +++|+++|+++|+++++|++|.. + ..++.. .+.|.++.|+||+++++ +||+++
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~ 214 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP---VGSVVV 214 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS---SCEEEE
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC---ceEEEE
Confidence 99999999 99876 56889999999999999998621 1 112221 25788888999999765 345778
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
+++++++.+....... ..+.......+......++.....+++..++++++.+.|++.+..+..+.
T Consensus 215 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------------ 280 (347)
T 1jg8_A 215 GDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPED------------ 280 (347)
T ss_dssp ECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGG------------
T ss_pred cCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCC------------
Confidence 8988888887665421 11112222222221111111112233445677888888887755432111
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
..++++++.++. ..+..++.+.+.. .|+ .+. +. + .+++|+|+
T Consensus 281 ------~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~----------~~---------------~--~~~iRl~~ 323 (347)
T 1jg8_A 281 ------VKTNMVILRTDNLKVNAHGFIEALRN---SGV-LAN----------AV---------------S--DTEIRLVT 323 (347)
T ss_dssp ------CCSSEEEEECTTSSSCHHHHHHHHHH---HTE-ECE----------EE---------------E--TTEEEEEC
T ss_pred ------CcceEEEEEcccccCCHHHHHHHHHH---CCC-EEe----------cC---------------C--CCeEEEEe
Confidence 146688999863 2345667777753 333 111 10 1 36799999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 020548 297 GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ...++++++.+.++|+++
T Consensus 324 ~-~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 324 H-KDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp C-TTSCHHHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHH
Confidence 8 766777777777666654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=194.12 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=166.9
Q ss_pred chHHHHHHHcc----CCCC-EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC----SSGG-HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~----~~gd-~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..++++++ ++|| +|+++.++|+++...+..+. . .|.++..++.+ |++++++++ ++++++|++++
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~-~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~ 167 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLA-G-RGFEVDFLTPGPSGRISVEGVMERL-RPDTLLVSLMH 167 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHH-T-TTCEEEEECCCTTCCCCHHHHHTTC-CTTEEEEECCS
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHH-h-cCCeEEEEccCCCCCcCHHHHHHhc-CCCceEEEEEC
Confidence 57888888887 8999 99999999999888775442 3 68899888875 899999999 78999999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCccccccCCCeeEEEEE-cCh-hHH---H
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVC-GPA-NLV---N 144 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~-~~~---~ 144 (324)
|+||||.+.|+++|.++|+++|+++|+|++|+... .+.... +|++++|+||++|++| + |+++ .++ ++. .
T Consensus 168 ~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~ 243 (400)
T 3vax_A 168 VNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERV 243 (400)
T ss_dssp BCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBC
T ss_pred CCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhcccccc
Confidence 99999999999999999999999999999984221 222233 8999999999776554 3 6666 554 111 1
Q ss_pred HHHHhhhh---hhhccCCCCCHHHHHHH---hcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 145 SMMDLHQG---ALMLLGPTMNPKVAFEL---SER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 145 ~l~~~~~~---~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
.+.+...+ ......+++.......+ +.. ...++...+++.++++++.+.|+..+..+..|.-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------- 312 (400)
T 3vax_A 244 PLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQD----------- 312 (400)
T ss_dssp CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTT-----------
T ss_pred ccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcc-----------
Confidence 11111100 00122233333222221 111 1235666777888999999999822345443330
Q ss_pred HhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEE
Q 020548 218 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVR 293 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR 293 (324)
...++++++.+++ .+...+.+.+. . | +.++.|..+...... .+.....+|.+ ++++|
T Consensus 313 -----~~~~~~~~~~~~~-~~~~~l~~~L~-~---g-i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iR 373 (400)
T 3vax_A 313 -----HVVPHILNLSFED-VDAEAFLVTLK-D---L-VAVATGSASTSASFT--------PSHVLRAMGLPEEAASKSLR 373 (400)
T ss_dssp -----SBCTTEEEEECTT-CCHHHHHHHHH-H---H-HHHTTTTEEEEEEEC--------CHHHHHTTTCCHHHHTSEEE
T ss_pred -----cCCCCEEEEEeCC-CCHHHHHHHHh-c---C-cEEEecccccCCCCC--------ccHHHHHcCCCccccCceEE
Confidence 0135688888873 23445555554 2 2 244555433221100 11122233443 48999
Q ss_pred EEe-ccCCCHHHHHHHHHHHHHhhh
Q 020548 294 MSV-GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 294 ~s~-g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|+ | ...++++++.+.++|+++-
T Consensus 374 ls~~~-~~~t~e~i~~~~~~l~~~~ 397 (400)
T 3vax_A 374 FSWTP-GQATDLDVEELARGVAKLK 397 (400)
T ss_dssp EEEEE-C------------------
T ss_pred EEccC-CCCCHHHHHHHHHHHHHHh
Confidence 999 8 7777777777777776553
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-27 Score=210.97 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=155.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
++|+..++++++++||+|+++.|+|+++...++ ..|.++..++. .|++++++++.++++++|++++|
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~ 173 (392)
T 3b1d_A 99 VPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-----LNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNP 173 (392)
Confidence 357888888889999999999999999987763 25666666554 36788888883368899999999
Q ss_pred CCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----cc----C--CCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 73 SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----R--LGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 73 ~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~~----~--~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
+||||.+.+ +++|+++|+++|+++|+||+|+.+... +. . .+.++++.|+||+++++|.|+ ||+++
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~ 252 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN-SYAII 252 (392)
Confidence 999999975 889999999999999999999665421 11 1 356799999999999889997 99988
Q ss_pred Ch-hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHh-C-CCceeCCCCCCCchhHH
Q 020548 139 PA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 139 ~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~~~~~~~~~ 214 (324)
++ ++++.+............+.+.+.++..++.. ..++....+++.++++.+.+.|++ . +..+..|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------- 323 (392)
T 3b1d_A 253 ENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ--------- 323 (392)
Confidence 64 58888876655211112233444333333332 233455566678888889888887 4 33333222
Q ss_pred HHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 215 LKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
++.++|++++. ..+...+.+.+.
T Consensus 324 ----------~~~~~~i~~~~~~~~~~~l~~~l~ 347 (392)
T 3b1d_A 324 ----------GTYLIWLDFSDYGLTDDALFTLLH 347 (392)
Confidence 34455678763 134555666653
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=187.87 Aligned_cols=221 Identities=13% Similarity=0.112 Sum_probs=149.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-CceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~v~~~~~~np 75 (324)
+|+..++.++++ |+|++++++|+++ ... ..... .|.++..++. .|++++++++ ++ ++++|++++++||
T Consensus 63 ~a~~~~~~~~~~--d~vl~~~~~~~~~-~~~-~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~np 136 (353)
T 2yrr_A 63 LGMEAGLANLDR--GPVLVLVNGAFSQ-RVA-EMAAL-HGLDPEVLDFPPGEPVDPEAVARAL-KRRRYRMVALVHGETS 136 (353)
T ss_dssp HHHHHHHHTCSC--CCEEEEECSHHHH-HHH-HHHHH-TTCCEEEEECCTTSCCCHHHHHHHH-HHSCCSEEEEESEETT
T ss_pred HHHHHHHHHhcC--CcEEEEcCCCchH-HHH-HHHHH-cCCceEEEeCCCCCCCCHHHHHHHH-HhCCCCEEEEEccCCC
Confidence 467778887766 8999999999986 211 11122 6788877775 3899999999 55 8999999999999
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcCC--CCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHHHHHH----
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVNSMMD---- 148 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~~l~~---- 148 (324)
||.+.|+++|.++|+++|+++|+|++|+... .+....+.|+++.|++|++++ +| + ||++.++++++.+..
T Consensus 137 tG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g--~-G~~~~~~~~~~~l~~~~~~ 213 (353)
T 2yrr_A 137 TGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPG--L-APIAASLEARKAFTGKRGW 213 (353)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSS--C-EEEEECHHHHHHCCCCSCS
T ss_pred cceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCc--e-EEEEECHHHHHHhccCCCc
Confidence 9999999999999999999999999983211 111223689999999997655 44 4 999999988876641
Q ss_pred ------hhhhh-hhccCCCCCHHHHHH---HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 149 ------LHQGA-LMLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 149 ------~~~~~-~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
..... .....+++....... .+... ..++...+++.++++++.+.|++.+.++..|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------- 282 (353)
T 2yrr_A 214 YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKA----------- 282 (353)
T ss_dssp TTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSS-----------
T ss_pred cccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCc-----------
Confidence 00000 011122333322221 22211 12456677789999999999998866554322
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
...++++++.++...+..++.+.+..
T Consensus 283 ------~~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (353)
T 2yrr_A 283 ------SPLPTVLVVRPPEGVDADRLVRALYA 308 (353)
T ss_dssp ------SBCTTEEEEECCTTCCHHHHHHHHHH
T ss_pred ------cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 01456778988632335567776664
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-24 Score=191.07 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=136.5
Q ss_pred chHHHHHH--HccCCC-----CEEEEcCCCchhHHHHHhhhcCccccee-EEEecC---C----CHHHHHHhhhc--CCc
Q 020548 2 SAISSVLM--QLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNIT-TTFVDI---S----DHEMVNSAIVQ--GRT 64 (324)
Q Consensus 2 ~ai~~~~~--~~~~~g-----d~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~~~---~----d~~~l~~~l~~--~~~ 64 (324)
+|+..+++ .++++| |+|+++.|+|+++...++ ..|.+ +..++. + |++++++++.+ .++
T Consensus 110 ~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 184 (412)
T 1ajs_A 110 GALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-----TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFS 184 (412)
T ss_dssp HHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-----HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-----HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCc
Confidence 46666643 456799 999999999999988774 25777 766665 2 79999998843 367
Q ss_pred eEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccC-----CCCcEEEeCCccccccCC
Q 020548 65 KVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PAR-----LGADVVVHSISKFISGGA 129 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~-----~~~d~~~~S~sK~~~~~g 129 (324)
+++++++|+||||.+.+ +++|+++|+++|+++|+||+|.++... +.. .+.++++.|+||.++++|
T Consensus 185 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 264 (412)
T 1ajs_A 185 IFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN 264 (412)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC
Confidence 88889999999999965 568999999999999999999766442 111 245699999999999999
Q ss_pred CeeEEEEEc---ChhHH----HHHHHhhhhhhhcc-CCCCCHHHHHHHhcCcc-------cHHHHHHHHHHHHHHHHHHH
Q 020548 130 DIIAGAVCG---PANLV----NSMMDLHQGALMLL-GPTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 130 ~r~~G~i~~---~~~~~----~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L 194 (324)
.|+ ||+++ +++++ +.+..... . ... .+.+.+.++..++.... .++...+++.++++++.+.|
T Consensus 265 ~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 341 (412)
T 1ajs_A 265 ERV-GNLTVVAKEPDSILRVLSQMQKIVR-V-TWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARL 341 (412)
T ss_dssp GCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cce-EEEEEecCCHHHHHHHHHHHHHHHh-c-ccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 99988 77744 43433222 1 122 23333444433444332 34556677789999999999
Q ss_pred HhCC
Q 020548 195 KKLG 198 (324)
Q Consensus 195 ~~~~ 198 (324)
++.+
T Consensus 342 ~~~~ 345 (412)
T 1ajs_A 342 EALK 345 (412)
T ss_dssp HHTT
T ss_pred HhhC
Confidence 9876
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=195.89 Aligned_cols=267 Identities=13% Similarity=0.109 Sum_probs=176.5
Q ss_pred chHHHHHHHccCCCCE---EEEcCCCchhHHHHHhhhcCcccceeE-----EEecCC-----CHHHHHHhhhc--CCceE
Q 020548 2 SAISSVLMQLCSSGGH---VVAARTLYGGTHALLTHFFPRACNITT-----TFVDIS-----DHEMVNSAIVQ--GRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~---vl~~~p~y~~~~~~~~~~~~~~~g~~~-----~~~~~~-----d~~~l~~~l~~--~~~~~ 66 (324)
++++.++.+++++||+ |+++.|+|++....+...... .|.++ ...+.+ |++++++++.+ +++++
T Consensus 139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~-~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~l 217 (465)
T 3e9k_A 139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAV 217 (465)
T ss_dssp HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHH-TTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHH-cCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEE
Confidence 4788888888876655 999999999977655433323 56553 222222 79999999942 68999
Q ss_pred EEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcC--CCCccCCCCcEEEeCCccccc-cCCCeeEEEEEcChhHH
Q 020548 67 LYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLV 143 (324)
Q Consensus 67 v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~-~~g~r~~G~i~~~~~~~ 143 (324)
|++++++||||.+.|+++|.++|+++|+++|+|++++.. ..+..+.++|++++|+||+++ +|+ ++ |+++.++++.
T Consensus 218 v~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~-~~-g~l~~~~~~~ 295 (465)
T 3e9k_A 218 ILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAG-GI-AGAFIHEKHA 295 (465)
T ss_dssp EEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTT-CC-CEEEECGGGT
T ss_pred EEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCC-ce-EEEEEcHHHH
Confidence 999999999999999999999999999999999998322 222234589999999999994 443 54 8888888776
Q ss_pred HHHHHhhhhh---------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhC
Q 020548 144 NSMMDLHQGA---------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 144 ~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+.+.+...++ ..+..+++.......+...+. .++...++..++++++.+.|++.
T Consensus 296 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 296 HTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp TTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6554221110 001112333333322222222 14556667788899999999883
Q ss_pred -----------CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCcccee
Q 020548 198 -----------GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 198 -----------~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
+.++..|.. ...+|++++|.++. ....+.+.+.. .|+.. .
T Consensus 376 ~~~~~~~~~~~g~~~~~p~~---------------~~~~g~~~~~~~~~--~~~~l~~~L~~---~Gi~v-~-------- 426 (465)
T 3e9k_A 376 YGKDKAATKKPVVNIITPSH---------------VEERGCQLTITFSV--PNKDVFQELEK---RGVVC-D-------- 426 (465)
T ss_dssp CC---------CEEECSCSS---------------GGGBCSCEEEEECC--TTCCHHHHHHT---TTEEC-E--------
T ss_pred ccccccccCCCCeEEeCCCC---------------HhhcccEEEEEecC--CHHHHHHHHHH---CCEEE-e--------
Confidence 445554431 11357899999872 23445555553 23311 1
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhhhhcC
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQDSG 320 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~~~~~ 320 (324)
. ..++++|+|+ + ..+++++++.+.++|+++-++.
T Consensus 427 --~-----------------~~~~~iRis~~~-~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 427 --K-----------------RNPNGIRVAPVP-LYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp --E-----------------ETTTEEEEBCCT-TTCCHHHHHHHHHHHHHHHTC-
T ss_pred --c-----------------CCCCEEEEeCcc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 0 0147899999 7 7788888888888887775543
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=191.39 Aligned_cols=190 Identities=13% Similarity=0.106 Sum_probs=134.1
Q ss_pred chHHHH--HHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcC--CceEEEEe
Q 020548 2 SAISSV--LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQG--RTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~--~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~--~~~~v~~~ 70 (324)
+|+..+ +...+.+||+|+++.|+|+++...++ ..|.++..++. .|++++++++.+. .+.+++++
T Consensus 109 ~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 183 (412)
T 1yaa_A 109 GALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-----NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHS 183 (412)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-----TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEEC
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-----HcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 355655 23445799999999999999998874 26777777665 2799999998432 24455559
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-------cc-C----CC---CcEEEeCCccccccCCCee
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------PA-R----LG---ADVVVHSISKFISGGADII 132 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~-~----~~---~d~~~~S~sK~~~~~g~r~ 132 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++... +. . .. .+++++|+||.++++|.|+
T Consensus 184 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glri 263 (412)
T 1yaa_A 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV 263 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcc
Confidence 99999999975 667899999999999999999666432 11 1 13 5799999999999889997
Q ss_pred EEEEE--c-----Chh----HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc-------cHHHHHHHHHHHHHHHHHHH
Q 020548 133 AGAVC--G-----PAN----LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 133 ~G~i~--~-----~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L 194 (324)
||++ + +++ +++.+..... .....++.+.+.++..++.... +++...+++.++++.+.+.|
T Consensus 264 -G~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 341 (412)
T 1yaa_A 264 -GCFHLALTKQAQNKTIKPAVTSQLAKIIR-SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHL 341 (412)
T ss_dssp -EEEEEECCSCTTHHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEecCCCCCHHHHHHHHHHHHHHHh-hccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7 566 6666665332 1111112333333333444332 34556677788999999999
Q ss_pred HhCC
Q 020548 195 KKLG 198 (324)
Q Consensus 195 ~~~~ 198 (324)
++.+
T Consensus 342 ~~~~ 345 (412)
T 1yaa_A 342 VKLG 345 (412)
T ss_dssp HHHT
T ss_pred HhhC
Confidence 9875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-23 Score=183.14 Aligned_cols=264 Identities=12% Similarity=0.119 Sum_probs=170.8
Q ss_pred chHHHHHHHcc---CCCCEEEEc-CCCchhHH-HHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLC---SSGGHVVAA-RTLYGGTH-ALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~---~~gd~vl~~-~p~y~~~~-~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++++++ ++||+|++. .+.|+... ..++ . .|.++..++. .|++++++++.+.++++|+++
T Consensus 70 ~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 70 LGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR----S-YGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp HHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH----H-TTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred HHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH----H-cCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 57888888887 899999888 55666553 3332 2 6888888876 389999999933389999999
Q ss_pred cCCCCcccccChHHHHHHHHhc--CCEEEEcCCCCcC--CCCccCCCCcEEEeCCcccccc-CCCeeEEEEEcChhHHH-
Q 020548 71 SISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISG-GADIIAGAVCGPANLVN- 144 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~~~~--~~~~~~~~~d~~~~S~sK~~~~-~g~r~~G~i~~~~~~~~- 144 (324)
+++||||.+.|+++|.++|+++ |+++|+|++|+.. ..+....++|++++|+||++++ +| .|+++.++++++
T Consensus 145 ~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G---~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 145 HVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG---LSISLCSSRFMDY 221 (385)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC---EEEEEECHHHHHH
T ss_pred ccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCc---ceEEEEcHHHHHH
Confidence 9999999999999999999999 9999999998422 1233344789999999997764 44 399998888776
Q ss_pred HHHH---------------hh---hhhhh---ccCCCCCHHHHH---HHhcCcc--cHHHHHHHHHHHHHHHHHHH-HhC
Q 020548 145 SMMD---------------LH---QGALM---LLGPTMNPKVAF---ELSERIP--HLGLRMKEHCHRALIFARRM-KKL 197 (324)
Q Consensus 145 ~l~~---------------~~---~~~~~---~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~l~~~L-~~~ 197 (324)
.+.. .. ..... ....+....... ..+.... .++...+++.++++++.+.| ++.
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4421 10 00000 001223322221 1222211 24556677889999999999 877
Q ss_pred CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCC
Q 020548 198 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 277 (324)
Q Consensus 198 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 277 (324)
+.++..|. +.. ...++++++.+++ ...+.+.+.. .|+ .++.|.. .
T Consensus 302 g~~~~~~~-~~~-------------~~~~~~~~~~~~~---~~~~~~~l~~---~gi-~v~~g~~----------~---- 346 (385)
T 2bkw_A 302 QLTSVSRY-PSN-------------MSAHGLTAVYVAD---PPDVIAFLKS---HGV-VIAGGIH----------K---- 346 (385)
T ss_dssp CCEESSCS-SST-------------TBCSSCEEEECSC---HHHHHHHHHH---TTE-ECBCCCC----------T----
T ss_pred CceecccC-ccc-------------ccCCceEEEecCC---HHHHHHHHHH---CCe-EEeCCCC----------c----
Confidence 66554322 000 0146789999875 4566666653 333 2222211 0
Q ss_pred CHHHHHhcCCCCCeEEEE-eccC---CCHHHHHHHHHHHHHhhh
Q 020548 278 NAEEKALAGISAGLVRMS-VGYL---GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 278 ~~~~~~~~~~~~~~iR~s-~g~~---~~~~~~~~~l~~~l~~~~ 317 (324)
...++++|+| ++ . ..++++++.+.++|+++-
T Consensus 347 --------~~~~~~iRis~~~-~~~~~~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 347 --------DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp --------TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHHT
T ss_pred --------ccCCCEEEEEccc-cccccCCHHHHHHHHHHHHHHH
Confidence 1124789999 77 4 245556666666665543
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=191.15 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=134.0
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C----CHHHHHHhhhcC--CceEEEEe
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S----DHEMVNSAIVQG--RTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~--~~~~v~~~ 70 (324)
+|+..+++.+ +.+||+|+++.|+|+++...++ ..|.++..++. + |++++++++.+. ++++++++
T Consensus 105 ~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~ 179 (396)
T 2q7w_A 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-----SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHG 179 (396)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred hhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeC
Confidence 4667776654 4699999999999999988874 26777777766 3 899999998332 47888889
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++... +.. .+.+++++|+||.++++|.|+ ||+
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~ 258 (396)
T 2q7w_A 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERV-GAC 258 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccccccc-ceE
Confidence 99999999975 568999999999999999999766442 111 146799999999999889997 999
Q ss_pred Ec---Chh----HHHHHHHhhhhhhhccC-CCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 137 CG---PAN----LVNSMMDLHQGALMLLG-PTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 137 ~~---~~~----~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+. +++ +.+.+..... . ...+ +.+.+.++..++... ..++...+++.++++.+.+.|++.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 259 TLVAADSETVDRAFSQMKAAIR-A-NYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp EEECSSHHHHHHHHHHHHHHHH-T-TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCHHHHHHHHHHHHHHHh-h-ccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 85 554 4444433222 1 1222 222333333334332 2334455567889999999999876
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=189.41 Aligned_cols=139 Identities=20% Similarity=0.206 Sum_probs=112.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceE-EEEecCCCCcc-cc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV-LYFESISNPTL-AV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~-v~~~~~~nptG-~~ 79 (324)
+|+..++.++ +||+|+++.|+|+++...+. .... .|.++..+ .|+++++++ ++++++ |++++|+|||| ..
T Consensus 87 ~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~-~g~~~~~v--~d~~~l~~~--~~~~~~~v~~~~p~nptG~~~ 158 (374)
T 2aeu_A 87 SAILATILAL--KPKKVIHYLPELPGHPSIER-SCKI-VNAKYFES--DKVGEILNK--IDKDTLVIITGSTMDLKVIEL 158 (374)
T ss_dssp HHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHH-TTCEEEEE--SCHHHHHTT--CCTTEEEEEECBCTTSCBCCH
T ss_pred HHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHH-cCcEEEEe--CCHHHHHhc--CCCccEEEEEccCCCCCCCCc
Confidence 5778888876 99999999998877554332 1223 68888887 589999887 568999 99999999999 88
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCcCC----CC--ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSPLV----LS--PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~~~----~~--~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
.++++|.++|+++|+++|+|++|+.+. .. +...+.|++++|+||++++ .++ ||+++++++++.+.....
T Consensus 159 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g--~~~-G~~~~~~~~~~~l~~~~~ 233 (374)
T 2aeu_A 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG--PRG-GLLAGKKELVDKIYIEGT 233 (374)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS--CSC-EEEEEEHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC--cce-EEEEECHHHHHHHHHhhc
Confidence 899999999999999999999984432 11 3445789999999999754 574 999999999998887654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-24 Score=190.31 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=134.2
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---C----CHHHHHHhhhcC--CceEEEEe
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S----DHEMVNSAIVQG--RTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~--~~~~v~~~ 70 (324)
+|+..+++.+.. +||+|+++.|+|+++...++ ..|.++..++. + |++++++++.+. ++++++++
T Consensus 102 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 176 (394)
T 2ay1_A 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHG 176 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEES
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 467777766644 99999999999999988774 25677777665 2 899999998432 36778889
Q ss_pred cCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccC-----CCCcEEEeCCccccccCCCeeEEEE
Q 020548 71 SISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-----LGADVVVHSISKFISGGADIIAGAV 136 (324)
Q Consensus 71 ~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~-----~~~d~~~~S~sK~~~~~g~r~~G~i 136 (324)
+|+||||.+.+ +++|+++|+++|+++|+||+|+++... +.. .+.+++++|+||+++++|.|+ ||+
T Consensus 177 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~ 255 (394)
T 2ay1_A 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCL 255 (394)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCcc-ceE
Confidence 99999999975 568899999999999999999766442 111 135688999999999889997 999
Q ss_pred Ec---ChhHHHHHHHhhh-h-hhhccC-CCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 137 CG---PANLVNSMMDLHQ-G-ALMLLG-PTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 137 ~~---~~~~~~~l~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+. ++++++.+..... . ...+.+ +.+.+.++..++... ..++...+++.++++.+.+.|++.+
T Consensus 256 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (394)
T 2ay1_A 256 LALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87 6665544432111 0 011222 333333333344332 2345566677888999999998864
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-23 Score=183.13 Aligned_cols=282 Identities=16% Similarity=0.159 Sum_probs=184.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ |+|
T Consensus 64 ~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~n 134 (388)
T 1b9h_A 64 HALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDVDAATYNLDPEAVAAAV-TPRTKVIM---PVH 134 (388)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHcCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCcCCCCHHHHHHhc-CcCceEEE---EeC
Confidence 5788889988 8999999999999999988773 368888887753 899999999 77888888 899
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCC---ccCCCCcEEEeCCccccccCCCeeEEEEEcChh-H--HHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS---PARLGADVVVHSISKFISGGADIIAGAVCGPAN-L--VNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~---~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~--~~~l~ 147 (324)
|||.+.++++|.++|+++|+++|+|++|+. .... ...++ |+++.|+||..+.+|++ +|+++.+++ + ++.+.
T Consensus 135 ~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~ 212 (388)
T 1b9h_A 135 MAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAF 212 (388)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHH
T ss_pred CccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999953 3322 11223 67788877443333457 599988765 5 56665
Q ss_pred Hhhhhhh---------hccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHH
Q 020548 148 DLHQGAL---------MLLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 148 ~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~ 215 (324)
....+.. ...|. .+.+..++.+...++.++...+++.++++++.+.|++. +..+..+. +..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~------ 285 (388)
T 1b9h_A 213 LRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGD-VRA------ 285 (388)
T ss_dssp HHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCC-TTC------
T ss_pred HHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCC-cCC------
Confidence 4332100 01122 24555555444456667778888889999999999987 44443221 000
Q ss_pred HHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccc--cC---------CCCHHHH
Q 020548 216 KSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST--SS---------ELNAEEK 282 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~--~~---------~~~~~~~ 282 (324)
....++++++.+++. .+...+.+.|.. .|+ .++.+.. .....+.... .. ..+....
T Consensus 286 ------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (388)
T 1b9h_A 286 ------DRNSHYMAMFRIPGLTEERRNALVDRLVE---AGL-PAFAAFR-AIYRTDAFWELGAPDESVDAIARRCPNTDA 354 (388)
T ss_dssp ------CBCCCSEEEEECTTCCHHHHHHHHHHHHH---TTC-CEEECCC-CGGGSHHHHHSSCCSSCHHHHHHTCHHHHH
T ss_pred ------CccceEEEEEEeCCcCcccHHHHHHHHHH---CCC-CcccccC-ccccChHhHhcCCCcccccccccCCHHHHH
Confidence 002467899999742 356778777764 343 2222211 0000000000 00 0000000
Q ss_pred HhcCCCCCeEEEEeccCCC-HHHHHHHHHHHHHhhh
Q 020548 283 ALAGISAGLVRMSVGYLGT-LDQRWSQFEKALSRMQ 317 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~-~~~~~~~l~~~l~~~~ 317 (324)
...+.+|++++ ... ++++++.+.++|+++.
T Consensus 355 ----~~~~~l~l~~~-~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 355 ----ISSDCVWLHHR-VLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp ----HHHHEEEEEGG-GGGSCHHHHHHHHHHHHHHH
T ss_pred ----HHhCeEEecCC-CCCCCHHHHHHHHHHHHHHH
Confidence 01257999999 877 8888899988887764
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=187.60 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=167.2
Q ss_pred chHHHHHHH---cc---CCC-CEEEEcCCCchhHHHHHhhhcCcc---cce-----eEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQ---LC---SSG-GHVVAARTLYGGTHALLTHFFPRA---CNI-----TTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~---~~---~~g-d~vl~~~p~y~~~~~~~~~~~~~~---~g~-----~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++.+ ++ +|| |+|++++|+|+++...+....... .+. .+..++..|++++++++ ++++++
T Consensus 97 ~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~ 175 (375)
T 2eh6_A 97 ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL-DEETAG 175 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTC-CTTEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHh-cCCeEE
Confidence 456666653 35 788 999999999988765443221110 011 15566667999999999 778999
Q ss_pred EEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCC--CcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~--~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++||||.+.+ +++|.++|+++|+++|+||+|+++...+ ...+ .|++ |+||++++ |.|+ |+
T Consensus 176 v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~~-g~~~-G~ 251 (375)
T 2eh6_A 176 IIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLGG-GVPI-GA 251 (375)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSCC-EE
T ss_pred EEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccccC-CCCe-EE
Confidence 999999999999987 9999999999999999999997654322 1224 7777 56799985 8997 99
Q ss_pred EEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 136 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
++.++++++.+.....+ ...+ ........+...++......++..++++++.+.|++.+.... +
T Consensus 252 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~----------- 315 (375)
T 2eh6_A 252 ILAREEVAQSFTPGSHG--STFG--GNPLACRAGTVVVDEVEKLLPHVREVGNYFKEKLKELGKGKV-K----------- 315 (375)
T ss_dssp EEEEHHHHTTCCTTSCC--CSST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-E-----------
T ss_pred EEEcHHHHhhhcCCCCC--CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-e-----------
Confidence 99888877766542221 0122 233332222222333335566678889999999998764221 2
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
+.|.++++.++. ....+.+.+.. .|+.. .|. .++++|+|
T Consensus 316 --------~~g~~~~~~~~~--~~~~~~~~l~~---~gi~~-----------~~~-----------------~~~~iRi~ 354 (375)
T 2eh6_A 316 --------GRGLMLGLELER--ECKDYVLKALE---KGLLI-----------NCT-----------------AGKVLRFL 354 (375)
T ss_dssp --------EETTEEEEECSS--CCHHHHHHHHH---TTEEC-----------EEE-----------------TTTEEEEC
T ss_pred --------EEEEEEEEEEcC--cHHHHHHHHHH---CCCEE-----------ecC-----------------CCCEEEEE
Confidence 257789999863 13455555553 23211 111 14789999
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q 020548 296 VGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~ 315 (324)
++ ...+++.++.+.++|++
T Consensus 355 ~~-~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 355 PP-LIIQKEHIDRAISVLRE 373 (375)
T ss_dssp CC-TTCCHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHH
Confidence 98 77777777777777654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=187.99 Aligned_cols=254 Identities=11% Similarity=0.094 Sum_probs=168.9
Q ss_pred chHHHHHHHccCC----------CCEEEEcCCCchhHHHHHhhhcCc---c-----cceeEEEecCCCHHHHHHhhhcCC
Q 020548 2 SAISSVLMQLCSS----------GGHVVAARTLYGGTHALLTHFFPR---A-----CNITTTFVDISDHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~----------gd~vl~~~p~y~~~~~~~~~~~~~---~-----~g~~~~~~~~~d~~~l~~~l~~~~ 63 (324)
+|+..++..+..+ +|+|++..|+|++........... . ....+..++.+|++++++++ +++
T Consensus 104 ~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~ 182 (392)
T 3ruy_A 104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI-TPN 182 (392)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHC-CTT
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHh-ccC
Confidence 4666677665443 689999999997665444221110 0 01135566667999999999 789
Q ss_pred ceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCccccccCC-Ce
Q 020548 64 TKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFISGGA-DI 131 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~~~~g-~r 131 (324)
+++|++++++||||.+.| +++|+++|+++|+++|+||+|+++... . .....|++ |+||.+++ | .|
T Consensus 183 ~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--~~SK~l~g-G~~~ 259 (392)
T 3ruy_A 183 TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMY--ILGKALGG-GVFP 259 (392)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSC
T ss_pred eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEE--EEchhhhC-Chhh
Confidence 999999999999999998 999999999999999999999665321 1 12345776 46799876 6 89
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCc-eeCCCCCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLK-VLYPGLED 208 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~-~~~p~~~~ 208 (324)
+ ||+++++++++.+..... ....+.+...++.+...++.+ +...+++.++++++.+.|++.+.. +...
T Consensus 260 ~-G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---- 330 (392)
T 3ruy_A 260 I-SCAAANRDILGVFEPGSH----GSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEV---- 330 (392)
T ss_dssp C-EEEEECHHHHTTCCTTSS----CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEE----
T ss_pred h-EEEEECHHHHhhhccCCc----CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEE----
Confidence 6 999999988877655433 222233333333322222222 345566788999999999887531 1100
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
.+.|+++++.++. +...+.+.+.. .|+ . +.|+ .
T Consensus 331 --------------~~~g~~~~~~~~~--~~~~l~~~l~~---~gi-~----------v~~~-----------------~ 363 (392)
T 3ruy_A 331 --------------RGKGLFIGIELNE--PARPYCEQLKA---AGL-L----------CKET-----------------H 363 (392)
T ss_dssp --------------EEETTEEEEEESS--CSHHHHHHHHT---TTE-E----------CCCB-----------------T
T ss_pred --------------EeeeeEEEEEEcc--hHHHHHHHHHH---CCc-E----------EecC-----------------C
Confidence 0247788888874 35566666663 333 1 1111 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++++|+|++ ...++++++.+.++|+.+
T Consensus 364 ~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 364 ENVIRIAPP-LVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 478999988 777777777777766554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=185.65 Aligned_cols=259 Identities=15% Similarity=0.117 Sum_probs=169.3
Q ss_pred chHHHHHHHcc------CCCCE-EEEcCCCchhHHHHHhhhcCccc--ceeEEEecCCCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC------SSGGH-VVAARTLYGGTHALLTHFFPRAC--NITTTFVDISDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~------~~gd~-vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+++..++.+++ ++||+ |+++.++|+++...+..+... . |.++..++. ++++++++ ++++++|+++++
T Consensus 99 ~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~~~l~~~i-~~~~~~v~~~~~ 174 (416)
T 1qz9_A 99 INLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADM-LQQGYTLRLVDS--PEELPQAI-DQDTAVVMLTHV 174 (416)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHH-HCSSCEEEEESS--GGGHHHHC-STTEEEEEEESB
T ss_pred HHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHH-hcCCceEEEeCc--HHHHHHHh-CCCceEEEEecc
Confidence 35666677665 89997 555567888766654322211 3 888888876 88899988 778999999999
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CC-CCccCCCCcEEEeCCccccccCCCeeE-EEEEcChhHHHHHHHh
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-LSPARLGADVVVHSISKFISGGADIIA-GAVCGPANLVNSMMDL 149 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~-~~~~~~~~d~~~~S~sK~~~~~g~r~~-G~i~~~~~~~~~l~~~ 149 (324)
+||||.+.|+++|.++|+++|+++|+|++|+. .. .+....++|++++|+||++++ |.+ + |+++.++++++.+...
T Consensus 175 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~-g~~-~~g~l~~~~~~~~~l~~~ 252 (416)
T 1qz9_A 175 NYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG-GPG-SQAFVWVSPQLCDLVPQP 252 (416)
T ss_dssp CTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCC-CTT-CCCEEEECTTTTTTSCCS
T ss_pred ccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCC-CCC-CeEEEEECHHHHhccCCC
Confidence 99999999999999999999999999999842 11 121233689999999999743 233 4 9998888877665442
Q ss_pred hhhh-------------------hhccCCCCCHHHHH---HHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC----CCce
Q 020548 150 HQGA-------------------LMLLGPTMNPKVAF---ELSERI--PHLGLRMKEHCHRALIFARRMKKL----GLKV 201 (324)
Q Consensus 150 ~~~~-------------------~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~----~~~~ 201 (324)
..++ .....+++...... .++... ..++...+++.++++++.+.|++. +..+
T Consensus 253 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~ 332 (416)
T 1qz9_A 253 LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL 332 (416)
T ss_dssp CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 1110 01112223322211 122222 346677788899999999999886 5555
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHH
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 281 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 281 (324)
..|.- . ...++++++.+++ ...+.+.+.. .|+.. .+
T Consensus 333 ~~~~~---~------------~~~~~~~~~~~~~---~~~l~~~l~~---~gi~~-----------~~------------ 368 (416)
T 1qz9_A 333 VTPRE---H------------AKRGSHVSFEHPE---GYAVIQALID---RGVIG-----------DY------------ 368 (416)
T ss_dssp CSCSS---G------------GGBCSEEEEECTT---HHHHHHHHHT---TTEEC-----------EE------------
T ss_pred eCCCC---H------------HHcCCEEEEecCC---HHHHHHHHHh---CCcEe-----------cc------------
Confidence 43320 0 0135688999875 4456666653 23311 00
Q ss_pred HHhcCCCCCeEEEEeccC-CCHHHHHHHHHHHHHhh
Q 020548 282 KALAGISAGLVRMSVGYL-GTLDQRWSQFEKALSRM 316 (324)
Q Consensus 282 ~~~~~~~~~~iR~s~g~~-~~~~~~~~~l~~~l~~~ 316 (324)
..++.+|+|++ . ..++++++.+.++|+.+
T Consensus 369 -----~~~~~lRis~~-~~~~t~~~i~~~~~~l~~~ 398 (416)
T 1qz9_A 369 -----REPRIMRFGFT-PLYTTFTEVWDAVQILGEI 398 (416)
T ss_dssp -----ETTTEEEEECC-TTTCCHHHHHHHHHHHHHH
T ss_pred -----CCCCeEEEeCc-ccCCCHHHHHHHHHHHHHH
Confidence 02478999997 4 55666666666666554
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=179.25 Aligned_cols=285 Identities=15% Similarity=0.182 Sum_probs=184.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++.++ +++||+|+++.|+|+++...++ ..|.++.+++.+ |++++++++ ++++++|+ |+||
T Consensus 64 ~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~---~~n~ 134 (374)
T 3uwc_A 64 DALAMSFKMLNIGAGDEVITCANTFIASVGAIV-----QAGATPVLVDSENGYVIDPEKIEAAI-TDKTKAIM---PVHY 134 (374)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTSSBCGGGTGGGC-CTTEEEEC---CBCG
T ss_pred HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCCCcCHHHHHHhC-CCCceEEE---EeCC
Confidence 4788888988 8999999999999999988773 378888888875 899999999 77888888 8899
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCccCC--CCcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHHh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARL--GADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDL 149 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~~~~--~~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~~ 149 (324)
||.+.++++|.++|+++|+++|+|++|+.. ..+.... ..|+++.|+| |+++++|. +|+++.+ +++.+.+...
T Consensus 135 ~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~ 212 (374)
T 3uwc_A 135 TGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLY 212 (374)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999432 2222222 3799999977 99977444 4888754 5677777765
Q ss_pred hhhhhh--------ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 150 HQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 150 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
..+... .....+....++........++...++..++++++.+.|++.+..+..|..+....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---------- 282 (374)
T 3uwc_A 213 RNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVY---------- 282 (374)
T ss_dssp TBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEE----------
T ss_pred HhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCc----------
Confidence 431100 01122455555555445566777777788888999999988752122232111000
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC----CCCHHHHHhcCCCCCeEEEEec
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS----ELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iR~s~g 297 (324)
..-..+.+..++ ...+.+.+.. .|+ .++.+........|...... ..+... ....+.+|++++
T Consensus 283 --~~~~~~~~~~~~---~~~l~~~L~~---~gi-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lrl~~~ 349 (374)
T 3uwc_A 283 --HVFHIYVLRVKY---RDQLFQYLKD---NGI-EVKIHYPIAMHLQPAAKSLGYQQGDFPMAE----KHGEAVITLPAH 349 (374)
T ss_dssp --CCCSSEEEEETT---HHHHHHHHHH---TTB-CCBCSCSSCGGGSGGGGGGCCCTTSCHHHH----HHHHHEEEECCC
T ss_pred --eeeEEEEEEcCC---HHHHHHHHHH---CCC-ccccCCCCccccChhhhhcCCccCCCccHH----HHHhCEEEccCC
Confidence 001123444443 4455565553 333 22333211111111110000 000000 011368999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCC
Q 020548 298 YLGTLDQRWSQFEKALSRMQDSGV 321 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~~~~~~ 321 (324)
...++++++.+.++|+++-++.+
T Consensus 350 -~~~t~edi~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 350 -PYLTEEEINYIIKKVREFYLEKH 372 (374)
T ss_dssp -TTSCHHHHHHHHHHHHHHHHTTT
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999988765544
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=182.27 Aligned_cols=280 Identities=16% Similarity=0.185 Sum_probs=180.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ ++|
T Consensus 62 ~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~---~~n 132 (373)
T 3frk_A 62 DALHLILKGYDIGFGDEVIVPSNTFIATALAVS-----YTGAKPIFVEPDIRTYNIDPSLIESAI-TEKTKAII---AVH 132 (373)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-----HHSCEEEEECEETTTTEECGGGTGGGC-CTTEEEEE---EEC
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEeccccccCcCHHHHHHhc-CCCCeEEE---EEC
Confidence 4788889988 8999999999999999988874 368888887754 899999999 77899888 678
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCC--CcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~--~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
|||...|+++|.++|+++|+++|+|++|+. ...+....+ .|+++.|++ |+++++| + +|+++.+ +++.+.+..
T Consensus 133 ~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-~-gg~~~~~~~~~~~~~~~ 210 (373)
T 3frk_A 133 LYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLG-D-GGAVVTNDKDLAEKIKA 210 (373)
T ss_dssp CTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS-S-CEEEEESCHHHHHHHHH
T ss_pred CCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccc-e-eEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999843 333333334 799999976 9997633 3 4888765 567777776
Q ss_pred hhhhhhh------c--cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 149 LHQGALM------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
...+... . ....+....++.....+..++...++..++++++.+.|++.+ +..|..+....
T Consensus 211 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~--------- 279 (373)
T 3frk_A 211 LSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN--VIIPVEADYAK--------- 279 (373)
T ss_dssp HHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEE---------
T ss_pred HHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCc---------
Confidence 5542100 0 112245555555444455566667777888888888888776 33333211100
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC----CCCHHHHHhcCCCCCeEEEEe
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS----ELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iR~s~ 296 (324)
.....+.+..++ ...+.+.|.. .|+ .++.+......+.|...... ..+.... ...+.+|+|+
T Consensus 280 ---~~~~~~~~~~~~---~~~l~~~L~~---~gI-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lrl~~ 345 (373)
T 3frk_A 280 ---HVWYTFVIRSEK---RDELQKYLNN---NGI-GTLIHYPIPIHLQQAYKDLGFKTGNFPIAEK----IANEILSIPI 345 (373)
T ss_dssp ---CCCSSEEEEESS---HHHHHHHHHH---TTB-CCBCSCSSCGGGSGGGGGGCCCTTSSHHHHH----HHHHEEEECC
T ss_pred ---eeeEEEEEEeCC---HHHHHHHHHH---CCC-CcccCcCCccccChHHHhcCCCCCCCHHHHH----HHhCEEEccC
Confidence 011234455543 4455555553 233 22322111111111110000 0000000 1136899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhh
Q 020548 297 GYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+ ..+++++++.+.++|++...
T Consensus 346 ~-~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 346 W-YGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp C-TTCCHHHHHHHHHHHHTCC-
T ss_pred C-CCCCHHHHHHHHHHHHHHhh
Confidence 9 99999999999999987753
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=178.21 Aligned_cols=279 Identities=16% Similarity=0.181 Sum_probs=185.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ |+|
T Consensus 61 ~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~~ 131 (367)
T 3nyt_A 61 DALQIVQMALGVGPGDEVITPGFTYVATAETVA-----LLGAKPVYVDIDPRTYNLDPQLLEAAI-TPRTKAII---PVS 131 (367)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCGGGTGGGC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCccCCcCHHHHHHhc-CcCCcEEE---eeC
Confidence 4788888888 8999999999999999988874 368888888764 889999999 88999988 788
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCC--cEEEeCC--ccccccCCCeeEEEEEc-ChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~--d~~~~S~--sK~~~~~g~r~~G~i~~-~~~~~~~l~~ 148 (324)
|+|...++++|.++|+++|+++|+|++|+ +...+....+. |+++.|| +|+++++|. +|+++. ++++.+.+..
T Consensus 132 ~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~ 209 (367)
T 3nyt_A 132 LYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQ 209 (367)
T ss_dssp GGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHH
T ss_pred CccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999984 33333333333 9999997 899987554 488876 5778888877
Q ss_pred hhhhhhh--------ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 149 LHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
...+... .....+....++..+..+..++...++..++++++.+.|++.+..+. ..+....
T Consensus 210 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~--~~~~~~~--------- 278 (367)
T 3nyt_A 210 IARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVGIGTP--FIEVNNI--------- 278 (367)
T ss_dssp HTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCC--CCCTTEE---------
T ss_pred HHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeecc--CCCCCCc---------
Confidence 5541100 01234566666665555666777777888889999999999865322 1110000
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccc-ccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS-TSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
....++.+.+++ ...+.+.|.. .|+ .++.+........|... ....++.... ...+.+|++++ .
T Consensus 279 ---~~~~~~~~~~~~---~~~l~~~L~~---~GI-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~lp~~-~ 343 (367)
T 3nyt_A 279 ---SVYAQYTVRMDN---RESVQASLKA---AGV-PTAVHYPIPLNKQPAVADEKAKLPVGDK----AATQVMSLPMH-P 343 (367)
T ss_dssp ---CCCSSEEEECSS---HHHHHHHHHH---HTC-CCBCSCSSCGGGSGGGCCTTCCCHHHHH----HHHHEEEECCC-T
T ss_pred ---eeeEEEEEEeCC---HHHHHHHHHH---CCC-ceeccCCCccccChhhhccCCCChHHHH----HHhCeEEccCC-C
Confidence 122345666654 3455555553 333 22222111111111110 0001111111 12468999999 9
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 020548 300 GTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~ 317 (324)
..++++++.+.+++.+..
T Consensus 344 ~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 344 YLDTASIKIICAALTNLE 361 (367)
T ss_dssp TCCHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887664
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=179.80 Aligned_cols=282 Identities=17% Similarity=0.199 Sum_probs=186.3
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|+++ |
T Consensus 65 ~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~---~ 135 (393)
T 1mdo_A 65 AGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVDRDTLMVTPEHIEAAI-TPQTKAIIPV---H 135 (393)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEECCB---C
T ss_pred HHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-----HCCCEEEEEeccCCcCCCCHHHHHHhc-CCCceEEEEe---C
Confidence 5788899998 8999999999999999988774 368888887642 799999999 7789999875 5
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCC-CcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG-ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~-~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~~ 149 (324)
|+|.+.++++|.++|+++|+++|+|++|+. ........+ .|++++|+| |++++ ++ +|+++.+ +++.+.+...
T Consensus 136 ~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~--~~-~g~~~~~~~~~~~~l~~~ 212 (393)
T 1mdo_A 136 YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITC--AE-GGIVVTDNPQFADKLRSL 212 (393)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCS--SS-CEEEEESCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCcccc--cc-ceEEEeCCHHHHHHHHHH
Confidence 899999999999999999999999999953 333222345 899999999 87754 47 4999886 7888888765
Q ss_pred hhhhh--------------hc----cC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeC-CCCCC
Q 020548 150 HQGAL--------------ML----LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY-PGLED 208 (324)
Q Consensus 150 ~~~~~--------------~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-p~~~~ 208 (324)
..... .. .| ..+....++.....+..++...++..++++++.+.|++.+.++.. |.. .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~ 291 (393)
T 1mdo_A 213 KFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSW-E 291 (393)
T ss_dssp TBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSS-C
T ss_pred HhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCC-C
Confidence 43110 00 01 123455544444444556666777778899999999987754321 210 0
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCC---HHHHHHHHHHhhccccccccccccCCccceeccccccc---cCCCCHHHH
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST---SSELNAEEK 282 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~ 282 (324)
. .+.+.++++.+++ ..+...+.+.+.. .|+ .++.|..... ..+.... ....+...
T Consensus 292 ~-------------~~~~~~~~v~~~~~~~~~~~~~l~~~l~~---~gi-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~- 352 (393)
T 1mdo_A 292 H-------------IHAWHLFIIRVDEARCGITRDALMASLKT---KGI-GTGLHFRAAH-TQKYYRERFPTLTLPDTE- 352 (393)
T ss_dssp E-------------ECCCSCEEEECCHHHHSSCHHHHHHHHHH---TTB-CCBCCCCCGG-GSHHHHHHSTTCCCHHHH-
T ss_pred C-------------CceeEEEEEEecccccccCHHHHHHHHHh---CCC-CcccccCccc-cChhhhccCCccCChhHH-
Confidence 0 0245578999862 1235567777664 343 3333321100 0000000 00000000
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
.+..+.+|++++ ...++++++.+.++|+++-+.
T Consensus 353 ---~~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 353 ---WNSERICSLPLF-PDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp ---HHHTTEEEECCC-TTCCHHHHHHHHHHHHHHHC-
T ss_pred ---HHHhCEEEecCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 001368999999 888888899999888877543
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=186.29 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=149.4
Q ss_pred chHHHHHHHccC-------CC-CEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~-------~g-d~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~~~ 65 (324)
+|+..++++++. +| |+|++.+|+|+++.......... ..+..+..++.+|++++++++ +++++
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~ 185 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI-DDSTC 185 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC-STTEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh-cCCeE
Confidence 467777777654 66 99999999999875444322110 012456677777999999999 78999
Q ss_pred EEEEecCCCCccccc-----ChHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeE
Q 020548 66 VLYFESISNPTLAVA-----NIPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 66 ~v~~~~~~nptG~~~-----~~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+|+++ |+||+|.+. ++++|+++|+++|+++|+||+|+++.... .....|++ |+||.++ +|.|+
T Consensus 186 ~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~- 260 (406)
T 4adb_A 186 AVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPV- 260 (406)
T ss_dssp EEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-
T ss_pred EEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCe-
Confidence 99999 899999764 58899999999999999999997664321 12346776 5799998 68997
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
||+++++++++.+.....+ .+..++.+.+.++...+..... +...+++.++++++.+.|++.+.......
T Consensus 261 G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------- 330 (406)
T 4adb_A 261 GALLATEECARVMTVGTHG-TTYGGNPLASAVAGKVLELINT-PEMLNGVKQRHDWFVERLNTINHRYGLFS-------- 330 (406)
T ss_dssp EEEEECHHHHHTCCTTSSC-CSSTTCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCEE--------
T ss_pred EEEEEcHHHHhhhccCCcC-CCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCce--------
Confidence 9999999988877654331 1122222222222222222222 45667778888889888887532110000
Q ss_pred HHHHHhccCCCcceEEEEEeCCHH--HHHHHHHHhhc
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQN 248 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~~~l~~ 248 (324)
...+.|.++++.++... ....+.+.+..
T Consensus 331 -------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 360 (406)
T 4adb_A 331 -------EVRGLGLLIGCVLNADYAGQAKQISQEAAK 360 (406)
T ss_dssp -------EEEEETTEEEEEECTTTTTCHHHHHHHHHH
T ss_pred -------EEEEEEEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 01135779999997521 45667777664
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=176.57 Aligned_cols=185 Identities=22% Similarity=0.185 Sum_probs=139.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..+++++ +++||+|+++.|+|+++...++ ..|.++..++.+ |++++++++ ++++++|+ ++|
T Consensus 89 ~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~n 159 (399)
T 2oga_A 89 DALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-----ATGATPVPVEPHEDHPTLDPLLVEKAI-TPRTRALL---PVH 159 (399)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCSSSSSBCHHHHHHHC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HCCCEEEEEecCCCCCCcCHHHHHHhc-CCCCeEEE---EeC
Confidence 4788888888 8999999999999999888774 267888777642 799999999 77888888 578
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCccCCC--CcEEEeCC--ccccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI--SKFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~~~~~--~d~~~~S~--sK~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
|||.+.++++|.++|+++|+++|+|++|+.+ ..+....+ .|++++|+ +|+++++| +. |+++.+ +++.+.+..
T Consensus 160 ~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G-~~-g~~~~~~~~~~~~l~~ 237 (399)
T 2oga_A 160 LYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG-DG-GAVVTGDPELAERLRM 237 (399)
T ss_dssp GGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS-CC-EEEEESCHHHHHHHHH
T ss_pred CcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC-ce-EEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999533 22222233 69999999 69998877 84 998875 888888876
Q ss_pred hhhhhhh--------ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 149 LHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 149 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
....... .....+....++.+...++.++...++..++++++.+.|++.
T Consensus 238 ~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 294 (399)
T 2oga_A 238 LRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGL 294 (399)
T ss_dssp HHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5441100 011234555555544455556666666777888888888876
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=178.59 Aligned_cols=279 Identities=14% Similarity=0.178 Sum_probs=183.8
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+ ++|
T Consensus 82 ~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~---~~n 152 (391)
T 3dr4_A 82 TALHLALVAMGIGPGDEVIVPSLTYIASANSVT-----YCGATPVLVDNDPRTFNLDAAKLEALI-TPRTKAIM---PVH 152 (391)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCGGGSGGGC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-----HCCCEEEEEecCccccCcCHHHHHHhc-CCCceEEE---EEC
Confidence 4788888888 8999999999999999988874 368888888765 789999998 77899888 568
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCccCC--CCcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARL--GADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~--~~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~~ 148 (324)
|||...|+++|.++|+++|+++|+|++|+. ........ -.|+++.|++ |++++ ++ +|+++.+ +++.+.+..
T Consensus 153 ~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~--g~-gg~~~~~~~~~~~~~~~ 229 (391)
T 3dr4_A 153 LYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT--GE-GGMITTNDDDLAAKMRL 229 (391)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC--BS-CEEEEESCHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc--CC-eEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999843 33222222 2478888865 88855 45 4888655 567777776
Q ss_pred hhhhhhh--------c--cCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCC--CCCCCchhHHHH
Q 020548 149 LHQGALM--------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP--GLEDHPHHELLK 216 (324)
Q Consensus 149 ~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p--~~~~~~~~~~~~ 216 (324)
...+... . ....+....++..+.....++...++..++++++.+.|++.+..+..+ ...
T Consensus 230 ~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--------- 300 (391)
T 3dr4_A 230 LRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALT--------- 300 (391)
T ss_dssp HHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTT---------
T ss_pred HHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCC---------
Confidence 5531100 0 012345555554444455666777778888999999999886655433 100
Q ss_pred HHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccc--cCCCCHHHHHhcCCCCCeE
Q 020548 217 SMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST--SSELNAEEKALAGISAGLV 292 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i 292 (324)
......++++.+++ ..+...+.+.+.. .|+ .++.|.. .+.+.|.... ....+.... ...+.+
T Consensus 301 -----~~~~~~~~~i~~~~~~~~~~~~l~~~L~~---~GI-~v~~~~~-p~~~~~~~~~~~~~~~~~~~~----~~~~~l 366 (391)
T 3dr4_A 301 -----GRHVFWMYTVRLGEGLSTTRDQVIKDLDA---LGI-ESRPVFH-PMHIMPPYAHLATDDLKIAEA----CGVDGL 366 (391)
T ss_dssp -----SCCCCSSEEEEECSSCSSCHHHHHHHHHH---TTC-CCEECCC-CGGGSGGGGGGCCTTCHHHHH----HHHHEE
T ss_pred -----CcceeEEEEEEECCccchhHHHHHHHHHH---CCC-ceeecCC-ccccChhhhhcCcCCChHHHH----HHhCeE
Confidence 01234467888864 3345667777664 343 3332211 1111111100 000111111 124689
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
|++++ ...++++++.+.++|+++
T Consensus 367 rl~~~-~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 367 NLPTH-AGLTEADIDRVIAALDQV 389 (391)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHTT
T ss_pred EccCC-CCCCHHHHHHHHHHHHHH
Confidence 99999 888999999999888765
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-22 Score=174.60 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=168.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH--HhhhcCccc--ceeEEEecCC----CHHHHHH-hhhcC-------Cce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC--NITTTFVDIS----DHEMVNS-AIVQG-------RTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~--~~~~~~~~~--g~~~~~~~~~----d~~~l~~-~l~~~-------~~~ 65 (324)
+|+..++.+++++||+|+++.|+|.++... +. . . |.++..++.+ |++++++ ++ ++ +++
T Consensus 70 ~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~~~g~~~~~v~~~~~~~d~~~l~~~~i-~~~~~~~~~~~~ 143 (356)
T 1v72_A 70 AANALCLSAMTPPWGNIYCHPASHINNDECGAPE----F-FSNGAKLMTVDGPAAKLDIVRLRERTR-EKVGDVHTTQPA 143 (356)
T ss_dssp HHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH----H-HTTSCEEEECCCGGGCCCHHHHHHHTT-SSTTCTTSCEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH----H-HhCCcEEEEecCCCCeEcHHHHHHHhh-hcchhhccCCce
Confidence 467888888889999999999999876544 42 2 4 7788887764 8999999 88 43 689
Q ss_pred EEEEecCCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcC-----CCCccC----CCCcEEEeCCccccccCCCeeE
Q 020548 66 VLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPL-----VLSPAR----LGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 66 ~v~~~~~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~-----~~~~~~----~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+|++++|+| ||.+. ++++|+++|+++|+++|+|++|..+ ...+.. .+.|+++.|+||+ +++ +|
T Consensus 144 ~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~---~G 218 (356)
T 1v72_A 144 CVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVL---AA 218 (356)
T ss_dssp EEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCS---SC
T ss_pred EEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCc---Cc
Confidence 999999987 99954 5889999999999999999998432 122222 2678999999999 443 23
Q ss_pred -EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 134 -GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 134 -G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
|++++++++++.+....... ..........+......+ ..+....+++.++++++.+.|++. +.++..|.
T Consensus 219 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 292 (356)
T 1v72_A 219 EAIVLFNTSLATEMSYRRKRA--GHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT---- 292 (356)
T ss_dssp EEEEESSGGGHHHHHHHHHHT--TCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC----
T ss_pred cEEEEECHHHHhhHHHHhhcc--CchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCC----
Confidence 69988999988876554311 111122222222122112 223445667788899999999885 44554454
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
.++++++.++. .+.+.+.. .|+ .+..| . ++ +
T Consensus 293 ---------------~~~~~~~~~~~-----~~~~~l~~---~gi-~v~~g----------~-------------~~--~ 323 (356)
T 1v72_A 293 ---------------EANILFCRLDS-----AMIDALLK---AGF-GFYHD----------R-------------WG--P 323 (356)
T ss_dssp ---------------CSSEEEEEECH-----HHHHHHHH---TTC-BCBCS----------S-------------SS--T
T ss_pred ---------------CccEEEEEcCH-----HHHHHHHh---cCe-EEecc----------c-------------cC--C
Confidence 46688888852 45555543 232 11111 1 01 4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 290 GLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+++|++++ ...+++.++.+.++|+++-+
T Consensus 324 ~~iRi~~~-~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 324 NVVRFVTS-FATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp TEEEEECC-TTCCHHHHHHHHHHHHHTC-
T ss_pred CeEEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 78999999 77777777777777766543
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-23 Score=181.25 Aligned_cols=260 Identities=13% Similarity=0.062 Sum_probs=165.6
Q ss_pred chHHHHHHHccCCCC--EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGG--HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd--~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++|| .|+++.+.|........ .. ...|.++..++.+ |+++++++. ++++|++++|+||
T Consensus 73 ~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~-~~-~~~g~~~~~v~~~~~~~d~~~l~~~~---~~~~v~~~~p~np 147 (357)
T 3lws_A 73 MAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG-LK-ELHPIETILVGAADRLMTLDEIKALP---DIACLLLELPQRE 147 (357)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-HH-HHSSCEEEECSCTTSCCCHHHHHTCC---SCSEEEEESSBGG
T ss_pred HHHHHHHHHHhhcCCCcEEEecccceeeeeccch-hh-hccCcEEEEecCCCCCcCHHHHhcCc---CcceEEEEccccc
Confidence 367778888888888 67766666554432100 00 1147778777653 899998874 3899999999999
Q ss_pred c-ccccC---hHHHHHHHHhcCCEEEEcCCCC-c----CCCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 76 T-LAVAN---IPELSRLAHDKGVTVVVDNTFS-P----LVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 76 t-G~~~~---~~~i~~l~~~~~~~~ivD~~~~-~----~~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+ |.+.+ +++|+++|+++|+++|+|++|. + ..... ...+.|+++.|+||+++++. +|++++++++++
T Consensus 148 ~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~~~~ 224 (357)
T 3lws_A 148 IGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIA---GAILAGPAAFCQ 224 (357)
T ss_dssp GTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSS---CEEEEECHHHHH
T ss_pred CCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCc---eEEEEcCHHHHH
Confidence 8 98875 8899999999999999999974 1 11111 11357888999999996555 599999999999
Q ss_pred HHHHhhhhhhhccCCC-CCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-Ccee-CCCCCCCchhHHHHHHhcc
Q 020548 145 SMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVL-YPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~-~p~~~~~~~~~~~~~~~~~ 221 (324)
.+...... ..+.. .....+......+....++++++.++++++.+.|++.+ .++. .|.
T Consensus 225 ~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---------------- 285 (357)
T 3lws_A 225 TARIWKRR---YGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVP---------------- 285 (357)
T ss_dssp HHHHHHHH---TTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSC----------------
T ss_pred HHHHHHHH---hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCC----------------
Confidence 88766541 11111 11111111112222233445556788899999999874 4552 333
Q ss_pred CCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 222 EYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.++++++.++.. .....+.+.+.. .|+ .+. |+... +....++|+++| .
T Consensus 286 ---~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gi-~v~----------~g~~~------------~~~~~~~r~~i~-~ 335 (357)
T 3lws_A 286 ---VSNMFHLHFDGQAADISPKLEQVQEE---TGL-GFV----------GYLVD------------KDGYCSTEISVG-D 335 (357)
T ss_dssp ---SSSEEEEEEESCHHHHHHHHHHHHHH---HCE-ESC----------SCCEE------------CSSEEEEEEEBC-T
T ss_pred ---cceEEEEEecCChHHHHHHHHHHHHh---cCe-EEe----------ccccc------------CCCceEEEEEec-c
Confidence 577899998742 235566666664 333 222 21100 111258999999 6
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 020548 300 GTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~~ 318 (324)
.......+.++++++.+.+
T Consensus 336 ~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 336 AYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp TGGGSCHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHH
Confidence 6544455666777666643
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-23 Score=185.43 Aligned_cols=190 Identities=11% Similarity=0.024 Sum_probs=128.4
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccccee-EEEe---cCC----CHHHHHHhhh--cCCceEEEEecCC
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFV---DIS----DHEMVNSAIV--QGRTKVLYFESIS 73 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~-~~~~---~~~----d~~~l~~~l~--~~~~~~v~~~~~~ 73 (324)
+..+.+.++.|||+|++++|+|+++...++. .|.+ +... +.. |.+.+.+.++ .++++++++++||
T Consensus 126 ~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~-----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~ 200 (420)
T 4h51_A 126 AKLLTRVFDAETTPIYLSDPTWPNHYGVVKA-----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAH 200 (420)
T ss_dssp HHHHTTTSCTTTSCEEEEESCCTHHHHHHHH-----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSC
T ss_pred HHHHHHhcCCCCCEEEEecCCchhHHHHHHH-----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCC
Confidence 3344445678999999999999999998852 4544 3222 211 6777777663 3567788888999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------------CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------------~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||||...+ +++|+++|+++++++|+|++|.+|..... .....+++.|+||.|+++|+|+ ||++.
T Consensus 201 NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv-G~~~~ 279 (420)
T 4h51_A 201 NPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA-GTLSL 279 (420)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce-EEEEe
Confidence 99999974 77889999999999999999987754321 1145689999999999999997 99977
Q ss_pred ChhHHHHHHHhhhh---hhhccCCCCC---HHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 139 PANLVNSMMDLHQG---ALMLLGPTMN---PKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 139 ~~~~~~~l~~~~~~---~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
+.+..+........ ..+.....+. +..+...+... ..+....+++.++++.+.+.|++.+.
T Consensus 280 ~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~ 353 (420)
T 4h51_A 280 LLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT 353 (420)
T ss_dssp ECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 65444333322110 1112222222 22222233221 22445567788999999999999864
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-23 Score=187.49 Aligned_cols=180 Identities=12% Similarity=0.113 Sum_probs=131.2
Q ss_pred chHHHHHHHc--------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~--------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+||..++.++ ++|||+|+++.|+|+.+...++. .|.++.... .|+++|++++ ++++++|++++||
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~-----~g~~~~~~~-~d~~~l~~~~-~~~~k~v~l~~p~ 206 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-----FDKKGYVWA-GNAANYVNVS-NPEQYIEMVTSPN 206 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-----SCBTTEEEE-EEGGGGTTCS-CGGGEEEEEESSC
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH-----cCCeeeeec-CCHHHHHHhh-cCCceEEEEcCCC
Confidence 5788999999 89999999999999999988852 455544332 2678888888 6689999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccC--CCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR--LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~ 150 (324)
||||.+.+ + +++ ++..+.|+++..-...... .+.+++++|+||.++++|.|+ ||+++ ++++++.+....
T Consensus 207 NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~~~~~~~~l~~~l~~~~ 278 (427)
T 2hox_A 207 NPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYM 278 (427)
T ss_dssp TTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHH
T ss_pred CCcccccH-H----HHc--CCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCceE-EEEEECCHHHHHHHHHHH
Confidence 99999999 4 233 5678899887321111122 468999999999999999997 99998 589999988776
Q ss_pred hhhhhccCCCCCHHHHHHHhcCc------------ccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 151 QGALMLLGPTMNPKVAFELSERI------------PHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
.. .....+.+.+..+..++... ..+....+++.++++.+.+.|++.
T Consensus 279 ~~-~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 336 (427)
T 2hox_A 279 TK-NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS 336 (427)
T ss_dssp HH-HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred Hh-cCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 51 11223334444443343321 223455667788999999999987
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=183.87 Aligned_cols=255 Identities=14% Similarity=0.156 Sum_probs=164.0
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHH-HHhhhcCc-------ccceeEEEecCCCHHHHHHhhhcCCceEEEEec
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFFPR-------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~-~~~~~~~~-------~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
+|+..+++++. .+||+|++++|+|++... .+...... .....+..++..|++++++++ ++++++|++++
T Consensus 115 ~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~ 193 (395)
T 1vef_A 115 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV-DEETAAVILEP 193 (395)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC-CTTEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHh-ccCEEEEEEeC
Confidence 46777777653 578999999999976433 33210000 001124555557999999999 77899999988
Q ss_pred CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 72 ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 72 ~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
++||||.+.+ +++|+++|+++|+++|+|++|+++... + .....|++ |+||++++ |.|+ |+++.++
T Consensus 194 ~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-g~~~-G~~~~~~ 269 (395)
T 1vef_A 194 VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGG-GVPL-GVAVMRE 269 (395)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSC-EEEEEEH
T ss_pred ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccC-CCce-EEEEehH
Confidence 8999999887 999999999999999999999765321 1 22346766 78999987 8997 9999888
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+..... ....+.+....+.+...++.+ ....++..++++++.+.|++.+..+....
T Consensus 270 ~~~~~l~~~~~----~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------------- 332 (395)
T 1vef_A 270 EVARSMPKGGH----GTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREV------------- 332 (395)
T ss_dssp HHHHTSCTTSS----CCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEE-------------
T ss_pred HHHhhhccCCc----CCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCceEEE-------------
Confidence 87766543211 112223333322222222222 23456678888999999988754211000
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhh-ccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
.+.|+++++.++.. ...+.+.+. . .|+.. .|. .++++|+|++
T Consensus 333 ----~~~g~~~~~~~~~~--~~~l~~~l~~~---~gi~v-----------~~~-----------------~~~~iRi~~~ 375 (395)
T 1vef_A 333 ----RGMGLMVGLELKEK--AAPYIARLEKE---HRVLA-----------LQA-----------------GPTVIRFLPP 375 (395)
T ss_dssp ----EEETTEEEEEESSC--SHHHHHHHHHH---HCEEC-----------EES-----------------STTEEEECCC
T ss_pred ----EEEEEEEEEEEcCh--HHHHHHHHHHH---CCeEE-----------ecC-----------------CCCEEEEeCC
Confidence 02567999999731 345555554 3 23211 110 1478999998
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 020548 298 YLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 298 ~~~~~~~~~~~l~~~l~~~ 316 (324)
...+++.++.+.++|+++
T Consensus 376 -~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 376 -LVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp -TTCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH
Confidence 777777777777766554
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=186.71 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=173.9
Q ss_pred chHHHHHHHccCCC--------CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQLCSSG--------GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~~~~g--------d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~ 68 (324)
+|+..+++++.++| |+|+++.++|+++...++ ..|.+++.++.+ |+++|++++ ++++++|+
T Consensus 171 ~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-----~~G~~v~~v~~~~~~~~d~~~Le~~i-~~~~~~v~ 244 (514)
T 3mad_A 171 ESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-----YFGIKLVRTPLDADYRADVAAMREAI-TPNTVVVA 244 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-----HHTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-----HcCCeeEEeeeCCCCCCCHHHHHHHh-ccCCEEEE
Confidence 46778888877766 999999999999988874 368888888765 899999999 78999999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCC-------------CccCCCCcEEEeCCccccccCCCeeEEE
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-------------SPARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~-------------~~~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
+++|+||||.+.|+++|+++|+++|+++|+|++|+++.. +....++|+++.|+||++++ +.++ |+
T Consensus 245 ~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~-g~ 322 (514)
T 3mad_A 245 GSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYG-AKGT-SV 322 (514)
T ss_dssp EETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCC-CSSC-EE
T ss_pred EeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCC-CCCe-EE
Confidence 999999999999999999999999999999999965422 11233789999999999655 4565 88
Q ss_pred EEcChhHHHHHHHhhh-hh-------hhccCCCCCH--HHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCcee
Q 020548 136 VCGPANLVNSMMDLHQ-GA-------LMLLGPTMNP--KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVL 202 (324)
Q Consensus 136 i~~~~~~~~~l~~~~~-~~-------~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 202 (324)
++.+++.......... .+ ....+..... ..++..+. +...++...++..++++++.+.|++. ++.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 402 (514)
T 3mad_A 323 ILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKIL 402 (514)
T ss_dssp EEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEES
T ss_pred EEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Confidence 8666554433211100 00 0011111111 12222222 22335667778889999999999987 44544
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.+. .++++|..++ .+...+.+.+.. .|+. . ++.
T Consensus 403 ~~~--------------------~~~~~~~~~~-~~~~~l~~~L~~---~Gi~---v---------~g~----------- 435 (514)
T 3mad_A 403 GDP--------------------LWVIAVASDE-LNIYQVMEEMAG---RGWR---L---------NGL----------- 435 (514)
T ss_dssp SCC--------------------SSEEEEECSS-SCHHHHHHHHHT---TTCB---C---------EEE-----------
T ss_pred CCC--------------------eEEEEEeCCC-CCHHHHHHHHHh---cCCE---e---------ccC-----------
Confidence 332 3378887753 235567777664 2321 1 100
Q ss_pred HhcCCCCCeEEEEeccC-----CCHHHHHHHHHHHHHhhhhc
Q 020548 283 ALAGISAGLVRMSVGYL-----GTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~-----~~~~~~~~~l~~~l~~~~~~ 319 (324)
. .++.+|++++ . ++.++.++.|.++++.+.+.
T Consensus 436 ---~-~~~~~Ri~~~-~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 436 ---H-RPPAFHVALT-LRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp ---T-TTTEEEEECC-GGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred ---C-CCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1367999987 3 34555667777777666543
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=186.65 Aligned_cols=251 Identities=12% Similarity=0.135 Sum_probs=161.4
Q ss_pred chHHHHHHHccC------C-CCEEEEcCCCchhHHH-HHhhhcCccccee------------EEEecCCCHHHHHHhhhc
Q 020548 2 SAISSVLMQLCS------S-GGHVVAARTLYGGTHA-LLTHFFPRACNIT------------TTFVDISDHEMVNSAIVQ 61 (324)
Q Consensus 2 ~ai~~~~~~~~~------~-gd~vl~~~p~y~~~~~-~~~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~ 61 (324)
+|+..+++++.. + +++|++.+|.|++... .+.. .|.+ +..++.+|++++++++ +
T Consensus 108 ~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-----~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l-~ 181 (397)
T 2ord_A 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA-----TGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKM-S 181 (397)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH-----SBCHHHHGGGCSCCTTEEEECTTCHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc-----cCChhhccccCCCCCCeeEecCCCHHHHHHHh-h
Confidence 467777776653 5 4789999999976443 3321 2322 6677777999999999 7
Q ss_pred CCceEEEEecCCCCccc-c---cChHHHHHHHHhcCCEEEEcCCCCcCCCC--cc-----CCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLA-V---ANIPELSRLAHDKGVTVVVDNTFSPLVLS--PA-----RLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~-~---~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~~-----~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|++++|+||||. + .++++|+++|+++|+++|+||+|+++... +. ....|++ |+||+++ +|.
T Consensus 182 ~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~ 258 (397)
T 2ord_A 182 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLG-GGV 258 (397)
T ss_dssp TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTS
T ss_pred cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccC-CCc
Confidence 89999999999999999 4 46889999999999999999999766432 11 1236766 6799998 589
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--Ccee--CCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVL--YPGL 206 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~--~p~~ 206 (324)
|+ |+++.+++++ .+..... ..++.++.+.+..+...+..... +...+++.++++++.+.|++.+ .... .+
T Consensus 259 r~-G~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-- 332 (397)
T 2ord_A 259 PI-GAVIVNERAN-VLEPGDH-GTTFGGNPLACRAGVTVIKELTK-EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVR-- 332 (397)
T ss_dssp CC-EEEEECSTTC-CCCTTSS-CCSSTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--
T ss_pred Ce-EEEEEchHhc-ccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEE--
Confidence 97 9998887765 4432111 11111122222222222222222 3456667888888888888752 2111 11
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
+.|.++++.+++.....++.+.+.. .|+ .+.|.
T Consensus 333 -----------------~~g~~~~~~~~~~~~~~~l~~~l~~---~gi-----------~v~~~---------------- 365 (397)
T 2ord_A 333 -----------------GMGLMIGIQFREEVSNREVATKCFE---NKL-----------LVVPA---------------- 365 (397)
T ss_dssp -----------------EETTEEEEEECTTSCHHHHHHHHHH---TTE-----------ECEEE----------------
T ss_pred -----------------EEeEEEEEEECChHHHHHHHHHHHH---CCC-----------EEccC----------------
Confidence 2467899999743335667777664 232 11111
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++++|+|++ ...++++++.+.++|+++
T Consensus 366 -~~~~iRis~~-~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 366 -GNNTIRFLPP-LTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp -TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1478999987 666666666666666544
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=186.50 Aligned_cols=253 Identities=17% Similarity=0.111 Sum_probs=167.9
Q ss_pred cCCCC-----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-c
Q 020548 12 CSSGG-----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-A 80 (324)
Q Consensus 12 ~~~gd-----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~-~ 80 (324)
.++|| +|+++.+.|+++...+. ..|.+++.++.+ |+++|++++ ++++++|++++| ||+|.+ .
T Consensus 148 ~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-----~~G~~vv~v~~~~~~~~d~~~L~~~i-~~~t~~v~~~~p-n~~G~~~~ 220 (474)
T 1wyu_B 148 EDRGEGRTRRVVLVPDSAHGSNPATAS-----MAGYQVREIPSGPEGEVDLEALKREL-GPHVAALMLTNP-NTLGLFER 220 (474)
T ss_dssp HHTTCTTTCCEEEEETTSCTHHHHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHC-STTEEEEEECSS-CTTSCCCT
T ss_pred HhcCCccCCCEEEEeCCcChhhHHHHH-----HCCCEEEEecCCCCCCcCHHHHHHhh-CCCceEEEEECC-CCCcccCC
Confidence 35888 99999999999998773 378888888865 899999999 788999999998 689998 6
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCC---CCccCCCCcEEEeCCccccccC-C---CeeEEEEEcChhHHHHHHH-hh--
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLV---LSPARLGADVVVHSISKFISGG-A---DIIAGAVCGPANLVNSMMD-LH-- 150 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~---~~~~~~~~d~~~~S~sK~~~~~-g---~r~~G~i~~~~~~~~~l~~-~~-- 150 (324)
++++|+++|+++|+++|+|++|.... ..+..+++|+++.|+||+|++| | .++ |+++.++++++.+.. ..
T Consensus 221 ~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~-G~~~~~~~l~~~l~~~~~~~ 299 (474)
T 1wyu_B 221 RILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGS-GPVGVKAHLAPYLPVPLVER 299 (474)
T ss_dssp THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCC-CCEEECGGGGGGCCSCEEEE
T ss_pred CHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCe-EEEEEcHHHHHhCCCCeeec
Confidence 99999999999999999999993322 2333457999999999999876 3 476 999999887766541 10
Q ss_pred hh--h----------hhccCCCCCHH---HHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhH
Q 020548 151 QG--A----------LMLLGPTMNPK---VAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 213 (324)
Q Consensus 151 ~~--~----------~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~ 213 (324)
.+ + ........+.. .++..+. +.+.+.+..++..++++++.+.|++.++++..+.
T Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------- 371 (474)
T 1wyu_B 300 GEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDG-------- 371 (474)
T ss_dssp CSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS--------
T ss_pred cCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCC--------
Confidence 00 0 00011112222 2222222 1233555667788999999999998765542222
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
.....+++.++.......+.+.+.. .|+.. +...+. ...++.+|
T Consensus 372 ----------~~~~~~~~~~~~~~~~~~l~~~L~~---~Gi~~------------~~~~~~-----------~~~~~~lR 415 (474)
T 1wyu_B 372 ----------PSMHEFVAQPPEGFRALDLAKGLLE---LGFHP------------PTVYFP-----------LIVKEALM 415 (474)
T ss_dssp ----------SCCSCEEEBCSTTCCHHHHHHHHHH---TTCCC------------CEESCS-----------TTSTTCEE
T ss_pred ----------CcceEEEEEcCCCCCHHHHHHHHHH---CCccc------------cccccc-----------cccCCEEE
Confidence 0111144455322335567777664 23311 111100 01247899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|++ ..++++.++.+.++|+.+.
T Consensus 416 is~~-~~~t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 416 VEPT-ETEAKETLEAFAEAMGALL 438 (474)
T ss_dssp ECCC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEee-cCCCHHHHHHHHHHHHHHH
Confidence 9999 7767777777777776654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=180.00 Aligned_cols=217 Identities=18% Similarity=0.140 Sum_probs=149.0
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce--eEEEecC------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
|+..++.+++++||+|++++|+|+++..... .. ...|. ....++. .|++++++++.+.++++|++++|+|
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~-~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~ 174 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-RV-NFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAY 174 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-TT-SHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSC
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHH-HH-HhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEecccc
Confidence 6788888889999999999999988742110 00 11333 3344421 3899999999434889999988999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCc-CCC-C----ccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-S----PARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~-~----~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
| ...|+++|.++|+++|+++|+|++|+. +.. . +.. ..|++++|+||+++ |++. ||++++ +++++.+.
T Consensus 175 ~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~--g~~~-G~~~~~~~~~~~~l~ 248 (407)
T 2dkj_A 175 P--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTLR--GPRG-GLILSNDPELGKRID 248 (407)
T ss_dssp C--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGGC--CCSC-EEEEESCHHHHHHHH
T ss_pred C--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccCC--CCCc-eEEEECCHHHHHHHH
Confidence 7 678999999999999999999999954 421 1 122 37999999999775 5674 999998 79988887
Q ss_pred HhhhhhhhccCCCCCHHHH---HHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 148 DLHQGALMLLGPTMNPKVA---FELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
..... ...+++.+... ..++.. ...++...+++.++++++.+.|++.+.++..|.
T Consensus 249 ~~~~~---~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----------------- 308 (407)
T 2dkj_A 249 KLIFP---GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGG----------------- 308 (407)
T ss_dssp HHHTT---TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS-----------------
T ss_pred hhhcc---cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCC-----------------
Confidence 76542 22223333211 122222 234566777889999999999999876554321
Q ss_pred CCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 223 YGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 223 ~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
..++++++.++. ......+.+.+..
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~~l~~ 334 (407)
T 2dkj_A 309 -TDNHLFLVDLRPKGLTGKEAEERLDA 334 (407)
T ss_dssp -CSSSEEEEECGGGTCCHHHHHHHHHH
T ss_pred -CCceEEEEECcccCCCHHHHHHHHHH
Confidence 257789999863 1134556666653
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=175.09 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=181.7
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+++ |
T Consensus 68 ~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~ 138 (418)
T 2c81_A 68 TALMLALEALGIGEGDEVIVPSLTWIATATAVL-----NVNALPVFVDVEADTYCIDPQLIKSAI-TDKTKAIIPV---H 138 (418)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCHHHHGGGC-CTTEEEECCB---C
T ss_pred HHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-----HcCCEEEEEecCCCCCCcCHHHHHHhh-CCCCeEEEEe---C
Confidence 4788888888 8999999999999999998874 368888887754 799999999 7789998864 6
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CCc--cCCCCcEEEeCC--ccccccCCCeeEEEEEc-ChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSP--ARLGADVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~~--~~~~~d~~~~S~--sK~~~~~g~r~~G~i~~-~~~~~~~l~~ 148 (324)
|||...++++|.++|+++|+++|+|++|+.+. .+. ...-.|+++.|+ ||++++ | + +||++. ++++.+.+..
T Consensus 139 ~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~-g-~-~g~~~~~~~~l~~~~~~ 215 (418)
T 2c81_A 139 LFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTA-G-E-GGIIVTKNPRLFELIQQ 215 (418)
T ss_dssp CTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS-S-S-CEEEEESCHHHHHHHHH
T ss_pred CcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCC-C-C-eEEEEECCHHHHHHHHH
Confidence 89999999999999999999999999995543 221 111236777777 999987 6 7 499988 4788888876
Q ss_pred hhhhhhh-----------cc---------C--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCC
Q 020548 149 LHQGALM-----------LL---------G--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPG 205 (324)
Q Consensus 149 ~~~~~~~-----------~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~ 205 (324)
...+... +. + ..+....++.....+..++...++..++++++.+.|++.+ .++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 295 (418)
T 2c81_A 216 LRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRP 295 (418)
T ss_dssp HHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC
T ss_pred HHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCC
Confidence 5432100 00 0 0023333333333445566777777888999999998873 3443222
Q ss_pred CCCCchhHHHHHHhccCCCcc-eEEEEEeCC----HHHHHHHHHHhhccccccccc--cccCCccceecccccccc--CC
Q 020548 206 LEDHPHHELLKSMANKEYGFG-GLLCLDMET----EEKANRLMNYLQNYAQFGFMA--VSLGYYETLMSCSGSSTS--SE 276 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~l~~----~~~~~~~~~~l~~~~~~g~~~--~~~g~~~~~~~~~~~~~~--~~ 276 (324)
.... ... .++.+.+++ ..+...+.+.|.. ++|+.. ++.|.. .....|..... ..
T Consensus 296 --~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~gI~~~~v~~~~~-p~~~~~~~~~~~~~~ 358 (418)
T 2c81_A 296 --PQVS------------RQTYYGYVFRFDPVKFGGLNADQFCEILRE--KLNMGTFYLHPPYL-PVHKNPLFCPWTKNR 358 (418)
T ss_dssp --TTEE------------ECCCSEEEEEECGGGTTTCCHHHHHHHHHH--HHTCCTTTEECCCC-CGGGCTTCCGGGCTT
T ss_pred --CCCc------------ccccEEEEEEEccccccccCHHHHHHHHHH--cCCCCccccccccc-ccccCchhccccccc
Confidence 0000 011 255577762 2245667777664 124320 333321 00000100000 00
Q ss_pred ------CCHHHHHhcCC------CCCeEEEEeccCCC-HHHHHHHHHHHHHhhhhc
Q 020548 277 ------LNAEEKALAGI------SAGLVRMSVGYLGT-LDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 277 ------~~~~~~~~~~~------~~~~iR~s~g~~~~-~~~~~~~l~~~l~~~~~~ 319 (324)
.+......... ..+.+|++++ ... ++++++.+.++|+++.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~-~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 359 YLKSVRKTEAYWRGLHYPVSERASGQSIVIHHA-ILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp SCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGG-GGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccCCChHHHHHHhCEEEecCC-ccCCCHHHHHHHHHHHHHHHHh
Confidence 00000000001 1268999999 888 888899999998887554
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=178.59 Aligned_cols=261 Identities=16% Similarity=0.100 Sum_probs=165.6
Q ss_pred chHHHHHHHccCCCCE--EEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~--vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..++++++++||+ |+++.+.|....... ... ...|.++..++.+ |+++++++ .+++++|++++|+||
T Consensus 74 ~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~~d~~~l~~~--~~~~~~v~~~~p~n~ 149 (359)
T 3pj0_A 74 MAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLK-ELQQITPLLLGTANQLLTIDDIKSL--REPVSSVLIELPQRE 149 (359)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHH-HHHCCEEEECSCTTSCCCHHHHHTC--SSCCSEEEEESSBGG
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHH-HhcCceEEecCCcCCCcCHHHHHhc--cCCceEEEEEecccC
Confidence 4677888888888887 444545444332110 000 1157788887754 89999887 578999999999999
Q ss_pred c-ccccChHH---HHHHHHhcCCEEEEcCCCCcCC-----CCc--cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 76 T-LAVANIPE---LSRLAHDKGVTVVVDNTFSPLV-----LSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 76 t-G~~~~~~~---i~~l~~~~~~~~ivD~~~~~~~-----~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+ |.+.+.++ |+++|+++|+++|+|++|.... ..+ ...+.|+++.|+||++++++ +|++++++++++
T Consensus 150 ~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~l~~ 226 (359)
T 3pj0_A 150 IGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA---GAILAGNDDFVQ 226 (359)
T ss_dssp GTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS---CEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc---eEEEECCHHHHH
Confidence 8 68877554 5999999999999999973221 111 12367899999999998764 588899999999
Q ss_pred HHHHhhhhhhhccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CCcee-CCCCCCCchhHHHHHHhc
Q 020548 145 SMMDLHQGALMLLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVL-YPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~p~~~~~~~~~~~~~~~~ 220 (324)
.+...... ..+. ......++. ...+.....+++++.++++++.+.|+++ +.++. .|.
T Consensus 227 ~~~~~~~~---~~~~~~~~~~~~~a~-~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--------------- 287 (359)
T 3pj0_A 227 EAKIWKRR---YGGDLISLYPYILSA-DYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVP--------------- 287 (359)
T ss_dssp HHHHHHHH---TTCCCSCCHHHHHHH-HHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSC---------------
T ss_pred HHHHHHHH---hCCCcchhHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCC---------------
Confidence 98875431 1111 122222221 1122222245566788899999999997 44553 333
Q ss_pred cCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 221 KEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
.++++++.++. ......+.+.+.. .|+ .+. |+..+. ....+++|++++
T Consensus 288 ----~~~~~~~~~~~~~~~~~~~l~~~l~~---~GV-~v~----------~g~~~~-----------~~~~~~~r~~i~- 337 (359)
T 3pj0_A 288 ----VSNMFHVYFENSADEIGAILTKIQDE---TGV-GIS----------GYLQEK-----------SADVCAFEVSVG- 337 (359)
T ss_dssp ----SSSEEEEEESSCHHHHHHHHHHHHHH---HCE-ECC----------SCCEEE-----------ETTEEEEEEECC-
T ss_pred ----cceEEEEEecCccchhHHHHHHHHHh---cCc-Eec----------CCcccc-----------CCCceEEEEEec-
Confidence 46688888873 2345667676664 333 222 221110 011368999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~ 318 (324)
........+.++++++.+.+
T Consensus 338 ~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 338 DAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp TTGGGSCHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHh
Confidence 66555555677777766643
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=176.18 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=184.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCC--ceEEEEecC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGR--TKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~--~~~v~~~~~ 72 (324)
+|+..++.++ ++|||+|+++.|+|.++...+. ..|.++++++.+ |++++++++.+++ +++|+ +
T Consensus 64 ~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~ 135 (377)
T 3ju7_A 64 LGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-----WCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---P 135 (377)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---C
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---E
Confidence 4778888887 8999999999999999988773 378888888754 8999999884445 89888 6
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCC---CCcEEEeCC--ccccccCCCeeEEEEE-cChhHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARL---GADVVVHSI--SKFISGGADIIAGAVC-GPANLVNS 145 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~---~~d~~~~S~--sK~~~~~g~r~~G~i~-~~~~~~~~ 145 (324)
+||+|...|+++|.++|+ +|+++|+|++|+ +........ ..|+.+.|+ +|++++ | . ||+++ .++++.+.
T Consensus 136 ~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~-g-~-gG~~~~~~~~l~~~ 211 (377)
T 3ju7_A 136 YATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGI-G-E-GGLIYSKNEEDIQR 211 (377)
T ss_dssp BCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCC-B-S-CEEEEESCHHHHHH
T ss_pred ECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCC-C-C-cEEEEECCHHHHHH
Confidence 789999999999999999 999999999983 222222222 257777775 699976 4 3 57775 46778888
Q ss_pred HHHhhhhhh--------hccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ce-eCCCCCCCchhHHH
Q 020548 146 MMDLHQGAL--------MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KV-LYPGLEDHPHHELL 215 (324)
Q Consensus 146 l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~-~~p~~~~~~~~~~~ 215 (324)
++....+.. ......+....++..+..+..++.+.++..++++++.+.|++.+. .+ ..|......
T Consensus 212 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~----- 286 (377)
T 3ju7_A 212 IKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAV----- 286 (377)
T ss_dssp HHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCB-----
T ss_pred HHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcc-----
Confidence 887655210 011234666776666666778888888999999999999998863 11 112211000
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecccccccc--CCCCHHHHHhcCCCCCeEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLVR 293 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~iR 293 (324)
...++.+.+++....+.+.+.|.. .|+ .++.+-....-..|....+ ..++.... +..+.+|
T Consensus 287 ---------~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~ 349 (377)
T 3ju7_A 287 ---------IQQFMPILCPEEVRNKQVIEDLKK---QKI-EARLYFSPSCHQQVLFRNYKSTDLTRTNK----IAKRIVS 349 (377)
T ss_dssp ---------CCSSEEEECCTTSCHHHHHHHHHT---TTB-CCBCTTSSCGGGSGGGTTSCBSCCHHHHH----HHHHEEE
T ss_pred ---------eEEEEEEEeCChhhHHHHHHHHHH---CCC-ceecccCCccccchhhhcCCCCCCHHHHH----HHhCEEE
Confidence 112446666642235667777764 343 3333321111111111111 01111111 1247899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
|+++ ...++++++.+.+++.++-.
T Consensus 350 lp~~-~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 350 LPLW-EGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp ECCC-TTCCHHHHHHHHHHHTC---
T ss_pred CCCC-CCCCHHHHHHHHHHHHHHHh
Confidence 9999 88888888988888876643
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-23 Score=181.17 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=163.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHH--HHHhhhcCcccceeEEEecCC---------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTH--ALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~--~~~~~~~~~~~g~~~~~~~~~---------d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++.++++|||+|++.++.+.+.. ..++ . .| +++.++.+ |.++++ + ++++++|+++
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~----~-~g-~~~~v~~~~~~~~~~~~~~~~~~--i-~~~t~~v~~~ 149 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASKALKEAK----L-IG-DTHVAASSEASNYMTLPKLQEIQ--L-QDNAAYLHLT 149 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH----H-HS-CEEEEEECGGGTTCSCCCGGGCC--C-CTTEEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHH----H-hC-CeEEEecccccccccCCCHHHcc--c-CCCcCEEEEe
Confidence 5788899999999999998877655432 2332 2 56 66665432 333332 5 6789999999
Q ss_pred cCCCCcccc-cChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 71 SISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 71 ~~~nptG~~-~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+++||||.. .|+++| +|+++++|++|+.... +.++ ..|++++|+||++|++| + ||++.++++++.+.+
T Consensus 150 ~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~-~~~~~~~d~~~~s~~K~~g~~G--~-G~l~~~~~~~~~l~~ 219 (362)
T 2c0r_A 150 SNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR-PFDLNQFGLVYAGAQKNLGPSG--V-TVVIVREDLVAESPK 219 (362)
T ss_dssp SEETTTTEECSSCCCC------TTSCEEEECTTTTTSS-CCCGGGCSEEEEETTTTTCCSS--C-EEEEEEGGGSSSCCT
T ss_pred CCcCccceeccccccc------CCCEEEEEChhhccCC-ccchhHCcEEEEeccccccCcC--c-EEEEEcHHHHhhccc
Confidence 999999996 678776 7999999999843322 2222 24899999999998766 4 999998887665543
Q ss_pred hhhhh--------hhccCCCCCHH---HHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCC-C-ceeCCCCCCCchh
Q 020548 149 LHQGA--------LMLLGPTMNPK---VAFELSERIP---HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHH 212 (324)
Q Consensus 149 ~~~~~--------~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~p~~~~~~~~ 212 (324)
..... ......++... .+..++.... .++...+++.++++++.+.|++.+ . .+..+. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~---- 293 (362)
T 2c0r_A 220 HLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV--D---- 293 (362)
T ss_dssp TSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG--G----
T ss_pred cCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCh--H----
Confidence 11000 00111222322 2222232211 356677778999999999999987 4 443211 0
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
...+++++|.+++..+...+.+.|.. .|+ .+ .++.. . .+.+
T Consensus 294 ----------~~~~~~~~~~~~~~~~~~~~~~~L~~---~gi-~~----------~~g~~--------------~-~~~i 334 (362)
T 2c0r_A 294 ----------SRSDMNITFRLASEELEKEFVKASEQ---EGF-VG----------LKGHR--------------S-VGGL 334 (362)
T ss_dssp ----------GBCSSEEEEECSCHHHHHHHHHHHHH---TTE-ES----------CBCCT--------------T-TCSE
T ss_pred ----------HcCCcEEEEEcCCcchHHHHHHHHHH---CCC-ee----------ccCCC--------------C-CCEE
Confidence 01355788988765567788888764 343 21 11111 0 2569
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|+|++ ..+++++++.+.++|+.+.
T Consensus 335 Ris~~-~~~~~e~i~~l~~~l~~~~ 358 (362)
T 2c0r_A 335 RASIY-NAVPYESCEALVQFMEHFK 358 (362)
T ss_dssp EEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEECC-CCCCHHHHHHHHHHHHHHH
Confidence 99999 8878888888888887764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=172.63 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=168.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH--HhhhcCcccceeEEEecCC----CHHHHHHhhhcC------CceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRACNITTTFVDIS----DHEMVNSAIVQG------RTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~--~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~------~~~~v~~ 69 (324)
+|+..++++++++||+|++++|+|+++... ++ . .|.++..++.+ |++++++++.+. ++++|++
T Consensus 77 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 77 QTNLIACSLALRPWEAVIATQLGHISTHETGAIE----A-TGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH----H-TTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh----c-CCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 578888888899999999999999998762 32 2 67888888765 699999998433 3899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcC--C---CCccC----CCCcEEEeCCccccccCCCeeEEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL--V---LSPAR----LGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~--~---~~~~~----~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++| ||||.+.| +++|+++|+++|+++|+|++|.++ . ..... ...|+++.|++|+.++ .. .|+++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~--~~-~g~l~ 227 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGM--FG-EALII 227 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCS--SC-EEEEE
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCC--Cc-eEEEE
Confidence 999 79999988 889999999999999999998332 1 11111 2578999999997433 33 39999
Q ss_pred cChhHHHHHHHhhhhhhhccCCC-CCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 138 GPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
.++++++.+.............. ........++.. ..++...+++.++++++.+.|+..+.++..|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----------- 295 (359)
T 1svv_A 228 LNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKD-NLFFELGAHSNKMAAILKAGLEACGIRLAWPS----------- 295 (359)
T ss_dssp CSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTST-THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-----------
T ss_pred EcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhccCCeEEccCC-----------
Confidence 89888777765432110011111 111111112222 33556777789999999999954455544343
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
.++++++.++ ..+.+.+.. ++|+.. .+.. +..++++|+|+
T Consensus 296 --------~~~~~~~~~~-----~~~~~~l~~--~~gi~v-----------~~~~--------------~~~~~~iRi~~ 335 (359)
T 1svv_A 296 --------ASNQLFPILE-----NTMIAELNN--DFDMYT-----------VEPL--------------KDGTCIMRLCT 335 (359)
T ss_dssp --------SSSEECBEEE-----HHHHHHHTT--TEECEE-----------EEEE--------------TTTEEEEEEEC
T ss_pred --------ccceEEEEcC-----HHHHHHHHH--hcCEEE-----------Eecc--------------cCCCceEEEEc
Confidence 4667777774 245555553 124311 0000 01246899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 020548 297 GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+ ...++++++.+.++|+++-
T Consensus 336 ~-~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 336 S-WATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp C-TTCCHHHHHHHHHHHHHC-
T ss_pred c-CcCCHHHHHHHHHHHHHHH
Confidence 9 7777777777777776653
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=181.83 Aligned_cols=258 Identities=12% Similarity=0.119 Sum_probs=162.3
Q ss_pred chHHHHHHHccC-------CC-CEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~-------~g-d~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~~~ 65 (324)
+|+..+++++.. +| ++|++.+|+|++........... -....+..++..|+++|++++ +++++
T Consensus 125 eA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i-~~~~~ 203 (420)
T 2pb2_A 125 EANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVM-DDHTC 203 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHC-CTTEE
T ss_pred HHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHh-ccCce
Confidence 467777777654 67 59999999998754332111100 011125666667999999999 78899
Q ss_pred EEEEecCCCCcccc----cChHHHHHHHHhcCCEEEEcCCCCcCCCC--c-----cCCCCcEEEeCCccccccCCCeeEE
Q 020548 66 VLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 66 ~v~~~~~~nptG~~----~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~-----~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
+|++++++|++|.. .++++|+++|+++|+++|+||+|.++... . .....|++ |+||+++ +|.|+ |
T Consensus 204 ~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~-~G~~i-G 279 (420)
T 2pb2_A 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG-GGFPV-S 279 (420)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-E
T ss_pred EEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc-CCCce-E
Confidence 99999999988862 46899999999999999999999666432 1 22356776 5899998 58997 9
Q ss_pred EEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC--CceeCCCCCCCchh
Q 020548 135 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHH 212 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~p~~~~~~~~ 212 (324)
+++.++++++.+..... ..++.++.+.+.++...+..+.. +...++..++++++.+.|++.. .....
T Consensus 280 ~~~~~~~l~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--------- 348 (420)
T 2pb2_A 280 AMLTTQEIASAFHVGSH-GSTYGGNPLACAVAGAAFDIINT-PEVLQGIHTKRQQFVQHLQAIDEQFDIFS--------- 348 (420)
T ss_dssp EEEECHHHHTTCC-----CCEECCCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCEE---------
T ss_pred EEEEhHHHHHhhcCCCc-CcccCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeE---------
Confidence 99998887766654222 11122222222222222322222 3556677888888888887752 11100
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHH--HHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
...+.|.+++++++... ...++.+.+.. .|+ .+.|. .++
T Consensus 349 --------~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~---~Gi-----------~v~~~-----------------~~~ 389 (420)
T 2pb2_A 349 --------DIRGMGLLIGAELKPKYKGRARDFLYAGAE---AGV-----------MVLNA-----------------GAD 389 (420)
T ss_dssp --------EEEEETTEEEEEECGGGTTCHHHHHHHHHH---TTE-----------ECEES-----------------STT
T ss_pred --------EEEecceEEEEEECCCchHHHHHHHHHHHH---CCC-----------EEEeC-----------------CCC
Confidence 00125779999987432 35667777664 333 11111 147
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 291 LVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 291 ~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+|+|++ ...++++++.+.++|++
T Consensus 390 ~iRl~~~-~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 390 VMRFAPS-LVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp EEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH
Confidence 8999987 65555555555555544
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=174.43 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=138.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh-cCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|++........ ... .+..+.+++.+ |++++++++.++++++|++++|+|
T Consensus 105 ~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~ 183 (425)
T 3ecd_A 105 QANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSG-KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY 183 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC
T ss_pred HHHHHHHHHccCCCCEEEEcccccccceecchhhhhcc-cceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC
Confidence 4778888888999999999999998832111110 001 22344455443 899999999446899999998888
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCCC-----CccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~-----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
| ...++++|.++|+++|+++|+||+| .++.. .+.. ..|++++|+||+++ |++ +||++++ +++.+.+.
T Consensus 184 ~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~--g~~-~g~~~~~~~~~~~~~~ 257 (425)
T 3ecd_A 184 P--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLR--GPR-GGFVLTNDEEIAKKIN 257 (425)
T ss_dssp C--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGC--CCS-CEEEEESCHHHHHHHH
T ss_pred C--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccC--CCC-cEEEEeCCHHHHHHHH
Confidence 5 6788999999999999999999995 33321 2222 37899999999984 456 4999887 56777776
Q ss_pred HhhhhhhhccCCCCCHHHH--HHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 148 DLHQGALMLLGPTMNPKVA--FELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
...... ..++...+..+ ...+. ....+....++..++++++.+.|++.+..+..|.
T Consensus 258 ~~~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------ 317 (425)
T 3ecd_A 258 SAVFPG--LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG------------------ 317 (425)
T ss_dssp HHHC-------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------
T ss_pred hhhCcc--ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC------------------
Confidence 654311 11122222222 11221 1234556777888999999999999877654332
Q ss_pred CcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 224 GFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 224 ~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
+.+.++++.+++ ......+.+.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (425)
T 3ecd_A 318 TDNHLLLVDLRPKGLKGAQVEQALE 342 (425)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHH
Confidence 246688888862 123444555554
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=173.17 Aligned_cols=194 Identities=17% Similarity=0.158 Sum_probs=127.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
+|+..++.+++++||+|++++|+|+++..........-.+..+..++. .|++++++++.++++++|++++++|
T Consensus 98 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~-- 175 (417)
T 3n0l_A 98 QANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY-- 175 (417)
T ss_dssp HHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--
T ss_pred HHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--
Confidence 478888888999999999999999876542211100002334444443 3899999999436899999888776
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHh
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDL 149 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~ 149 (324)
|.+.++++|.++|+++|+++|+|+++ .+.. ..+.. +.|++++|+||+++ |++ +||++++ +++.+.+...
T Consensus 176 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~--g~~-~G~~~~~~~~~~~~~~~~ 251 (417)
T 3n0l_A 176 ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLR--GPR-GGIIMTNDEELAKKINSA 251 (417)
T ss_dssp CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTC--SCS-CEEEEESCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccC--CCC-eeEEEECCHHHHHHHhhh
Confidence 88999999999999999999999996 3332 11122 57999999999983 566 5999988 7888888766
Q ss_pred hhhhhhccCCCCCHHHHHH-HhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 150 HQGALMLLGPTMNPKVAFE-LSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.... ...++......+.. .+.. ...+..+.++..++++++.+.|++.+..+.
T Consensus 252 ~~~~-~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 306 (417)
T 3n0l_A 252 IFPG-IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLV 306 (417)
T ss_dssp HTTT-TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred hCCc-ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceec
Confidence 5411 11122222222211 1211 234566777788899999999999766544
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=180.35 Aligned_cols=265 Identities=12% Similarity=0.066 Sum_probs=171.0
Q ss_pred hHHHHHHHccCC--------CC-----EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCC
Q 020548 3 AISSVLMQLCSS--------GG-----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGR 63 (324)
Q Consensus 3 ai~~~~~~~~~~--------gd-----~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~ 63 (324)
|+..++.++..+ || +|+++.+.|.++...++ ..|++++.++.+ |++++++++ +++
T Consensus 129 a~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~ 202 (502)
T 3hbx_A 129 AIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR-----YFEVELKEVKLSEGYYVMDPQQAVDMV-DEN 202 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH-----HTTCEEEEECCBTTBCSCCHHHHHHHC-CTT
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH-----HcCceeEEEecCCCcCcCCHHHHHHHH-hhC
Confidence 455556555444 76 99999999999888773 378888888743 899999999 889
Q ss_pred ceEEEEecCCCCcccccChHHHHHHHHhc------CCEEEEcCCCCcCC----CCccC-----CCCcEEEeCCccccccC
Q 020548 64 TKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLV----LSPAR-----LGADVVVHSISKFISGG 128 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~~ivD~~~~~~~----~~~~~-----~~~d~~~~S~sK~~~~~ 128 (324)
+++|++++++||||.+.|+++|.++|+++ |+++++|++|+++. ..... .++|++..|+||+++++
T Consensus 203 t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p 282 (502)
T 3hbx_A 203 TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY 282 (502)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCC
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCC
Confidence 99999999999999999999999999999 99999999996442 22211 27899999999998664
Q ss_pred CCeeEEEE-EcChhHHHHHHHhhhhhh-------hccCCCCC--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 129 ADIIAGAV-CGPANLVNSMMDLHQGAL-------MLLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 129 g~r~~G~i-~~~~~~~~~l~~~~~~~~-------~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
. .+ |++ +.+++.+.........+. ...+.... ....+..+. +...+..++++..++++++.+.|++
T Consensus 283 ~-g~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 360 (502)
T 3hbx_A 283 A-GI-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360 (502)
T ss_dssp S-SC-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-Ce-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 43 655 555554422211111000 00011112 122222222 2334567778889999999999999
Q ss_pred CC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 197 LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 197 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
.+ +++..+. ...+++.|.+++. .+...+.+.|.. .|++. .....|...
T Consensus 361 ~~~~~~~~~~------------------~~~~~v~f~~~~~~~~~~~~l~~~L~~---~Gi~v-------~~~~~p~~~- 411 (502)
T 3hbx_A 361 TERFNIVSKD------------------EGVPLVAFSLKDSSCHTEFEISDMLRR---YGWIV-------PAYTMPPNA- 411 (502)
T ss_dssp TTCEEECSCS------------------SSSSEEEEEESSCSSCCHHHHHHHHHT---TTCBC-------CEEECCTTC-
T ss_pred CCCEEEEeCC------------------CCceEEEEEecCCCcCCHHHHHHHHHh---CCcEE-------eeccCCccc-
Confidence 87 4655441 1356899998742 234567777764 33311 111112110
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHH----HHHHHHhhhh
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ----FEKALSRMQD 318 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~----l~~~l~~~~~ 318 (324)
.....+|++++ ...+.++++. |+++++.+.+
T Consensus 412 -------------~~~~~lRisv~-~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 412 -------------QHITVLRVVIR-EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp -------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------CCceEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11368999999 7655555544 4455555543
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=181.19 Aligned_cols=260 Identities=12% Similarity=0.075 Sum_probs=174.2
Q ss_pred chHHHHHHHccC-----CC---CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEE
Q 020548 2 SAISSVLMQLCS-----SG---GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVL 67 (324)
Q Consensus 2 ~ai~~~~~~~~~-----~g---d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v 67 (324)
+|+..++.++++ +| |+|+++.++|+++...++ ..|.+++.++.+ |+++|++++ ++++++|
T Consensus 137 ~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v 210 (497)
T 3mc6_A 137 ESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-----YFGMKLRHVELDPTTYQVDLGKVKKFI-NKNTVLL 210 (497)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-----HSCCEEEEECBCTTTCSBCTTTTGGGC-CSSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-----HcCCeEEEEecCcccCcCCHHHHHHHH-hhCCEEE
Confidence 466777776654 56 899999999999988884 368888887653 589999999 7889999
Q ss_pred EEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC--------------CCccCCCCcEEEeCCccccccCCCeeE
Q 020548 68 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--------------LSPARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 68 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~--------------~~~~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
++++|+||||.+.|+++|+++|+++|+++|+|++|+++. .+....++|+++.|+||++++ +.++
T Consensus 211 ~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~- 288 (497)
T 3mc6_A 211 VGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFA-PKGS- 288 (497)
T ss_dssp EEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCC-CSSC-
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCC-CCCc-
Confidence 999999999999999999999999999999999995331 112234789999999998754 4554
Q ss_pred EEEEcChhHHHHHHHhhh-hh-hhc-cCCC-----CC--HHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhC--CC
Q 020548 134 GAVCGPANLVNSMMDLHQ-GA-LML-LGPT-----MN--PKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKL--GL 199 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~-~~-~~~-~~~~-----~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~ 199 (324)
|+++.+++.+........ .+ ... ...+ .. ....+..+.. ...+.+..++..++++++.+.|++. ++
T Consensus 289 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~ 368 (497)
T 3mc6_A 289 SVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDL 368 (497)
T ss_dssp EEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred eeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 888877655443321111 00 000 0001 11 1122222222 2335567778889999999999995 55
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCH
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 279 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 279 (324)
.+..+. .++++.|..++ .+...+.+.|.. .|+ .++.
T Consensus 369 ~~~~~~-------------------~~~~v~~~~~~-~~~~~l~~~L~~---~Gi-~v~~-------------------- 404 (497)
T 3mc6_A 369 DIMGNP-------------------RYSVISFSSKT-LNIHELSDRLSK---KGW-HFNA-------------------- 404 (497)
T ss_dssp EECSCC-------------------CSSEEEEECTT-TTHHHHHHHHHT---TTC-BCEE--------------------
T ss_pred EEecCC-------------------CeeEEEEeCCC-CCHHHHHHHHHh---CCE-EEec--------------------
Confidence 554332 46688888753 245667777764 232 1110
Q ss_pred HHHHhcCCCCCeEEEEec--cCCCHHHHHHHHHHHHHhhhhc
Q 020548 280 EEKALAGISAGLVRMSVG--YLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 280 ~~~~~~~~~~~~iR~s~g--~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+..+..+|+++. ..++.++.++.|.++++.+.+.
T Consensus 405 ------~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 405 ------LQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp ------CCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred ------CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 011245788876 1456777788888888776543
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=177.25 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=165.4
Q ss_pred chHHHHHHHcc---------CCC-CEEEEcCCCchhHHH-HHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcC
Q 020548 2 SAISSVLMQLC---------SSG-GHVVAARTLYGGTHA-LLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQG 62 (324)
Q Consensus 2 ~ai~~~~~~~~---------~~g-d~vl~~~p~y~~~~~-~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~ 62 (324)
+|+..++..+. .+| |+|++.+|.|++... .+. .... .....+..++.+|+++++++++++
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~-~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~ 222 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS-SSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDP 222 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHT-TCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhh-cCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCCC
Confidence 46666666543 357 899999999987543 332 1100 001345667777999999999446
Q ss_pred CceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCC-C
Q 020548 63 RTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-D 130 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g-~ 130 (324)
++++|++++.+|++|.+. ++++|+++|++||+++|+||+|.++... ......|++ |+||.+++ | .
T Consensus 223 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G~~ 299 (439)
T 2oat_A 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLY 299 (439)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSS
T ss_pred CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC-CCC
Confidence 789999998888899875 7999999999999999999999666421 112346766 78999986 7 8
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLED 208 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~ 208 (324)
|+ |++++++++++.+..... ..++ +..+..++.+...++.+. ...++..++++++.+.|++.+..+..
T Consensus 300 ~~-G~v~~~~~~~~~l~~~~~-~~t~---~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~----- 369 (439)
T 2oat_A 300 PV-SAVLCDDDIMLTIKPGEH-GSTY---GGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVT----- 369 (439)
T ss_dssp CC-EEEEECHHHHTTSCTTSS-CCSS---TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCTTTEE-----
T ss_pred Ce-EEEEECHHHHhccCCCCc-ccCC---CcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCCCcE-----
Confidence 96 999999888776654322 1112 223333332222222222 34566788889999999876432110
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCH--HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
...+.|.++++.++.. .....+.+.+.. .|++. .|.
T Consensus 370 ------------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~---~Gv~v-----------~~~---------------- 407 (439)
T 2oat_A 370 ------------AVRGKGLLNAIVIKETKDWDAWKVCLRLRD---NGLLA-----------KPT---------------- 407 (439)
T ss_dssp ------------EEEEETTEEEEEECCCSSCCHHHHHHHHHH---TTEEC-----------CBS----------------
T ss_pred ------------EEEeeeeEEEEEEecCccHHHHHHHHHHHH---CCeEE-----------ecC----------------
Confidence 0013578999998742 234567776663 23311 110
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++.+|++++ ...++++++.+.++|+++
T Consensus 408 -~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 408 -HGDIIRFAPP-LVIKEDELRESIEIINKT 435 (439)
T ss_dssp -SSSEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECc-cCCCHHHHHHHHHHHHHH
Confidence 1478999998 766676666666666554
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=177.22 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=156.9
Q ss_pred chHHHHHHHcc---------CCC-CEEEEcCCCchhHHHHHhhhcCc--------ccceeEEEecCCCHHHHHHhhhcCC
Q 020548 2 SAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGR 63 (324)
Q Consensus 2 ~ai~~~~~~~~---------~~g-d~vl~~~p~y~~~~~~~~~~~~~--------~~g~~~~~~~~~d~~~l~~~l~~~~ 63 (324)
+|+..+++.+. .+| |+|++.+|+|++........... .....+..++..|++++++++++++
T Consensus 133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~ 212 (433)
T 1z7d_A 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPN 212 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCC
Confidence 45666666532 467 99999999998864422111000 0013456666779999999994467
Q ss_pred ceEEEEecCCCCccccc----ChHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCC-Ce
Q 020548 64 TKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DI 131 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~----~~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g-~r 131 (324)
+++|++++.+|++|.+. ++++|+++|+++|+++|+||+|.++... ......|++ |+||.+++ | .|
T Consensus 213 ~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ 289 (433)
T 1z7d_A 213 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSG-GHYP 289 (433)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSC
T ss_pred EEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccC-CCCC
Confidence 89999998888899875 6899999999999999999999666321 112346766 68999984 8 89
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhC--CCceeCCCCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKL--GLKVLYPGLE 207 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~--~~~~~~p~~~ 207 (324)
+ |++++++++++.+..... ....+..+..++.+...++.+. ...++..++++++.+.|++. +.....
T Consensus 290 ~-G~v~~~~~~~~~l~~~~~----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~---- 360 (433)
T 1z7d_A 290 I-SAVLANDDIMLVIKPGEH----GSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVR---- 360 (433)
T ss_dssp C-EEEEECHHHHTTCCTTCC----CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEE----
T ss_pred e-EEEEECHHHHhhhccccc----cccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeE----
Confidence 6 999999988776654222 1111223333322222222222 34566677888888888765 321110
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCH-HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
...+.|.++++.++.. .....+.+.+.. .|++ +.|.
T Consensus 361 -------------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~---~Gv~-----------v~~~---------------- 397 (433)
T 1z7d_A 361 -------------DVRGKGLLCAIEFKNELVNVLDICLKLKE---NGLI-----------TRDV---------------- 397 (433)
T ss_dssp -------------EEEEETTEEEEEECTTTCCHHHHHHHHHH---TTEE-----------CCEE----------------
T ss_pred -------------EEEeeeeEEEEEEccChhHHHHHHHHHHH---CCeE-----------EecC----------------
Confidence 0013578999999742 235567777663 2331 1111
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.++.+|++++ ...++++++.+.++|+++
T Consensus 398 -~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 398 -HDKTIRLTPP-LCITKEQLDECTEIIVKT 425 (433)
T ss_dssp -TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1478999998 766666666655555443
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=175.30 Aligned_cols=255 Identities=14% Similarity=0.146 Sum_probs=161.1
Q ss_pred chHHHHHHHcc-------CCCCEEEEcCCCchhHHHHHhhhcC--------cccceeEEEecCCCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLC-------SSGGHVVAARTLYGGTHALLTHFFP--------RACNITTTFVDISDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~-------~~gd~vl~~~p~y~~~~~~~~~~~~--------~~~g~~~~~~~~~d~~~l~~~l~~~~~~~ 66 (324)
+|+..++..+. .++|+|++.+|.|++.......... ...+..+..++.+|++++++++ ++++++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~ 182 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV-NEKTCA 182 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC-CTTEEE
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhc-cCCeEE
Confidence 35666666554 3579999999999876433221110 0123466777778999999999 788999
Q ss_pred EEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEE
Q 020548 67 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGA 135 (324)
Q Consensus 67 v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~ 135 (324)
|++++++|++|.+.+ +++|+++|++||+++|+||+|.++... ......|++ |+||.+++ |.|+ |+
T Consensus 183 v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~ 258 (395)
T 3nx3_A 183 IILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GA 258 (395)
T ss_dssp EEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EE
T ss_pred EEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC-CCce-EE
Confidence 999999999999876 999999999999999999999766321 112235555 58899987 8997 99
Q ss_pred EEcChhH-HHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHh----CCCceeCCCCCC
Q 020548 136 VCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKK----LGLKVLYPGLED 208 (324)
Q Consensus 136 i~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~----~~~~~~~p~~~~ 208 (324)
+++++++ .+.+.+... .......+..++.+...++.+ +...++..++.+++.+.|++ ++.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 330 (395)
T 3nx3_A 259 FVINQKVASNSLEAGDH----GSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRK---- 330 (395)
T ss_dssp EEECHHHHHHHSCTTCC----SSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE----
T ss_pred EEEchhhhhhhcCCccc----CCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE----
Confidence 9999988 777654432 111222232222222222211 22334444455555555544 33211111
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
+.|.++++.+++......+.+.+.. .|+. ..+. .
T Consensus 331 ---------------~~g~~~~~~~~~~~~~~~~~~~l~~---~Gi~-----------v~~~-----------------~ 364 (395)
T 3nx3_A 331 ---------------GLGFMQGLSLDKSVKVAKVIQKCQE---NALL-----------LISC-----------------G 364 (395)
T ss_dssp ---------------EETTEEEEEECTTSCHHHHHHHHHH---TTEE-----------CEEE-----------------T
T ss_pred ---------------eEEEEEEEEeCCcchHHHHHHHHHH---CCCE-----------EecC-----------------C
Confidence 2577999999754346677777664 3331 1111 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++++|++++ ...++++++.+.++|+.+
T Consensus 365 ~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 391 (395)
T 3nx3_A 365 ENDLRFLPP-LILQKEHIDEMSEKLRKA 391 (395)
T ss_dssp TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 478999988 766666666666666554
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=176.92 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=138.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.+++++||+|+++.|+|+++....... ...| .....++. .|++++++++.+.++++|++++|+|
T Consensus 103 ~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~ 180 (420)
T 3gbx_A 103 QANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPV--NFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAY 180 (420)
T ss_dssp HHHHHHHHHHCCTTCEEEEEEEC--------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTC
T ss_pred HHHHHHHHHhcCCCCEEEecchhhcceeccchhh--hhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCcc
Confidence 4678888888999999999999998754221110 0122 22222221 4899999999444699999998888
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcCh---hHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLVNS 145 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---~~~~~ 145 (324)
| ...++++|+++|+++|+++|+||+| .++. ..... .+|++++|+||+++++ + |||+++++ ++.+.
T Consensus 181 ~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~--~-gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 181 S--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGP--R-GGLILAKGGDEELYKK 254 (420)
T ss_dssp C--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSC--S-CEEEEESSCCHHHHHH
T ss_pred C--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCC--C-ceEEEEcCCcHHHHHH
Confidence 6 4788999999999999999999997 3332 12222 4899999999999643 3 59999887 77777
Q ss_pred HHHhhhhhhhccCCCCCHHHH--HHHh-cC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 146 MMDLHQGALMLLGPTMNPKVA--FELS-ER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
+...... . ..++.+....+ ...+ .. ...+....+++.++++++.+.|++.+..+..+.
T Consensus 255 ~~~~~~~-~-~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------- 316 (420)
T 3gbx_A 255 LNSAVFP-S-AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG---------------- 316 (420)
T ss_dssp HHHHHC------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS----------------
T ss_pred hhhhcCC-C-CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC----------------
Confidence 7654431 1 12222222211 1122 22 234566778889999999999999777654322
Q ss_pred CCCcceEEEEEeCC-HHHHHHHHHHhh
Q 020548 222 EYGFGGLLCLDMET-EEKANRLMNYLQ 247 (324)
Q Consensus 222 ~~~~g~~~~~~l~~-~~~~~~~~~~l~ 247 (324)
..++++++.+.+ ......+.+.+.
T Consensus 317 --~~~~~~~~~~~~~~~~~~~~~~~l~ 341 (420)
T 3gbx_A 317 --TENHLFLLDLVDKNLTGKEADAALG 341 (420)
T ss_dssp --CSSSEEEEECGGGTCCHHHHHHHHH
T ss_pred --CCCeEEEEEcCCCCCCHHHHHHHHH
Confidence 146688888752 122444445554
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-21 Score=170.62 Aligned_cols=276 Identities=16% Similarity=0.168 Sum_probs=179.7
Q ss_pred chHHHHHHHc---cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~---~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+++++
T Consensus 58 ~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~- 130 (375)
T 2fnu_A 58 SALLTLYRNFSEFSADRNEIITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSVDY- 130 (375)
T ss_dssp HHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEECG-
T ss_pred HHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHH-----HCCCEEEEeccCCCCCCCHHHHHhhc-CcCceEEEEeCC-
Confidence 5788899998 8999999999999999998874 268888888764 788999988 778999888765
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CCccCCC--CcEEEeCCc--cccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~~~~~~--~d~~~~S~s--K~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
||.+.|+++|.++|+++|+++|+|++|+... ......+ .|+++.|+| |++++ | +||+++.+ +++.+.+.
T Consensus 131 --tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~ 205 (375)
T 2fnu_A 131 --AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMK 205 (375)
T ss_dssp --GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHH
T ss_pred --cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHH
Confidence 9999999999999999999999999984332 1111121 378888887 99965 5 33444534 77888887
Q ss_pred Hhhhhhh----------hccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHH
Q 020548 148 DLHQGAL----------MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHEL 214 (324)
Q Consensus 148 ~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~ 214 (324)
....+.. ...+ ..+.+..++..+.....++...++..++++++.+.|++.+ ..+..|.-.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~------- 278 (375)
T 2fnu_A 206 LFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLK------- 278 (375)
T ss_dssp HHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS-------
T ss_pred HHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC-------
Confidence 6543110 0011 1355555554443455677778888999999999999874 344322100
Q ss_pred HHHHhccCCCcceEEEEEeCCH-H-HHHHHHHHhhccccccccccccCCccceecccccc--ccC------CCCHHHHHh
Q 020548 215 LKSMANKEYGFGGLLCLDMETE-E-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS--TSS------ELNAEEKAL 284 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~-~-~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~--~~~------~~~~~~~~~ 284 (324)
..+.+.++++.++.. . +...+.+.|.. .|+ .++.+ + .|... ... ..+...
T Consensus 279 -------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gi-~v~~~-~-----~p~~~~~~~~~~~~~~~~~~~~--- 338 (375)
T 2fnu_A 279 -------DKSSNHLYPILMHQKFFTCKKLILESLHK---RGI-LAQVH-Y-----KPIYQYQLYQQLFNTAPLKSAE--- 338 (375)
T ss_dssp -------SCCCCSCEEEEECGGGGGGHHHHHHHHHH---TTE-ECBCC-C-----CCGGGSHHHHHHHCCCCCHHHH---
T ss_pred -------CCcceEEEEEEeCccccchHHHHHHHHHH---CCC-Ccccc-c-----cccccchhhhcCCCccCChHHH---
Confidence 001334667777632 2 46677777764 343 22211 1 11100 000 000000
Q ss_pred cCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 285 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 285 ~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
....+.+|+|++ ..+++++++.+.++|+.+-+
T Consensus 339 -~~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 339 -DFYHAEISLPCH-ANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp -HHHHHEEEECCC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -HHHhCEEEecCC-CCCCHHHHHHHHHHHHHHHH
Confidence 011368999999 88888888888888876643
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=179.91 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=130.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhc---Ccccc--eeEEEe--cC----CCHHHHHHhhhcCCceEEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF---PRACN--ITTTFV--DI----SDHEMVNSAIVQGRTKVLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~---~~~~g--~~~~~~--~~----~d~~~l~~~l~~~~~~~v~~~~ 71 (324)
|+..++.++++|||+|++++++|+++...+.... -...| .....+ +. .|+++|++++.++++++|++ +
T Consensus 122 an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~ 200 (483)
T 1rv3_A 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-G 200 (483)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-C
T ss_pred HHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-e
Confidence 5666688889999999999999988764331100 01122 344444 21 28999999993378999999 8
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChh----
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN---- 141 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~---- 141 (324)
++|++ .+.|+++|+++|+++|+++++|++|. ++. ..+.. ++|++++|+||+++ |+| +|+++.+++
T Consensus 201 ~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~--Gpr-gG~i~~~~~~~~~ 275 (483)
T 1rv3_A 201 TSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLR--GCR-AGMIFYRRGVRSV 275 (483)
T ss_dssp CSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGC--CCS-CEEEEEECSBCC-
T ss_pred CCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCC--CCC-ceEEEEcchhhhh
Confidence 89988 88999999999999999999999973 332 12222 68999999999985 456 599988764
Q ss_pred -----------HHHHHHHhhhhhhhccCCC-CCHHHHH-HHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 142 -----------LVNSMMDLHQGALMLLGPT-MNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 142 -----------~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
+.+.+.....+ . ..++. .....+. .++.. ...++.+.+++.++++++.+.|++.++++..|
T Consensus 276 ~~~~g~~~~y~~~~~~~~~~~~-~-~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 351 (483)
T 1rv3_A 276 DPKTGKEILYNLESLINSAVFP-G-LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG 351 (483)
T ss_dssp ------CCBCCHHHHHHHHHTT-T-TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred ccccCcchhhHHHHHhhhhcCC-c-ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccC
Confidence 33344332211 1 12222 2222211 12222 23456777888999999999999988766543
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=174.90 Aligned_cols=282 Identities=17% Similarity=0.106 Sum_probs=158.7
Q ss_pred chHHHHHHHcc--------CCCCEEEEcCCCchhH-------------HHHHhhhcCcccceeEEEecCC------CHHH
Q 020548 2 SAISSVLMQLC--------SSGGHVVAARTLYGGT-------------HALLTHFFPRACNITTTFVDIS------DHEM 54 (324)
Q Consensus 2 ~ai~~~~~~~~--------~~gd~vl~~~p~y~~~-------------~~~~~~~~~~~~g~~~~~~~~~------d~~~ 54 (324)
+|+..++.+++ ++||+|+++.|+|+.+ ...+..+... .|.++..++.+ |+++
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~ 167 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVED-QVAEVTFVPVSKVNGQVEVED 167 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHT-TSCEEEEECCCTTTSSCCHHH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHh-cCcEEEEEecCcccCCcCHHH
Confidence 46777777765 5899888888888653 2223222222 57888888752 7999
Q ss_pred HHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC----------CEEEEcCCCCcCCC--CccCCCCcEEEeCCc
Q 020548 55 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG----------VTVVVDNTFSPLVL--SPARLGADVVVHSIS 122 (324)
Q Consensus 55 l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~----------~~~ivD~~~~~~~~--~~~~~~~d~~~~S~s 122 (324)
|++++ ++++++|++++|+||||.+.|+++|.++|+++| +++|+|++|+.... +....+.|+++.|+|
T Consensus 168 l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~ 246 (432)
T 3a9z_A 168 ILAAV-RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGH 246 (432)
T ss_dssp HHHTC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGG
T ss_pred HHHhc-cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehh
Confidence 99999 778999999999999999999999999999999 99999999943321 112237899999999
Q ss_pred cccccCCCeeEEEEEcChhH-HHHHHHhhhh---hhhccCCCCCHHHHHH---HhcCc-ccHHHHHHHHHHHHHHHHHHH
Q 020548 123 KFISGGADIIAGAVCGPANL-VNSMMDLHQG---ALMLLGPTMNPKVAFE---LSERI-PHLGLRMKEHCHRALIFARRM 194 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~~-~~~l~~~~~~---~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~L 194 (324)
|++| .++ ||++.+++. ...+.+...+ ......++........ ++... ..++...+++.++++++.+.|
T Consensus 247 K~~g---~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L 322 (432)
T 3a9z_A 247 KFYG---PRI-GALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERL 322 (432)
T ss_dssp GTTC---CSC-EEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC---Ccc-eEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9874 344 999888765 2222211100 0001122223222211 22211 234556667788899999999
Q ss_pred HhC-CCceeCCCC-CCCchhHHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 195 KKL-GLKVLYPGL-EDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 195 ~~~-~~~~~~p~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
++. +..+..+.- +.. ...+++++|.+++ ......+.+.+.. +.++.|..+... .+..
T Consensus 323 ~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~------i~~~~G~~~~~~-~~~~ 382 (432)
T 3a9z_A 323 EAEFGKRIHLNSRFPGV-------------ERLPNTCNFSIQGSQLRGYMVLAQCQT------LLASVGASCHSD-HEDR 382 (432)
T ss_dssp HHHHGGGEEESSCCTTC-------------CBCTTEEEEEECSTTCCHHHHHHHCSS------EECBSSCGGGGG-GTTS
T ss_pred HhccCCcEEEeCCCCcc-------------cCCCCEEEEEeCCCCCcHHHHHHHhcC------eEEeccccccCC-CCCC
Confidence 885 443331110 000 0135578888874 1123445555431 233333322110 0000
Q ss_pred cccCCCCHHHHHhcCCC----CCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
........|.. ++++|+|++ ..+++++++.+.++|+.+
T Consensus 383 ------~~~~l~~~g~~~~~~~~~iRis~~-~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 383 ------PSPVLLSCGIPVDVARNAVRLSVG-RSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp ------CCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ------ccHHHHhcCCCccccCceEEEEcC-CCCCHHHHHHHHHHHHHH
Confidence 00111222332 479999999 776666666666666554
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=177.33 Aligned_cols=252 Identities=12% Similarity=0.071 Sum_probs=163.1
Q ss_pred chHHHHHHHccCC---CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHH-hhhcCCceEEEEec
Q 020548 2 SAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~---gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~-~l~~~~~~~v~~~~ 71 (324)
+|+..++.+++.+ ||.|+++.++|..... ++ . .| +++.++.+ |++++++ ++ ++++++|++++
T Consensus 78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~-~~----~-~g-~~~~v~~~~~~~~~d~~~l~~~~i-~~~~k~v~~~~ 149 (360)
T 1w23_A 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALKE-AK----L-LG-ETHIAASTKANSYQSIPDFSEFQL-NENDAYLHITS 149 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHH-HH----T-TS-EEEEEEECGGGTSCSCCCGGGCCC-CTTEEEEEEES
T ss_pred HHHHHHHHHhcCCCCcccEEEecchhHHHHHH-HH----H-hC-CeEEeecccccCcCCccchHhhcc-CCCCCEEEEeC
Confidence 4677778888765 5677777777765332 21 3 67 77777642 6778888 78 78899999999
Q ss_pred CCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 72 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 72 ~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|+||||.+.+ + +++++|+++|+|++|+.+.. +... ..|++++|+||+++++| + ||++.++++++.+....
T Consensus 150 ~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~-~~~~~~~di~~~s~sK~~~~~G--~-G~~~~~~~~~~~~~~~~ 220 (360)
T 1w23_A 150 NNTIYGTQYQ--N---FPEINHAPLIADMSSDILSR-PLKVNQFGMIYAGAQKNLGPSG--V-TVVIVKKDLLNTKVEQV 220 (360)
T ss_dssp EETTTTEECS--S---CCCCCSSCEEEECTTTTTSS-CCCGGGCSEEEEETTTTTSCTT--C-EEEEEEHHHHCSCCTTC
T ss_pred CCCCcceecc--c---ccccCCceEEEechhhcCCC-CcCcccCCEEEEEcccccCCCC--c-EEEEEcHHHHhhcccCC
Confidence 9999999976 3 33389999999999854332 1122 23899999999998665 4 99999888776554432
Q ss_pred hhhh--------hccCCCCCHHHHH---HHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCC-C-ceeC-CCCCCCchhH
Q 020548 151 QGAL--------MLLGPTMNPKVAF---ELSERIP---HLGLRMKEHCHRALIFARRMKKLG-L-KVLY-PGLEDHPHHE 213 (324)
Q Consensus 151 ~~~~--------~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~-p~~~~~~~~~ 213 (324)
.+.. ....+++...... ..+..+. .++...+++.++++++.+.|++.+ . .... |.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------- 292 (360)
T 1w23_A 221 PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG-------- 292 (360)
T ss_dssp CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG--------
T ss_pred cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch--------
Confidence 1000 0111233322221 1222111 355667778999999999999876 2 2211 21
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
...+.++++.+++.....++.+.+.. .|+ .+ .++.. .++++|
T Consensus 293 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~~----------~~~~~---------------~~~~iR 334 (360)
T 1w23_A 293 ---------SRSLMNVTFNLRNEELNQQFLAKAKE---QGF-VG----------LNGHR---------------SVGGCR 334 (360)
T ss_dssp ---------GBCSSEEEEECSSHHHHHHHHHHHHH---TTE-ES----------CBCCT---------------TTCSEE
T ss_pred ---------hccCcEEEEEcCCCccHHHHHHHHHH---CCe-ee----------ecCCC---------------CCCeEE
Confidence 01345899999865556778777664 333 11 11110 147899
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhh
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
+|++ ..+++++++.+.++|+.+.
T Consensus 335 is~~-~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 335 ASIY-NAVPIDACIALRELMIQFK 357 (360)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHH
T ss_pred EEec-CCCCHHHHHHHHHHHHHHH
Confidence 9999 8888888888888887664
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=173.87 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=155.3
Q ss_pred chHHHHHH---HccCCCCEEEEcCCCchhHHHHHhhhcCc------ccce---eEEEecCC----------CHHHHHHhh
Q 020548 2 SAISSVLM---QLCSSGGHVVAARTLYGGTHALLTHFFPR------ACNI---TTTFVDIS----------DHEMVNSAI 59 (324)
Q Consensus 2 ~ai~~~~~---~~~~~gd~vl~~~p~y~~~~~~~~~~~~~------~~g~---~~~~~~~~----------d~~~l~~~l 59 (324)
+|+..+++ +++++| +|++.+|+|+++.......... .++. .+..++.+ |++++++++
T Consensus 113 ~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l 191 (426)
T 1sff_A 113 EAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF 191 (426)
T ss_dssp HHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHH
Confidence 46777766 667776 8999999998754322111100 0110 13334432 688999988
Q ss_pred hc----CCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCcc
Q 020548 60 VQ----GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISK 123 (324)
Q Consensus 60 ~~----~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK 123 (324)
++ +++++|++++ ++| ||...+ +++|.++|+++|+++|+||+|+++.... .....|++ |+||
T Consensus 192 ~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK 268 (426)
T 1sff_A 192 KNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAK 268 (426)
T ss_dssp HHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECG
T ss_pred HhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcc
Confidence 42 5788888865 667 997766 9999999999999999999997664211 11235554 7899
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCC--C
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLG--L 199 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~--~ 199 (324)
++++ |.|+ ||+++++++++.+..... ....+.+....+.+...++.+. ...++..++++++.+.|++.+ .
T Consensus 269 ~~~~-Glri-G~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 342 (426)
T 1sff_A 269 SIAG-GFPL-AGVTGRAEVMDAVAPGGL----GGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKH 342 (426)
T ss_dssp GGGT-SSCC-EEEEEEHHHHTTSCTTSB----CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccC-CCce-EEEEEcHHHHhhhccCCc----CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9987 9997 999999888776653222 1112223222222221222221 244556777788888877642 1
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC--------CHHHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--------~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
...... .+.|.++++.+. .......+.+.+.. .|+ . +.|+.
T Consensus 343 ~~~~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~gi-~----------v~~~~ 391 (426)
T 1sff_A 343 PEIGDV-----------------RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD---KGL-I----------LLSCG 391 (426)
T ss_dssp TTEEEE-----------------EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH---TTE-E----------CEEES
T ss_pred CCeEEE-----------------EEEEEEEEEEEecCccccCCChHHHHHHHHHHHH---CCc-E----------EecCC
Confidence 110000 024779999984 23456677777664 233 1 12211
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
. .++++|+|++ ...+++.++.+.++|+++
T Consensus 392 ~---------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 392 P---------------YYNVLRILVP-LTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp T---------------TSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred C---------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 0 1478999998 666666666555555443
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=170.07 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=135.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+|+..+++++. +||+|++++|+|+++...+. ..|.++.+++.+ |++++++++ ++++++|+++ ||
T Consensus 78 ~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~ 147 (424)
T 2po3_A 78 AGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-----WIGLTPVFADIDPDTGNLDPDQVAAAV-TPRTSAVVGV---HL 147 (424)
T ss_dssp HHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTSSBCHHHHGGGC-CTTEEEEEEE---CG
T ss_pred HHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCcCCcCHHHHHHhh-CcCCcEEEEE---CC
Confidence 47788888764 79999999999999988773 368888887754 899999999 7789999985 48
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCc--cCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ 151 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~--~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~ 151 (324)
||...++++|.++|+++|+++|+|++|+ ++..+. .....|++++|+||..+.++++. ||++.+ +++++.+.....
T Consensus 148 tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~~~~-G~~v~~~~~l~~~l~~~~~ 226 (424)
T 2po3_A 148 WGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAFEG-GAVVTDDADLAARIRALHN 226 (424)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHHHHHHHHHHB
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccCCCC-eEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999995 454322 22225899999994333444684 999988 788888876544
Q ss_pred hhhh--c----c--CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 152 GALM--L----L--GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 152 ~~~~--~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
.... . . ...+.+..++..+..+..++...++..++++++.+.|++.
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 280 (424)
T 2po3_A 227 FGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADL 280 (424)
T ss_dssp TTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred cCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1100 0 0 1133455555544444455566666677788888888776
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-20 Score=166.21 Aligned_cols=282 Identities=12% Similarity=0.066 Sum_probs=181.4
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC--CceEEEEecCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~--~~~~v~~~~~~ 73 (324)
+|+..++.++ +++||+|+++.|+|+++...+. ..|.++.+++.+ |++++++++.+. ++++|++++
T Consensus 58 ~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~-- 130 (394)
T 1o69_A 58 AALHLALRVAGVKQDDIVLASSFTFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH-- 130 (394)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC--
T ss_pred HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC--
Confidence 5788889998 8999999999999999988874 268888888753 899999998332 789999885
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCcc---C-CCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPA---R-LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~---~-~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~ 147 (324)
|+|...++++|.++|+++|+++|+|++|+ ++..... . .+.|+..+|.+|.+++ .++ |+++.+ +++++.+.
T Consensus 131 -~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~--~~~-G~~~~~~~~l~~~l~ 206 (394)
T 1o69_A 131 -LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITT--SGG-GMLIGKNKEKIEKAR 206 (394)
T ss_dssp -GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC--SSC-EEEEESCHHHHHHHH
T ss_pred -CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCC--CCc-eEEEECCHHHHHHHH
Confidence 89999999999999999999999999995 5433221 1 1456666666888754 464 999985 78888887
Q ss_pred HhhhhhhhccCCC-----------CCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 148 DLHQGALMLLGPT-----------MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 148 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
....+. ....+. +....++..+..++.++..+++..++++++.+.|++. .++. +... ...
T Consensus 207 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~-~~~----- 277 (394)
T 1o69_A 207 FYSTQA-RENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-FSFL-DELE-NSR----- 277 (394)
T ss_dssp HHTBTC-CCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-EECC-CCCT-TEE-----
T ss_pred HHHHhc-cccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc-CCCC-CCc-----
Confidence 764411 001110 2334444443335667778888899999999999887 4332 2200 000
Q ss_pred HHhccCCCcceEEEEEeCCH---------------------HHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 217 SMANKEYGFGGLLCLDMETE---------------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~---------------------~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
....++++.++.. .+...+.+.|.. .|+ .++.|.... .+.|......
T Consensus 278 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~v~~~~~~~-~~~p~~~~~~ 345 (394)
T 1o69_A 278 -------SNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKN---KQI-ETRPLWKAM-HTQEVFKGAK 345 (394)
T ss_dssp -------CCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH---TTC-CCBCCCCCG-GGCGGGTTCE
T ss_pred -------ceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHH---cCC-cccccCCcc-ccchhhhccC
Confidence 0112577887632 256677777764 343 333332110 0011100000
Q ss_pred --CCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhcC
Q 020548 276 --ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 320 (324)
Q Consensus 276 --~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~~ 320 (324)
.+.-... ...+.+|+..+ ...++++++.+.++|+++.+.+
T Consensus 346 ~~~~~~~~~----~~~~~~~~~~~-~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 346 AYLNGNSEL----FFQKGICLPSG-TAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp EEECSHHHH----HHHHEEEECCC-TTCCHHHHHHHHHHHHHHHC--
T ss_pred CCCChHHHH----HhcCeEEccCC-CCCCHHHHHHHHHHHHHHHhcc
Confidence 0001100 01145666668 8888899999999998876544
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=168.35 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=133.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccc--eeEEEec--------------CCCHHHHHHhhhcCCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVD--------------ISDHEMVNSAIVQGRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g--~~~~~~~--------------~~d~~~l~~~l~~~~~~ 65 (324)
+|++.++.. +++||+|++++++|++.... ..... .| .++..++ ..|++++++++.+++++
T Consensus 62 ~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~ 137 (379)
T 3ke3_A 62 YGMEAVARQ-LTIDEDCLIIRNGWFSYRWT--QILEK-GKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSA 137 (379)
T ss_dssp HHHHHHHHH-HCTTCEEEEEECSHHHHHHH--HHHHH-HCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHh-CCCCCeEEEEeCCchhHHHH--HHHHH-hCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCc
Confidence 466666644 57999999999999875321 11111 33 2444443 25899999999445899
Q ss_pred EEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 66 VLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 66 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
+|++++++|++|.+.| +++|.++|+++|+++|+|+++++ ...+....++|+++.|+||+++++. .+ |+++.+++
T Consensus 138 ~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~-g~-g~~~~~~~ 215 (379)
T 3ke3_A 138 IVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGIDVLISAPQKGWSSTP-CA-GLVMLSAA 215 (379)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCC-CE-EEEEECHH
T ss_pred EEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCCEEEecchhhcCCCC-ce-EEEEECHH
Confidence 9999999999999999 99999999999999999999851 1122333489999999999997643 33 99999999
Q ss_pred HHHHHHHhhhh-h----------------h-hccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 142 LVNSMMDLHQG-A----------------L-MLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 142 ~~~~l~~~~~~-~----------------~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
+++.+...... . + .....++.....+.+...++ .++...+++.++++++.+.|++.+
T Consensus 216 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g 295 (379)
T 3ke3_A 216 AIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG 295 (379)
T ss_dssp HHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88877642110 0 0 00111333332222211111 245666777889999999999988
Q ss_pred CceeCC
Q 020548 199 LKVLYP 204 (324)
Q Consensus 199 ~~~~~p 204 (324)
+++..+
T Consensus 296 ~~~~~~ 301 (379)
T 3ke3_A 296 IESVAA 301 (379)
T ss_dssp CCBSBC
T ss_pred CEecCC
Confidence 765433
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-21 Score=170.74 Aligned_cols=267 Identities=15% Similarity=0.152 Sum_probs=167.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccce--eEEEecC------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||+|+++.|+|+++...+.. . ...|. ++..++. .|++++++++.+.++++|+++ ++
T Consensus 96 ~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~ 172 (405)
T 2vi8_A 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-V-NFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AA 172 (405)
T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCT-T-SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CS
T ss_pred HHHHHHHHHhcCCCCEEEEecccccchhcccch-h-hhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CC
Confidence 477888888899999999999999877431100 0 01232 5555542 289999999933378888874 44
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCc-CC-C--CccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-L--SPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~-~--~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
|. |...++++|.++|+++|+++|+|++|+. .. . .+... +.|++++|+||+++++. |||+++++++.+.+..
T Consensus 173 ~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~ 248 (405)
T 2vi8_A 173 AY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR---GGMILCQEQFAKQIDK 248 (405)
T ss_dssp SC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS---CEEEEECHHHHHHHHH
T ss_pred CC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCC---CeEEEEcHHHHHHHHh
Confidence 43 5667899999999999999999999852 11 1 11111 57899999999997433 4999999888888876
Q ss_pred hhhhhhhccCCCCCHHHHH-HHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 149 LHQGALMLLGPTMNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
..... ..++..+.+..+. .++.. ...++...+++.++++++.+.|++.+.++..|. +.
T Consensus 249 ~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~ 309 (405)
T 2vi8_A 249 AIFPG-IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG------------------TD 309 (405)
T ss_dssp HHTTT-TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CS
T ss_pred hhccc-ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCC------------------CC
Confidence 64311 1122222233222 12222 134566777889999999999999876655432 24
Q ss_pred ceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC----C
Q 020548 226 GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----G 300 (324)
Q Consensus 226 g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~----~ 300 (324)
++++++.++. ......+.+.+.. .|+ .+..|.. |.... ....++.+|+|++ . .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~---~gi-~v~~g~~------~~~~~-----------~~~~~~~iRis~~-~~~~~~ 367 (405)
T 2vi8_A 310 NHLLLVDLRPQQLTGKTAEKVLDE---VGI-TVNKNTI------PYDPE-----------SPFVTSGIRIGTA-AVTTRG 367 (405)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHH---HTE-ECEEECC------TTCSS-----------CTTTCSEEEEECH-HHHHTT
T ss_pred ceEEEEEccCCCCCHHHHHHHHHH---cCc-eeccCcC------ccccC-----------CCCCCCceEEeee-eeeecC
Confidence 6788999862 1134456665543 333 2222211 10000 0112467999999 5 2
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
.++++++.+.++|+++
T Consensus 368 ~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 368 FGLEEMDEIAAIIGLV 383 (405)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3355566666666554
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=172.89 Aligned_cols=265 Identities=11% Similarity=-0.031 Sum_probs=169.1
Q ss_pred hHHHHHHHccC--------CC-----CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCC
Q 020548 3 AISSVLMQLCS--------SG-----GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGR 63 (324)
Q Consensus 3 ai~~~~~~~~~--------~g-----d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~ 63 (324)
|+..++.++.. +| ++|++++ .|.++...++ ..|++++.++.+ |+++|++++ +++
T Consensus 115 a~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~-----~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~ 187 (452)
T 2dgk_A 115 ACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR-----YWDVELREIPMRPGQLFMDPKRMIEAC-DEN 187 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH-----HTTCEEEECCCBTTBCSCCHHHHHHHC-CTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH-----HcCceEEEEecCCCCCeECHHHHHHHH-hhC
Confidence 55566655543 55 5999999 9998888773 378888888763 899999999 788
Q ss_pred ceEEEEecCCCCcccccChHHHHHHHHhc------CCEEEEcCCCCcCCC----C--ccC---CCCcEEEeCCccccccC
Q 020548 64 TKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLVL----S--PAR---LGADVVVHSISKFISGG 128 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~~ivD~~~~~~~~----~--~~~---~~~d~~~~S~sK~~~~~ 128 (324)
+++|++++|+||||.+.|+++|.++|+++ |+++++|++|+++.. . +.. .++|+++.|+||++. .
T Consensus 188 t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~-~ 266 (452)
T 2dgk_A 188 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGL-A 266 (452)
T ss_dssp EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-C
T ss_pred CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccC-C
Confidence 99999999999999999999999999995 999999999965421 1 122 268999999999664 4
Q ss_pred CCeeEEEEEcC-hhHH-HHHHHhhhhhh----h--ccCCCCC--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHh
Q 020548 129 ADIIAGAVCGP-ANLV-NSMMDLHQGAL----M--LLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 129 g~r~~G~i~~~-~~~~-~~l~~~~~~~~----~--~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 196 (324)
+.++ |+++.+ ++++ +.+.....+.. . ..+.... ....+..+. +...+.+..++..++++++.+.|++
T Consensus 267 ~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 345 (452)
T 2dgk_A 267 PLGC-GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK 345 (452)
T ss_dssp CSSC-EEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCe-EEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6675 888765 4333 33321111000 0 0111122 112222222 2234567778889999999999999
Q ss_pred CC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH----HHHHHHHHHhhccccccccccccCCccceeccccc
Q 020548 197 LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 271 (324)
Q Consensus 197 ~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~----~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~ 271 (324)
.+ +++..|..+. ...+++.|.+++. .+...+.+.|.. .|+ .... ...|..
T Consensus 346 ~~~~~~~~~~~~~---------------~~~~~v~f~~~~~~~~~~~~~~l~~~L~~---~Gi---~v~~----~~~~~~ 400 (452)
T 2dgk_A 346 LGPYEFICTGRPD---------------EGIPAVCFKLKDGEDPGYTLYDLSERLRL---RGW---QVPA----FTLGGE 400 (452)
T ss_dssp TSSEEEEEECCTT---------------TBSSEEEEEECTTCCCSCCHHHHHHHHHH---TTC---BCCE----EECSTT
T ss_pred CCCeEEecCCCCC---------------CCeEEEEEEecCcccccCCHHHHHHHHHh---cCC---eeee----eeCCcc
Confidence 86 4555442100 1456889988742 123567777764 232 1111 111111
Q ss_pred cccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 272 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
. ...+.+|+|++ ..+++++++.+.++|+.+
T Consensus 401 ~--------------~~~~~lRis~~-~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 401 A--------------TDIVVMRIMCR-RGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp C--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred c--------------CCeEEEEEEec-CCCCHHHHHHHHHHHHHH
Confidence 0 01368999999 765566665555555443
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=171.22 Aligned_cols=191 Identities=14% Similarity=0.043 Sum_probs=129.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCc-hhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhcCCc-
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQGRT- 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y-~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~~~~- 64 (324)
+|+..++++++++|| +++.|+| +.+...+. ..|.++..++.+ |+++|++++ ++++
T Consensus 101 ~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~t~ 172 (456)
T 2ez2_A 101 GAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-----KNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLI-DEKGA 172 (456)
T ss_dssp HHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-----HTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHH-HHHCG
T ss_pred HHHHHHHHHhCCCCC--EeccccccchhHHHHH-----HcCCEEEEecccccccccccccccCCCCHHHHHHHH-Hhccc
Confidence 578888888899999 7889999 77666663 267777776432 789999998 4444
Q ss_pred ---eEEEEecCCC-CcccccC---hHHHHHHHHhcCCEEEEcCCCCc----------CCCCcc---------CCCCcEEE
Q 020548 65 ---KVLYFESISN-PTLAVAN---IPELSRLAHDKGVTVVVDNTFSP----------LVLSPA---------RLGADVVV 118 (324)
Q Consensus 65 ---~~v~~~~~~n-ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~----------~~~~~~---------~~~~d~~~ 118 (324)
++|++++|+| |||.+.+ +++|+++|+++|+++|+||+|+. +..... ....|+++
T Consensus 173 ~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~ 252 (456)
T 2ez2_A 173 ENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCT 252 (456)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEE
T ss_pred cceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEE
Confidence 8999999999 9999886 99999999999999999999943 222211 12368888
Q ss_pred eCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhh---hccCCCCCHHHH-HHHhcCcccH-HHHHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL---MLLGPTMNPKVA-FELSERIPHL-GLRMKEHCHRALIFAR 192 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~ 192 (324)
.|++|+++ ++ + +||+++ ++++++.+........ ...+.......+ +... ...+ +...++..++.+++.+
T Consensus 253 ~S~kk~~~-~~-~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~--~~~~~~~~~~~~~~~~~~l~~ 327 (456)
T 2ez2_A 253 MSGKKDCL-VN-I-GGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGL--REAMQYEYIEHRVKQVRYLGD 327 (456)
T ss_dssp EETTTTTC-CS-S-CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHH
T ss_pred EeCcccCC-CC-c-eeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 88899865 44 6 599988 6888888776543110 011111112222 1111 1222 3455566677788888
Q ss_pred HHHhCCCceeCCC
Q 020548 193 RMKKLGLKVLYPG 205 (324)
Q Consensus 193 ~L~~~~~~~~~p~ 205 (324)
.|++.+..+..|.
T Consensus 328 ~L~~~g~~~~~p~ 340 (456)
T 2ez2_A 328 KLKAAGVPIVEPV 340 (456)
T ss_dssp HHHHTTCCBCSSC
T ss_pred HHhcCCCccccCC
Confidence 8888665554444
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=172.33 Aligned_cols=262 Identities=10% Similarity=0.084 Sum_probs=160.3
Q ss_pred chHHHHHHHcc---C----CCCEEEEcCCCchhHHHHHhhhc-----------CcccceeEEEec---------CCCHHH
Q 020548 2 SAISSVLMQLC---S----SGGHVVAARTLYGGTHALLTHFF-----------PRACNITTTFVD---------ISDHEM 54 (324)
Q Consensus 2 ~ai~~~~~~~~---~----~gd~vl~~~p~y~~~~~~~~~~~-----------~~~~g~~~~~~~---------~~d~~~ 54 (324)
+|+..+++.+. + |||+|++++|.|+++........ +...+.....++ ..|+++
T Consensus 114 ea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 193 (429)
T 1s0a_A 114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence 35666666432 3 69999999999987544322110 000133333333 137899
Q ss_pred HHHhhhc--CCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeC
Q 020548 55 VNSAIVQ--GRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHS 120 (324)
Q Consensus 55 l~~~l~~--~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S 120 (324)
+++++.+ +++++|+++++ +||||.+.+ +++|+++|+++|+++|+||+|.++... . .....|++ |
T Consensus 194 l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t 271 (429)
T 1s0a_A 194 FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--C 271 (429)
T ss_dssp HHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--E
T ss_pred HHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--E
Confidence 9998832 57888888877 899998766 999999999999999999999665321 1 12346665 5
Q ss_pred CccccccCC-CeeEEEEEcChhHHHHHHHhhh----hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 121 ISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 121 ~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
+||.+++ | .|+ |++++++++++.+..... ...++.++.+.+.++..++..+.. +...++..++++++.+.|+
T Consensus 272 ~sK~l~~-G~~~i-G~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~L~ 348 (429)
T 1s0a_A 272 LGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-GDWQQQVADIEVQLREQLA 348 (429)
T ss_dssp ECGGGGT-SSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHG
T ss_pred ecccccC-CCccc-eEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 8899986 7 897 999999998888765310 000111122222222222221111 2345666778889999988
Q ss_pred hCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 196 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
+.+. .|.+. ...+.|.++++.++...+...+.+.+.. .|+.. .+
T Consensus 349 ~l~~---~~~~~-------------~~~~~g~~~~~~~~~~~~~~~l~~~l~~---~Gi~v-----------~~------ 392 (429)
T 1s0a_A 349 PARD---AEMVA-------------DVRVLGAIGVVETTHPVNMAALQKFFVE---QGVWI-----------RP------ 392 (429)
T ss_dssp GGGG---CTTEE-------------EEEEETTEEEEEESSCBCHHHHHHHHHH---TTEEC-----------CC------
T ss_pred HHhc---CCCEE-------------EEEEeeEEEEEEECCcccHHHHHHHHHH---CCCEE-----------ec------
Confidence 7521 11110 0002466899998742234556666653 23311 11
Q ss_pred CCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 276 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
.++++|+|++ ...++++++.+.++|+.+-
T Consensus 393 ------------~~~~iRis~~-~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 393 ------------FGKLIYLMPP-YIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp ------------BTTEEEECCC-TTCCHHHHHHHHHHHHHHT
T ss_pred ------------cCCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 0268999998 7777777777777776653
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=175.90 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=97.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--C---------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--S---------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--~---------d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|+..++++++++||+|+++.|+|+++...+. ..|.++.+++. + |++++ . .+++++|+++
T Consensus 83 ~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~-~~~~~~v~~~ 153 (446)
T 2x3l_A 83 SGILSVIQSFSQKKGDILMARNVHKSVLHALD-----ISQQEGHFIETHQSPLTNHYNKVNLSRL---N-NDGHKLVVLT 153 (446)
T ss_dssp HHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH-----HHTCCEEECEEEECTTTSSEEEEEC-----------CCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCccHHHHHHHH-----HcCCeEEEEeCeeccccCcCCCCCHHHH---c-CCCceEEEEE
Confidence 47888888889999999999999999988874 25666666554 2 45565 3 6789999999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCC-----CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~-----~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
+ .|++|.+.|+++|+++|+++|+++|+|++|+. +.+ +....++|++++|+||+++++ .. +|+++.++++++
T Consensus 154 ~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~-~g-~g~l~~~~~~i~ 230 (446)
T 2x3l_A 154 Y-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPAL-TM-GSVLYIHKNAPY 230 (446)
T ss_dssp S-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSC-TT-CEEEEEETTCTT
T ss_pred C-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccccccc-cc-cEEEEEcCCcCC
Confidence 9 56699999999999999999999999999854 311 223447899999999966543 23 499988776644
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=171.12 Aligned_cols=247 Identities=12% Similarity=0.074 Sum_probs=162.4
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhh-hc---CCceEEEEecCCCCcccccC
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAI-VQ---GRTKVLYFESISNPTLAVAN 81 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l-~~---~~~~~v~~~~~~nptG~~~~ 81 (324)
+|+.|++++++|+++...++ ..|++++.++. .|++++++++ .. .++.+|++++++||||.+.|
T Consensus 175 ~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~ 249 (456)
T 2z67_A 175 GSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD 249 (456)
T ss_dssp CCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC
T ss_pred CCCEEEEECCCcHHHHHHHH-----HcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC
Confidence 67889999999999887773 26888877764 2899999998 32 47788888999999999999
Q ss_pred hHHHHHHHHhcCCEEEEcCCCCcCCC--Ccc---CC--CCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhh
Q 020548 82 IPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RL--GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA 153 (324)
Q Consensus 82 ~~~i~~l~~~~~~~~ivD~~~~~~~~--~~~---~~--~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~ 153 (324)
+++|.++|+++|+++++|++|+.+.. .+. .. ++|++++|+||++++ +.++ |+++. ++++++.+.+...
T Consensus 250 l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~-p~g~-G~l~~~~~~~~~~l~~~~~-- 325 (456)
T 2z67_A 250 IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLT-PIGG-GLVYSTDAEFIKEISLSYP-- 325 (456)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCC-CSSC-EEEEESCHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCC-CCCe-EEEEEcCHHHHhhcCcCCC--
Confidence 99999999999999999999854432 111 11 789999999998755 3564 99987 5778777743322
Q ss_pred hhccCCC-CC-HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC----CCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 154 LMLLGPT-MN-PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 154 ~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
+.. .. ....+..+. +...++...++..++++++.+.|++. +..+..|.
T Consensus 326 ----g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-------------------- 381 (456)
T 2z67_A 326 ----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-------------------- 381 (456)
T ss_dssp ----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--------------------
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--------------------
Confidence 211 11 222222222 22345566777889999999999987 54433221
Q ss_pred ceEEEEEe--CCHHHHHHHHHHhhccccccccccccC---CccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC
Q 020548 226 GGLLCLDM--ETEEKANRLMNYLQNYAQFGFMAVSLG---YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 300 (324)
Q Consensus 226 g~~~~~~l--~~~~~~~~~~~~l~~~~~~g~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~ 300 (324)
++++|.+ ++. ...+.+.|.. .|+.++... +... ..++. ....+++|+|++ ..
T Consensus 382 -~~v~~~~~~~~~--~~~l~~~L~~---~gi~~~rv~~~~g~f~-G~~~~---------------~~~~~~vr~s~~-~~ 438 (456)
T 2z67_A 382 -SPIASCISVNSD--PVEIAAKLYN---LRVTGPRGIKKTDHFG-NCYLG---------------TYTHDYIVMNAA-IG 438 (456)
T ss_dssp -CSSEEEEECSSC--HHHHHHHHHH---TTEESCEEECTTCHHH-HTCSS---------------CCSCCEEEEECC-TT
T ss_pred -CeEEEEEecccH--HHHHHHHHHH---cCCCcceEEeecCccc-ccccc---------------ccCcchhhhhhh-cC
Confidence 3567777 542 2344454442 121010000 0000 00111 112478999999 88
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
+++++++.+.++|+++
T Consensus 439 ~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 439 VRTEDIVNSVSKLEKI 454 (456)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888888754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=169.53 Aligned_cols=251 Identities=16% Similarity=0.131 Sum_probs=153.9
Q ss_pred chHHHHHHHccC-CCCEEEEcCCCchhHHHHHhhhcCc------c---cceeEEEecCC---------------------
Q 020548 2 SAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPR------A---CNITTTFVDIS--------------------- 50 (324)
Q Consensus 2 ~ai~~~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~~~~------~---~g~~~~~~~~~--------------------- 50 (324)
+|+..+++.+.. +||+|++++|.|++........... . ....+..++.+
T Consensus 115 ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~ 194 (419)
T 2eo5_A 115 EAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR 194 (419)
T ss_dssp HHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHH
Confidence 467777765443 3899999999998644432211100 0 11234444332
Q ss_pred CHHHHH-Hhhhc----CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCC
Q 020548 51 DHEMVN-SAIVQ----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA 114 (324)
Q Consensus 51 d~~~l~-~~l~~----~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~ 114 (324)
|+++++ +++.+ +++++|++++.+||||...+ +++|+++|+++|+++|+||+|.++.... .....
T Consensus 195 ~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~ 274 (419)
T 2eo5_A 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVP 274 (419)
T ss_dssp HHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCC
Confidence 367888 88842 46778887777788998665 8999999999999999999997664211 12245
Q ss_pred cEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Q 020548 115 DVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 193 (324)
Q Consensus 115 d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (324)
|++ |+||.+++ | .|+ ||++++++++ .+ .... ..++.++.+.+.++..++ +......++..++++++.+.
T Consensus 275 d~~--t~sK~~~~-G~~ri-G~~~~~~~~~-~~-~~~~-~~t~~~n~~~~~aa~aal---~~~~~~~~~~~~~~~~l~~~ 344 (419)
T 2eo5_A 275 DVI--TLAKALGG-GIMPI-GATIFRKDLD-FK-PGMH-SNTFGGNALACAIGSKVI---DIVKDLLPHVNEIGKIFAEE 344 (419)
T ss_dssp SEE--EECGGGGT-TTSCC-EEEEEEGGGC-CC--------CCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CEE--EecccccC-Cccce-EEEEEchHhh-cC-Cccc-CCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 655 69999986 8 997 9999988877 55 3111 111222222222222222 23333566678889999999
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceecccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 272 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~ 272 (324)
|++. .... + +.|.++++++. +..... +.+.+.. .|+.. .|.
T Consensus 345 L~~~-~~~~-~-------------------~~g~~~~i~~~~~~~~~~-~~~~l~~---~Gv~v-----------~~~-- 386 (419)
T 2eo5_A 345 LQGL-ADDV-R-------------------GIGLAWGLEYNEKKVRDR-IIGESFK---RGLLL-----------LPA-- 386 (419)
T ss_dssp HTTS-SSEE-E-------------------EETTEEEEECSCHHHHHH-HHHHHHH---TTEEC-----------EEE--
T ss_pred HHHh-hhhe-E-------------------eeeEEEEEEEecCccHHH-HHHHHHH---CCCEE-----------ecC--
Confidence 9775 2111 1 25778899984 223345 7776653 33311 111
Q ss_pred ccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 273 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ++++|+|++ ...+++.++.+.++|+++
T Consensus 387 -------------~--~~~lRis~~-~~~t~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 387 -------------G--RSAIRVIPP-LVISEEEAKQGLDILKKV 414 (419)
T ss_dssp -------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1 378999998 666666666666666544
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=172.19 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=136.6
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcc----------cceeEEEecCC----------CHHHHHHhh
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRA----------CNITTTFVDIS----------DHEMVNSAI 59 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~----------~g~~~~~~~~~----------d~~~l~~~l 59 (324)
+|+..+++.+ ..++++|++.++.|++............ ....+..++.+ |+++|++++
T Consensus 115 ea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 194 (439)
T 3dxv_A 115 DANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKL 194 (439)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHH
Confidence 4666677664 3356889999999876554332111000 00011233333 589999988
Q ss_pred h---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC----c---cCCCCcEEEeCCcccc
Q 020548 60 V---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS----P---ARLGADVVVHSISKFI 125 (324)
Q Consensus 60 ~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~----~---~~~~~d~~~~S~sK~~ 125 (324)
+ .+++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+++... . .....|++ |+||.+
T Consensus 195 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~ 272 (439)
T 3dxv_A 195 AAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGL 272 (439)
T ss_dssp HTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGG
T ss_pred HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchh
Confidence 4 457899999999999999987 999999999999999999999765321 1 12245666 799999
Q ss_pred ccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhC----CC
Q 020548 126 SGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKL----GL 199 (324)
Q Consensus 126 ~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~ 199 (324)
++ |+|+ ||+++++++++.+..... ..++ ..+...+.+...++.+ +...++..++++++.+.|++. +.
T Consensus 273 ~~-G~ri-G~~~~~~~~~~~~~~~~~-~~t~----~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 345 (439)
T 3dxv_A 273 GG-GLPL-SAVIAPAEILDCASAFAM-QTLH----GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPL 345 (439)
T ss_dssp GT-TSCC-EEEEEEHHHHTSCSSSSC-CTTT----TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cC-Ccce-EEEEECHHHHhhhcCCCc-CCCc----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 86 8997 999999988877755432 1112 2222222222222211 234455566666666666653 32
Q ss_pred ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe--------CCHHHHHHHHHHhhc
Q 020548 200 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM--------ETEEKANRLMNYLQN 248 (324)
Q Consensus 200 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l--------~~~~~~~~~~~~l~~ 248 (324)
....+ +.|.++++.+ +.......+.+.+..
T Consensus 346 ~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (439)
T 3dxv_A 346 IGDIR-------------------GRGLACGMELVCDRQSREPARAETAKLIYRAYQ 383 (439)
T ss_dssp EEEEE-------------------EETTEEEEEEEEETTTTEECHHHHHHHHHHHHH
T ss_pred eEEEE-------------------EEEEEEEEEEecCccccCCCHHHHHHHHHHHHH
Confidence 11111 2577888887 445556777777664
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=171.18 Aligned_cols=263 Identities=12% Similarity=0.104 Sum_probs=157.0
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhh---------cCcccceeEEEecC------C---------CHHHH
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF---------FPRACNITTTFVDI------S---------DHEMV 55 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~~~~~~~~------~---------d~~~l 55 (324)
+|+..+++.+. ..+|+|++.+|.|++........ .+...|+....++. . |++++
T Consensus 113 ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l 192 (433)
T 1zod_A 113 ESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYA 192 (433)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHH
Confidence 46677766532 23589999999998754432211 11112444443321 1 38999
Q ss_pred HHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-c------cCCCCcEEEeCC
Q 020548 56 NSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-P------ARLGADVVVHSI 121 (324)
Q Consensus 56 ~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-~------~~~~~d~~~~S~ 121 (324)
++++++ +++++|++++++||||...+ +++|+++|++||+++|+||+|+++... . .....|++ |+
T Consensus 193 e~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~ 270 (433)
T 1zod_A 193 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TL 270 (433)
T ss_dssp HHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EE
T ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--Ee
Confidence 998843 57888888877899997655 999999999999999999999766421 1 12235554 78
Q ss_pred ccccccCCCeeEEEEEcChhHHHHHHHhhhhh-hhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC---
Q 020548 122 SKFISGGADIIAGAVCGPANLVNSMMDLHQGA-LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL--- 197 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 197 (324)
||.+++ |.|+ ||+++++++++.+....... .++.++.+.+.++..++..+.. +...++..++++++.+.|++.
T Consensus 271 sK~~~~-G~~i-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~ 347 (433)
T 1zod_A 271 SKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGLVARANVMGDRLRRGLLDLMER 347 (433)
T ss_dssp CHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccC-CCCe-eEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987 8997 99999999988887632100 1122222222222222221111 234455677777787777664
Q ss_pred -CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--------HHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 198 -GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 198 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
+.....+ +.|.++++++.. ......+.+.+.. .|++ +.
T Consensus 348 ~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~---~Gv~-----------v~ 394 (433)
T 1zod_A 348 FDCIGDVR-------------------GRGLLLGVEIVKDRRTKEPADGLGAKITRECMN---LGLS-----------MN 394 (433)
T ss_dssp CTTEEEEE-------------------EETTEEEEEEEEETTTTEECTTHHHHHHHHHHH---TTEE-----------CC
T ss_pred CCCeEEEE-------------------EEEEEEEEEEecCccccCCChHHHHHHHHHHHH---CCCe-----------Ee
Confidence 2210111 257788988752 1235667776653 3331 12
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
|+..+ + .++++|+|++ ...+++.++.+.++|+.+
T Consensus 395 ~~~~~------------~-~~~~lRi~~~-~~~t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 395 IVQLP------------G-MGGVFRIAPP-LTVSEDEIDLGLSLLGQA 428 (433)
T ss_dssp EECCT------------T-SCCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ccCCC------------C-CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 21110 1 1378999988 666666666555555443
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=166.59 Aligned_cols=262 Identities=9% Similarity=0.007 Sum_probs=158.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHH-HHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHA-LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~-~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
+|+..++++++++| .+++..+.|..... ... ..+ .|.++..++.++-......+ ++++++|++++++||||.+.
T Consensus 108 ~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~-~~~--~g~~~~~v~~~~g~~~~~~i-~~~~~~v~~~~~~nptG~~~ 182 (398)
T 2fyf_A 108 AFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVS-KNP--FVGEPIIITSDPGSAPEPQT-DPSVDVIAWAHNETSTGVAV 182 (398)
T ss_dssp HHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHH-HCT--TSCCCEEEECCTTCCCCCCC-CTTCSEEEEESEETTTTEEC
T ss_pred HHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHH-HhC--CCCceEEEecCCCCCCCccc-cCCCCEEEEeCcCCCcceec
Confidence 57888999988887 23334444432111 121 111 25666666543100000124 67899999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh---------
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--------- 150 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~--------- 150 (324)
|+++|.++ +|+++|+|++|+.+.. +.+. +.|++++|+||+++++| ++ ||++.++++++.+....
T Consensus 183 ~~~~i~~~---~~~~vivD~a~~~~~~-~~~~~~~di~~~s~sK~~~~~g-g~-g~l~~~~~~~~~l~~~~~~~~~~~~~ 256 (398)
T 2fyf_A 183 AVRRPEGS---DDALVVIDATSGAGGL-PVDIAETDAYYFAPQKNFASDG-GL-WLAIMSPAALSRIEAIAATGRWVPDF 256 (398)
T ss_dssp CCCCCTTC---C-CEEEEECTTTTTTS-CCCGGGCSEEEECTTSTTCSCS-SE-EEEEECHHHHHHHHHHHHTTCCCCGG
T ss_pred chHHhhhh---cCCeEEEEeccccCCc-ccCcccCcEEEEecCcccCCCC-ce-EEEEECHHHHHHhhcccccCCCCCcE
Confidence 99988877 8999999999854332 2222 47999999999998874 46 99999999888775421
Q ss_pred -hhh---h----hccCCCCCHHH---HHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHH
Q 020548 151 -QGA---L----MLLGPTMNPKV---AFELSERIP---HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 151 -~~~---~----~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~ 215 (324)
.+. . .....++.... +..++..+. .++...+++.++++++.+.|++. +.++..+. +.
T Consensus 257 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~---- 328 (398)
T 2fyf_A 257 LSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTD----PG---- 328 (398)
T ss_dssp GCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCS----GG----
T ss_pred EehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCC----hh----
Confidence 000 0 01112233221 122222211 15566777889999999999998 44544211 00
Q ss_pred HHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 216 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
...+.++++.++...+...+.+.|.. .|+ .+..| .. ...++++|+|
T Consensus 329 -------~~~~~~~~~~~~~~~~~~~l~~~L~~---~gI-~v~~g----------~~-------------~~~~~~iRis 374 (398)
T 2fyf_A 329 -------LRSQVVGTIDFVDDVDAGTVAKILRA---NGI-VDTEP----------YR-------------KLGRNQLRVA 374 (398)
T ss_dssp -------GBCSSEEEEEECTTSCHHHHHHHHHH---TTC-BCCSC----------CT-------------TTCSSEEEEE
T ss_pred -------hcCCcEEEEECCCCCCHHHHHHHHHH---CCc-EEecC----------cc-------------cCCCCEEEEE
Confidence 01234899999633345667777664 233 21111 00 1124789999
Q ss_pred eccCCCHHHHHHHHHHHHHhhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++ ..+++++++.+.++|+++-
T Consensus 375 ~~-~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 375 MF-PAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp CC-TTSCHHHHHHHHHHHHHHH
T ss_pred ec-CCCCHHHHHHHHHHHHHHH
Confidence 99 8777888888887776653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=166.57 Aligned_cols=144 Identities=11% Similarity=0.094 Sum_probs=95.5
Q ss_pred chHHHHHHHcc--------CCCCEEEEcCCCchhHHHHHhhhcCcc-----c---ce--eEEEecCC--------CHHHH
Q 020548 2 SAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPRA-----C---NI--TTTFVDIS--------DHEMV 55 (324)
Q Consensus 2 ~ai~~~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~~~~~-----~---g~--~~~~~~~~--------d~~~l 55 (324)
+|+..+++.++ .++|+|++.+|.|+++........... + .. .+..++.+ |+++|
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGL 179 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHH
Confidence 45777777665 347899999999998764332111000 0 00 22333333 44888
Q ss_pred HHhhhc---CCceEEEEecCCC-CcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------cc-CCCCcEEEe
Q 020548 56 NSAIVQ---GRTKVLYFESISN-PTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PA-RLGADVVVH 119 (324)
Q Consensus 56 ~~~l~~---~~~~~v~~~~~~n-ptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~-~~~~d~~~~ 119 (324)
++++++ +++++|++++++| ++|...+ +++|+++|+++|+++|+||+|.++... .. ....|++
T Consensus 180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~-- 257 (430)
T 3i4j_A 180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIA-- 257 (430)
T ss_dssp HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEE--
T ss_pred HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEE--
Confidence 888842 5678888888888 9998766 899999999999999999999766321 11 2235555
Q ss_pred CCccccccCC-CeeEEEEEcChhHHHHHHHh
Q 020548 120 SISKFISGGA-DIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 120 S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~ 149 (324)
++||.+++ | +|+ ||+++++++++.+...
T Consensus 258 t~sK~l~~-G~~r~-G~~~~~~~i~~~~~~~ 286 (430)
T 3i4j_A 258 VLGKGLAA-GYAPL-AGLLAAPQVYETVMGG 286 (430)
T ss_dssp EECGGGTT-TSSCC-EEEEECHHHHHHHHHT
T ss_pred EEcccccC-Ccccc-EEEEECHHHHHHHhcc
Confidence 48899986 8 997 9999999999998864
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-20 Score=168.75 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=165.3
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhcCC------ceEEEEecCCCCcccc
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAV 79 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~~~------~~~v~~~~~~nptG~~ 79 (324)
+++.|+++.+.|.++...++ ..|. +++.++.+ |+++|++++ +++ +++|++++++|++|.+
T Consensus 191 ~~~~v~~s~~~H~s~~~~~~-----~~g~g~~~~~~v~~d~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~~~~G~v 264 (511)
T 3vp6_A 191 PKLVLFTSEQSHYSIKKAGA-----ALGFGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAF 264 (511)
T ss_dssp CCEEEEEETTSCTHHHHHHH-----HTTSCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCSSSCCB
T ss_pred CCeEEEECCCchHHHHHHHH-----HcCCCCCcEEEeecCCCCccCHHHHHHHH-HHHHhcCCCcEEEEEecCCCCCccc
Confidence 57799999999999998884 2454 67777654 899999999 433 8899999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCCc-CCCCc-c------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFSP-LVLSP-A------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~-~------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
.|+++|+++|+++|+++++|++|++ ....+ . ..++|+++.++||++++|... +++++.++++.........
T Consensus 265 d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~ 343 (511)
T 3vp6_A 265 DPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC-SAILVKEKGILQGCNQMHA 343 (511)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCC-EEEEESSTTHHHHHHCCCC
T ss_pred ccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCe-EEEEEeCHHHHHHHhccCC
Confidence 9999999999999999999999944 32222 0 115799999999999876444 3455666666665432111
Q ss_pred hhhh-----------------ccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCch
Q 020548 152 GALM-----------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPH 211 (324)
Q Consensus 152 ~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~ 211 (324)
.+.. ..+........+..+. +...+++++++..++++++.+.|++. ++++..+.-
T Consensus 344 ~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~----- 418 (511)
T 3vp6_A 344 SYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE----- 418 (511)
T ss_dssp TTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSC-----
T ss_pred ccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC-----
Confidence 1100 0111123343444332 33456788888999999999999987 446554210
Q ss_pred hHHHHHHhccCCCcceEEEEEeCCHH----------------HHHHHHHHhhccccccccccccCCccceeccccccccC
Q 020548 212 HELLKSMANKEYGFGGLLCLDMETEE----------------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 275 (324)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~~~l~~~~----------------~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 275 (324)
...++++|.+.+.. ....+.+.|.. .|.+.++ ..+.
T Consensus 419 ------------p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~G~~~~~--------~~~~----- 470 (511)
T 3vp6_A 419 ------------PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME---SGTTMVG--------YQPQ----- 470 (511)
T ss_dssp ------------CSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH---HTSCEEE--------EEEE-----
T ss_pred ------------CCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh---cCCEEEE--------EEEe-----
Confidence 12446777653211 12345555553 2221111 0000
Q ss_pred CCCHHHHHhcCCCCCeEEEEe-ccCCCHHHHHHHHHHHHHhhhh
Q 020548 276 ELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 276 ~~~~~~~~~~~~~~~~iR~s~-g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
+...+++|+++ + ..++.++++.+.++++++.+
T Consensus 471 ----------~~~~~~lRi~~~~-~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 471 ----------GDKANFFRMVISN-PAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp ----------TTEEEEEEECCCC-TTCCHHHHHHHHHHHHHHHC
T ss_pred ----------CCceEEEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 11125799999 5 66777888888888877754
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=167.60 Aligned_cols=191 Identities=20% Similarity=0.241 Sum_probs=132.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCccc--ceeEEEecC------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC--NITTTFVDI------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~--g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.++++|||+|++++|+|+++...... . ... +..+.+++. .|++++++++.+.++++|++++++
T Consensus 118 ~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~ 195 (447)
T 3h7f_A 118 QANAAVLHALMSPGERLLGLDLANGGHLTHGMR-L-NFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSA 195 (447)
T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCT-T-SHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSS
T ss_pred HHHHHHHHHhcCCCCEEEecCcccccccchhhh-h-hhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCC
Confidence 467888888999999999999999773211100 0 001 223334432 389999999855678999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-CcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||++. ++++|+++|+++|+++|+|++| .++. ..+.. ++|+++.|+||+++ |++ +|++++++++.+.+.
T Consensus 196 ~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~-~~di~~~s~sK~l~--G~~-gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 196 YPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVP-HADVVSTTVHKTLG--GGR-SGLIVGKQQYAKAIN 269 (447)
T ss_dssp CCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSGGGC--CCS-CEEEEECGGGHHHHH
T ss_pred CCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCC-CCcEEEecCCcCCC--CCC-eEEEEECHHHHHHHh
Confidence 98876 9999999999999999999997 3321 22232 57999999999985 456 599999999988887
Q ss_pred HhhhhhhhccCCCCCH--HHHHHHhc-Ccc-cHHHHHHHHHHHHHHHHHHHHhC-----CCcee
Q 020548 148 DLHQGALMLLGPTMNP--KVAFELSE-RIP-HLGLRMKEHCHRALIFARRMKKL-----GLKVL 202 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~ 202 (324)
....+. ..++.... .++..++. ... .++.+.++..++++++.+.|++. ++.+.
T Consensus 270 ~~~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~ 331 (447)
T 3h7f_A 270 SAVFPG--QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVV 331 (447)
T ss_dssp HHHTTT--TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEG
T ss_pred hhcCCc--ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEe
Confidence 664421 22222222 12222222 222 45677788899999999999887 66543
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=163.14 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHh----hhcCcccce--eEEEec------CCCHHHHHHhhhcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLT----HFFPRACNI--TTTFVD------ISDHEMVNSAIVQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~----~~~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~v~~ 69 (324)
+|+..++.++++|||+|++.++.|.++..... ... ...|. .+.+++ ..|++++++++...++++|++
T Consensus 131 ~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i-~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~ 209 (490)
T 2a7v_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRI-SATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHHHCCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCCEecccCccccccccchhhhcchhH-HHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEE
Confidence 47888899999999999999999976532110 000 11232 222332 128999999984457899998
Q ss_pred ecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChh--
Q 020548 70 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-- 141 (324)
Q Consensus 70 ~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-- 141 (324)
+.++|| ...|+++|+++|+++|+++++|+++ .++ ...+.. ++|++++|+||++++| + ||+++++++
T Consensus 210 ~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp--~-GG~i~~~~~~~ 283 (490)
T 2a7v_A 210 GTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA--R-SGLIFYRKGVK 283 (490)
T ss_dssp CCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC--S-CEEEEEECSEE
T ss_pred cCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc--c-chheeeccchh
Confidence 888886 4679999999999999999999997 332 123443 6899999999998654 4 699987653
Q ss_pred -------------HHHHHHHhhhhhhhccCCCCCHHHHHH-HhcCc--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 142 -------------LVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 142 -------------~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
+.+.++.... .+...++.+...++.. ++... ..+.++.++..++++++.+.|++.|+++..+.
T Consensus 284 ~~~~~~~~~~~~~l~~~i~~~~~-~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~ 362 (490)
T 2a7v_A 284 AVDPKTGREIPYTFEDRINFAVF-PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGG 362 (490)
T ss_dssp EEETTTEEEEECCCHHHHHHHHT-TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred cccccccchhhHHHHHHHHHHhc-ccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCC
Confidence 5566665433 1112222222222211 11111 23456777889999999999999988664322
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeCCH-HHHHHHHHHhh
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 247 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~l~ 247 (324)
....++++.+.+. .....+.+.|.
T Consensus 363 ------------------t~t~lv~vdl~~~g~~~~~~~~~L~ 387 (490)
T 2a7v_A 363 ------------------TDNHLVLVDLRPKGLDGARAERVLE 387 (490)
T ss_dssp ------------------CSSSEEEEECTTTTCCHHHHHHHHH
T ss_pred ------------------CCCeEEEEEeCCCCCCHHHHHHHHH
Confidence 1245788888631 12344445554
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=154.39 Aligned_cols=273 Identities=15% Similarity=0.113 Sum_probs=171.5
Q ss_pred chHHHHHHHc-------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEE
Q 020548 2 SAISSVLMQL-------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLY 68 (324)
Q Consensus 2 ~ai~~~~~~~-------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~ 68 (324)
+|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+ |++++++++ ++++++|+
T Consensus 60 ~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~ 133 (390)
T 3b8x_A 60 TANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-----QYGLRVKFVDIDINTLNIDIESLKEAV-TDSTKAIL 133 (390)
T ss_dssp HHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTTCSBCHHHHHHHC-CTTEEEEE
T ss_pred HHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCccccCcCHHHHHHHh-CcCCeEEE
Confidence 4678888887 7899999999999999998874 268888887754 899999999 77899999
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCCccCCCC--cEEEeCC--ccccccCCCeeEEEEEcCh-hH
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHSI--SKFISGGADIIAGAVCGPA-NL 142 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~~~~~~~--d~~~~S~--sK~~~~~g~r~~G~i~~~~-~~ 142 (324)
++ |++|...++++|.++|+++|+++|+|++|+ +...+....+. |+.+.|+ +|.+++ ++ ||+++.++ ++
T Consensus 134 ~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~--g~-gG~~~~~~~~l 207 (390)
T 3b8x_A 134 TV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIAT--ME-GGCIVTDDEEI 207 (390)
T ss_dssp EE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS--SS-CEEEEESCHHH
T ss_pred EE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCCCcc--CC-ceEEEeCCHHH
Confidence 87 467888999999999999999999999995 43333334444 5555443 344432 23 58888765 67
Q ss_pred HHHHHHhhhhhh-h------------------------ccCC--CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q 020548 143 VNSMMDLHQGAL-M------------------------LLGP--TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 195 (324)
Q Consensus 143 ~~~l~~~~~~~~-~------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 195 (324)
.+.+.....+.. . ..|. .+....++..+..++.++...++..++++++.+.|+
T Consensus 208 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~ 287 (390)
T 3b8x_A 208 YHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPRFISVRRKNAEYFLDKFK 287 (390)
T ss_dssp HHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777766443110 0 0111 144555555444456667777778899999999998
Q ss_pred hCC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhcccccccccccc---CCccceeccc
Q 020548 196 KLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSL---GYYETLMSCS 269 (324)
Q Consensus 196 ~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~---g~~~~~~~~~ 269 (324)
+.+ .++..+. .. .....+++.++. ..+...+.+.|.. .|+ .++. |..+.. +|
T Consensus 288 ~~~~~~~~~~~--~~--------------~~~~~~~i~~~~~~~~~~~~l~~~L~~---~gI-~v~~~~~~~~~~~--~~ 345 (390)
T 3b8x_A 288 DHPYLDVQQET--GE--------------SSWFGFSFIIKKDSGVIRKQLVENLNS---AGI-ECRPIVTGNFLKN--TD 345 (390)
T ss_dssp TCSSEEECCCC--SB--------------CCCCEEEEEECTTSCCCHHHHHHHHHH---TTB-CCBCSTTSSGGGC--HH
T ss_pred CCCCcccCCCC--CC--------------cccEEEEEEecCcCcccHHHHHHHHHH---CCC-CeeeecCCchhhc--ch
Confidence 874 3433221 00 112246666652 1234556666653 343 2222 111111 01
Q ss_pred ccc--cc---CCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 270 GSS--TS---SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 270 ~~~--~~---~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
... .+ ...+.... ...+.+|++++ ...++++++.+.++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~----~~~~~l~l~~~-~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 346 VLKYFDYTVHNNVDNAEY----LDKNGLFVGNH-QIELFDEIDYLREVL 389 (390)
T ss_dssp HHTTCEEEESSCCHHHHH----HHHHEEEEECC-SSCCHHHHHHHHHHT
T ss_pred hhhcCCCCCcCCChHHHH----HhcCEEEeeCC-CCCCHHHHHHHHHhh
Confidence 000 00 00100111 11367999999 998998888887765
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-19 Score=161.37 Aligned_cols=261 Identities=10% Similarity=0.105 Sum_probs=159.2
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHH-HHhh---------hcCcccceeEEEecC--------CC----
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHA-LLTH---------FFPRACNITTTFVDI--------SD---- 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~-~~~~---------~~~~~~g~~~~~~~~--------~d---- 51 (324)
+|+..+++++.. +||+|++.+|.|++... .+.. +.+...++....++. .|
T Consensus 121 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~ 200 (449)
T 3a8u_X 121 ECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG 200 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHH
Confidence 467777776543 67999999999987543 2211 011112344333322 14
Q ss_pred ----HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC
Q 020548 52 ----HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG 113 (324)
Q Consensus 52 ----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~ 113 (324)
+++|++++++ +++++|++++.+|+||.+.+ +++|+++|++||+++|+||+|.++.... ....
T Consensus 201 ~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~ 280 (449)
T 3a8u_X 201 GIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVT 280 (449)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCC
Confidence 8999999842 57788888887888999887 9999999999999999999996664211 1224
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh----h-hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----G-ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCH 185 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 185 (324)
.|++ |+||.+++ | .|+ |+++.++++++.+..... . .......+..+..++.+...++.+. ...++..+
T Consensus 281 ~di~--s~sK~l~~-G~~~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~ 356 (449)
T 3a8u_X 281 PDLM--CIAKQVTN-GAIPM-GAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAE 356 (449)
T ss_dssp CSEE--EECGGGGT-TSSCC-EEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCEE--EEcccccC-CCCce-EEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5766 78899986 6 897 999888888888765310 0 0001112223333322222222222 35566788
Q ss_pred HHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHH-----HHHHHHHHhhcccccccccccc
Q 020548 186 RALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-----KANRLMNYLQNYAQFGFMAVSL 259 (324)
Q Consensus 186 ~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-----~~~~~~~~l~~~~~~g~~~~~~ 259 (324)
+++++.+.|++.+ ..... ...+.|.+++++++... ....+.+.+.. .|++
T Consensus 357 ~~~~l~~~L~~l~~~~~~~-----------------~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~---~Gv~---- 412 (449)
T 3a8u_X 357 VAPHFEKALHGIKGAKNVI-----------------DIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWK---AGFY---- 412 (449)
T ss_dssp HHHHHHHHHHTTTTSTTEE-----------------EEEEETTEEEEEECCBTTBSSHHHHHHHHHHHH---HTEE----
T ss_pred HHHHHHHHHHHHhcCCCeE-----------------EEeeeEEEEEEEEecCcccccccHHHHHHHHHH---CCcE----
Confidence 8888999988743 11110 00125789999997321 22346666553 2331
Q ss_pred CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 260 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.| + .+.+|+|++ ...++++++.+.++|+++
T Consensus 413 -------v~~----------------~--g~~iRis~~-~~~t~~~i~~~l~~l~~~ 443 (449)
T 3a8u_X 413 -------VRF----------------G--GDTLQFGPT-FNSKPQDLDRLFDAVGEV 443 (449)
T ss_dssp -------CEE----------------E--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------Eec----------------C--CCEEEEECC-CcCCHHHHHHHHHHHHHH
Confidence 111 0 168999987 666666666666666544
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=161.84 Aligned_cols=270 Identities=14% Similarity=0.103 Sum_probs=163.0
Q ss_pred chHHHHHHHccC----CCCE---EEEcCCCchhHHHHHhhhcCcccceeEEEec---------------CCCHHHHHHhh
Q 020548 2 SAISSVLMQLCS----SGGH---VVAARTLYGGTHALLTHFFPRACNITTTFVD---------------ISDHEMVNSAI 59 (324)
Q Consensus 2 ~ai~~~~~~~~~----~gd~---vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~---------------~~d~~~l~~~l 59 (324)
+|+..++.++++ +||+ |+++.+.|..+...+. ..|.++..++ ..|+++|++++
T Consensus 102 ~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i 176 (467)
T 1ax4_A 102 GAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENI 176 (467)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-----ccCCceecccccccccccccCCcccccCHHHHHHHH
Confidence 477888888887 9998 9998776677666663 1455544331 12899999999
Q ss_pred hc---CCceEEEEecCCCCc-ccccC---hHHHHHHHHhcCCEEEEcCCCCc---C-------CC---CccC------CC
Q 020548 60 VQ---GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP---L-------VL---SPAR------LG 113 (324)
Q Consensus 60 ~~---~~~~~v~~~~~~npt-G~~~~---~~~i~~l~~~~~~~~ivD~~~~~---~-------~~---~~~~------~~ 113 (324)
.+ +++++|++++|+||+ |.+.+ +++|+++|++||+++|+|+++.. + .. +..+ ..
T Consensus 177 ~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (467)
T 1ax4_A 177 AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKY 256 (467)
T ss_dssp HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGG
T ss_pred HhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccc
Confidence 43 379999999999999 78754 67999999999999999998621 1 11 1111 23
Q ss_pred CcEEEeCCccccccCCCeeEEEEEcC-h-hHHHHHHHhhhhh--hhccCCCCCHHHHH--H-HhcCcccHHHHHHHHHHH
Q 020548 114 ADVVVHSISKFISGGADIIAGAVCGP-A-NLVNSMMDLHQGA--LMLLGPTMNPKVAF--E-LSERIPHLGLRMKEHCHR 186 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g~r~~G~i~~~-~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 186 (324)
.|+++.|+||+++++ +||+++.+ + ++++.+....... ....+ ........ . .+..... ++.+++..++
T Consensus 257 ~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~ 331 (467)
T 1ax4_A 257 ADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYG-GLAGRDMAAMVQGLEEGTE-EEYLHYRIGQ 331 (467)
T ss_dssp CSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTT-TCCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred cceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccC-CccchHHHHHHHHHHHhhh-hhHHHHHHHH
Confidence 688899999999776 25888777 7 8888776554311 00111 12221111 1 1211111 2344455577
Q ss_pred HHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEE-------eCC-HHHHHHHHHHh-hcccccccccc
Q 020548 187 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-------MET-EEKANRLMNYL-QNYAQFGFMAV 257 (324)
Q Consensus 187 ~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------l~~-~~~~~~~~~~l-~~~~~~g~~~~ 257 (324)
++++.+.|++.+..+..|. +|.++++. ++. ..+...+.+.+ .. .|+ .+
T Consensus 332 ~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~gv-~v 388 (467)
T 1ax4_A 332 VKYLGDRLREAGIPIQYPT-------------------GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLE---SGV-RA 388 (467)
T ss_dssp HHHHHHHHHHTTCCBCSSC-------------------CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHH---HCE-EC
T ss_pred HHHHHHHHHhCCCCcccCC-------------------CceEEEEehhhhccccccCCCCHHHHHHHHHHh---cCc-ee
Confidence 8889999988655544343 46678888 432 22456677776 53 343 22
Q ss_pred cc-CCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCC-CHHHHHHHHHHHHHhh
Q 020548 258 SL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSRM 316 (324)
Q Consensus 258 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~-~~~~~~~~l~~~l~~~ 316 (324)
+. |.+.... .+.... ......+++|||++ .. .++++++.+.++|+++
T Consensus 389 ~~~g~~~~~~-~~~~g~----------~~~~~~~~iRls~~-~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 389 VEIGSFLLGR-DPATGE----------QKHADMEFMRLTIA-RRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp EEESHHHHCB-CTTTCS----------BCCCSCCEEEEECC-TTSSCHHHHHHHHHHHHTT
T ss_pred eecCcccccc-cccccc----------ccccccceEEEecc-cccCCHHHHHHHHHHHHHH
Confidence 22 2210000 000000 00012379999998 54 5566666666666554
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-19 Score=160.07 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=158.4
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHH
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 87 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 87 (324)
+++||+|+++.++|+++...++..... .|++++.++.. |+++ + ++++++|++++| ||||.+.|+++|.+
T Consensus 147 ~~~gd~Viv~~~~h~s~~~~~~~~a~~-~G~~v~~v~~~~~~~d~~~----i-~~~t~~v~i~~p-n~tG~~~~l~~i~~ 219 (438)
T 1wyu_A 147 ETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLPLEGGRTPLPE----V-GEEVGAVVVQNP-NFLGALEDLGPFAE 219 (438)
T ss_dssp HHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEECCBTTBCCCCC----C-CTTEEEEEEESS-CTTSBCCCHHHHHH
T ss_pred cCCCCEEEEcCccCHhHHHHHHHHHHH-CCCEEEEEcCcCCccCHHH----h-CCCeEEEEEECC-CCCeEEecHHHHHH
Confidence 578999999999999999887544433 68898888752 3333 5 678999999999 99999999999999
Q ss_pred HHHhcCCEEEEcCC-C-CcCCCCccCCCCcEEEeCCcc-----ccccCCCeeEEEEEcChhHHHHHHHhhhh--------
Q 020548 88 LAHDKGVTVVVDNT-F-SPLVLSPARLGADVVVHSISK-----FISGGADIIAGAVCGPANLVNSMMDLHQG-------- 152 (324)
Q Consensus 88 l~~~~~~~~ivD~~-~-~~~~~~~~~~~~d~~~~S~sK-----~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-------- 152 (324)
+|+++|+++++|.. + .+....+..+++|++++|.+| ++++| ++ |+++.++++.+.+.....+
T Consensus 220 la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp--~~-G~l~~~~~~~~~l~~~~~g~~~~~~~~ 296 (438)
T 1wyu_A 220 AAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGP--HF-GFLATKKAFVRQLPGRLVSETVDVEGR 296 (438)
T ss_dssp HHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCS--CC-EEEEECGGGGGGCCSCCEEEEEBTTSC
T ss_pred HHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCC--Ce-eEEEEcHHHHHhCCCceeccccccCCC
Confidence 99999999996633 2 222223345589999999444 34443 54 9999988877655221000
Q ss_pred -----------------hhhccCCCCCHHHHHHH---hcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCC
Q 020548 153 -----------------ALMLLGPTMNPKVAFEL---SERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDH 209 (324)
Q Consensus 153 -----------------~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~ 209 (324)
.++...++..+..+..+ +... ..+.+..++..++++++.+.|++. ++++..|.
T Consensus 297 ~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 372 (438)
T 1wyu_A 297 RGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK---- 372 (438)
T ss_dssp EEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----
T ss_pred cceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC----
Confidence 00011111133322111 2111 235556677789999999999998 66655332
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhcccccccccc--ccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV--SLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
..-.++.+.++ .....+.+.|.. .|+ .+ ..+.. .
T Consensus 373 --------------~~~~~~~~~~~--~~~~~~~~~L~~---~gi-~v~~~~~~~------------------------~ 408 (438)
T 1wyu_A 373 --------------PFFNEFALALP--KDPEAVRRALAE---RGF-HGATPVPRE------------------------Y 408 (438)
T ss_dssp --------------SBCSEEEEECS--SCHHHHHHHHHH---TTC-CCCEECCTT------------------------S
T ss_pred --------------CeEEEEEEeCC--CCHHHHHHHHHH---CCc-eeccccccc------------------------c
Confidence 01123455553 234566666664 233 11 11110 1
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+++.+|+|++ ..+++++++.+.++|+.+
T Consensus 409 ~~~~lRis~~-~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 409 GENLALFAAT-ELHEEEDLLALREALKEV 436 (438)
T ss_dssp CSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence 1478999999 888888888888888764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=164.32 Aligned_cols=204 Identities=11% Similarity=0.092 Sum_probs=137.9
Q ss_pred EEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCc------eEEEEecCCCCcccccChHHHH
Q 020548 18 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRT------KVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 18 vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~~~~i~ 86 (324)
|+++.+.|+++...++ ..|++++.++.+ |+++|++++ ++++ .+|++++++||||.+.|+++|+
T Consensus 185 v~~s~~~h~s~~~~~~-----~~G~~v~~v~~d~~~~~d~~~L~~~i-~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~ 258 (486)
T 1js3_A 185 AYASDQAHSSVERAGL-----IGGVKLKAIPSDGKFAMRASALQEAL-ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVG 258 (486)
T ss_dssp EEEETTCCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred EEECCCCcHHHHHHHH-----hCCCceEEeecCCCCCCCHHHHHHHH-HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHH
Confidence 7889999999988773 368888888864 899999999 5444 3888899999999999999999
Q ss_pred HHHHhcCCEEEEcCCCCcCC-CCc-cC------CCCcEEEeCCccccccCCCeeEEEEEcC-hhH-HHHHH---Hhhhhh
Q 020548 87 RLAHDKGVTVVVDNTFSPLV-LSP-AR------LGADVVVHSISKFISGGADIIAGAVCGP-ANL-VNSMM---DLHQGA 153 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~~~-~~~-~~------~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~-~~~l~---~~~~~~ 153 (324)
++|+++|+++++|++|+++. ..+ .. .++|.++.|+||++++| .++ |+++.+ +.. .+.+. .+..+.
T Consensus 259 ~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~-G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC-SAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC-EEEEESCHHHHHGGGC---------
T ss_pred HHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce-EEEEEeCHHHHHHHhcCCchhhCCC
Confidence 99999999999999995432 111 11 15899999999999875 564 877664 443 33331 111000
Q ss_pred hh-------------ccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 154 LM-------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 154 ~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
.. ..+........+..+. +...+.+.+++..++++++.+.|++.+ +++..+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------ 404 (486)
T 1js3_A 337 HQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV------------ 404 (486)
T ss_dssp ---CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC------------
T ss_pred cccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC------------
Confidence 00 0011122333333322 234566777888999999999999974 4554322
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHhhc
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYLQN 248 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~ 248 (324)
.++++.|.+++ ......+.+.+..
T Consensus 405 -------~~~~v~f~~~~~~~~~~~l~~~L~~ 429 (486)
T 1js3_A 405 -------TLGLVCFRLKGSDGLNEALLERINS 429 (486)
T ss_dssp -------CSSEEEEEESSCHHHHHHHHHHHHH
T ss_pred -------ceeEEEEEecChHHHHHHHHHHHHh
Confidence 24588888863 2234667777663
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=164.51 Aligned_cols=263 Identities=12% Similarity=0.081 Sum_probs=157.9
Q ss_pred chHHHHHHHccC-------CC-CEEEEcCCCchhHHHHHhhhcCc---------ccceeEEEecC-------CCHHHHHH
Q 020548 2 SAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---------ACNITTTFVDI-------SDHEMVNS 57 (324)
Q Consensus 2 ~ai~~~~~~~~~-------~g-d~vl~~~p~y~~~~~~~~~~~~~---------~~g~~~~~~~~-------~d~~~l~~ 57 (324)
+|+..+++.+.. +| ++|++.++.|++........... .....+..++. .|+++|++
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~ 225 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEA 225 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHH
Confidence 466777766554 55 58999999997754333211000 00112223332 27899999
Q ss_pred hhhc--CCceEEEEec-CCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCcc
Q 020548 58 AIVQ--GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISK 123 (324)
Q Consensus 58 ~l~~--~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK 123 (324)
++.+ +++++|++++ ++|++|.+.+ +++|+++|+++|+++|+||+|.++.... .....|++ |+||
T Consensus 226 ~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK 303 (457)
T 3tfu_A 226 QLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGK 303 (457)
T ss_dssp HHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECG
T ss_pred HHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EECh
Confidence 8832 6789999999 9999998875 8999999999999999999997664321 12246666 6899
Q ss_pred ccccCCCeeEEEEEcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCc
Q 020548 124 FISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLK 200 (324)
Q Consensus 124 ~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 200 (324)
.++++.+|+ |++++++++++.+.....+ .......+..+..++.++..++.+ +...++..++.+++.+.|++...
T Consensus 304 ~l~gG~~~l-G~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~- 381 (457)
T 3tfu_A 304 ALTGGYLSL-AATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARA- 381 (457)
T ss_dssp GGGTTSSCC-EEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGG-
T ss_pred hhhCCCcce-EEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 997733697 9999999999988632110 000111222333322222222221 13455667777888888876531
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHH
Q 020548 201 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 280 (324)
Q Consensus 201 ~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 280 (324)
.|.+. ...+.|.+++++++...+...+.+.+.. .|+ ++.|
T Consensus 382 --~~~v~-------------~vr~~G~~~~i~l~~~~~~~~~~~~l~~---~Gv-----------~v~~----------- 421 (457)
T 3tfu_A 382 --LPAVT-------------DVRVCGAIGVIECDRPVDLAVATPAALD---RGV-----------WLRP----------- 421 (457)
T ss_dssp --STTEE-------------EEEECSSCEEEEESSCCCHHHHHHHHHH---TTE-----------ECCC-----------
T ss_pred --CCCee-------------eeecCCeEEEEEECCcccHHHHHHHHHH---CCe-----------EEEe-----------
Confidence 11110 0113578999999743335667666664 233 1111
Q ss_pred HHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 281 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 281 ~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..+.+|+++. ...++++++.+.++|+++
T Consensus 422 -------~~~~lRi~p~-~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 422 -------FRNLVYAMPP-YICTPAEITQITSAMVEV 449 (457)
T ss_dssp -------BTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------cCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1368999987 555555555555555443
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=164.90 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=120.2
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhh---------cCcccce------eEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRACNI------TTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~------~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++.+.. ++++|++.+|.|+++....... .+...+. .+..++.+|++++++++++ +
T Consensus 122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (434)
T 3l44_A 122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH 201 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC
Confidence 356666665543 6799999999998754322100 0000111 4455666699999999842 5
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.+|.... .....|++ |+||.++ +|+|+
T Consensus 202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~-~G~~i 278 (434)
T 3l44_A 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIG-GGLPI 278 (434)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGG-TTSSC
T ss_pred CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhc-CCcCe
Confidence 7888999988888898877 9999999999999999999997662111 12235554 6899997 58997
Q ss_pred EEEEEcChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 133 AGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
|++++++++++.+..... ...++.++.+.+.++...+..+.. +...++..++++++.+.|++.
T Consensus 279 -G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 343 (434)
T 3l44_A 279 -GAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQ 343 (434)
T ss_dssp -EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred -eeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999999998887754211 011122222222222222221212 234455566666666666653
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=161.84 Aligned_cols=264 Identities=11% Similarity=0.073 Sum_probs=156.3
Q ss_pred chHHHHHHHcc-----C---CCCEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecC--------CC------
Q 020548 2 SAISSVLMQLC-----S---SGGHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDI--------SD------ 51 (324)
Q Consensus 2 ~ai~~~~~~~~-----~---~gd~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~--------~d------ 51 (324)
+|+..+++.++ . ++|+|++.+|.|+++........... .......++. .|
T Consensus 118 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
T 3n5m_A 118 EANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYD 197 (452)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHH
Confidence 46677777665 4 78999999999987654332111000 0112333332 13
Q ss_pred ---HHHHHHhhh---cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCC
Q 020548 52 ---HEMVNSAIV---QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLG 113 (324)
Q Consensus 52 ---~~~l~~~l~---~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~ 113 (324)
+++|++++. .+++++|+++++ +| +|.+.+ +++|+++|++||+++|+||+|.++... .....
T Consensus 198 ~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~ 276 (452)
T 3n5m_A 198 VECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVK 276 (452)
T ss_dssp CHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCC
Confidence 899999994 267899999998 99 998875 999999999999999999999766321 11223
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHH---hhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD---LHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRA 187 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 187 (324)
.|++ ++||.+++ | +|+ |++++++++++.+.. ... .......+..+..++.++..++.+ +...++..++.
T Consensus 277 ~di~--t~sK~l~~-G~~~i-g~~~~~~~i~~~~~~~~~~~~-~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 351 (452)
T 3n5m_A 277 PDII--TMAKGITS-AYLPL-SATAVKREIYEAFKGKGEYEF-FRHINTFGGNPAACALALKNLEIIENENLIERSAQMG 351 (452)
T ss_dssp CSEE--EECGGGGT-TSSCC-EEEEEEHHHHGGGCSSSTTCS-CCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCEE--eecccccC-CCcce-EEEEECHHHHHHHhhccCCCC-ccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5655 48899987 8 997 999999998887743 111 000111222333322222222221 23345556666
Q ss_pred HHHHHHHHhC----CCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC---------HHHHHHHHHHhhccccccc
Q 020548 188 LIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---------EEKANRLMNYLQNYAQFGF 254 (324)
Q Consensus 188 ~~l~~~L~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---------~~~~~~~~~~l~~~~~~g~ 254 (324)
+++.+.|++. +.....+ +.|.++++.+.. ......+.+.+.. .|+
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gv 409 (452)
T 3n5m_A 352 SLLLEQLKEEIGEHPLVGDIR-------------------GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE---KGL 409 (452)
T ss_dssp HHHHHHHHHHHTTCTTEEEEE-------------------ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH---TTE
T ss_pred HHHHHHHHHHHhcCCCeEEEE-------------------EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH---CCc
Confidence 6666666653 2210111 357788887731 2234456666553 343
Q ss_pred cccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 255 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+. .|...+ .+..++++||+++ ...+++.++.+.++|+++
T Consensus 410 ~~-----------~~~~~~-----------~~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 410 II-----------GRNGMT-----------TAGYNNILTLAPP-LVISSEEIAFVIGTLKTA 448 (452)
T ss_dssp EC-----------EECTTS-----------STTCCCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EE-----------eecCcc-----------cCCCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 21 111110 0112589999988 766666666666666554
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-19 Score=160.08 Aligned_cols=144 Identities=11% Similarity=0.101 Sum_probs=101.3
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhh----------cCcccceeEEEecC----CC--------
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHF----------FPRACNITTTFVDI----SD-------- 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~----------~~~~~g~~~~~~~~----~d-------- 51 (324)
+|+..+++.+.. ++++|++.++.|+++....... .+...+......+. +|
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 467777776653 4699999999998765443211 11101222222222 12
Q ss_pred ----HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC
Q 020548 52 ----HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG 113 (324)
Q Consensus 52 ----~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~ 113 (324)
+++|++++.+ +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.++.... ....
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~ 282 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK 282 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence 6889988842 57899999999999998765 8999999999999999999997664221 1224
Q ss_pred CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 114 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
.|++ ++||.++++++|+ |++++++++++.+..
T Consensus 283 pdi~--t~sK~l~gG~~~l-g~v~~~~~i~~~~~~ 314 (460)
T 3gju_A 283 PDLI--TIAKGLTSAYAPL-SGVIVADRVWQVLVQ 314 (460)
T ss_dssp CSEE--EECGGGTTTSSCC-EEEEEEHHHHHHHHH
T ss_pred CCee--eeehhhcCCCCCe-EEEEECHHHHHHHhc
Confidence 5665 4789997733797 999999999998864
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-19 Score=163.37 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=125.1
Q ss_pred C-EEEEcCCCchhHHHHHhhhcCcccce-eEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChH
Q 020548 16 G-HVVAARTLYGGTHALLTHFFPRACNI-TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 16 d-~vl~~~p~y~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~ 83 (324)
+ +|+++.+.|+++...+..+ . .|. +++.++.+ |+++|++++.+. ++++|++++++||||.+.|++
T Consensus 189 ~~~v~~s~~~h~s~~~~~~~~-g--~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~ 265 (504)
T 2okj_A 189 KLVLFTSEQSHYSIKKAGAAL-G--FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQ 265 (504)
T ss_dssp CEEEEEETTSCTHHHHHHHHT-T--SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHH
T ss_pred CeEEEECCcchHHHHHHHHHc-C--CCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHH
Confidence 6 7999999999998887422 1 133 67777764 899999998331 589999999999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-C-----ccC-C-CCcEEEeCCccccccCCCeeEEEEEcCh-hHHHHHHHhhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-S-----PAR-L-GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL 154 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-~-----~~~-~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~-~~~~~l~~~~~~~~ 154 (324)
+|+++|+++|+++++|++|+++.. . ... . ++|+++.|+||++++| .++ |+++.++ ++++........+.
T Consensus 266 ~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~-g~l~~~~~~~~~~~~~~~~~~l 343 (504)
T 2okj_A 266 EIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQC-SAILVKEKGILQGCNQMCAGYL 343 (504)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCC-EEEEESSTTHHHHHHCCCCSSS
T ss_pred HHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cce-EEEEEECHHHHHHHhcCCCccc
Confidence 999999999999999999954432 1 112 2 6899999999999876 454 8886654 56654322111110
Q ss_pred hccCC-----------------CCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeC
Q 020548 155 MLLGP-----------------TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLY 203 (324)
Q Consensus 155 ~~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 203 (324)
...+. .......+..+. +...+.+..++..++++++.+.|++. ++++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 412 (504)
T 2okj_A 344 FQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 412 (504)
T ss_dssp CCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESS
T ss_pred cCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00000 012333333222 22345667777889999999999987 445543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-19 Score=160.49 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=102.0
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhhc----------CcccceeEEEecC----C---C-----
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFF----------PRACNITTTFVDI----S---D----- 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~~----------~~~~g~~~~~~~~----~---d----- 51 (324)
+|+..+++.+++ ++++|++.+|.|+++........ +...+.....++. . |
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 201 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHH
Confidence 467777777654 57999999999997664432211 1101222222221 1 2
Q ss_pred ---HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCC
Q 020548 52 ---HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA 114 (324)
Q Consensus 52 ---~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~ 114 (324)
+++|++++.+ +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.++.... .....
T Consensus 202 ~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~p 281 (459)
T 4a6r_A 202 VVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQP 281 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCC
Confidence 7888888842 56788999988888888876 8999999999999999999997664221 12245
Q ss_pred cEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 115 DVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 115 d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
|+++ +||.++++++|+ |++++++++++.+.
T Consensus 282 di~t--~sK~l~gg~~~l-g~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 282 DLFT--AAKGLSSGYLPI-GAVFVGKRVAEGLI 311 (459)
T ss_dssp SEEE--ECGGGGTTSSCC-EEEEECHHHHHHHH
T ss_pred Ceee--hhhhhcCCCCCc-cceeeCHHHHHHhh
Confidence 6664 789998866897 99999999999887
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=164.00 Aligned_cols=191 Identities=11% Similarity=0.047 Sum_probs=129.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHH-HhhhcCcccceeEEEecC----------CCHHHH-----HHhhhcCC--
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDI----------SDHEMV-----NSAIVQGR-- 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~-~~~~~~~~~g~~~~~~~~----------~d~~~l-----~~~l~~~~-- 63 (324)
+|+..++.+++++||+|+++.++|.++... + +..|.++++++. .|++++ ++++ +++
T Consensus 200 ~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~-----~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i-~~~~~ 273 (730)
T 1c4k_A 200 NANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-----AMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELA-AKVDP 273 (730)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-----TTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHT-TTSSH
T ss_pred HHHHHHHHHhcCCCCEEEEcCCchHHHHHHHH-----HHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHh-hcCCc
Confidence 467888889999999999999999998876 4 236777776643 156666 8888 443
Q ss_pred ----c----eEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCC-------CccCC---CCc----EEEeC
Q 020548 64 ----T----KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-------SPARL---GAD----VVVHS 120 (324)
Q Consensus 64 ----~----~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~-------~~~~~---~~d----~~~~S 120 (324)
+ +++++++| |++|.+.|+++|+++|+++|+++++|++|+. +.+ .+... ++| ++++|
T Consensus 274 ~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S 352 (730)
T 1c4k_A 274 ERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQS 352 (730)
T ss_dssp HHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEEC
T ss_pred ccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEEC
Confidence 4 89999998 6899999999999999999999999999942 222 23333 677 99999
Q ss_pred CccccccCCCeeEEEEEcChhH---------HHHHHHhhhhhhhccCCCCCHHHHHH---HhcCcc--cHHHHHHHHHHH
Q 020548 121 ISKFISGGADIIAGAVCGPANL---------VNSMMDLHQGALMLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHR 186 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~ 186 (324)
+||+++++.. +|+++.+++. ...+..... ....++++....+. +...+. .-..+.++..++
T Consensus 353 ~hK~L~g~~~--gg~I~v~~~~l~g~~~~i~~~~~~~~~~---~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~ 427 (730)
T 1c4k_A 353 VHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFN---LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLIT 427 (730)
T ss_dssp HHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHH---HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--EEEEEecchhhcCcccccCHHHHHHHHH---HhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999876432 3677433222 122222221 12333444332221 111111 134566778889
Q ss_pred HHHHHHHHHh--CCCceeCC
Q 020548 187 ALIFARRMKK--LGLKVLYP 204 (324)
Q Consensus 187 ~~~l~~~L~~--~~~~~~~p 204 (324)
++++++.|++ .++++..|
T Consensus 428 a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 428 TIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHhhhCCCeEEccc
Confidence 9999999998 35565444
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=160.77 Aligned_cols=251 Identities=12% Similarity=0.107 Sum_probs=166.8
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~ 83 (324)
+++.|+++.+.|.++...+. ..|.+++.++.+ |+++|++++.+. .+.+|+++.++|++|.+.|++
T Consensus 187 ~~~~v~~s~~~H~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~ 261 (481)
T 4e1o_A 187 ARLVAYASDQAHSSVEKAGL-----ISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLS 261 (481)
T ss_dssp TTEEEEEETTSCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred CCeEEEEcCcchHHHHHHHH-----hCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHH
Confidence 67899999999999988873 367888888864 899999998322 167788899999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcC-CCCc----cCCC---CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPL-VLSP----ARLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 155 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~-~~~~----~~~~---~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~ 155 (324)
+|+++|++||+++++|++|++. ...+ ...+ +|.++.++||+++.|... +++++.++.+..........+..
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~ 340 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIYLR 340 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGGGC
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchhcc
Confidence 9999999999999999999443 2221 1113 599999999999887666 46667776654332111110100
Q ss_pred ---------------ccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 156 ---------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 156 ---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
..+........+..+. +...+++.+++..++++++.+.|++. ++++..|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~------------ 408 (481)
T 4e1o_A 341 HANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR------------ 408 (481)
T ss_dssp CTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC------------
T ss_pred CcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------
Confidence 0111122333333332 33446778888899999999999998 44554333
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
..++++|.+++ ......+.+++.. .|.+.+ .|... .....+|+++
T Consensus 409 -------~~~~v~f~~~~~~~~~~~l~~~L~~---~g~~~~----------~~~~~--------------~g~~~lR~~~ 454 (481)
T 4e1o_A 409 -------HLGLVVFRLKGPNSLTENVLKEIAK---AGRLFL----------IPATI--------------QDKLIIRFTV 454 (481)
T ss_dssp -------CSSEEEEEESSCHHHHHHHHHHHHH---HCSSBC----------EEEEE--------------TTEEEEEEEC
T ss_pred -------ceeEEEEEeCCchHHHHHHHHHHHh---CCeEEE----------EeeEE--------------CCEEEEEEEe
Confidence 35688999863 4456777777764 222111 11110 0135799998
Q ss_pred ccCC-CHHHHHHHHHHHHHhhh
Q 020548 297 GYLG-TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 297 g~~~-~~~~~~~~l~~~l~~~~ 317 (324)
+ .. +++++++.+.++++++.
T Consensus 455 ~-~~~tt~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 455 T-SQFTTRDDILRDWNLIRDAA 475 (481)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHH
Confidence 7 54 35666666666665553
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=160.44 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=122.5
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccce---eEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~ 83 (324)
+|+++.+.|+++...++. .|. +++.++.+ |+++|++++.+. ++++|++++++|+||.+.|++
T Consensus 205 ~vl~s~~~h~s~~~~~~~-----~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~ 279 (515)
T 2jis_A 205 ALFTSKECHYSIQKGAAF-----LGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLE 279 (515)
T ss_dssp EEEEETTSCTHHHHHHHH-----TTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHH
T ss_pred EEEECCCccHHHHHHHHH-----cCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHH
Confidence 899999999999888742 344 67777754 899999998331 589999999999999999999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-Cc-----c-CC-CCcEEEeCCccccccCCCeeEEEEEcChh--HHHHHH----Hh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-SP-----A-RL-GADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMM----DL 149 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-~~-----~-~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~--~~~~l~----~~ 149 (324)
+|+++|+++|+++++|++|+++.. .+ . .. ++|+++.|+||++++|. .+ |+++.+++ +++... .+
T Consensus 280 ~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~-G~l~~~~~~~~~~~~~~~~~~y 357 (515)
T 2jis_A 280 AIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QC-SALLLQDTSNLLKRCHGSQASY 357 (515)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESCCSCHHHHHHCC----
T ss_pred HHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC-Ce-eEEEEeChHHHHHHHhcCCchh
Confidence 999999999999999999954432 21 1 22 68999999999998653 44 77766544 655432 11
Q ss_pred hhhhhh-------c------cCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeC
Q 020548 150 HQGALM-------L------LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLY 203 (324)
Q Consensus 150 ~~~~~~-------~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~ 203 (324)
..+... . .+-.......+..+. +...++...++..++++++.+.|++. ++++..
T Consensus 358 l~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~ 427 (515)
T 2jis_A 358 LFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVM 427 (515)
T ss_dssp -----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred ccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 110000 0 000111233222222 22335567777889999999999987 445543
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=163.69 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=113.8
Q ss_pred chHHHHHHH---ccCCCCEEEEcCCCchhHHHHHhhhc------Ccccce------eEEEecCCCHHHHHHhhhc--CCc
Q 020548 2 SAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF------PRACNI------TTTFVDISDHEMVNSAIVQ--GRT 64 (324)
Q Consensus 2 ~ai~~~~~~---~~~~gd~vl~~~p~y~~~~~~~~~~~------~~~~g~------~~~~~~~~d~~~l~~~l~~--~~~ 64 (324)
+|+..+++. +.+ +++|++.+|+|+++........ +...|+ .+..++..|++++++++++ +++
T Consensus 124 eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (453)
T 2cy8_A 124 ETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDI 202 (453)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCE
Confidence 467777776 555 5789999999987654321100 111233 2445555699999999843 478
Q ss_pred eEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCeeEE
Q 020548 65 KVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADIIAG 134 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~~G 134 (324)
++|++++++|++|.+.+ +++|+++|++||+++|+||+|+++.... .....|++ |+||++++ |.++ |
T Consensus 203 ~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G 278 (453)
T 2cy8_A 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASAG-GLPG-G 278 (453)
T ss_dssp EEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGGT-TSSC-E
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhhC-Ccce-E
Confidence 89988888888998877 9999999999999999999997662211 12245755 78999986 8896 9
Q ss_pred EEEcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHhC
Q 020548 135 AVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 135 ~i~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
++++++++++.+.....+ .......+..+..++.+...++. .+...++..++++++.+.|++.
T Consensus 279 ~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 279 ILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp EEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999888766541000 00011112223322222222222 2334556677778888877764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-19 Score=160.30 Aligned_cols=143 Identities=14% Similarity=0.138 Sum_probs=92.0
Q ss_pred chHHHHHHHccC----CC----CEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecCC---------------
Q 020548 2 SAISSVLMQLCS----SG----GHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDIS--------------- 50 (324)
Q Consensus 2 ~ai~~~~~~~~~----~g----d~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~~--------------- 50 (324)
+|+..+++.+.. +| |+|++.+|+|++............ ....+..++.+
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 467777776654 44 999999999987653331110000 00112333332
Q ss_pred -CHHHHHHhhh--cCCceEEEEecCC-CCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCc
Q 020548 51 -DHEMVNSAIV--QGRTKVLYFESIS-NPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGAD 115 (324)
Q Consensus 51 -d~~~l~~~l~--~~~~~~v~~~~~~-nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d 115 (324)
|+++|+++++ .+++++|++++++ |++|...+ +++|+++|++||+++|+||+|+++... ......|
T Consensus 195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d 274 (448)
T 3dod_A 195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD 274 (448)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC
Confidence 3889999884 2578899999988 99997765 899999999999999999999766321 1122356
Q ss_pred EEEeCCccccccCC-CeeEEEEEcChhHHHHHHH
Q 020548 116 VVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 116 ~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~ 148 (324)
++ ++||.+++ | .|+ |++++++++++.+..
T Consensus 275 i~--t~sK~l~~-G~~~i-g~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 275 LM--AAGKGITG-GYLPI-AVTFATEDIYKAFYD 304 (448)
T ss_dssp EE--EECGGGGT-TSSCC-EEEEEEHHHHHTTCS
T ss_pred EE--EecccccC-CcCce-EEEEECHHHHHHhhh
Confidence 55 58899977 8 597 999999999888764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=158.94 Aligned_cols=222 Identities=15% Similarity=0.132 Sum_probs=128.8
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHhhhcCc------c---cceeEEEecCC----C-------------HH
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR------A---CNITTTFVDIS----D-------------HE 53 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~~~~~~------~---~g~~~~~~~~~----d-------------~~ 53 (324)
+|+..+++... ..+++|++.+++|++........... . ....+..++.+ | ++
T Consensus 136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (453)
T 4ffc_A 136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS 215 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence 46677776543 24589999999998765444222110 0 01123333332 2 35
Q ss_pred HHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCc
Q 020548 54 MVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSIS 122 (324)
Q Consensus 54 ~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~s 122 (324)
.+++.+..+++++|++++.++..|.+.+ +++|+++|++||+++|+||+|.++.... .....|++ ++|
T Consensus 216 ~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~s 293 (453)
T 4ffc_A 216 RIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMA 293 (453)
T ss_dssp HHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EEC
T ss_pred HHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchH--hhh
Confidence 6666662345677777766666666655 8999999999999999999997664221 12234555 588
Q ss_pred cccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh----CC
Q 020548 123 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LG 198 (324)
Q Consensus 123 K~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~ 198 (324)
|.+++ |+|+ ||+++++++++.+.+... ..++.++.+.+.++...+..+. .+...++..++.+++.+.|++ ++
T Consensus 294 K~~~~-G~~~-G~~~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~ 369 (453)
T 4ffc_A 294 KGIAG-GMPL-SAVTGRAELMDAVYAGGL-GGTYGGNPVTCAAAVAALGVMR-ELDLPARARAIEASVTSRLSALAEEVD 369 (453)
T ss_dssp GGGGT-TSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhcC-CcCe-EEEEECHHHHhhhcccCc-CCCCCcCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99988 8997 999999998887765443 1122223222222222222111 112334444555555555544 33
Q ss_pred CceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-------CHHHHHHHHHHhhc
Q 020548 199 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKANRLMNYLQN 248 (324)
Q Consensus 199 ~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-------~~~~~~~~~~~l~~ 248 (324)
.....+ +.|.++++.+. +......+.+.+..
T Consensus 370 ~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 407 (453)
T 4ffc_A 370 IIGEVR-------------------GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS 407 (453)
T ss_dssp SEEEEE-------------------EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH
T ss_pred CeEEEE-------------------eeceEEEEEEecCcccCCCHHHHHHHHHHHHh
Confidence 211111 35779999883 34456667777664
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=157.81 Aligned_cols=260 Identities=16% Similarity=0.134 Sum_probs=151.3
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhhcCc------c---cceeEEEecCC------------------CH
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR------A---CNITTTFVDIS------------------DH 52 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~~~~------~---~g~~~~~~~~~------------------d~ 52 (324)
+|+..+++.... .+++|++..++|++........... . ....+..++.. ++
T Consensus 133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (451)
T 3oks_A 133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence 466777765543 4589999999998765444221110 0 11123344332 24
Q ss_pred HHHHHhhh----cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEE
Q 020548 53 EMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVV 117 (324)
Q Consensus 53 ~~l~~~l~----~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~ 117 (324)
+.+++.++ .+++++|++++.+++.|.+.+ +++|+++|++||+++|+||+|.++... ......|++
T Consensus 213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~ 292 (451)
T 3oks_A 213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI 292 (451)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee
Confidence 44444442 246788888887777777765 999999999999999999999766321 112245665
Q ss_pred EeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHh-
Q 020548 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK- 196 (324)
Q Consensus 118 ~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 196 (324)
|+||.+++ |+|+ ||+++++++++.+.+... ..++.++.+.+.++...+..+.. +...++..++.+++.+.|++
T Consensus 293 --t~sK~l~~-G~~i-G~v~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 366 (451)
T 3oks_A 293 --VTAKGIAG-GLPL-SAVTGRAEIMDSPHVSGL-GGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRL 366 (451)
T ss_dssp --EECGGGGT-TSSC-EEEEEEHHHHTCSCTTSB-CCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred --eehhhhhC-Ccce-EEEEECHHHHhhhcCCCc-CCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH
Confidence 68899987 8997 999999998887765433 11122222222222222221111 12344455555555555554
Q ss_pred ---CCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEe-------CCHHHHHHHHHHhhccccccccccccCCcccee
Q 020548 197 ---LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-------ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 266 (324)
Q Consensus 197 ---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-------~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~ 266 (324)
++.....+ +.|.++++.+ ++......+.+.+.. .|++
T Consensus 367 ~~~~~~~~~~~-------------------~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gv~----------- 413 (451)
T 3oks_A 367 QAEDDRIGDVR-------------------GRGAMIAMELVKAGTTEPDADLTKALCAGAHA---AGVI----------- 413 (451)
T ss_dssp HHHCTTEEEEE-------------------EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH---TTEE-----------
T ss_pred HhhCCCeEEEE-------------------EeeEEEEEEEecCccCCCCHHHHHHHHHHHHh---CCcE-----------
Confidence 33211111 3577999988 334456677777664 3331
Q ss_pred ccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 267 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
..|. +..++.+|+++. ...+++.++.+.++|+++
T Consensus 414 v~~~---------------~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 447 (451)
T 3oks_A 414 VLSC---------------GTYGNVVRFLPP-LSIGDDLLNEGLDVLEEV 447 (451)
T ss_dssp CEEE---------------CTTSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EecC---------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1221 112478999988 665666565555555443
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=164.61 Aligned_cols=223 Identities=14% Similarity=0.172 Sum_probs=140.6
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++.. ..++++|++.+|+|+++........ +...|+ .+..++..|++++++++++ +
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 202 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGD 202 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCC
Confidence 4666777651 3346889999999987543221000 011232 2455556799999999843 4
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++.+|++|.+.+ +++|.++|++||+++|+||+|+++.... .....|++ |+||.+++ |.++
T Consensus 203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~ 279 (434)
T 2epj_A 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGG-GFPV 279 (434)
T ss_dssp GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGT-TSSC
T ss_pred CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcC-Ccce
Confidence 7889999888889999887 9999999999999999999997663211 12246664 78999987 8996
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhC----CCceeCCCC
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKL----GLKVLYPGL 206 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~p~~ 206 (324)
|++++++++++.+....... .....+..+..++.+...++.+ +...++..++++++.+.|++. +.....+
T Consensus 280 -G~v~~~~~~~~~l~~~~~~~-~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-- 355 (434)
T 2epj_A 280 -GAVAGSREVMSLLTPQGKVF-NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTIN-- 355 (434)
T ss_dssp -EEEEECHHHHTTBTTTSSBC-CCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE--
T ss_pred -eeeeecHHHHHhhccCCCcc-cCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE--
Confidence 99999988877665421100 0111123333332222222222 234556677788888888764 3321111
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCC-------------HHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------------~~~~~~~~~~l~~ 248 (324)
+.|.++++.++. ......+.+.+..
T Consensus 356 -----------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 393 (434)
T 2epj_A 356 -----------------RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR 393 (434)
T ss_dssp -----------------EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH
T ss_pred -----------------EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH
Confidence 257799999864 2345667777663
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=160.23 Aligned_cols=250 Identities=11% Similarity=0.064 Sum_probs=156.3
Q ss_pred CC-EEEEcCCCchhHHHHHhhhcCcccce-eEEEecCC-----CHHHHHHhhhcC---Cc--eEEEEecCCCCcccccCh
Q 020548 15 GG-HVVAARTLYGGTHALLTHFFPRACNI-TTTFVDIS-----DHEMVNSAIVQG---RT--KVLYFESISNPTLAVANI 82 (324)
Q Consensus 15 gd-~vl~~~p~y~~~~~~~~~~~~~~~g~-~~~~~~~~-----d~~~l~~~l~~~---~~--~~v~~~~~~nptG~~~~~ 82 (324)
|| +|+++.+.|.++...+.... .|. +++.++.+ |+++|++++.+. ++ .+|+++.++|+||.+.|+
T Consensus 201 g~~~v~~s~~~h~s~~~~~~~~g---~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l 277 (497)
T 2qma_A 201 DKLRIVCSKKSHFTVQKSASWMG---LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDL 277 (497)
T ss_dssp GGEEEEEETTSCTHHHHHHHHTT---SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred CCeEEEECCCchHHHHHHHHHcC---CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCH
Confidence 46 89999999999888774221 133 57777664 889999988322 23 488889999999999999
Q ss_pred HHHHHHHHhcCCEEEEcCCCCcCCC-Ccc-----CC-CCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhh
Q 020548 83 PELSRLAHDKGVTVVVDNTFSPLVL-SPA-----RL-GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 154 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~~~~~~-~~~-----~~-~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~ 154 (324)
++|+++|+++|+++++|++|+++.. .+. .. ++|+++.|+||++++| .++ |+++. ++..++.+..... +.
T Consensus 278 ~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p-~~~-G~l~~~~~~~~~~~~~~~~-yl 354 (497)
T 2qma_A 278 DFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQT-ISC-GALLVNDKSNFKFLLHHAD-YL 354 (497)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC-SSC-EEEEESCGGGGGGGCC------
T ss_pred HHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCC-cce-EEEEEeCHHHHHHhcCCch-hc
Confidence 9999999999999999999954432 221 12 5799999999999886 465 77754 4443333211000 00
Q ss_pred hccC---CC-----------CCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHH
Q 020548 155 MLLG---PT-----------MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 155 ~~~~---~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~ 217 (324)
...+ +. ......+..+. +...+...+++..++++++.+.|++.+ +++..|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------ 422 (497)
T 2qma_A 355 NREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP------------ 422 (497)
T ss_dssp ---------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC------------
T ss_pred CCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC------------
Confidence 0000 00 11222222222 233456777888999999999999874 4553332
Q ss_pred HhccCCCcceEEEEEeCCH-----HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 218 MANKEYGFGGLLCLDMETE-----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~-----~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
.+++++|.+.+. .....+.+.+.. .|++.. +... .+ ..+++
T Consensus 423 -------~~~~v~f~~~~~~~~~~~l~~~l~~~l~~---~G~~~~-----------~~~~------------~~-g~~~l 468 (497)
T 2qma_A 423 -------SLSTVLFRATHETADLDELNKALRLEALT---RGIAVL-----------GETI------------VD-GKTAL 468 (497)
T ss_dssp -------SSSEEEEEECCSSSCHHHHHHHHHHHHHH---HTSCBC-----------EEEE------------ET-TEEEE
T ss_pred -------CceEEEEEEcCCccCHHHHHHHHHHHHHh---CCCEEE-----------EeeE------------EC-CEEEE
Confidence 355889988632 112345555442 333111 1000 00 13689
Q ss_pred EEEe-ccCCCHHHHHHHHHHHHHhhh
Q 020548 293 RMSV-GYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 293 R~s~-g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|+|+ + ..+++++++.+.++|+.+.
T Consensus 469 Ris~~~-~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 469 KFTILN-PCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp EEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 9999 6 6777777877777776654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=158.04 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=121.0
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhhcC---------cccceeEEEecC----C---C------
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFP---------RACNITTTFVDI----S---D------ 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~~~---------~~~g~~~~~~~~----~---d------ 51 (324)
+|+..+++.+.. ++++|++.++.|+++......... ...+......+. . |
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~ 206 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGL 206 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHH
Confidence 356667766553 468999999999876543321111 001332322222 1 1
Q ss_pred --HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCc
Q 020548 52 --HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGAD 115 (324)
Q Consensus 52 --~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d 115 (324)
+++|++.+.+ +++++|++++++|++|.+.+ +++|+++|+++|+++|+||+|.+|.... .....|
T Consensus 207 ~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd 286 (472)
T 3hmu_A 207 ARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH 286 (472)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCc
Confidence 7888888832 57899999999999999876 9999999999999999999997764321 123467
Q ss_pred EEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHH-HHHHHHHH
Q 020548 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHC-HRALIFAR 192 (324)
Q Consensus 116 ~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~ 192 (324)
+++ ++|.++++++|+ |++++++++++.+....... ....+..+..++.++..++.+ +...++.. ++.+++.+
T Consensus 287 i~t--~sK~l~gg~~pl-G~v~~~~~i~~~~~~~~~~~--~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~ 361 (472)
T 3hmu_A 287 IMT--IAKGLSSGYAPI-GGSIVCDEVAHVIGKDEFNH--GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKE 361 (472)
T ss_dssp EEE--ECGGGTTTSSCC-EEEEEEHHHHHHHTTSCBCC--CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHH
T ss_pred eee--echhhhcCCcce-EEEEECHHHHHhcccCCccc--cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 775 789998866897 99999999998883211000 111122233333222222222 23455566 77778888
Q ss_pred HHHhC
Q 020548 193 RMKKL 197 (324)
Q Consensus 193 ~L~~~ 197 (324)
.|+++
T Consensus 362 ~L~~l 366 (472)
T 3hmu_A 362 KWEAL 366 (472)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 88664
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=160.05 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=123.5
Q ss_pred chHHHHHHHccC--CCCEEEEcCCCchhHHHHHhhh---------cCcccc------eeEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRACN------ITTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g------~~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++.+.. ++++|++.+|.|++........ .+...+ ..+..++.+|+++++++++. +
T Consensus 120 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 3k28_A 120 EATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD 199 (429)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 356666665443 5789999999998654322100 000001 13445556699999998842 5
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++++|++|.+.+ +++|+++|++||+++|+||+|.++.... .....|++ ++||.+++ |+|+
T Consensus 200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~i 276 (429)
T 3k28_A 200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLT--CLGKVIGG-GLPV 276 (429)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSCC
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCcee--hhhhhhcC-CCCe
Confidence 6889999988888998887 9999999999999999999997662111 12235554 58899976 8997
Q ss_pred EEEEEcChhHHHHHHHhhh--hhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 133 AGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
|++++++++++.+..... ...++.++.+.+.++...+.... ++..++..++++++.+.|++.
T Consensus 277 -G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--~~~~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 277 -GAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--PESYVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp -EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887754321 01112222222222222333333 566677788888888888764
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=157.19 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=162.0
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChHH
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPE 84 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~ 84 (324)
++++|+++.+.|.++...+. ..|.+++.++.+ |+++|++++... .+.+|+++.++|++|.+.|+++
T Consensus 181 ~~~~vi~s~~~H~s~~~~~~-----~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~ 255 (475)
T 3k40_A 181 GKLVGYCSDQAHSSVERAGL-----LGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDE 255 (475)
T ss_dssp HHEEEEEETTSCHHHHHHHH-----HHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred CCeEEEECCCchHHHHHHHH-----HcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHH
Confidence 45789999999999988873 368888888874 899999998322 1677888999999999999999
Q ss_pred HHHHHHhcCCEEEEcCCCCcC-CCCcc----CC---CCcEEEeCCccccccCCCeeEEEEEcChhHHH-HHHHhhhhhh-
Q 020548 85 LSRLAHDKGVTVVVDNTFSPL-VLSPA----RL---GADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGAL- 154 (324)
Q Consensus 85 i~~l~~~~~~~~ivD~~~~~~-~~~~~----~~---~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~-~l~~~~~~~~- 154 (324)
|+++|+++|+++++|++|++. ...+. .. .+|.++.|+||++++|... +++++.+++... .+.....+..
T Consensus 256 I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~ 334 (475)
T 3k40_A 256 CGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC-SAMWLKDPSWVVNAFNVDPLYLKH 334 (475)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESSGGGC-------------
T ss_pred HHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCce-EEEEEeCHHHHHHHhcCCccccCC
Confidence 999999999999999999442 22211 11 3699999999999876555 355566665432 2211111000
Q ss_pred ------------hccCC-CCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHH
Q 020548 155 ------------MLLGP-TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 155 ------------~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~ 218 (324)
...++ .......+..+. +...++..+++..++++++.+.|++. ++++..|.
T Consensus 335 ~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~------------- 401 (475)
T 3k40_A 335 DMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI------------- 401 (475)
T ss_dssp --------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-------------
T ss_pred CcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------
Confidence 00001 012223333222 23446677888899999999999998 44655443
Q ss_pred hccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 219 ANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
..++++|.++ ......++.+++.. .|.+. +.|... .....+|++++
T Consensus 402 ------~~~iv~f~~~~~~~~~~~l~~~L~~---~g~~~----------~~~~~~--------------~g~~~lR~~~~ 448 (475)
T 3k40_A 402 ------NMGLVCFRLKGSNERNEALLKRING---RGHIH----------LVPAKI--------------KDVYFLRMAIC 448 (475)
T ss_dssp ------BTTEEEEEESSCHHHHHHHHHHHHH---HTSCB----------CEEEEE--------------TTEEEEEEECC
T ss_pred ------ceEEEEEEeCCchHHHHHHHHHHHh---CCcEE----------EEeeEE--------------CCEEEEEEEeC
Confidence 3568899986 34456777777774 22211 111111 01368999987
Q ss_pred cCC-CHHHHHHHHHHHHHhhh
Q 020548 298 YLG-TLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 298 ~~~-~~~~~~~~l~~~l~~~~ 317 (324)
.. +++++++.+.++++++.
T Consensus 449 -~~~tt~~di~~~~~~i~~~~ 468 (475)
T 3k40_A 449 -SRFTQSEDMEYSWKEVSAAA 468 (475)
T ss_dssp -CTTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHH
Confidence 44 45666666666665543
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=159.34 Aligned_cols=184 Identities=14% Similarity=0.073 Sum_probs=126.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~-~~~~ 65 (324)
+|+..++.++++|||+|+++.|+|.++...+. ..|.++++++.. |++++++++++ ++++
T Consensus 232 ~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-----~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k 306 (755)
T 2vyc_A 232 GSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-----LTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTK 306 (755)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTG
T ss_pred HHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCcccc
Confidence 46888889999999999999999999888773 267888777542 79999999843 2454
Q ss_pred --------EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCC-------ccCCC--CcE------EEeCC
Q 020548 66 --------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS-------PARLG--ADV------VVHSI 121 (324)
Q Consensus 66 --------~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~-------~~~~~--~d~------~~~S~ 121 (324)
++++++| ||+|.+.|+++|+++|+++|+++++|++|+. +.+. +. .+ +|+ +++|+
T Consensus 307 ~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~ 384 (755)
T 2vyc_A 307 DKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHST 384 (755)
T ss_dssp GGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEET
T ss_pred ccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchh-cCCcCCccCCCeEEEECc
Confidence 8999998 7999999999999999999999999999943 2221 22 35 566 99999
Q ss_pred ccccccCCCeeEEEEEcChh---H-HHHHHHhhhhhhhccCCCCCHHHHHH---HhcCccc--HHHHHHHHHHHHHHHHH
Q 020548 122 SKFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMNPKVAFE---LSERIPH--LGLRMKEHCHRALIFAR 192 (324)
Q Consensus 122 sK~~~~~g~r~~G~i~~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~l~~ 192 (324)
||+++++.. +|+++.+.+ + ...+..... ....++++....+. +...+.. ...+.++..++.+++++
T Consensus 385 hK~L~g~~~--g~~i~~~~~~~~i~~~~~~~~~~---~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~ 459 (755)
T 2vyc_A 385 HKLLNALSQ--ASYIHVREGRGAINFSRFNQAYM---MHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQ 459 (755)
T ss_dssp TTSSSCCTT--CEEEEEECCBTCCCHHHHHHHHH---HTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcCC--eeeeeecCcccccCHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999876432 366655433 2 123332221 12233444332221 1111111 34566777888888888
Q ss_pred HHHhC
Q 020548 193 RMKKL 197 (324)
Q Consensus 193 ~L~~~ 197 (324)
.|++.
T Consensus 460 ~L~~l 464 (755)
T 2vyc_A 460 AMARL 464 (755)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=164.47 Aligned_cols=246 Identities=12% Similarity=0.081 Sum_probs=146.0
Q ss_pred CCEEEEcCCCchhHHHHHhhhcC-----c----ccceeEEEecCCC---------------HHHHHHhhh--cCCceEEE
Q 020548 15 GGHVVAARTLYGGTHALLTHFFP-----R----ACNITTTFVDISD---------------HEMVNSAIV--QGRTKVLY 68 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~-----~----~~g~~~~~~~~~d---------------~~~l~~~l~--~~~~~~v~ 68 (324)
||+|++.+|.|+++......... + .+...+..++.+| +++|+++++ .+++++|+
T Consensus 157 ~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi 236 (449)
T 2cjg_A 157 GTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFV 236 (449)
T ss_dssp CCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEE
Confidence 89999999999875442211100 0 0112445555444 234888874 26789999
Q ss_pred EecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 69 FESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 69 ~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
+++++||+|...+ +++|+++|++||+++|+||+|+++.... .....|++ |+||++ ++ |+++
T Consensus 237 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-----~i-G~~~ 308 (449)
T 2cjg_A 237 AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT-----QV-CGVM 308 (449)
T ss_dssp ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG-----SS-EEEE
T ss_pred EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc-----cE-EEEE
Confidence 9988999997665 9999999999999999999997663221 12346765 588998 44 9998
Q ss_pred cChhHHHHHHH--hhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhCCCceeCCC-CCCCchh
Q 020548 138 GPANLVNSMMD--LHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHH 212 (324)
Q Consensus 138 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~p~-~~~~~~~ 212 (324)
+++++++.+.+ ..... ........+..+..+...++.+ +...++..++++++.+.|++....+ |. +.
T Consensus 309 ~~~~~~~~l~~~~~~~~~-~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~--~~~~~----- 380 (449)
T 2cjg_A 309 AGRRVDEVADNVFAVPSR-LNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF--PAVVL----- 380 (449)
T ss_dssp ECGGGGGSTTCTTTSTTS-SCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHS--TTTSE-----
T ss_pred ECHHHhhhhhhcccCCcc-cccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC--CCcee-----
Confidence 88888775322 00000 0111112222222222222221 2345666788888888887642100 10 00
Q ss_pred HHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeE
Q 020548 213 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (324)
...+.|.++++++++......+.+.+.. .|++ +.|. + ++++
T Consensus 381 --------~~~~~g~~~~~~~~~~~~~~~~~~~l~~---~Gv~-----------v~~~---------------g--~~~i 421 (449)
T 2cjg_A 381 --------DPRGRGLMCAFSLPTTADRDELIRQLWQ---RAVI-----------VLPA---------------G--ADTV 421 (449)
T ss_dssp --------EEEEETTEEEEECSSHHHHHHHHHHHHH---TTEE-----------CEEE---------------T--TTEE
T ss_pred --------eEeeccEEEEEEECChHHHHHHHHHHHH---CCeE-----------EecC---------------C--CCEE
Confidence 0012577899999764456677777663 2331 1111 1 3789
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhh
Q 020548 293 RMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 293 R~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
|++++ ...+++.++.+.++|+++
T Consensus 422 Ri~~~-~~~t~e~i~~~l~~l~~~ 444 (449)
T 2cjg_A 422 RFRPP-LTVSTAEIDAAIAAVRSA 444 (449)
T ss_dssp EECCC-TTCCHHHHHHHHHHHHHH
T ss_pred EEECC-CCCCHHHHHHHHHHHHHH
Confidence 99988 766666666666665544
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=156.48 Aligned_cols=221 Identities=17% Similarity=0.161 Sum_probs=138.1
Q ss_pred chHHHHHHH---ccCCCCEEEEcCCCchhHHHHHhhhc---------Ccccce------eEEEecCCCHHHHHHhhhc--
Q 020548 2 SAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF---------PRACNI------TTTFVDISDHEMVNSAIVQ-- 61 (324)
Q Consensus 2 ~ai~~~~~~---~~~~gd~vl~~~p~y~~~~~~~~~~~---------~~~~g~------~~~~~~~~d~~~l~~~l~~-- 61 (324)
+|+..+++. +. +++.|++.+|+|+++........ +...|+ .+..++..|++++++++++
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 197 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRG 197 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCC
Confidence 356666664 44 45889999999987543221100 011232 3455666799999999842
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCCCCcEEEeCCccccccCCCe
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHSISKFISGGADI 131 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~~~d~~~~S~sK~~~~~g~r 131 (324)
+++++|++++.++++|.+.+ +++|.++ ++||+++|+||+|+++.... .....|++ |+||++++ |.+
T Consensus 198 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~ 273 (424)
T 2e7u_A 198 EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGG-GLP 273 (424)
T ss_dssp GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGT-TSS
T ss_pred CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhC-Ccc
Confidence 46788888766666998877 9999999 99999999999997663211 12245655 78999986 899
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHhC----CCceeCC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKL----GLKVLYP 204 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~----~~~~~~p 204 (324)
+ |++++++++++.+....... .....+.++..++.+...++.+ +...++..++++++.+.|++. +.....+
T Consensus 274 ~-G~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 351 (424)
T 2e7u_A 274 A-AAYAGRREIMEKVAPLGPVY-QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVN 351 (424)
T ss_dssp C-EEEEECHHHHTTBTTTSSBC-CCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred e-EEEEEcHHHHhhhcccCCcc-cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 6 99999998887765421100 0111122333322222222222 335566677888888888764 3311111
Q ss_pred CCCCCchhHHHHHHhccCCCcceEEEEEeCC-------------HHHHHHHHHHhhc
Q 020548 205 GLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMNYLQN 248 (324)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-------------~~~~~~~~~~l~~ 248 (324)
+.|.++++.+.. ......+.+.+..
T Consensus 352 -------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 389 (424)
T 2e7u_A 352 -------------------RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD 389 (424)
T ss_dssp -------------------EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT
T ss_pred -------------------eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH
Confidence 257799999863 2345567776653
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=152.29 Aligned_cols=259 Identities=10% Similarity=0.037 Sum_probs=166.3
Q ss_pred chHHHHHHHccCC--CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~--gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+++++.+++++ ||+|++...++.+. .+...+.+ .|..+..++.+ ++++++..+ ++++++|.+++..|
T Consensus 88 ~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~--~~~~~a~~-~G~~~~~~~~~~~~~~~~~~~~~~i-~~~t~lV~~~h~et 163 (377)
T 3e77_A 88 GQFSAVPLNLIGLKAGRCADYVVTGAWSA--KAAEEAKK-FGTINIVHPKLGSYTKIPDPSTWNL-NPDASYVYYCANET 163 (377)
T ss_dssp HHHHHHHHHHGGGSTTCEEEECCCSHHHH--HHHHHHTT-TSEEEECSCCCSSSCSCCCGGGCCC-CTTCSCEEEESEET
T ss_pred HHHHHHHHhccCCCCCCeEEEEECCHHHH--HHHHHHHH-hCCceEEeccCCCcCCCCChHHhcc-CCCccEEEEeCccC
Confidence 3678888888765 99998888776654 33345555 78877766543 456666667 78999999999999
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
.||.+.|+ +|+++|+++++|.++ +....+..+++ ++++|.+|++|++| .|+++.++++++.+.+....
T Consensus 164 ~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G---~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 164 VHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG---VTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp TTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT---CEEEEEETTSCSCCCTTSCG
T ss_pred chheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc---cEEEEEcHHHHhhccCCCCc
Confidence 99999998 478899999999997 22334444444 68899999998777 58887766654332211100
Q ss_pred ------h--hhccCCCCCHHHHHHHhcCcc------cHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHH
Q 020548 153 ------A--LMLLGPTMNPKVAFELSERIP------HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 153 ------~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~ 217 (324)
. .....+++.....+.+...++ .++...++..++++++.+.|++. ++.+. |.-+ .
T Consensus 234 ~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~-~~~~---~------ 303 (377)
T 3e77_A 234 VLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVC-PVEP---Q------ 303 (377)
T ss_dssp GGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEEC-CSCG---G------
T ss_pred hhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceec-CCCH---H------
Confidence 0 001123444333222222222 35566677889999999999998 44432 2201 0
Q ss_pred HhccCCCcceEEEEEeCCH---HHH-HHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 218 MANKEYGFGGLLCLDMETE---EKA-NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~~---~~~-~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
...+.+++|.+++. .+. ..+++.+.. .|+.. ..| .. ..+.+|
T Consensus 304 -----~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~---~Gi~~-~~g----------~~---------------~~g~iR 349 (377)
T 3e77_A 304 -----NRSKMNIPFRIGNAKGDDALEKRFLDKALE---LNMLS-LKG----------HR---------------SVGGIR 349 (377)
T ss_dssp -----GBCSSEEEEEESSTTCCHHHHHHHHHHHHH---TTEES-CBC----------CT---------------TTCSEE
T ss_pred -----HcCCcEEEEEcCCCCCchhHHHHHHHHHHH---CCcEE-eCC----------CC---------------cCCEEE
Confidence 01344699999841 222 456666653 34311 111 10 124699
Q ss_pred EEeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 294 MSVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 294 ~s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
+|++ ..++.++++.|.++|+++.++
T Consensus 350 iS~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 350 ASLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999988654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=157.08 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=122.1
Q ss_pred chHHHHHHHccC--------CCCEEEEcCCCchhHHHHHhhh----------cCcccceeEEEecC-----C-C------
Q 020548 2 SAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHF----------FPRACNITTTFVDI-----S-D------ 51 (324)
Q Consensus 2 ~ai~~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~----------~~~~~g~~~~~~~~-----~-d------ 51 (324)
+|+..+++.+.+ .+++|++.+|.|+++....... .+...+......+. + +
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 356666666542 3579999999998766443211 11111222222221 1 1
Q ss_pred --HHHHHHhhhc---CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC--------ccCCCC
Q 020548 52 --HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS--------PARLGA 114 (324)
Q Consensus 52 --~~~l~~~l~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~--------~~~~~~ 114 (324)
+++|++.+.+ +++++|++++++|++|...+ +++|+++|++||+++|+||+|+++... ......
T Consensus 205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~p 284 (476)
T 3i5t_A 205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284 (476)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCc
Confidence 7889888842 57899999999999997654 899999999999999999999766321 112246
Q ss_pred cEEEeCCccccccCC-CeeEEEEEcChhHHHHHHHhhh---hhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHH
Q 020548 115 DVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRAL 188 (324)
Q Consensus 115 d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 188 (324)
|+++ ++|.+++ | +|+ |++++++++++.+..... ........+..+..+++++..++.+ +...++..++.+
T Consensus 285 di~t--~sK~l~~-G~~pl-g~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~ 360 (476)
T 3i5t_A 285 DIIT--FAKGVTS-GYVPL-GGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360 (476)
T ss_dssp SEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred chhh--hhhhhcC-CCcCe-EEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7765 7899987 7 897 999999999888865310 0000111222333333322222222 234566677888
Q ss_pred HHHHHHHhCC
Q 020548 189 IFARRMKKLG 198 (324)
Q Consensus 189 ~l~~~L~~~~ 198 (324)
++.+.|+++.
T Consensus 361 ~l~~~L~~l~ 370 (476)
T 3i5t_A 361 YFAAALASLR 370 (476)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 8888888653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-18 Score=149.14 Aligned_cols=257 Identities=11% Similarity=0.015 Sum_probs=162.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+++++.+++++||+|++...++.+.. +.....+ .| ++..++.+ +++++++++ +++|++|.+++..
T Consensus 102 ~a~n~ai~~l~~~gd~v~~~~~~~~~~~--~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l-~~~t~lV~~~h~e 176 (386)
T 3qm2_A 102 GQFAGVPLNLLGDKTTADYVDAGYWAAS--AIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQL-SDNAAYLHYCPNE 176 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCC-CTTCSCEEECSEE
T ss_pred HHHHHHHHhccCCCCeEEEEeCCHHHHH--HHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhc-CCCCcEEEEECCc
Confidence 4788889998999999887666555543 3333444 67 67666543 456777777 7899999999999
Q ss_pred CCcccc-cChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 74 NPTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~-~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
|.||.+ .|+++|. +|+++++|.++ +....+..+++ ++++|.+|++|++| .|+++.++++.+.+.+..
T Consensus 177 t~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G---~g~l~v~~~~~~~~~~~~ 246 (386)
T 3qm2_A 177 TIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG---LTLVIVREDLLGKAHESC 246 (386)
T ss_dssp TTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT---EEEEEEEGGGCSCCCTTS
T ss_pred CCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc---cEEEEECHHHHhhhcccC
Confidence 999996 8898885 79999999997 23334444444 67799999998776 588887776643222110
Q ss_pred h---------hhh-hccCCCCCHHH-HHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHH
Q 020548 151 Q---------GAL-MLLGPTMNPKV-AFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 216 (324)
Q Consensus 151 ~---------~~~-~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~ 216 (324)
. ... +...+...... ...++..+. .++...++..+.++++.+.|++.++...... +.
T Consensus 247 p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~----~~----- 317 (386)
T 3qm2_A 247 PSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVA----QA----- 317 (386)
T ss_dssp CGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBC----GG-----
T ss_pred CcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCC----HH-----
Confidence 0 000 11122222222 222222221 2455666778899999999998865111111 00
Q ss_pred HHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEE
Q 020548 217 SMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s 295 (324)
.....+++|.+++ ..+ ..++..+.. .|+ .+..|.. ..+.+|+|
T Consensus 318 ------~rs~~iv~f~~~~~~~~-~~~~~~L~~---~gI-~~~~g~~-------------------------~~~~iRiS 361 (386)
T 3qm2_A 318 ------NRSRMNVPFQLADNTLD-KVFLEESFA---AGL-HALKGHR-------------------------VVGGMRAS 361 (386)
T ss_dssp ------GBCSSEEEEEESSGGGH-HHHHHHHHH---TTE-ECCBCCT-------------------------TTCSEEEE
T ss_pred ------HcCceEEEEECCCcccc-HHHHHHHHH---CCC-EEeCCCC-------------------------CcCeEEEE
Confidence 0134589999984 233 566666664 343 1111100 01459999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhhc
Q 020548 296 VGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
++ ..+++++++.|.++|+++.++
T Consensus 362 ~~-~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 362 IY-NAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHHHHh
Confidence 99 999999999999999988653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=156.22 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=118.4
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhh---------cCcccce------eEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHF---------FPRACNI------TTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~---------~~~~~g~------~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..++... ...+++|++.+|.|++........ .+...|+ .+..++.+|++++++++++ +
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 198 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG 198 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 3566666322 123589999999998643221100 0110111 2445556699999999843 2
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+++... ......|+ .|+||.+++ |+|+
T Consensus 199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di--~t~sK~~~~-G~~~ 275 (427)
T 3fq8_A 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDL--TTLGKIIGG-GLPV 275 (427)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSE--EEECGGGGT-TSSC
T ss_pred CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCCh--hhhhhhhhC-Ccce
Confidence 7899999999999999988 999999999999999999999766211 11223465 468899985 8997
Q ss_pred EEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHHHHHHHHhC
Q 020548 133 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~ 197 (324)
|++++++++++.+...... ......+..+..++.+...++.+ +...++..++.+++.+.|++.
T Consensus 276 -G~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (427)
T 3fq8_A 276 -GAYGGKREIMQLVAPAGPM-YQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp -EEEEECHHHHTTBTTTSSB-CCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEcHHHHHhhccCCCc-cccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877643210 00111222333332222212111 234455566666666666653
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.39 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=97.6
Q ss_pred chHHHHHHHcc--CCCCEEEEcCCCchhHHHHHh---------hhcCcc------cceeEEEecCCCHHHHHHhhhc--C
Q 020548 2 SAISSVLMQLC--SSGGHVVAARTLYGGTHALLT---------HFFPRA------CNITTTFVDISDHEMVNSAIVQ--G 62 (324)
Q Consensus 2 ~ai~~~~~~~~--~~gd~vl~~~p~y~~~~~~~~---------~~~~~~------~g~~~~~~~~~d~~~l~~~l~~--~ 62 (324)
+|+..+++... .++++|++.++.|++...... ...+.. ....+..++..|++++++++++ +
T Consensus 120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 4e77_A 120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQ 199 (429)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCC
Confidence 35666666332 356899999999987664210 000000 1123455666699999999843 4
Q ss_pred CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCee
Q 020548 63 RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADII 132 (324)
Q Consensus 63 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~ 132 (324)
++++|++++.++++|.+.+ +++|.++|+++|+++|+||+|+++... ......|++ |+||.+++ |+|+
T Consensus 200 ~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~~~-G~~~ 276 (429)
T 4e77_A 200 EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKIIGG-GMPV 276 (429)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGGGT-TSCC
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccccC-CCCe
Confidence 6788888877777788776 999999999999999999999766211 112235654 78999985 8997
Q ss_pred EEEEEcChhHHHHHHH
Q 020548 133 AGAVCGPANLVNSMMD 148 (324)
Q Consensus 133 ~G~i~~~~~~~~~l~~ 148 (324)
|++++++++++.+..
T Consensus 277 -G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 277 -GAFGGRREVMNALAP 291 (429)
T ss_dssp -EEEEECHHHHTTBTT
T ss_pred -EEEEECHHHHHHhcc
Confidence 999999998887754
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=148.88 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=118.5
Q ss_pred chHHHHHHHccCC-----C----CEEEEcCCCchhHHHHHhhhcCcccceeEEE------ec------C---CCHHHHHH
Q 020548 2 SAISSVLMQLCSS-----G----GHVVAARTLYGGTHALLTHFFPRACNITTTF------VD------I---SDHEMVNS 57 (324)
Q Consensus 2 ~ai~~~~~~~~~~-----g----d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~------~~------~---~d~~~l~~ 57 (324)
+|+..++.+++++ | |+|++..+.|..+...... .|..+.. ++ . .|+++|++
T Consensus 100 ~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 174 (467)
T 2oqx_A 100 GAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQI-----NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHH-----TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhc-----cCcceeeccccccccCCCCCCccCCcCHHHHHH
Confidence 5788888888888 8 9988774333433333321 1222211 11 1 28999999
Q ss_pred hhhc---CCceEEEEecCCCCc-cccc---ChHHHHHHHHhcCCEEEEcCCCCc------------C-CCCccC------
Q 020548 58 AIVQ---GRTKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTFSP------------L-VLSPAR------ 111 (324)
Q Consensus 58 ~l~~---~~~~~v~~~~~~npt-G~~~---~~~~i~~l~~~~~~~~ivD~~~~~------------~-~~~~~~------ 111 (324)
++.+ +++++|++++|+||+ |.+. ++++|+++|++||+++|+|+++.. . ......
T Consensus 175 ~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~ 254 (467)
T 2oqx_A 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY 254 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG
T ss_pred HHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh
Confidence 9943 479999999999998 7775 478999999999999999977621 1 111111
Q ss_pred CCCcEEEeCCccccccCCCeeEEEEEcChh-HHHHHHHhhhhh----hhccCCCCCHHHHHHHhcCcc-cH-HHHHHHHH
Q 020548 112 LGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGA----LMLLGPTMNPKVAFELSERIP-HL-GLRMKEHC 184 (324)
Q Consensus 112 ~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 184 (324)
...|+++.|+||+++++. ||+++++++ +++.+....... +....+.........+...+. .+ +..+++..
T Consensus 255 ~~~d~~~~s~sK~~g~~~---Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~ 331 (467)
T 2oqx_A 255 KYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331 (467)
T ss_dssp GGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCeEEEecccccCCCC---ceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHH
Confidence 236788999999998762 588887766 444443322210 001112223222211111111 11 23445567
Q ss_pred HHHHHHHHHHHhCCCceeCCC
Q 020548 185 HRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~p~ 205 (324)
++++++.+.|++.+..+. |.
T Consensus 332 ~~~~~l~~~L~~~~~~~~-~~ 351 (467)
T 2oqx_A 332 AQVQYLVDGLEEIGVVCQ-QA 351 (467)
T ss_dssp HHHHHHHHHHHHTTCCEE-EE
T ss_pred HHHHHHHHHHHHCCCeee-cC
Confidence 888999999998866555 54
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-19 Score=162.73 Aligned_cols=214 Identities=15% Similarity=0.131 Sum_probs=135.3
Q ss_pred chHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccce--eEEEecCCCHHHHHHhhhc--CCceEEEEecCCCC
Q 020548 2 SAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~--~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 75 (324)
+|+..+++.. ...+++|++.+++|++....... .+...|+ .+..++..|++++++++++ +++++|++++++++
T Consensus 167 eA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~s-g~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~ 245 (465)
T 2yky_A 167 EANLMALATATAITGRKTVLAFDGGYHGGLLNFAS-GHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGA 245 (465)
Confidence 3555555543 23459999999999886543310 0111344 3344455689999999932 68999999987777
Q ss_pred cccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCcc----CCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
+|.+.+ +++|+++|+++|+++|+||+|+ +...+. ..+....+.|++|++++ |+|+ ||+++++++++.+.
T Consensus 246 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t~sK~lg~-G~pi-G~v~~~~~i~~~l~ 322 (465)
T 2yky_A 246 GGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTTLGKYIGG-GMSF-GAFGGRRDLMERFD 322 (465)
Confidence 998766 8999999999999999999998 532111 11322334479999988 8997 99999999998887
Q ss_pred Hh--h--hhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCC
Q 020548 148 DL--H--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 223 (324)
Q Consensus 148 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 223 (324)
+. . ....++.++.+.+.++...+..+.. +...++..++.+++.+.|++...+...+. ...
T Consensus 323 ~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---------------~v~ 386 (465)
T 2yky_A 323 PARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGDRFRANLNRIAVENQAPL---------------QFT 386 (465)
Confidence 61 1 1112234444443333333332222 23455667777777777776532111111 112
Q ss_pred CcceEEEEEeCC
Q 020548 224 GFGGLLCLDMET 235 (324)
Q Consensus 224 ~~g~~~~~~l~~ 235 (324)
+.|.++++.+.+
T Consensus 387 g~G~~~~i~~~~ 398 (465)
T 2yky_A 387 GLGSLGTIHFSR 398 (465)
Confidence 478899998863
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-17 Score=148.86 Aligned_cols=206 Identities=19% Similarity=0.187 Sum_probs=125.9
Q ss_pred CHHHHHHhhhcC------CceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cCCC--
Q 020548 51 DHEMVNSAIVQG------RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG-- 113 (324)
Q Consensus 51 d~~~l~~~l~~~------~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~~~-- 113 (324)
|+++|++++ ++ ++++|++++++|++|.+.+ +++|+++|+++|+++|+||+|.++.... ...+
T Consensus 241 d~~~l~~~l-~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 241 CLEEVEDLI-VKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHH-HHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHH-HhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 578888888 43 7999999998999998876 9999999999999999999996554321 1123
Q ss_pred --CcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccH--HHHHHHHHHHHHH
Q 020548 114 --ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL--GLRMKEHCHRALI 189 (324)
Q Consensus 114 --~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 189 (324)
.|++ |+||.+ +. ||+++ ++++. .+..... ..++. ..+..++.++..++.+ +...++..+++++
T Consensus 320 ~~~Di~--t~sK~~-l~----GG~~~-~~~~~-~~~~~~~-~~T~~---~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 386 (472)
T 1ohv_A 320 DPADVM--TFSKKM-MT----GGFFH-KEEFR-PNAPYRI-FNTWL---GDPSKNLLLAEVINIIKREDLLSNAAHAGKV 386 (472)
T ss_dssp SCCSEE--EECGGG-SS----EEEEE-CGGGS-CSSSSSS-CCSSS---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCEE--EEcccc-cc----CCccC-chhhc-ccccccc-cCccC---ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5665 688995 32 47777 55542 1111111 11112 2222222222222221 2345666778888
Q ss_pred HHHHHHhCCCceeCCC-CCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceecc
Q 020548 190 FARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 268 (324)
Q Consensus 190 l~~~L~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~ 268 (324)
+.+.|++....+ |. +. ...+.|.++++++++......+.+++.. .|++ +.
T Consensus 387 l~~~L~~l~~~~--~~~v~-------------~~~~~g~~~~~~~~~~~~~~~~~~~l~~---~Gv~-----------~~ 437 (472)
T 1ohv_A 387 LLTGLLDLQARY--PQFIS-------------RVRGRGTFCSFDTPDESIRNKLISIARN---KGVM-----------LG 437 (472)
T ss_dssp HHHHHHHHHHHC--TTTCE-------------EEEEETTEEEEECSSHHHHHHHHHHHHH---TTEE-----------CE
T ss_pred HHHHHHHHHhhC--CCcEE-------------eecCCceEEEEEeCChhHHHHHHHHHHH---CCeE-----------Ee
Confidence 888887642111 11 00 0013577899988754456677777753 2321 11
Q ss_pred ccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 269 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
|. + .+.||++++ ...++++++.+.++|+.+-
T Consensus 438 ~~---------------g--~~~iRi~~~-~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 438 GC---------------G--DKSIRFRPT-LVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp EE---------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred cC---------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 11 1 378999999 8788887777777776653
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=133.12 Aligned_cols=253 Identities=9% Similarity=-0.026 Sum_probs=157.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+++++.+++ +||++.+...++.+.. +.....+ .|.++..++.+ ++++ + + ++++++|.+++..|
T Consensus 80 ~a~n~~~~~~~-~~~~~~~i~~~~~~~~--~~~~a~~-~G~~v~~~~~~~~g~~~~~~~~--~-l-~~~t~lv~~~~~e~ 151 (361)
T 3m5u_A 80 LQFAMIPMNLA-LNGVCEYANTGVWTKK--AIKEAQI-LGVNVKTVASSEESNFDHIPRV--E-F-SDNADYAYICSNNT 151 (361)
T ss_dssp HHHHHHHHHHC-CSSCEEEEECSHHHHH--HHHHHHH-TTCCEEEEEECTTTTSCSCCCC--C-C-CTTSSEEEEESEET
T ss_pred HHHHHHHHhcC-CCCeEEEEeCCHHHHH--HHHHHHH-cCCceEEEecccCcCCCcCChh--h-c-CCCCCEEEEeCCCC
Confidence 46788888888 8887633333233332 2222223 57777666532 3344 4 7 78999999999989
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH-hhhh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LHQG 152 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~-~~~~ 152 (324)
.||.+.|. +++ +|+++++|.++ .+...|.++ ..|++++|.||++|++| .|+++.++++.+.+.+ ....
T Consensus 152 ~tG~~~~~-----i~~-~~~~~~vD~~q-~~g~~~id~~~~d~~~~s~~K~~gp~G---~g~l~~~~~~~~~~~~~~~p~ 221 (361)
T 3m5u_A 152 IYGTQYQN-----YPK-TKTPLIVDASS-DFFSRKVDFSNIALFYGGVQKNAGISG---LSCIFIRKDMLERSKNKQIPS 221 (361)
T ss_dssp TTTEECSS-----CCC-CSSCEEEECGG-GTTSSCCCCTTEEEEEEETTTTSSCTT---CEEEEEEHHHHHHHHTCCCCG
T ss_pred CcceeCCc-----ccc-cCCEEEEEccc-ccCCCCCCcccCCEEEEechhccCCCc---cEEEEEcHHHHhhhcCCCCCc
Confidence 99998662 344 49999999997 222223333 47999999999998766 5999999888877764 1110
Q ss_pred h--------hhccCCCCCHHHHHH---Hhc---CcccHHHHHHHHHHHHHHHHHHHHhCC-C-ceeCCCCCCCchhHHHH
Q 020548 153 A--------LMLLGPTMNPKVAFE---LSE---RIPHLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 153 ~--------~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~-~-~~~~p~~~~~~~~~~~~ 216 (324)
. .....+++.....+. ++. ....++...++..+.++++.+.|++.+ . ....+. .
T Consensus 222 ~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~-----~----- 291 (361)
T 3m5u_A 222 MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADK-----K----- 291 (361)
T ss_dssp GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCG-----G-----
T ss_pred eeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCH-----H-----
Confidence 0 001113333332222 221 111366677778999999999999987 3 332111 0
Q ss_pred HHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 217 SMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
.....+++|.+++ ..+ ..+...+.. .|+ .+..|.. ..+.+|+
T Consensus 292 ------~rs~~ivsf~~~~~~~~~-~~~~~~L~~---~gI-~~~~g~~-------------------------~~g~iRi 335 (361)
T 3m5u_A 292 ------DRSLMNVSFNIAKNKDLE-PLFVKEAEE---AGM-IGLKGHR-------------------------ILGGIRA 335 (361)
T ss_dssp ------GBCSSEEEEEESSCTTHH-HHHHHHHHH---TTE-ECCBCCT-------------------------TTCSEEE
T ss_pred ------HcCCeEEEEECCCchhhh-HHHHHHHHH---CCC-EEecCCC-------------------------ccCeEEE
Confidence 0134589999985 222 456666664 343 2111100 0145999
Q ss_pred EeccCCCHHHHHHHHHHHHHhhhhc
Q 020548 295 SVGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
|++ ..++.++++.+.++|+++.++
T Consensus 336 S~~-~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 336 SIY-NALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred Ecc-CCCCHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999988653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=143.58 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=126.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHHhhhc-CCce
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ-GRTK 65 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~~l~~-~~~~ 65 (324)
+|+..++.++++|||+|+++.++|.++...+. ..|.++++++.. |++++++++++ ++++
T Consensus 222 ~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-----lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k 296 (715)
T 3n75_A 222 TANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-----MSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNAT 296 (715)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCcc
Confidence 36778888999999999999999999998773 368888887642 79999999943 3344
Q ss_pred ---EEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCCC-cCCCC-------ccCCC--CcEE---EeCCccccccCC
Q 020548 66 ---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-------PARLG--ADVV---VHSISKFISGGA 129 (324)
Q Consensus 66 ---~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~-~~~~~-------~~~~~--~d~~---~~S~sK~~~~~g 129 (324)
++++++| |++|.+.|+++|+++|++++ +++|++|+ ++.+. +...+ +|++ ++|+||+++++.
T Consensus 297 ~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~glt 373 (715)
T 3n75_A 297 WPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFS 373 (715)
T ss_dssp SCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCT
T ss_pred CceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCC
Confidence 8999999 99999999999999998764 79999994 33221 22222 5765 999999987641
Q ss_pred CeeEEEEEcChhH-HHHHHHhhhhhhhccCCCCCHHHHHHHhcC---cc--cHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 130 DIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSER---IP--HLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 130 ~r~~G~i~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
. +|++..+.++ .+.+..... ....++++....+.+... +. .-.++.++..++.+++++.|++.+
T Consensus 374 q--gs~i~v~~~i~~~~~~~~~~---~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~ 443 (715)
T 3n75_A 374 Q--ASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR 443 (715)
T ss_dssp T--CEEEEEESCCCHHHHHHHHH---HTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--eeEEEeCchhhHHHHHHHHH---hhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 4788665442 233333332 133444554433322212 12 123456777888888888888763
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=128.44 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=142.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhh--cCc-ccce--eEEEe--cCC----CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF--FPR-ACNI--TTTFV--DIS----DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~--~~~-~~g~--~~~~~--~~~----d~~~l~~~l~~~~~~~v~~~ 70 (324)
+|...++.++++|||+|+..+..++++...-... .+. ..|. +...+ +.. |.+++++.....++|+|++.
T Consensus 131 ~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G 210 (490)
T 3ou5_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp HHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEEC
Confidence 4677888999999999999998887765432100 000 0111 11111 111 88999988767799999987
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---- 140 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---- 140 (324)
...+| ...|+++++++|++.|+++++|.++ +++ ..+|+.. +|+++.|.||+|.||- ||+|..++
T Consensus 211 ~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~ 284 (490)
T 3ou5_A 211 TSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKA 284 (490)
T ss_dssp CSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEE
T ss_pred CccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCCC---ceEEEecccccc
Confidence 75554 6789999999999999999999997 443 4678876 8999999999997665 79997665
Q ss_pred -----------hHHHHHHHhhhhhhhccCCCCCHHHHHH--HhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 141 -----------NLVNSMMDLHQGALMLLGPTMNPKVAFE--LSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 141 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++.+.+..... .+...|+.+...++.+ +.+. ......+.++..+|++.|.+.|.+.|+++..-..
T Consensus 285 ~~~k~~~~~~~~~~kkin~aVF-Pg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgT 363 (490)
T 3ou5_A 285 VDPKTGREIPYTFEDRINFAVF-PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT 363 (490)
T ss_dssp ECC--CCEEECCCHHHHHHHHT-TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ccccccchhHHHHHHHHHhhcC-ccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCC
Confidence 46667766543 2223333333333222 1111 2346678888899999999999999997764331
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
...++.+.+. +...++..++...+
T Consensus 364 ------------------dnHlvLvDl~~~g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 364 ------------------DNHLVLVDLRPKGLDGARAERVLELVSI 391 (490)
T ss_dssp ------------------SSSEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred ------------------CceEEEEeccccCCCHHHHHHHHHHcCc
Confidence 2237778875 34556666666554
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=129.05 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=124.4
Q ss_pred HHHHHHHccCC----CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcC---CceEEE
Q 020548 4 ISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQG---RTKVLY 68 (324)
Q Consensus 4 i~~~~~~~~~~----gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~---~~~~v~ 68 (324)
+.+++.+.+++ ||+|+++..+|.+....+ .+.|.+++++++. |++++++++++. .+.+|+
T Consensus 147 ~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl-----iL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~ 221 (501)
T 3hl2_A 147 SLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM-----ITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIH 221 (501)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH-----HHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHcCcccCCCCEEEEecchHHHHHHHH-----HHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEE
Confidence 44455555653 499999999999999888 3478888888762 899999999542 233444
Q ss_pred EecCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC-C------CccCCC-CcEEEeCCccccccCCCeeEEEE-EcC
Q 020548 69 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-L------SPARLG-ADVVVHSISKFISGGADIIAGAV-CGP 139 (324)
Q Consensus 69 ~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~------~~~~~~-~d~~~~S~sK~~~~~g~r~~G~i-~~~ 139 (324)
.+++.|-.+.+.|+++|+++|++||++++||+||+... + .....| +|+++.|.||++-.|- . ||.+ ..+
T Consensus 222 ~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpI-G-G~ii~~~d 299 (501)
T 3hl2_A 222 STTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPV-G-GAIIAGFN 299 (501)
T ss_dssp EECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCS-S-CEEEEESC
T ss_pred ecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeec-C-ceEEEeCC
Confidence 44555545677899999999999999999999994432 1 122347 9999999999986652 2 2444 456
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+++++.+.....+ ....+++ +..++.+. +.+.+...+++..++++++.+.|++.
T Consensus 300 ~e~l~~~~~~yPG---r~S~Sps-ldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 300 DSFIQEISKMYPG---RASASPS-LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp HHHHHHHHHTSCS---CBCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---CCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788777544321 1111122 22333222 33456777888889999999998885
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=122.64 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=117.5
Q ss_pred CCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--------CHHHHHHhhhcC---CceEEEEecCCCCcccccChH
Q 020548 15 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQG---RTKVLYFESISNPTLAVANIP 83 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~l~~~---~~~~v~~~~~~nptG~~~~~~ 83 (324)
++.|+++..+|.+....+ .+.|+.+++++.. |++++++++++. ++.+|+.+...+.+|.+.|++
T Consensus 144 ~~~viv~r~aHkSv~kAl-----~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~ 218 (450)
T 3bc8_A 144 AKYIIWPRIDQKSCFKSM-----VTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLE 218 (450)
T ss_dssp CCEEEEECCCCHHHHHHH-----HHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHH
T ss_pred CCEEEEECCcHHHHHHHH-----HHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHH
Confidence 899999999999999888 3478888777651 899999999542 334444454555567889999
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCC-C-C-----ccCC-CCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhhhhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLV-L-S-----PARL-GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGAL 154 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~-~-~-----~~~~-~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~~ 154 (324)
+|+++|++||++++||++|+... + . ..+. ++|+++.|.||++..+-.. +++. .+++..+.+.....+
T Consensus 219 ~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~--~~l~~rd~~~~~~~~~~~~g-- 294 (450)
T 3bc8_A 219 ELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG--AIIAGFNEPFIQDISKMYPG-- 294 (450)
T ss_dssp HHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSC--EEEEESCHHHHHHHHHHSCS--
T ss_pred HHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhcc--EEEEecCHHHHHHHHHHhhc--
Confidence 99999999999999999995432 1 1 1222 7999999999998776433 5554 577777766543211
Q ss_pred hccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 155 MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
....+++ +..+..+. +.+.+.+.+++..++++++.+.|++.+
T Consensus 295 -~~s~Sps-L~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 295 -RASASPS-LDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA 338 (450)
T ss_dssp -CBCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1112222 33333222 223355556666788888888887654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=124.54 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=124.5
Q ss_pred CCEEEEcCCCchhHHHHHhh-hcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----hHHHHH
Q 020548 15 GGHVVAARTLYGGTHALLTH-FFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSR 87 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~~-~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----~~~i~~ 87 (324)
.++|+....+|++....... ..+.........++.+|++.+++.+++ +++++|+++++++..|.+.+ +++|++
T Consensus 169 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~ 248 (454)
T 4ao9_A 169 RRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRE 248 (454)
T ss_dssp CCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHH
T ss_pred CCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHH
Confidence 47899999888874322100 001111234455667799999998843 46899999998888998876 899999
Q ss_pred HHHhcCCEEEEcCCCCcCC-----CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh---hhhccCC
Q 020548 88 LAHDKGVTVVVDNTFSPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG---ALMLLGP 159 (324)
Q Consensus 88 l~~~~~~~~ivD~~~~~~~-----~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~---~~~~~~~ 159 (324)
+|++||+++|+||++++-. ..-.....|+++ ++|.+++ |.++ |.+.+++++++.+.+.... ..++.+
T Consensus 249 lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t--~gK~lgg-G~Pi-ga~~~~~ei~~~~~~~~~~~~h~~T~~g- 323 (454)
T 4ao9_A 249 SATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT--LGKYIGG-GMSF-GAFGGRADVMALFDPRTGPLAHSGTFNN- 323 (454)
T ss_dssp HHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE--EEGGGGT-TSSC-EEEEECHHHHGGGCTTTCSCCCCCTTTT-
T ss_pred HHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE--eccccCC-CCcc-eeeeeHHHHHHHHhhccCCccccCCCCC-
Confidence 9999999999999995321 111233578887 8999987 7887 9999999998877542210 111222
Q ss_pred CCCHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 160 TMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
++...+++. .+..+.. ++..++..++.++|.+.|++...+...+. ...|.|.++.+++.
T Consensus 324 nPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~~~~~---------------~vrg~G~m~gi~f~ 383 (454)
T 4ao9_A 324 NVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCANEGVAM---------------QFTGIGSLMNAHFV 383 (454)
T ss_dssp CHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHHTBSC---------------EEEEETTEEEEESC
T ss_pred CHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhhCCCCE---------------EEeeeceEEEEEEe
Confidence 222222222 2222322 34455666667777777765421111121 12257888888873
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8e-13 Score=119.82 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=102.9
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
+++++|++++.+...|.+.+ +++|.++|++||+++|+||++.++.. .......|+++ ++|.+++ |.
T Consensus 225 ~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lgg-g~ 301 (456)
T 4atq_A 225 DQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAG-GL 301 (456)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT-TS
T ss_pred CceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhh--hhhcccC-cC
Confidence 57899999999888888854 88999999999999999999977632 12233578888 7899976 78
Q ss_pred eeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCcee---CCC
Q 020548 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVL---YPG 205 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~---~p~ 205 (324)
++ |.+++++++++.+.+... .. .+++.+ ..++.++..++.++ ...++..+..+++.+.|+++..++. .|.
T Consensus 302 P~-~av~~~~~i~~~~~~~~~-~~-Tf~gnp--la~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~ 376 (456)
T 4atq_A 302 PL-SAITGRADLLDAVHPGGL-GG-TYGGNP--VACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSV 376 (456)
T ss_dssp SC-EEEEEEHHHHTTSCTTSS-CC-SSSSCH--HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----C
T ss_pred Cc-eeeEecHHHHhcccccCC-CC-CCCCCh--HHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 97 888888888877754433 11 223333 33333332333222 2333444445555555554311110 011
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeC-------CHHHHHHHHHHhhc
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKANRLMNYLQN 248 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-------~~~~~~~~~~~l~~ 248 (324)
+ .+..|.|.++.+++. +.+...++.+.+..
T Consensus 377 v-------------~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~ 413 (456)
T 4atq_A 377 V-------------GDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK 413 (456)
T ss_dssp E-------------EEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH
T ss_pred e-------------EEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH
Confidence 0 023367889999984 23345566666553
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=109.92 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=104.4
Q ss_pred HHHHHhhh---cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEE
Q 020548 53 EMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVV 118 (324)
Q Consensus 53 ~~l~~~l~---~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~ 118 (324)
+++++.+. .+++++|++++++...|.+.+ +++|+++|++||+++|+||++++|... -.....|+++
T Consensus 223 ~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t 302 (473)
T 4e3q_A 223 RELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII 302 (473)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE
T ss_pred HHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH
Confidence 34455442 246899999999888888854 889999999999999999999877421 1233578888
Q ss_pred eCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHH
Q 020548 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-----ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFA 191 (324)
Q Consensus 119 ~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ 191 (324)
++|.+++...++ |.++.++++++.+...... .+...++. +..++.++..++.++ ...++..+..+++.
T Consensus 303 --~~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gn--pla~Aaala~L~~i~~~~l~~~~~~~g~~l~ 377 (473)
T 4e3q_A 303 --SSKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHGFTASGH--PVGCAIALKAIDVVMNEGLAENVRRLAPRFE 377 (473)
T ss_dssp --ECGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCCCTTTTC--HHHHHHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred --hcccccCCCCCc-ccccccHHHHHHhccccccccccccCCCCCCC--cchhhhhhhhhhhhccccHHHHHHHHHHHHH
Confidence 899998855897 9999999999888654211 01122222 333333333333332 23455566667777
Q ss_pred HHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 192 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 192 ~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+.|+++... |.+. +..|.|.++.+++.
T Consensus 378 ~~L~~l~~~---~~v~-------------~vRG~Gl~~gielv 404 (473)
T 4e3q_A 378 ERLKHIAER---PNIG-------------EYRGIGFMWALEAV 404 (473)
T ss_dssp HHHHHHTTS---TTEE-------------EEEEETTEEEEEEC
T ss_pred HHHHHHhcC---CCee-------------EEeecceEEEEEEe
Confidence 777764321 1110 22357889999874
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-11 Score=114.30 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHhhh-------cCCceEEEEecC-CCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCC
Q 020548 53 EMVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG 113 (324)
Q Consensus 53 ~~l~~~l~-------~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~ 113 (324)
++|++.++ .+++++|++++. ++..|...+ +++|+++|++||+++|+||++.++.... ....
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~ 656 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSC
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCC
Confidence 56777763 246889999996 899898864 8999999999999999999997663211 1234
Q ss_pred CcEEEeCCccccccCC-CeeEEEEEcChhHHHHHHH
Q 020548 114 ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 114 ~d~~~~S~sK~~~~~g-~r~~G~i~~~~~~~~~l~~ 148 (324)
.|+++ ++|.+++ | .++ |++++++++++.+..
T Consensus 657 PDiit--lsK~L~g-G~~Pl-gav~~~~~i~~~~~~ 688 (831)
T 4a0g_A 657 PDIAC--FAKLLTG-GMVPL-AVTLATDAVFDSFSG 688 (831)
T ss_dssp CSEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTCS
T ss_pred CcEEE--Eeccccc-CccCc-EEEEECHHHHHHHhc
Confidence 67775 9999987 5 797 999999998887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 324 | ||||
| d1pffa_ | 331 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 3e-48 | |
| d1y4ia1 | 397 | c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci | 2e-47 | |
| d1gc0a_ | 392 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom | 5e-45 | |
| d2ctza1 | 421 | c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry | 4e-44 | |
| d1qgna_ | 398 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C | 3e-34 | |
| d1e5ea_ | 394 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 4e-34 | |
| d1n8pa_ | 393 | c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba | 2e-33 | |
| d1ibja_ | 380 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale | 1e-32 | |
| d1cs1a_ | 384 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E | 1e-31 | |
| d1cl1a_ | 391 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche | 2e-20 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-11 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 3e-05 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 6e-05 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 1e-04 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 5e-04 |
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Score = 162 bits (411), Expect = 3e-48
Identities = 87/316 (27%), Positives = 149/316 (47%), Gaps = 14/316 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ + +G H+++ LYG THAL H + + F+D++ + +
Sbjct: 23 MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHLK 81
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
V + + + + + K + V+VDNTF SP++ +P LG D+VVH
Sbjct: 82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVH 141
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+I+G D++ A + QG + G ++P A+ ++ L +R
Sbjct: 142 SATKYINGHTDVV--AGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMR 199
Query: 180 MKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
+K A A + K KV YPGL DHP HE+ K FG ++ D++ E
Sbjct: 200 VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ---MKMFGSMIAFDVDGLE 256
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
KA ++++ +AVSLG E+L+ S T + + EE+ AG++ L+R+SVG
Sbjct: 257 KAKKVLDNC----HVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG 312
Query: 298 YLGTLDQRWSQFEKAL 313
+ ++AL
Sbjct: 313 -CENVQDIIDDLKQAL 327
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Score = 162 bits (411), Expect = 2e-47
Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 16/319 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD E + +A+
Sbjct: 88 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAGKPEEIRAAM- 145
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P +LGAD+VVH
Sbjct: 146 RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVH 205
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S++K+I+G D+I G + G ++ G + G M+P A+ + LG+R
Sbjct: 206 SVTKYINGHGDVIGGIIVGKQEFIDQAR--FVGLKDITGGCMSPFNAWLTLRGVKTLGIR 263
Query: 180 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-METE 236
M+ HC AL AR ++ +V YPGL HP + + + GG++ +
Sbjct: 264 MERHCENALKIARFLEGHPSITRVYYPGLSSHPQY---ELGQRQMSLPGGIISFEIAGGL 320
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
E R++N ++ +AVSLG ETL+ S T S + EE+ AGI+ GL+R+SV
Sbjct: 321 EAGRRMINSVE----LCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSV 376
Query: 297 GYLGTLDQRWSQFEKALSR 315
G L + + E A+ +
Sbjct: 377 G-LEDPEDIINDLEHAIRK 394
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Score = 155 bits (393), Expect = 5e-45
Identities = 114/317 (35%), Positives = 165/317 (52%), Gaps = 16/317 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI+S L L G V+ TLYG T A L H + VD++D + + +A+
Sbjct: 84 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFL-HHGIGEFGVKLRHVDMADLQALEAAM- 141
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P LGAD+VVH
Sbjct: 142 TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVH 201
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K++SG DI AG V G LV+ + QG + G ++P A L I L LR
Sbjct: 202 SATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAALLMRGIKTLNLR 259
Query: 180 MKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
M HC A + A + + + YPGL P + + GG++ +++
Sbjct: 260 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQY---TLARQQMSQPGGMIAFELKGGI 316
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
R MN LQ ++ AVSLG E+L S T S EE+A GIS GLVR+SV
Sbjct: 317 GAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSV 372
Query: 297 GYLGTLDQRWSQFEKAL 313
G L +D + ++AL
Sbjct: 373 G-LEDIDDLLADVQQAL 388
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Score = 154 bits (389), Expect = 4e-44
Identities = 89/347 (25%), Positives = 148/347 (42%), Gaps = 41/347 (11%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+A L L +G ++V+ LYGGT R E +
Sbjct: 83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALT- 141
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV 118
+T+ + ESI NP L + ++ L++ A +KGV ++VDNTF +L P GA +V
Sbjct: 142 DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVT 201
Query: 119 HSISKFISGGADIIAGAVCGPANLVNS----------------------------MMDLH 150
HS++K++ G +IAGA+ N ++
Sbjct: 202 HSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261
Query: 151 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLED 208
L G + P A+ + + L LR + H L A + + V YPGL
Sbjct: 262 VDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH 321
Query: 209 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267
HPHH+ + G +L ++ E A R ++ L+ + ++G TL
Sbjct: 322 HPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLIS----HLANVGDTRTLAI 375
Query: 268 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314
S+T S+L+ EE+A AG+S +VR+SVG L ++ ++ ++AL+
Sbjct: 376 HPASTTHSQLSPEEQAQAGVSPEMVRLSVG-LEHVEDLKAELKEALA 421
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 127 bits (319), Expect = 3e-34
Identities = 95/319 (29%), Positives = 159/319 (49%), Gaps = 17/319 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M A + +L+ L +GGH+V Y T + P+ IT T +D +D + A+
Sbjct: 92 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELALN 150
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
Q + + + ES +NP L +I +S+L H+KG V +D TF +PL LGAD+V+H
Sbjct: 151 QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLH 210
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KF+ G D++AG + GP LV+ + +LH +LG +NP A+ + + L LR
Sbjct: 211 SATKFLGGHNDVLAGCISGPLKLVSEIRNLH----HILGGALNPNAAYLIIRGMKTLHLR 266
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
+++ AL A ++ V YPGL+ HP H + K GFGG + +++
Sbjct: 267 VQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDL 323
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
+ ++ L+ ++A S G E+++ + +L+ ++A GI LVR S
Sbjct: 324 LTTAKFVDALK----IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSF 379
Query: 297 GYLGTLDQRWSQFEKALSR 315
G + D + +AL
Sbjct: 380 G-VEDFDDLKADILQALDS 397
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Score = 126 bits (317), Expect = 4e-34
Identities = 96/321 (29%), Positives = 164/321 (51%), Gaps = 17/321 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M AI++ ++ + +G H+++ LYG THAL H + E+ +
Sbjct: 84 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEV--KKHM 141
Query: 61 QGRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVV 118
+ TK++YFE+ +NPTL + + +GV V+ DNTF SP++ +P G DVVV
Sbjct: 142 KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVV 201
Query: 119 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 178
HS +K+I+G D++AG +CG A+ G + G ++P A+ ++ + L +
Sbjct: 202 HSATKYINGHTDVVAGLICGKAD--LLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNI 259
Query: 179 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-ET 235
RMK A+ A +K KV YPG EDH H++ + +G ++ +
Sbjct: 260 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDI---AKKQMRMYGSMITFILKSG 316
Query: 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 295
E A +L++ L+ +AVSLG E+L+ S T + + EE+ AGI+ G++R+S
Sbjct: 317 FEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLS 372
Query: 296 VGYLGTLDQRWSQFEKALSRM 316
VG + D+ + F++ L +
Sbjct: 373 VG-IEDADELIADFKQGLDAL 392
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 124 bits (313), Expect = 2e-33
Identities = 75/326 (23%), Positives = 140/326 (42%), Gaps = 20/326 (6%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+ +++L G H V+ +YGGTH T T+ D+ + ++
Sbjct: 80 SATTATILQS-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLP---QLI 135
Query: 61 QGRTKVLYFESISNP----TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGAD 115
+ TK+++ E+ +NP T + + A + V +VVDNTF SP + +P GAD
Sbjct: 136 KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGAD 195
Query: 116 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH 175
+VVHS +K+I+G +D++ G + + + Q A+ G +P A+ +
Sbjct: 196 IVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI---GAIPSPFDAWLTHRGLKT 252
Query: 176 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF--GGLLCLDM 233
L LR+++ A A + V+ H + + GG++ +
Sbjct: 253 LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRI 312
Query: 234 E-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 292
+ E A++ + + +A SLG E+L+ T + E + +G+ LV
Sbjct: 313 KGGAEAASKFASSTR----LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLV 368
Query: 293 RMSVGYLGTLDQRWSQFEKALSRMQD 318
R+SVG + D ++AL + +
Sbjct: 369 RISVG-IEDTDDLLEDIKQALKQATN 393
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 122 bits (307), Expect = 1e-32
Identities = 85/318 (26%), Positives = 151/318 (47%), Gaps = 17/318 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
M+A+S+ + L +G +VA +YGG+ LL+ PR+ + E+ +
Sbjct: 74 MAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAA--AI 130
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+TK+++ ES +NP +++I ++S +AH +G V+VDN+ SP++ P LGAD+V+H
Sbjct: 131 GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMH 190
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +KFI+G +D++AG + + + Q G + P + I + LR
Sbjct: 191 SATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ---NSEGSGLAPFDCWLCLRGIKTMALR 247
Query: 180 MKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 237
+++ A A + KV Y GL DHP H L S A +
Sbjct: 248 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVF---SFITGSVA 304
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ L+ + ++ +AVS G ++L+S + + + AE + G++ LVR+S G
Sbjct: 305 LSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 360
Query: 298 YLGTLDQRWSQFEKALSR 315
+ +D S + A
Sbjct: 361 -IEDVDDLISDLDIAFKT 377
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 1e-31
Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 17/321 (5%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
MSAI V G +VA YGG++ L R C + + A +
Sbjct: 75 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALR--AAL 132
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVH 119
+ K++ ES SNP L V +I ++ LA + G VVDNTF SP + +P LGAD+V+H
Sbjct: 133 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 192
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
S +K+++G +D++AG V V + + + + G + ++ L + L R
Sbjct: 193 SCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVPR 249
Query: 180 MKEHCHRALIFAR--RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236
M+ A + + + L K+ +P L ++ HE+ GFG +L +++ E
Sbjct: 250 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFELDGDE 306
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
+ R + L +A SLG E+L+S + + T + + E +A AGIS L+R+S
Sbjct: 307 QTLRRFLGGLS----LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIST 362
Query: 297 GYLGTLDQRWSQFEKALSRMQ 317
G + + + E
Sbjct: 363 G-IEDGEDLIADLENGFRAAN 382
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Score = 88.5 bits (218), Expect = 2e-20
Identities = 53/319 (16%), Positives = 118/319 (36%), Gaps = 14/319 (4%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 60
+A+++ ++ G HV+ T Y + + + T+ F + ++V
Sbjct: 83 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQP 142
Query: 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA-RLGADVVVH 119
+ L + + + +++DNT++ VL A G DV +
Sbjct: 143 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQ 202
Query: 120 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 179
+ +K++ G +D + G A + + L+G ++ A+ S + LG+R
Sbjct: 203 AATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQMVDADTAYITSRGLRTLGVR 258
Query: 180 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPH--HELLKSMANKEYGFGGLLCLDMETEE 237
+++H +L A + + HE K G + E
Sbjct: 259 LRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNE 318
Query: 238 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297
+ ++ ++ MA S G YE+L+ + + + + + S L+R+ +G
Sbjct: 319 ELANYLDNFSLFS----MAYSWGGYESLILANQPEHIAAIRPQGE--IDFSGTLIRLHIG 372
Query: 298 YLGTLDQRWSQFEKALSRM 316
L +D + + +R+
Sbjct: 373 -LEDVDDLIADLDAGFARI 390
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 62.9 bits (152), Expect = 1e-11
Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 19/220 (8%)
Query: 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT--FVDISDHEMVNSA 58
A+ ++ + G V+ + ++ + T + D E V A
Sbjct: 101 SQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160
Query: 59 IVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLV-----LSPA 110
I RTK L S +NPT AV L L A + +V D + L+ SP
Sbjct: 161 I-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPG 219
Query: 111 RLGAD--VVVHSISK-FISGGADIIAGAVCGPANLVNSMMDLHQGAL---MLLGPTMNPK 164
R+ + + V+ +K F G I G CGP ++ +M + + + + +
Sbjct: 220 RVAPEHTLTVNGAAKAFAMTGWRI--GYACGPKEVIKAMASVSRQSTTSPDTIAQWATLE 277
Query: 165 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 204
+ + + + R + + LGLK + P
Sbjct: 278 ALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP 317
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 47/308 (15%), Positives = 98/308 (31%), Gaps = 30/308 (9%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD---ISDHEMVNSAI 59
AI G H++ ++T + +T I D + + +A+
Sbjct: 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM 140
Query: 60 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD--NTFSPLVLSPARLGADVV 117
+ T ++ ++N V +I + + +G+ VD + L + ++L D++
Sbjct: 141 -RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLM 199
Query: 118 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 177
S K GA+ + G G + +G
Sbjct: 200 SFSGHKI---YGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQ------IVG 250
Query: 178 LRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236
+ + + + GL L+ G++D L + + + +E E
Sbjct: 251 MGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGE 310
Query: 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296
L + +AVS G T S S L ++ ++ +R S+
Sbjct: 311 SLIMALKD----------LAVSSGSACTSASLEPSYVLRALGLNDE----LAHSSIRFSL 356
Query: 297 GYLGTLDQ 304
G T ++
Sbjct: 357 GRFTTEEE 364
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 42.0 bits (98), Expect = 6e-05
Identities = 23/215 (10%), Positives = 63/215 (29%), Gaps = 15/215 (6%)
Query: 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 71
+ VVA Y +F + + VN + S
Sbjct: 152 DAPESKVVAHAPFYPVFREQTKYF-----DKKGYVWAGNAANYVNV--SNPEQYIEMVTS 204
Query: 72 ISNPTLAVA-NIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGAD 130
+NP + + + + +D V ++P+ D+++ ++SKF
Sbjct: 205 PNNPEGLLRHAVIKGCKSIYDM---VYYWPHYTPIKYKADE---DILLFTMSKFTGHSGS 258
Query: 131 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 190
A+ ++ N++++ P + ++ + + + K F
Sbjct: 259 RFGWALIKDESVYNNLLNYMT-KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF 317
Query: 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225
+ + + L+ + ++ +
Sbjct: 318 GFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 20/213 (9%)
Query: 63 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--------PLVLSPARLGA 114
L+ + + EL+ + + + VV+N + +
Sbjct: 194 HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRI 253
Query: 115 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 174
D V S+ K G A + Q + + + ++ +
Sbjct: 254 DAFVQSLDKNFMVP--------VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLL 305
Query: 175 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 234
LG + LK L + + LL++ N L +D
Sbjct: 306 SLGCSGYRKLLKERKEMFVYLSTQLK----KLAEAHNERLLQTPHNPISLAMTLKTIDGH 361
Query: 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 267
++ +L + L G AV LG +T+
Sbjct: 362 HDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSG 394
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 39.0 bits (90), Expect = 5e-04
Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 31/258 (12%)
Query: 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF--PRACNITTTFVDISDHEMVNSAIV 60
+I ++++ + G V+ + ++ P T E + AI
Sbjct: 102 SIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT 161
Query: 61 QGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDNTF-----------SPLV 106
+TK+L F + SNPT + ++++A + G+ V+ D + S
Sbjct: 162 P-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGA 220
Query: 107 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 166
SP VV +K G + GP LV + + +
Sbjct: 221 ASPEAYERSVVCSGFAK-TYAMTGWRVGFLAGPVPLVKAATKIQGHSTS----------- 268
Query: 167 FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226
+ + + E+ + + + L P E K Y F
Sbjct: 269 -NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF-YMFP 326
Query: 227 GLLCLDMETEEKANRLMN 244
+ + + + L++
Sbjct: 327 SIAKTGRSSLDFCSELLD 344
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.98 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.98 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.98 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.96 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.96 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.96 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.96 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.95 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.95 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.95 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.95 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.95 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.95 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.94 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.94 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.94 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.93 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.92 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.92 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.92 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.9 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.9 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.89 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.89 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.89 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.89 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.88 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.88 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.87 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.87 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.85 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.84 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.81 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.8 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.8 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.77 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.77 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.77 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.75 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.74 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.73 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.71 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.67 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.67 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.65 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.62 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.62 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.61 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.6 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.59 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.59 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.57 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.57 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.54 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.54 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.41 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.41 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.4 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.37 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.36 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.35 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.35 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.35 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.35 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.33 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.33 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.16 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.15 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.82 |
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=8.4e-51 Score=355.68 Aligned_cols=303 Identities=38% Similarity=0.656 Sum_probs=282.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|.+....++..+++ +|+++.+++..|++++++++ +++|++|++++|.||+..+.
T Consensus 88 maAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~-~Gi~~~~vd~~d~~~~~~~i-~~~Tklv~~Esp~NP~l~v~ 165 (397)
T d1y4ia1 88 ISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAGKPEEIRAAM-RPETKVVYIETPANPTLSLV 165 (397)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHhhccCCCCeeeeecccccccchhhhcccCC-CceEeeccCCCCHHHHHHhc-CCCCcEEEecCCcccceeec
Confidence 68999999999999999999999999999999888887 89999999999999999999 89999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH--Hhhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM--DLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~--~~~~~~~~~~ 157 (324)
|+++|+++|+++|++++||+++ .++.+.|+++|+|+++.|++|+++|++..++|.++++++.+..++ ..+. ..
T Consensus 166 Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~----~~ 241 (397)
T d1y4ia1 166 DIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD----IT 241 (397)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH----TT
T ss_pred ccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHh----Cc
Confidence 9999999999999999999999 778899999999999999999999999999999999998877654 3333 56
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 235 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 235 (324)
|..+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++|+|.++.++.+ +.|++++|++++
T Consensus 242 G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~---g~gg~~sf~~~~ 318 (397)
T d1y4ia1 242 GGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPGGIISFEIAG 318 (397)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCS---SCCSEEEEEETT
T ss_pred CCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccC---CCCeEEEEEecC
Confidence 899999999999999999999999999999999999999987 899999999999999999886 578999999985
Q ss_pred -HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 236 -EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 236 -~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
.+.+.+|++.|+.++ +++|+|+.++++++|..+.|..++++.+...|++++.||||+| .|+.++++++|+++|+
T Consensus 319 ~~~~~~~f~~~L~l~~----~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvG-lEd~~DLi~Dl~~AL~ 393 (397)
T d1y4ia1 319 GLEAGRRMINSVELCL----LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDIINDLEHAIR 393 (397)
T ss_dssp HHHHHHHHHHTCSSSE----ECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCccc----eeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEec-cCCHHHHHHHHHHHHH
Confidence 455789999999744 5899999999999999999999999999999999999999999 9999999999999998
Q ss_pred hhh
Q 020548 315 RMQ 317 (324)
Q Consensus 315 ~~~ 317 (324)
+.+
T Consensus 394 ~a~ 396 (397)
T d1y4ia1 394 KAT 396 (397)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.1e-50 Score=354.92 Aligned_cols=302 Identities=38% Similarity=0.591 Sum_probs=266.3
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++..|++....++...++ +|+++.++|..|++++++++ +++|++|++++|.||+..+.
T Consensus 84 maAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~-~Gi~~~~~d~~d~~~~~~ai-~~~t~lv~~Esp~NP~l~v~ 161 (392)
T d1gc0a_ 84 MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMA 161 (392)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhcc-CCcccccCCccCHHHHHHhC-CCCCeEEEecccccceeeec
Confidence 68999999999999999999999999999999988888 89999999999999999999 89999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH--hhhhhhhcc
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--LHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~--~~~~~~~~~ 157 (324)
|+++|+++||++|++++||+++ .++.+.|+++|+|+++.|++|+++|++..++|.++++++.++.++. .+. ..
T Consensus 162 Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~----~~ 237 (392)
T d1gc0a_ 162 DIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD----MT 237 (392)
T ss_dssp CHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH----HT
T ss_pred chHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHH----cc
Confidence 9999999999999999999999 6788999999999999999999999999999999999988876643 333 57
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
|..+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|.++++|+|.++.++.+ +.|++++|+++
T Consensus 238 G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~gg~~sf~l~~ 314 (392)
T d1gc0a_ 238 GAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIAFELKG 314 (392)
T ss_dssp CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTTEEEEEETT
T ss_pred CCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCccccccccccc---CCCcEEEEEEeC
Confidence 999999999999999999999999999999999999999987 899999999999999999886 56889999997
Q ss_pred CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 020548 235 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 314 (324)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~ 314 (324)
+.+.+.+|++.|+.++ +++|+|+.++++++|....|..+++.++...|+++++||+|+| .|+.++++++|+++|+
T Consensus 315 ~~~~~~~f~~~L~l~~----~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVG-lEd~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 315 GIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADVQQALK 389 (392)
T ss_dssp HHHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcce----EeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEee-eCCHHHHHHHHHHHHH
Confidence 4466789999999743 5899999999999999999999999999999999999999999 9999999999999998
Q ss_pred hh
Q 020548 315 RM 316 (324)
Q Consensus 315 ~~ 316 (324)
+.
T Consensus 390 aa 391 (392)
T d1gc0a_ 390 AS 391 (392)
T ss_dssp HH
T ss_pred hh
Confidence 74
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=5.1e-50 Score=351.23 Aligned_cols=303 Identities=31% Similarity=0.555 Sum_probs=283.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|++....++...++ +|+++.+++..+.++.++.+.++++++|++++|.||+..+.
T Consensus 92 MaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~-~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~ 170 (398)
T d1qgna_ 92 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCV 170 (398)
T ss_dssp HHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCC
T ss_pred chHHHHHHhhcccccccccccccccchhhhhhcccccc-cccccccccccchhhhhhhhccccceEEEccCccccccccc
Confidence 78999999999999999999999999999999988888 99999999977777666655478999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 159 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~ 159 (324)
|+++|+++||++|++++||+++ .++.++|+++|+|+++.|++|+++|++..++|.++.++++.+.++.... ..|.
T Consensus 171 Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~----~~G~ 246 (398)
T d1qgna_ 171 DIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH----ILGG 246 (398)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH----HHCC
T ss_pred hHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcc----cCCC
Confidence 9999999999999999999999 7788999999999999999999999999998999999999999888776 7899
Q ss_pred CCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-CH
Q 020548 160 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE 236 (324)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~ 236 (324)
.+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++|+|.+++++.+ |.|++++|.++ +.
T Consensus 247 ~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~---g~g~~~sf~~~g~~ 323 (398)
T d1qgna_ 247 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDL 323 (398)
T ss_dssp CCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---CCCSEEEEEESSCH
T ss_pred cCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcC---CCCceeeeeecCCH
Confidence 9999999999999999999999999999999999999988 799999999999999999876 67889999998 67
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.|+.++ .++|+|+.++++++|....|..++++.+...|+++++||||+| .|+.++++++|++||+++
T Consensus 324 ~~a~~f~~~L~l~~----~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG-lEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 324 LTTAKFVDALKIPY----IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFDDLKADILQALDSI 398 (398)
T ss_dssp HHHHHHHHHCSSSE----ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcce----eeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec-cCCHHHHHHHHHHHHhcC
Confidence 78899999999643 5899999999999999999999999999999999999999999 999999999999999875
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-50 Score=349.01 Aligned_cols=304 Identities=30% Similarity=0.470 Sum_probs=282.6
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++..|.+....+....++ +|+.+.+++..|.+++++++ +++|++|++++|.||+..+.
T Consensus 75 MaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~g~~~~~~d~~d~~~~~~~~-~~~t~~v~~EspsNP~l~v~ 152 (384)
T d1cs1a_ 75 MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPLLRVV 152 (384)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSCTTTCCCC
T ss_pred HHHHHHHHhhcccccceecccccccchhhhhhhhhhcc-cccccccccCCCHHHHHhhc-cccccEEEEeccccccceec
Confidence 78999999999999999999999999999999888887 89999999999999999999 89999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++||++|+++|||+++ .++.+.|+++|+|+++.|++|+++|++..++|.++. ++++.+.+..... ..|
T Consensus 153 Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~----~~G 228 (384)
T d1cs1a_ 153 DIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN----NIG 228 (384)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH----HHT
T ss_pred cHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhh----hhh
Confidence 9999999999999999999999 788899999999999999999999999999998876 4566677776666 678
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-C
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-T 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ 235 (324)
..+.+..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++|.|.++.++.+ |.|++++|.++ +
T Consensus 229 ~~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~---g~gg~~sf~l~~~ 305 (384)
T d1cs1a_ 229 VTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFELDGD 305 (384)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEEESSC
T ss_pred hccccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcC---CCcceeEEeecch
Confidence 88999999999999999999999999999999999999987 899999999999999999876 67899999997 6
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.|+.++ +++|+|+.++++++|....|..+++..+...|+++++||+|+| .|+.++++++|+++|++
T Consensus 306 ~~~a~~f~~~L~l~~----~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG-lEd~eDLi~Dl~~AL~a 380 (384)
T d1cs1a_ 306 EQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFRA 380 (384)
T ss_dssp HHHHHHHHHTCSSSE----EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcce----eccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHHHHH
Confidence 677889999999744 5899999999999999999999999999999999999999999 99999999999999998
Q ss_pred hhh
Q 020548 316 MQD 318 (324)
Q Consensus 316 ~~~ 318 (324)
+.+
T Consensus 381 a~~ 383 (384)
T d1cs1a_ 381 ANK 383 (384)
T ss_dssp HTC
T ss_pred hcC
Confidence 753
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.4e-49 Score=347.24 Aligned_cols=302 Identities=30% Similarity=0.500 Sum_probs=280.1
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||. ++.+++++||+|++..+.|.++...++...++ +|+++.+++..+.+++++++ ++++++|++++|.||+..+.
T Consensus 74 MaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~-~gi~~~~~d~~~~~~~~~ai-~~~t~li~~EtpsNP~l~v~ 150 (380)
T d1ibja_ 74 MAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQIS 150 (380)
T ss_dssp HHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCTTTCCCC
T ss_pred HHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhcc-ccccccccCcchHHHHHHHh-ccCccEEEeccccccccccc
Confidence 67886 45678999999999999999999999998888 89999999999999999999 89999999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcC-hhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~ 158 (324)
|+++|+++|+++|+++|||+++ +++.+.|+++|+|+++.|++|+++|++..++|.++.+ +++.+.++.... ..|
T Consensus 151 Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~----~~G 226 (380)
T d1ibja_ 151 DIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN----SEG 226 (380)
T ss_dssp CHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH----HTT
T ss_pred cHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhcc----ccC
Confidence 9999999999999999999999 7788999999999999999999999999988998654 667788877766 789
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+.+..+++++++++++..|++++.+|+.++.++|++++. ++.+|+++++|.|.++.++.. ++|++++|.+.+.
T Consensus 227 ~~l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~---~~g~~~s~~~~~~ 303 (380)
T d1ibja_ 227 SGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSV 303 (380)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS---CCCSEEEEECSCH
T ss_pred CcCCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccc---cccccccccccHH
Confidence 99999999999999999999999999999999999999987 899999999999999988775 5788999999888
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.++ +++|+|+.++++++|....|..++++.+...|+.++.||+|+| .|+.++++++|++||+.+
T Consensus 304 ~~a~~f~d~l~l~~----~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG-lE~~eDLi~Dl~qAl~~l 378 (380)
T d1ibja_ 304 ALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFKTF 378 (380)
T ss_dssp HHHHHHHHHCSSSE----ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCcCe----EeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence 88999999999644 5999999999999999999999999999899999999999999 999999999999999876
Q ss_pred h
Q 020548 317 Q 317 (324)
Q Consensus 317 ~ 317 (324)
.
T Consensus 379 ~ 379 (380)
T d1ibja_ 379 P 379 (380)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=100.00 E-value=2.4e-49 Score=341.12 Aligned_cols=304 Identities=32% Similarity=0.571 Sum_probs=280.0
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++.+.|+++...++..+++ +|+++.+++..|.+.+++++ ++++++|++++|.||+..+.
T Consensus 23 MaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~-~gi~~~~~d~~d~~~~~~~i-~~~t~~i~~Es~~np~~~v~ 100 (331)
T d1pffa_ 23 MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVI 100 (331)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHTC-CTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHh-cCeEEEEecccchhhHhhhc-ccccceeeeecccccccccc
Confidence 68899999999999999999999999999999988887 99999999999999999999 89999999999999999999
Q ss_pred ChHHHHHHH-HhcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLA-HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~-~~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~ 158 (324)
|++.+++++ +++|+++|||+++ +++.++|+++|+|+++.|++|+++|.+..++|.++.+++.....+.... ....|
T Consensus 101 d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~--~~~~G 178 (331)
T d1pffa_ 101 DIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGI--KDITG 178 (331)
T ss_dssp CHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCC--CCCCC
T ss_pred cchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhh--hhccC
Confidence 999999885 6789999999999 5677999999999999999999999999999999998877666554321 11568
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCH
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 236 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 236 (324)
..+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++|+|.+++++.. +.|++++|.+++.
T Consensus 179 ~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~g~l~sf~l~~~ 255 (331)
T d1pffa_ 179 AIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMK---MFGSMIAFDVDGL 255 (331)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCS---SCCSEEEEECSSH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhccc---ccCcccceeeccH
Confidence 99999999999999999999999999999999999999987 899999999999999999876 6899999999988
Q ss_pred HHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 237 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 237 ~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
+.+.+|++.++.++ .++|+|+.++++++|....|..++++++...|++++.||+|+| .|+.++++++|+++|+++
T Consensus 256 ~~~~~f~d~l~lf~----~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvG-lE~~~DLi~Dl~~AL~~i 330 (331)
T d1pffa_ 256 EKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVG-CENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHTCSSSE----ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCcce----ecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEee-eCCHHHHHHHHHHHHHHh
Confidence 89999999999633 5889999999999999999999999999999999999999999 999999999999999875
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=7.2e-48 Score=338.39 Aligned_cols=305 Identities=33% Similarity=0.608 Sum_probs=279.8
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|++++..|+++...++...++ +|+++.+++..|.+++++++ ++++++|++++|.||+..+.
T Consensus 84 maAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~gi~~~~~d~~d~~~~~~~i-~~~t~lv~~Etp~NP~l~v~ 161 (394)
T d1e5ea_ 84 MGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETPANPTLKII 161 (394)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESSCTTTCCCC
T ss_pred hHHHHHHHHhhcccccccccccceeehhhHhHHHHhhc-cceeeeccCCCCHHHHHHhh-cccccEEEEeccCCcceeee
Confidence 68999999999999999999999999999999888887 89999999999999999999 99999999999999999999
Q ss_pred ChHHHHHHHH-hcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccC
Q 020548 81 NIPELSRLAH-DKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 158 (324)
Q Consensus 81 ~~~~i~~l~~-~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~ 158 (324)
|++++.+.++ ++|+++++|+++ .++.++|+++|+|+++.|++|+++|++..++|.++++.+.....+.... -...|
T Consensus 162 Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~--~~~~G 239 (394)
T d1e5ea_ 162 DMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI--KDITG 239 (394)
T ss_dssp CHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC--CCCCC
T ss_pred hhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHH--HHhhC
Confidence 9999988665 578999999999 7788999999999999999999999999999999999888776654321 12578
Q ss_pred CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC-
Q 020548 159 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET- 235 (324)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~- 235 (324)
..+++..+++++++++++..|++++.+|+..+.++|++++. ++.+|+++++++|.++.++.+ +.|++++|.+.+
T Consensus 240 ~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~G~~~sf~~~~~ 316 (394)
T d1e5ea_ 240 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMITFILKSG 316 (394)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCCSEEEEEETTH
T ss_pred CCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccc---cCCCeeeeeccCC
Confidence 99999999999999999999999999999999999999998 899999999999999999876 578899999885
Q ss_pred HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 020548 236 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 315 (324)
Q Consensus 236 ~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~ 315 (324)
.+.+.+|++.++.++ +++|+|+.++++++|....|..+++..+...|++++.||+|+| .|+.++++++|+++|++
T Consensus 317 ~~~a~~f~~~l~l~~----~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG-lEd~eDLi~Dl~qAl~~ 391 (394)
T d1e5ea_ 317 FEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIADFKQGLDA 391 (394)
T ss_dssp HHHHHHHHHTCSSSE----ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccc----eeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEec-cCCHHHHHHHHHHHHHH
Confidence 456889999999744 5899999999999999999999999999999999999999999 99999999999999998
Q ss_pred hh
Q 020548 316 MQ 317 (324)
Q Consensus 316 ~~ 317 (324)
+.
T Consensus 392 l~ 393 (394)
T d1e5ea_ 392 LL 393 (394)
T ss_dssp HH
T ss_pred hh
Confidence 75
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.5e-48 Score=339.39 Aligned_cols=304 Identities=30% Similarity=0.475 Sum_probs=268.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCC-HHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD-HEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d-~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
|+||..++.+++++||+|+++...|+++...++...++ +|+++.+++..+ .+..++.+ +++|++|++++|.||+..+
T Consensus 83 maAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~-~gi~~~~~d~~~~~~~~~~~~-~~~t~li~~EtpsNP~l~v 160 (421)
T d2ctza1 83 HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNI 160 (421)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhh-ccccceecccccCcchhcccc-CCCceEEEEcCCCcceeEe
Confidence 68899999999999999999999999999999988887 899999998765 45556666 8899999999999999999
Q ss_pred cChHHHHHHHHhcCCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhH---------------
Q 020548 80 ANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--------------- 142 (324)
Q Consensus 80 ~~~~~i~~l~~~~~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~--------------- 142 (324)
.|+++|+++||++|++++||++++ ++.+.|+++|+|+++.|++|+++|++..++|.++.+.+.
T Consensus 161 ~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~ 240 (421)
T d2ctza1 161 PDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQP 240 (421)
T ss_dssp CCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBG
T ss_pred cchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCch
Confidence 999999999999999999999984 577899999999999999999999999999999865421
Q ss_pred -------HHH------HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCC
Q 020548 143 -------VNS------MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLE 207 (324)
Q Consensus 143 -------~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~ 207 (324)
.+. +.+......+..|..+++..+++++++++++..|++++.+++..+.++|++++. ++.+|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~ 320 (421)
T d2ctza1 241 GYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLP 320 (421)
T ss_dssp GGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTST
T ss_pred hhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcC
Confidence 111 111111122356999999999999999999999999999999999999999997 89999999
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 286 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
++|+|.++.++.++ +.|++++|.++ +.+.+.+|++.|+.++ +++|+|+.++++++|....|..+++.++...|
T Consensus 321 s~p~~~~a~~~~~g--~~G~~~sf~l~~~~~~a~~f~~~L~l~~----~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~G 394 (421)
T d2ctza1 321 HHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLIS----HLANVGDTRTLAIHPASTTHSQLSPEEQAQAG 394 (421)
T ss_dssp TCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSSE----ECSCCCCSSCEEECGGGTTTTTSCHHHHHHHT
T ss_pred CCccHHHHHHhcCC--CCceEEEEEecCCHHHHHHHHHcCCcCe----eccccccccceeeCcccccchhCCHHHHHhcC
Confidence 99999999999863 35889999998 5566889999999744 58899999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHH
Q 020548 287 ISAGLVRMSVGYLGTLDQRWSQFEKAL 313 (324)
Q Consensus 287 ~~~~~iR~s~g~~~~~~~~~~~l~~~l 313 (324)
++++.||+|+| .|+.++++++|+++|
T Consensus 395 I~~~liRlSvG-lEd~eDLi~DL~qAL 420 (421)
T d2ctza1 395 VSPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp CCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred CCcCeEEEEec-cCCHHHHHHHHHHhc
Confidence 99999999999 999999999999987
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-47 Score=334.26 Aligned_cols=300 Identities=21% Similarity=0.399 Sum_probs=272.9
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+||..++.+++++||+|+++...|.++...++..+++ +|+++.+++..|.+++++++ ++++++|++++|.||+..+.
T Consensus 83 MaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~-~Gi~~~~~d~~d~~~~~~~i-~~~t~~i~~EtpsNP~l~v~ 160 (391)
T d1cl1a_ 83 AAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPGSITMEVH 160 (391)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGTC-CTTEEEEEEESSCTTTCCCC
T ss_pred cceeeehhhcccCCCCeEEEecccccchhhhhhhcccc-cccccccccCcccccccccc-ccccceeeecccCccccccc
Confidence 78999999999999999999999999999999988888 89999999999999999999 88999999999999999999
Q ss_pred ChHHHHHHHHhc--CCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhcc
Q 020548 81 NIPELSRLAHDK--GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 157 (324)
Q Consensus 81 ~~~~i~~l~~~~--~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~ 157 (324)
|+++++++|+++ |++++||+++ .++.++|+++|+|+++.|++|+++|++..++|.++.++++.+.+..... ..
T Consensus 161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~----~~ 236 (391)
T d1cl1a_ 161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY----LM 236 (391)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH----HT
T ss_pred ccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhhh----cc
Confidence 999999999774 9999999999 7788999999999999999999999999999999999998888877766 67
Q ss_pred CCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeC-
Q 020548 158 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 234 (324)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~- 234 (324)
|..+.+..+++++++++++..|++++.+++..+.++|++++. ++.+|+++++++|.++.++.+ |.|++++|.+.
T Consensus 237 G~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf~l~~ 313 (391)
T d1cl1a_ 237 GQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFSFVLKK 313 (391)
T ss_dssp TCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEEEEESS
T ss_pred cccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccC---CCCcceeeeecC
Confidence 899999999999999999999999999999999999999988 899999999999999999886 57788899887
Q ss_pred --CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHH
Q 020548 235 --TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 312 (324)
Q Consensus 235 --~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~ 312 (324)
+.+...+|++.++.++ +++|+|+.++++++|....|....+. ...|+++++||+|+| .|+.++++++|++|
T Consensus 314 ~~~~e~~~~f~d~L~l~~----~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVG-lEd~eDLi~Dl~~A 386 (391)
T d1cl1a_ 314 KLNNEELANYLDNFSLFS----MAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIG-LEDVDDLIADLDAG 386 (391)
T ss_dssp CCCHHHHHHHHTTCSSCB----CCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECC-SSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcce----EeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEec-cCCHHHHHHHHHHH
Confidence 5567889999998744 58899999999999887665544332 346888999999999 99999999999999
Q ss_pred HHhh
Q 020548 313 LSRM 316 (324)
Q Consensus 313 l~~~ 316 (324)
|+++
T Consensus 387 L~~i 390 (391)
T d1cl1a_ 387 FARI 390 (391)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9886
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-46 Score=328.69 Aligned_cols=303 Identities=28% Similarity=0.459 Sum_probs=273.7
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCccccc
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 80 (324)
|+|+..+ ..++++||+|+++...|++....++..+++ +|+++.+++ .+.+++++++ ++++++|++++|.||+..+.
T Consensus 80 maAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~-~gi~~~~~~-~~~~~~~~~i-~~~t~lv~~EspsNP~l~v~ 155 (393)
T d1n8pa_ 80 SATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTN-DLLNDLPQLI-KENTKLVWIETPTNPTLKVT 155 (393)
T ss_dssp HHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEES-SHHHHHHHHS-CSSEEEEEECSSCTTTCCCC
T ss_pred hhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhc-ccceeEEee-cchHHHHHHh-hhhcceeEecCcchhhhhcc
Confidence 6778655 466889999999999999999999999998 999999987 4568899999 89999999999999999999
Q ss_pred ChHHHHHHHH----hcCCEEEEcCCC-CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhhhhhh
Q 020548 81 NIPELSRLAH----DKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGAL 154 (324)
Q Consensus 81 ~~~~i~~l~~----~~~~~~ivD~~~-~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~~~~~ 154 (324)
|+++|+++|+ ++|+++|||+++ .++.++|+++|+|+++.|++|+++|++..++|.++ .++++.+.++....
T Consensus 156 Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~--- 232 (393)
T d1n8pa_ 156 DIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN--- 232 (393)
T ss_dssp CHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH---
T ss_pred chhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHh---
Confidence 9999999999 678999999999 67889999999999999999999999999999986 45667888887776
Q ss_pred hccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC-CC--ceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 155 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~--~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
..|..+++..+++++++++++..|++++.+++..+.++|+++ +. ++.+|.+++++.|.++.++.+.. ++|++++|
T Consensus 233 -~~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~-~~G~~~sf 310 (393)
T d1n8pa_ 233 -AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDA-LGGGMISF 310 (393)
T ss_dssp -HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGG-CCCSEEEE
T ss_pred -hcCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccC-CCCceEEE
Confidence 789999999999999999999999999999999999999876 53 88999999999999998887532 45889999
Q ss_pred EeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHH
Q 020548 232 DME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 310 (324)
Q Consensus 232 ~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~ 310 (324)
+++ +.+.+.+|++.++.++ ++.|+|+.++++++|....|..+++..+...|+++++||+|+| .|+.++++++|+
T Consensus 311 ~l~~~~~~~~~f~~~l~l~~----~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvG-lE~~~DLi~Dl~ 385 (393)
T d1n8pa_ 311 RIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IEDTDDLLEDIK 385 (393)
T ss_dssp EESSCHHHHHHHHHHCSSSE----ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SSCHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhCCcce----ecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEec-cCCHHHHHHHHH
Confidence 997 6677899999999744 5899999999999999999999999999899999999999999 999999999999
Q ss_pred HHHHhhh
Q 020548 311 KALSRMQ 317 (324)
Q Consensus 311 ~~l~~~~ 317 (324)
+||++.+
T Consensus 386 ~AL~~a~ 392 (393)
T d1n8pa_ 386 QALKQAT 392 (393)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.98 E-value=1.9e-31 Score=237.00 Aligned_cols=261 Identities=17% Similarity=0.224 Sum_probs=184.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..+++++++|||+|++++|+|+.+...++ ..|.++..++. .|++++++++ +++++++++++|||
T Consensus 101 ~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~~~~~v~~~~~~~~~~~~d~~~l~~~~-~~~~~~~~~~~P~N 174 (388)
T d1j32a_ 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVILPTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSN 174 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECCCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----HhcCeEEEEecccccccCCCHHHHHHhC-CCCCeEEEECCCCC
Confidence 68889999999999999999999999998874 24556556554 2899999999 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCccC------C-----CCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR------L-----GADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~------~-----~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+.+ +++|+++|+++|+++|+||+|..+.++... . +..+++.|+||.|+.+|+|+ ||+++++
T Consensus 175 PTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRv-G~~~~~~ 253 (388)
T d1j32a_ 175 PTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRV-GFLAGPV 253 (388)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCC-EEEECCH
T ss_pred CCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHe-EEEEECH
Confidence 9999975 668888899999999999999666543211 1 35799999999999999997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~~~~~ 218 (324)
++++.+...... .....+...+.++...+. ...++...++.++++++.+.+.|++.+ ..+..|.
T Consensus 254 ~~~~~~~~~~~~-~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~------------- 319 (388)
T d1j32a_ 254 PLVKAATKIQGH-STSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD------------- 319 (388)
T ss_dssp HHHHHHHHHHHT-TTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC-------------
T ss_pred HHHHHHHHhhhh-ccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCC-------------
Confidence 999888776541 112222233333333333 334466777778999999999999874 4555454
Q ss_pred hccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 219 ANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
+|.++|++++. ..+..++.+.+.. +.|+ .+.|+..+ + .++++|+|++
T Consensus 320 ------gg~~l~~~l~~~~~~~~~~~~~ll~--~~gV-----------~v~pG~~F------------~-~~~~~Rls~~ 367 (388)
T d1j32a_ 320 ------GAFYMFPSIAKTGRSSLDFCSELLD--QHQV-----------ATVPGAAF------------G-ADDCIRLSYA 367 (388)
T ss_dssp ------BTTEECCBCGGGTCCHHHHHHHHHH--HHCE-----------ECEEGGGG------------T-CTTBEEEECC
T ss_pred ------ceEEEEEECCCCCCCHHHHHHHHHH--hCCE-----------EEEecccc------------C-CCCeEEEEEe
Confidence 67788888862 2234445555431 1232 22343332 2 2479999999
Q ss_pred cCCC--HHHHHHHHHHHHHhh
Q 020548 298 YLGT--LDQRWSQFEKALSRM 316 (324)
Q Consensus 298 ~~~~--~~~~~~~l~~~l~~~ 316 (324)
... .++.+++|+++|+.+
T Consensus 368 -~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 368 -TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 532 223455555555543
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=4.1e-31 Score=234.53 Aligned_cols=257 Identities=22% Similarity=0.277 Sum_probs=185.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+.+...++ ..|.++..++.. |++++++++ +++++++++++|||
T Consensus 102 ~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~P~N 175 (382)
T d1b5pa_ 102 QALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVEVETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNN 175 (382)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTTCCCHHHHHTTC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHhCCCCCEEEECCCCcHHHHHHHH-----HhcCeEEEEecccccccCCCHHHHHHhC-CCCCeEEEECCCCC
Confidence 58889999999999999999999999998884 367777776542 899999998 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-----cC--CCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-----~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
|||.+.+ +++|+++|+++|++||+||+|..+.++. .. .+..+++.|+||.|+.+|+|+ ||+++++++++
T Consensus 176 PTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~-G~~~~~~~~i~ 254 (382)
T d1b5pa_ 176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRI-GYACGPKEVIK 254 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCC-EEEECCHHHHH
T ss_pred CcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhhe-EEEEECHHHHH
Confidence 9999975 6788999999999999999997765422 11 156799999999999999997 99999999998
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
.+..... ......+.+.+..+...+..... +....+.+.++++.+.+.+.+.+..+..|.
T Consensus 255 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~--------------- 318 (382)
T d1b5pa_ 255 AMASVSR-QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS--------------- 318 (382)
T ss_dssp HHHHHHH-TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS---------------
T ss_pred HHHHHHH-hcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCC---------------
Confidence 8877655 11122222333333333322221 234445567788888999988887766565
Q ss_pred cCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 221 KEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
+|.++|+++.+ ..+...+.+.+.. .|+ .+.|+..+ + .++++|++++ .
T Consensus 319 ----gg~~~~~~~~~~~~~~~~~~~~l~e---~gV-----------~v~PG~~F------------~-~~~~iRis~~-~ 366 (382)
T d1b5pa_ 319 ----GAFYVLMDTSPIAPDEVRAAERLLE---AGV-----------AVVPGTDF------------A-AFGHVRLSYA-T 366 (382)
T ss_dssp ----BTTEEEEECTTTCSSHHHHHHHHHH---TTE-----------ECEESGGG------------T-CTTEEEEECC-S
T ss_pred ----ceEEEeEeCCCCCCCHHHHHHHHHH---CCE-----------EEEeCccc------------C-CCCeEEEEEc-C
Confidence 68889999852 2234555555553 232 22344332 2 2479999999 5
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 020548 300 GTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~~ 318 (324)
. + +.|+++++++.+
T Consensus 367 ~--~---e~l~~al~rl~~ 380 (382)
T d1b5pa_ 367 S--E---ENLRKALERFAR 380 (382)
T ss_dssp C--H---HHHHHHHHHGGG
T ss_pred C--H---HHHHHHHHHHHH
Confidence 3 2 346666766654
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.98 E-value=2.2e-31 Score=236.86 Aligned_cols=219 Identities=15% Similarity=0.172 Sum_probs=165.4
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
++|+..+++++++|||+|++++|+|+.+...++ ..|.++..++.. |++++++.+ +++++++++++||
T Consensus 96 ~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~P~ 169 (388)
T d1gdea_ 96 NQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPVEVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPC 169 (388)
T ss_dssp THHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEEEEECCGGGTTCCCHHHHHHHC-CTTEEEEEEESSC
T ss_pred chHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEeecccccCCCCCHHHHHHhC-ccCCeEEEECCCc
Confidence 367888889999999999999999999988884 367777777642 899999999 8899999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cC----CCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~----~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
||||.+.+ +++|+++|++++++||+||+|..+.... .. .+..++++|+||.|+.+|+|+ ||+++++
T Consensus 170 NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~ii~~~ 248 (388)
T d1gdea_ 170 NPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAPS 248 (388)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECCH
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccE-EEEEeec
Confidence 99999975 6788899999999999999997664321 11 146799999999999899997 9999999
Q ss_pred hHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHH
Q 020548 141 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~ 217 (324)
++.+.+..... ......+.+.+..+..++.... .+....+++.+++..+.+.|.+.+..+..|.
T Consensus 249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~------------ 315 (388)
T d1gdea_ 249 WIIERMVKFQM-YNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK------------ 315 (388)
T ss_dssp HHHHHHHHHHH-TTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC------------
T ss_pred cchhhhhhccc-cccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCC------------
Confidence 99988887665 1112222233333433443322 2344556678888899999998877655554
Q ss_pred HhccCCCcceEEEEEeCC-HHHHHHHHHHh
Q 020548 218 MANKEYGFGGLLCLDMET-EEKANRLMNYL 246 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l 246 (324)
+|.++|+++++ ..+..+|.+.+
T Consensus 316 -------gg~fl~~~l~~~~~~~~~~~~~l 338 (388)
T d1gdea_ 316 -------GAFYIFPRIRDTGLTSKKFSELM 338 (388)
T ss_dssp -------BTTEECCBCGGGTCCHHHHHHHH
T ss_pred -------ceEEEEEECCCCCCCHHHHHHHH
Confidence 67889998863 23455666654
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.96 E-value=1.9e-28 Score=219.67 Aligned_cols=206 Identities=17% Similarity=0.208 Sum_probs=159.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhcCCceE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGRTKV 66 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~~~~~~ 66 (324)
+|+..+++++++|||.|++++|+|+.+...+. ..|.+++.++. .+.+++.+.. ..++++
T Consensus 101 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 174 (418)
T d2r5ea1 101 EALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-NEKTKM 174 (418)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHC-CTTEEE
T ss_pred hhhhhhhhhccccccceeccccccchhhHHHH-----HcCCeEEEEEecccccccchhhhhhhhhHHHHhhhh-hccccc
Confidence 58899999999999999999999999998884 25666655543 2678888877 789999
Q ss_pred EEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------C----CCCcEEEeCCccccccCCCeeE
Q 020548 67 LYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R----LGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 67 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------~----~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+++++||||||.+.+ +++|+++|+++|+++|+||+|..+.+++. . .+..+++.|+||.++++|+|+
T Consensus 175 ~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRi- 253 (418)
T d2r5ea1 175 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI- 253 (418)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC-
T ss_pred eecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccc-
Confidence 999999999999975 56788899999999999999966643321 1 145699999999999999998
Q ss_pred EEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc-------Cc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCC
Q 020548 134 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-------RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 205 (324)
Q Consensus 134 G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~ 205 (324)
||+++++++++.+..... ......+++.+..+...+. .. .++....+.+..+++.+.+.|++.+..+..|.
T Consensus 254 G~~~~~~~~i~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~ 332 (418)
T d2r5ea1 254 GWAYGPEALLKNLQMVHQ-NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ 332 (418)
T ss_dssp EEEESCHHHHHHHHHHHT-TTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEEEECS
T ss_pred ccccccchhhhhhhhccc-ccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcccCCC
Confidence 999999999998887665 1122333344433333221 11 23556667778999999999999988777676
Q ss_pred CCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 206 LEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|+++.
T Consensus 333 -------------------gg~f~~~~~~ 342 (418)
T d2r5ea1 333 -------------------GGYFMVADWS 342 (418)
T ss_dssp -------------------BSSEEEEECG
T ss_pred -------------------ceeEEEEEcc
Confidence 7888998874
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=4.2e-28 Score=215.81 Aligned_cols=207 Identities=16% Similarity=0.147 Sum_probs=154.1
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-------CCHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+++..++.+++.+||+|++++|+|+.+...++ ..|.+++.++. .|++++++.+ .++++++++++|||
T Consensus 104 ~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~-----~~g~~~v~v~~~~~~~~~~d~~~~~~~~-~~~~~~v~l~~P~N 177 (395)
T d1xi9a_ 104 EALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEYRTIEEEDWQPDIDDIRKKI-TDRTKAIAVINPNN 177 (395)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEEEGGGTSEECHHHHHHHC-CTTEEEEEEESSCT
T ss_pred hhhhhhhhhhcCCCCEEEEcCCccccchhhhh-----hcCCEEEEEeccccccccchHHHHHHhh-cccccEEEecCCCC
Confidence 57888889999999999999999999998884 36766666643 2899999998 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc--------CCCCcEEEeCCccccccCCCeeEEEEEc--Chh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA--------RLGADVVVHSISKFISGGADIIAGAVCG--PAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~--------~~~~d~~~~S~sK~~~~~g~r~~G~i~~--~~~ 141 (324)
|||.+.+ +++|+++|+++++++|.|++|..+.++.. .....+++.|+||.|+++|+|+ ||++. +..
T Consensus 178 PTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRv-G~~~~~~~~~ 256 (395)
T d1xi9a_ 178 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL-GYMYFVDPEN 256 (395)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC-EEEEEECTTC
T ss_pred CccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhc-EeeEecCHHH
Confidence 9999975 67888999999999999999966543321 1246799999999999999997 98753 333
Q ss_pred HHHHHHHhhhh--hhhccCCCCCHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHH
Q 020548 142 LVNSMMDLHQG--ALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 142 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~ 217 (324)
....+...... ....+.+.+.+.++...+.. ..++....+.+.++++.+.+.|++.+. .+..|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~------------ 324 (395)
T d1xi9a_ 257 KLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ------------ 324 (395)
T ss_dssp TTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC------------
T ss_pred HHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCC------------
Confidence 33333332211 11133444555554444433 345667777789999999999999875 444444
Q ss_pred HhccCCCcceEEEEEeC
Q 020548 218 MANKEYGFGGLLCLDME 234 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|++++
T Consensus 325 -------gg~~~~~~l~ 334 (395)
T d1xi9a_ 325 -------GAFYIFPKIE 334 (395)
T ss_dssp -------BSSEECCEEC
T ss_pred -------eeEEEeEECC
Confidence 6888998886
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1.5e-27 Score=211.01 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=156.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++++++++||+|++++|+|+.+...... .+.....++.. +.+.++... .++++++++++|||
T Consensus 99 ~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~nP~N 172 (375)
T d1o4sa_ 99 QALFNAFMALLDPGDEVIVFSPVWVSYIPQIIL-----AGGTVNVVETFMSKNFQPSLEEVEGLL-VGKTKAVLINSPNN 172 (375)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECCGGGTTCCCHHHHHHTC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHHHhCCCCEEEEccCccccchhhhhc-----cccccccccccccccccchhHHHHHhh-ccCccEEEEeCCCC
Confidence 588899999999999999999999999887742 44455444432 778888777 78999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---------cCCCCcEEEeCCccccccCCCeeEEEEEcChhH
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---------ARLGADVVVHSISKFISGGADIIAGAVCGPANL 142 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~ 142 (324)
|||.+.+ +++|+++|++|+++||+||+|..+.... ...+..++++|+||.|+.+|+|+ ||++++++.
T Consensus 173 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~-G~~~~~~~~ 251 (375)
T d1o4sa_ 173 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV-GYLISSEKV 251 (375)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC-EEEECCHHH
T ss_pred CccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccc-ccccccccc
Confidence 9999975 6788889999999999999986654321 12367899999999999999997 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhcc
Q 020548 143 VNSMMDLHQGALMLLGPTMNPKVAFEL-SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.+.+..... .............. ...........+.+.++++.+.+.|++.+..+..|.
T Consensus 252 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~---------------- 311 (375)
T d1o4sa_ 252 ATAVSKIQS----HTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPE---------------- 311 (375)
T ss_dssp HHHHHHHHH----HHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS----------------
T ss_pred hhhhhhhhc----cccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhcCceEecCC----------------
Confidence 888877665 22333332222222 222233445566678889999999999988766555
Q ss_pred CCCcceEEEEEeCC
Q 020548 222 EYGFGGLLCLDMET 235 (324)
Q Consensus 222 ~~~~g~~~~~~l~~ 235 (324)
+|.++|++++.
T Consensus 312 ---gg~f~~~~~~~ 322 (375)
T d1o4sa_ 312 ---GAFYLFFKVRG 322 (375)
T ss_dssp ---BSSEEEEECSS
T ss_pred ---ccEEEEEECCC
Confidence 68889999974
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.96 E-value=4.5e-28 Score=215.63 Aligned_cols=262 Identities=11% Similarity=0.092 Sum_probs=173.5
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+||..+++++++|||+|++++|.|.++..... ..|...+.++. .|.+.++....+++++++++++||
T Consensus 100 ~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~-----~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~ 174 (394)
T d1c7na_ 100 PAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (394)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred hhhhhhhccccccccccccccCcccchhhHHh-----hhhhcccccccccccccccchhhhhhhhhccccceEEEecccc
Confidence 58889999999999999999999999988874 25555555443 277888877756789999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------C-----CCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R-----LGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+.+ +++|+++|++++++||+||+|..+.++.. . ....+++.|+||.|+++|+|+ ||++.+
T Consensus 175 NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~-g~~~~~ 253 (394)
T d1c7na_ 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGM-SNIIIK 253 (394)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECC
T ss_pred cccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccccc-cccccc
Confidence 99999975 66788899999999999999977653211 1 146799999999999999998 777655
Q ss_pred -hhHHHHHHHhhhhhhhccCCCCCH-HHHHH-H-hcCc-ccHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchh
Q 020548 140 -ANLVNSMMDLHQGALMLLGPTMNP-KVAFE-L-SERI-PHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHH 212 (324)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~ 212 (324)
+.+.+.+...... ..+..... ..++. . .... .......+.+.++++.+.+.++..+. .+..|.
T Consensus 254 ~~~i~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~------- 323 (394)
T d1c7na_ 254 NPDIRERFTKSRDA---TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE------- 323 (394)
T ss_dssp CHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS-------
T ss_pred Chhhhhhhhhhhhh---ccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCC-------
Confidence 5566666665541 22222222 22222 1 1112 23445555567777878888876543 333333
Q ss_pred HHHHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCe
Q 020548 213 ELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 291 (324)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
+|.++|++++. ..+...|.+.|.. +.|+ .+.|+..+.. ..+++
T Consensus 324 ------------g~~~~~~~~~~~~~~~~~~~~~Ll~--~~gV-----------~v~pG~~Fg~-----------~~~~~ 367 (394)
T d1c7na_ 324 ------------GTYLQWIDFRALKMDHKAMEEFMIH--KAQI-----------FFDEGYIFGD-----------GGIGF 367 (394)
T ss_dssp ------------BSSEEEEECGGGCCCHHHHHHHHHH--TTCC-----------CCEEGGGGCG-----------GGTTE
T ss_pred ------------ceeEEEEECCCCCCCHHHHHHHHHH--hCCE-----------EEEcchhhCC-----------CCCCE
Confidence 67788998863 2345556665532 1232 2234333210 12579
Q ss_pred EEEEeccCCC--HHHHHHHHHHHHHhh
Q 020548 292 VRMSVGYLGT--LDQRWSQFEKALSRM 316 (324)
Q Consensus 292 iR~s~g~~~~--~~~~~~~l~~~l~~~ 316 (324)
+|+|++ ..+ .++.+++|.++|+.+
T Consensus 368 iRis~~-~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 368 ERINLA-APSSVIQESLERLNKALKDL 393 (394)
T ss_dssp EEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEe-CCHHHHHHHHHHHHHHHHhc
Confidence 999999 532 234455666666654
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.96 E-value=8.8e-27 Score=209.35 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=170.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhh-----hcCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAI-----VQGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l-----~~~~~~~v~~ 69 (324)
+||..++.++++|||+|++++|+|+.+...+. ...|+++++++.+ |+++++.++ ...+++++++
T Consensus 119 ~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~----~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l 194 (428)
T d1iaya_ 119 GANETIIFCLADPGDAFLVPSPYYPAFNRDLR----WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT----TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEccCCchHHHHHHH----HhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEE
Confidence 57889999999999999999999999987663 2247888887653 667665543 1467899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------------CCCCcEEEeCCccccccCC
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------------RLGADVVVHSISKFISGGA 129 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------------~~~~d~~~~S~sK~~~~~g 129 (324)
++||||||.+.+ +++|+++|+++|++||+||+|..+.++.. ..+..+++.|+||.|+++|
T Consensus 195 ~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 274 (428)
T d1iaya_ 195 TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred ccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCC
Confidence 999999999975 67899999999999999999976543211 1145689999999999999
Q ss_pred CeeEEEEEcC-hhHHHHHHHhhhhhhhccC-CCCCHHHHHHHhcCccc----HHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 130 DIIAGAVCGP-ANLVNSMMDLHQGALMLLG-PTMNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 130 ~r~~G~i~~~-~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+|+ ||++++ +.+.+.+..... ... +.+.+..+...+..... +.+..+++.++++.+.+.|+..|.++..
T Consensus 275 lRi-G~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~ 349 (428)
T d1iaya_ 275 FRV-GIIYSFNDDVVNCARKMSS----FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLK 349 (428)
T ss_dssp GCE-EEEEESCHHHHHHHHHHHT----TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred ccc-ccccccccchhhhhhhhhc----ccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEec
Confidence 997 999875 556666655544 222 33333333333332222 3345555688889999999988877665
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeCC------HHHHHHHHHHhhccccccccccccCCccceeccccccccCCC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 277 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 277 (324)
|. +|.++|++++. .....++.+.+-. +.| +.+.|+..++
T Consensus 350 p~-------------------gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~--~~g-----------V~v~PG~~F~--- 394 (428)
T d1iaya_ 350 NN-------------------AGLFCWMDLRPLLRESTFDSEMSLWRVIIN--DVK-----------LNVSPGSSFE--- 394 (428)
T ss_dssp CS-------------------SSSEEEEECGGGCSSSSHHHHHHHHHHHHH--TSC-----------EECEEGGGGT---
T ss_pred CC-------------------cceEEEEECccccccCCCCCHHHHHHHHHH--hCC-----------EEEEcchhcC---
Confidence 54 68899999862 2334455555432 122 2334443331
Q ss_pred CHHHHHhcCCCCCeEEEEeccCCC
Q 020548 278 NAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 278 ~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
...++++|+|++ ..+
T Consensus 395 --------~~~~g~~Ris~a-~~~ 409 (428)
T d1iaya_ 395 --------CQEPGWFRVCFA-NMD 409 (428)
T ss_dssp --------CSSSSEEEEECS-SSC
T ss_pred --------CCCCCEEEEEeC-CCC
Confidence 113589999998 544
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.96 E-value=3.3e-27 Score=212.32 Aligned_cols=262 Identities=17% Similarity=0.158 Sum_probs=178.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh-----cCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV-----QGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~-----~~~~~~v~~ 69 (324)
+||..+++++++|||+|++++|+|+.+...+.. ..|++++.++.+ |++++++++. ..+++++++
T Consensus 120 ~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~----~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 195 (431)
T d1m7ya_ 120 SANETFIFCLADPGEAVLIPTPYYPGFDRDLKW----RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 195 (431)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTT----TTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH----hcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEe
Confidence 588999999999999999999999998877631 146777777543 6777776662 247899999
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCccC-------------------CCCcEEEeCCcccccc
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-------------------LGADVVVHSISKFISG 127 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~-------------------~~~d~~~~S~sK~~~~ 127 (324)
++||||||.+.+ +++|+++|+++|+++|+||+|+.+.++... .+..+++.|+||.|++
T Consensus 196 ~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 275 (431)
T d1m7ya_ 196 TNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 275 (431)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCC
T ss_pred cCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccC
Confidence 999999999975 778899999999999999999665432110 1346999999999999
Q ss_pred CCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc----cHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 128 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 128 ~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+|.|+ ||++++++++......... ....++..+..+...+.... .+.+..+++.++++.+.+.|++.+..+..
T Consensus 276 ~G~Ri-G~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~ 352 (431)
T d1m7ya_ 276 PGFRV-GAIYSNDDMVVAAATKMSS--FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLN 352 (431)
T ss_dssp GGGCE-EEEEESCHHHHHHHHHHGG--GSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECC
T ss_pred CCCcc-ceeccchhhhHHHHHHHhc--cccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEec
Confidence 99997 9999988876555443331 12223333333333333322 24455566788899999999998887765
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeCC------HHHHHHHHHHhhccccccccccccCCccceeccccccccCCC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 277 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 277 (324)
|. +|.++|++++. .+...++++++-. +.|+ .+.|+..++
T Consensus 353 p~-------------------gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~--~~gV-----------~v~PG~~F~--- 397 (431)
T d1m7ya_ 353 GN-------------------AGLFCWVDMRHLLRSNTFEAEMELWKKIVY--EVHL-----------NISPGSSCH--- 397 (431)
T ss_dssp CC-------------------SSSEEEEECGGGSSSSSHHHHHHHHHHHHH--TSCE-----------ECEEGGGGT---
T ss_pred CC-------------------ceeEEEEECccccccCcccCHHHHHHHHHH--HCCE-----------EEEeccccC---
Confidence 54 68899999862 3344556555432 1232 334444332
Q ss_pred CHHHHHhcCCCCCeEEEEeccCCCHH---HHHHHHHHHHH
Q 020548 278 NAEEKALAGISAGLVRMSVGYLGTLD---QRWSQFEKALS 314 (324)
Q Consensus 278 ~~~~~~~~~~~~~~iR~s~g~~~~~~---~~~~~l~~~l~ 314 (324)
...++++|+|++ ..+.+ +.+++|.++++
T Consensus 398 --------~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 398 --------CTEPGWFRVCFA-NLPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp --------CSSTTEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred --------CCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH
Confidence 113589999998 54332 23444444443
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=2.4e-27 Score=210.68 Aligned_cols=269 Identities=19% Similarity=0.247 Sum_probs=178.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+++..++.+++++||.|++++|+|+.+...+. ..|..+..++.+ +.+.+.... .++++++++++||||
T Consensus 98 ~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~nP~NP 171 (389)
T d2gb3a1 98 EAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLIPVTRRMEEGFAIPQNLESFI-NERTKGIVLSNPCNP 171 (389)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEEEEECCGGGTSCCCTTGGGGC-CTTEEEEEEESSCTT
T ss_pred ccccccccccccCCCeEEEeCCCCcccccccc-----ccCccccccccccccccchhhhhhhhc-ccCccEEEeCCCCcc
Confidence 57888999999999999999999999998884 256666665543 334455555 678999999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHH-H
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLV-N 144 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~-~ 144 (324)
||.+.+ +++|+++|+++++++|+||+|..+..+.. ..+..+++.|+||.++++|+|+ ||++++++.+ +
T Consensus 172 tG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRi-G~~~~~~~~i~~ 250 (389)
T d2gb3a1 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARV-GCLITRNEELIS 250 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHH
T ss_pred ccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccce-eeeeccchhHHH
Confidence 999975 77899999999999999999966654321 2257789999999999999997 9999876544 4
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccC
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
........ ....+.+.+.++..++... .+++...+.++++++.+.+.|++++. .+..|.
T Consensus 251 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~----------------- 311 (389)
T d2gb3a1 251 HAMKLAQG--RLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS----------------- 311 (389)
T ss_dssp HHHHHHHH--SCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS-----------------
T ss_pred HHhhhhhc--cccccccccccccccccccchhcccccccccccchhhhhhhhhhccccccCCC-----------------
Confidence 44333331 1222223333333334333 23555667789999999999999986 344444
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC-
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT- 301 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~- 301 (324)
+|.++|++++.. +..+|.+.+.. ..++.. ..+.+.|+..++.. .+...+++|+|++ ...
T Consensus 312 --~g~~~~~~lp~~-~~~~~~~~ll~--e~~l~~------~~v~v~pg~~f~~~--------~~~~~~~iRis~~-~~~~ 371 (389)
T d2gb3a1 312 --GAFYITAELPVE-DAEEFARWMLT--DFNMDG------ETTMVAPLRGFYLT--------PGLGKKEIRIACV-LEKD 371 (389)
T ss_dssp --BSSEEEEECSSS-CHHHHHHHHHH--SCCBTT------EEEECEEGGGGCSS--------TTTTSSEEEEECC-SCHH
T ss_pred --ceEEEEEeCCCC-CHHHHHHHHHH--hhhhhh------CCEEEEeCcccccC--------CCCCCCEEEEEEc-CCHH
Confidence 688999999732 34455555432 011000 12223343332210 1334689999998 532
Q ss_pred -HHHHHHHHHHHHHhh
Q 020548 302 -LDQRWSQFEKALSRM 316 (324)
Q Consensus 302 -~~~~~~~l~~~l~~~ 316 (324)
.++.++.|.++|+++
T Consensus 372 ~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 372 LLSRAIDVLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 233455566666543
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.9e-27 Score=209.27 Aligned_cols=262 Identities=18% Similarity=0.101 Sum_probs=173.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..+++++++|||+|++++|+|+.+...++. .|.++..++. .|++.+++.+.+++++++++++|+
T Consensus 69 ~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-----~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~ 143 (361)
T d1d2fa_ 69 YMVSELIRQWSETGEGVVIHTPAYDAFYKAIEG-----NQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ 143 (361)
T ss_dssp HHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHH-----TTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred HHHHHHhhhccccccccccccccccchhHHHHh-----hcceEEeecccccccccccccccchhhcccCCceeEEecccc
Confidence 578889999999999999999999999988842 4555544432 289999999967899999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cCCCCcEEEeCCccccccCCCeeEEEEEcC-hh
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGADIIAGAVCGP-AN 141 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~-~~ 141 (324)
||||.+.+ +++|+++|+++|+++|+||+|..+.++. ...+..+++.|+||.++.+|.|+ ||++.+ +.
T Consensus 144 NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~-g~~~~~~~~ 222 (361)
T d1d2fa_ 144 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTG-AYGIIENSS 222 (361)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCC-EEEEECSHH
T ss_pred cccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccc-eeeecchhH
Confidence 99999975 7789999999999999999997664321 11246799999999999999997 998654 33
Q ss_pred HHHHHH-HhhhhhhhccCCCCCHHHHHHHh---cCcc-cHHHHHHHHHHHHHHHHHHHHhCCC--ceeCCCCCCCchhHH
Q 020548 142 LVNSMM-DLHQGALMLLGPTMNPKVAFELS---ERIP-HLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHEL 214 (324)
Q Consensus 142 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~p~~~~~~~~~~ 214 (324)
...... .... ....+.+.+......+ .... ..+.....+.++++.+.+.+.+... .+..|.
T Consensus 223 ~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~--------- 290 (361)
T d1d2fa_ 223 SRDAYLSALKG---RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ--------- 290 (361)
T ss_dssp HHHHHHHHHHT---TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS---------
T ss_pred HHHHHhhhccc---ccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccC---------
Confidence 333333 3322 1333444433332222 1112 2334445567777777777776532 444343
Q ss_pred HHHHhccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 215 LKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
+|.++|++++. ..+...|.+++.. +.|+ . +.|+..+.. ...+++|
T Consensus 291 ----------gg~~~~~~l~~~~~~~~~~~~~Ll~--~~gv-~----------v~pG~~F~~-----------~~~~~vR 336 (361)
T d1d2fa_ 291 ----------STYLAWLDLRPLNIDDNALQKALIE--QEKV-A----------IMPGYTYGE-----------EGRGFVR 336 (361)
T ss_dssp ----------BCSEEEEECGGGCCCHHHHHHHHHH--TTCE-E----------CEEGGGGCG-----------GGTTEEE
T ss_pred ----------ceeEEEEEccCCCCCHHHHHHHHHH--hCCE-E----------EEeccccCC-----------CCCCEEE
Confidence 57788888852 2345566666532 2343 2 233332210 0247899
Q ss_pred EEeccCC--CHHHHHHHHHHHHHhh
Q 020548 294 MSVGYLG--TLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~g~~~--~~~~~~~~l~~~l~~~ 316 (324)
+|++ .. +.++.+++|.++++++
T Consensus 337 is~~-~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 337 LNAG-CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp EECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEc-CCHHHHHHHHHHHHHHHHhc
Confidence 9998 53 2334466666666655
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=3.5e-27 Score=207.98 Aligned_cols=216 Identities=19% Similarity=0.226 Sum_probs=164.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+..++.+++++||.|++++|+|+.+...+.. .|..+..++. .|++++++++ +++++++++++||
T Consensus 89 ~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~p~ 162 (368)
T d1v2da_ 89 EALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFL-----AGAKARLVRLDLTPEGFRLDLSALEKAL-TPRTRALLLNTPM 162 (368)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECEEETTEEECCHHHHHTTC-CTTEEEEEEESSC
T ss_pred HHHHHHhhccccccccccccCCcchhhhhHHHh-----cCCccceeccccccccccCCHHHHHHhh-ccCceEEEEcCCC
Confidence 578889999999999999999999999988842 4555444333 2899999999 8889999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-------CCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
||||.+.+ +++|+++|+++|+++|+|++|..+..... ..+..+++.|+||.++++|+|+ ||++.++++.
T Consensus 163 NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~-g~~~~~~~~~ 241 (368)
T d1v2da_ 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRV-GWIVGPKEFM 241 (368)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCC-EEEECCTTTH
T ss_pred CcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccccccc-cccccccccc
Confidence 99999986 77889999999999999999855433221 1256788999999999999997 9999999999
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELSE---RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+..... ....+.+.+.+..+..++. ...++....+.++++++.+.+.|+++|+++..|.
T Consensus 242 ~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~--------------- 305 (368)
T d1v2da_ 242 PRLAGMRQ-WTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE--------------- 305 (368)
T ss_dssp HHHHHHHH-HHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS---------------
T ss_pred chhhhhhh-ccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCC---------------
Confidence 98887765 1122333333333333332 2234556666679999999999999998877665
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHH
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNY 245 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~ 245 (324)
+|+++|+.+++. +..+++++
T Consensus 306 ----g~~~~~~~l~~~-~~~~ll~~ 325 (368)
T d1v2da_ 306 ----GTYFLMAELPGW-DAFRLVEE 325 (368)
T ss_dssp ----BSSEEEEECTTC-CHHHHHHH
T ss_pred ----ceeEEEEeCCcc-HHHHHHHh
Confidence 678999999853 34455444
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=3.2e-27 Score=211.39 Aligned_cols=204 Identities=15% Similarity=0.199 Sum_probs=149.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+||..++++++++||+|++++|+|+.+...++ ..|.++..++.+ +++++++.. .++++++++++|||
T Consensus 112 ~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~np~N 185 (412)
T d1bw0a_ 112 HGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIGMHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSN 185 (412)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCT
T ss_pred cchhhhhhhhhccccceeeeeccchhhhhhhh-----ccCccccccccccccccchhhHHHHhhh-hccccccccccccc
Confidence 57889999999999999999999999998884 367777776642 789999888 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCccC-------------CCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-------------LGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~-------------~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
|||.+.+ +++|+++|++++++||+||+|..+.++... ....++++|+||.++++|+|+ ||+++
T Consensus 186 PtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~Rv-G~~~~ 264 (412)
T d1bw0a_ 186 PCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLY 264 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEE
T ss_pred cccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCc-ccccc
Confidence 9999975 678888899999999999999776532211 124588899999999999997 99987
Q ss_pred Chh------HHHHHHHhhhhhhhccCCC-CCHHHHHHH-hcCc-ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCC
Q 020548 139 PAN------LVNSMMDLHQGALMLLGPT-MNPKVAFEL-SERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLED 208 (324)
Q Consensus 139 ~~~------~~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~ 208 (324)
+++ .+........ ...++. +.+..+... .... .++....+++.++++.+.+.|.+. +..+..|.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~--- 338 (412)
T d1bw0a_ 265 VDPHGNGPSFLEGLKRVGM---LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR--- 338 (412)
T ss_dssp ECTTCSCHHHHHHHHHHHH---HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC---
T ss_pred cchhhcchhhhhhhccccc---cccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCceecCCC---
Confidence 643 2333322222 122332 222222222 2222 235566677899999999999876 44555455
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
+|.++|..++
T Consensus 339 ----------------gg~~l~~~~~ 348 (412)
T d1bw0a_ 339 ----------------GAMYLMSRID 348 (412)
T ss_dssp ----------------BTTEEEEEEC
T ss_pred ----------------CceEEEEeCC
Confidence 6788888886
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.5e-27 Score=210.67 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=157.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----------------CCHHHHHHhhhcCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRT 64 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----------------~d~~~l~~~l~~~~~ 64 (324)
+|+..++++++.+||.|++++|+|+.+...+.. .|.+.+.++. .|.+++.... .+++
T Consensus 99 ~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~-----~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~ 172 (418)
T d1w7la_ 99 GALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM-----AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-TSRT 172 (418)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHC-CTTE
T ss_pred HHHHHHHHhhccCCceeeccccccchhHHHHHH-----cCCEeeccccccccccccccccccCcccchhhhhccc-cccc
Confidence 688999999999999999999999999988842 4555444332 1566777666 7889
Q ss_pred eEEEEecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc------cCC----CCcEEEeCCccccccCCCe
Q 020548 65 KVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL----GADVVVHSISKFISGGADI 131 (324)
Q Consensus 65 ~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~------~~~----~~d~~~~S~sK~~~~~g~r 131 (324)
+++++++||||||.+.+ +++|+++|+++++++|+||+|..+.++. ... +..+++.|+||.+++||.|
T Consensus 173 ~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~R 252 (418)
T d1w7la_ 173 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWK 252 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGC
T ss_pred cceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCc
Confidence 99999999999999974 6788999999999999999997764321 111 4679999999999999999
Q ss_pred eEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHhCCCceeC
Q 020548 132 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--------IPHLGLRMKEHCHRALIFARRMKKLGLKVLY 203 (324)
Q Consensus 132 ~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 203 (324)
+ ||+++++++++.+..... ....+.+++.+.++..++.. ..++....+.+.++++.+.+.|++.|..+..
T Consensus 253 v-G~~v~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 330 (418)
T d1w7la_ 253 V-GWVLGPDHIMKHLRTVHQ-NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLI 330 (418)
T ss_dssp C-EEEECCHHHHHHHHHHHH-TTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred c-cccccchhhhhhhccccc-cccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcccC
Confidence 7 999999999999888765 22233334444444333221 1234556677899999999999999887776
Q ss_pred CCCCCCchhHHHHHHhccCCCcceEEEEEeC
Q 020548 204 PGLEDHPHHELLKSMANKEYGFGGLLCLDME 234 (324)
Q Consensus 204 p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 234 (324)
|. +|.++|++++
T Consensus 331 P~-------------------gg~f~~~~~~ 342 (418)
T d1w7la_ 331 PQ-------------------GSYFLITDIS 342 (418)
T ss_dssp CS-------------------BSSEEEEECH
T ss_pred CC-------------------ceeEEEEECc
Confidence 76 7889999884
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.4e-27 Score=209.02 Aligned_cols=263 Identities=15% Similarity=0.165 Sum_probs=190.0
Q ss_pred CchHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 1 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 1 ~~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
++||..++++++++||.|++++|.|+.+...+.. .|..+..++.+ |++++++.+ +++++++++++|||
T Consensus 97 ~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-----~g~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~N 170 (382)
T d1u08a_ 97 TEALYAAITALVRNGDEVICFDPSYDSYAPAIAL-----SGGIVKRMALQPPHFRVDWQEFAALL-SERTRLVILNTPHN 170 (382)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECCTTTCCCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred HHHHHHHHhhcccccceEEEecccccchhhhhhh-----ccccceecccccccccCCHHHHhhhh-ccCccEEEECCCCc
Confidence 3688999999999999999999999999888742 45544444432 799999988 88999999999999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCccC----------CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR----------LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~----------~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
|||.+.+ +++|.++|++++++++.|+.|..+...... .+..+++.|+||.++.+|.|+ ||++++++
T Consensus 171 PtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~Ri-G~~v~~~~ 249 (382)
T d1u08a_ 171 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAPAP 249 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECCHH
T ss_pred ccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccc-hhhhccch
Confidence 9999976 567778888999999999998544332211 146799999999999999997 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
+.+.+..... ....+.+.+.+.++..++. ...++....+.+.++++.+.+.++..+..+..|.
T Consensus 250 ~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~--------------- 313 (382)
T d1u08a_ 250 ISAEIRKVHQ-YLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCE--------------- 313 (382)
T ss_dssp HHHHHHHHHH-HHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC---------------
T ss_pred hHHHHHhhhc-ccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhccCCcEEecCC---------------
Confidence 9998877665 2224445556665555554 3344556667788899999999888777776555
Q ss_pred cCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 221 KEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
+|.++|++++. ..+..+|.+++-. +.|+ .+.|+..++.. +..++++|+|++
T Consensus 314 ----gg~~~~~~~~~~~~~d~~e~~~~ll~--e~gV-----------~v~PG~~F~~~---------~~~~~~~Ris~~- 366 (382)
T d1u08a_ 314 ----GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHGV-----------AAIPLSVFCAD---------PFPHKLIRLCFA- 366 (382)
T ss_dssp ----BSSEEEEECTTTCCSCHHHHHHHHHH--HSCE-----------ECEEGGGGCSS---------CCCSCEEEEECC-
T ss_pred ----ceEEEEEecCCCCCCCHHHHHHHHHH--HCCE-----------EEEcchhhCCC---------CCCCCEEEEEEe-
Confidence 78899999972 2345566666431 1333 23444433210 223579999998
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q 020548 299 LGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~ 318 (324)
. +. +.|+++++++.+
T Consensus 367 ~-~~----e~l~~al~RL~~ 381 (382)
T d1u08a_ 367 K-KE----STLLAAAERLRQ 381 (382)
T ss_dssp S-CH----HHHHHHHHHHTT
T ss_pred C-CH----HHHHHHHHHHhC
Confidence 5 22 346677777653
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=1.6e-27 Score=207.28 Aligned_cols=210 Identities=16% Similarity=0.175 Sum_probs=157.2
Q ss_pred HHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHH
Q 020548 7 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 7 ~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
++..++++||+|++++|+|+.+...++ ..|.++..++.++-....+.. .++++++++++|+||||.+.+.+++.
T Consensus 88 ~l~~l~~~~d~v~i~~P~y~~~~~~~~-----~~g~~~v~v~~~~~~~~~~~~-~~~~~~l~l~nP~NPtG~~~s~~~l~ 161 (334)
T d2f8ja1 88 IIYVMMLMFDRSVFFPPTYSCYRIFAK-----AVGAKFLEVPLTKDLRIPEVN-VGEGDVVFIPNPNNPTGHVFEREEIE 161 (334)
T ss_dssp HHHHHHHHSSEEEECSSCCHHHHHHHH-----HHTCCEEECCCCTTSCCCCCC-CCTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHHHhhhccccccccccccccccchh-----ccCCccccccccccccccccc-cccceEEEecccccccceeecHHHhh
Confidence 444456678999999999999998884 378888888875211111222 56889999999999999999988887
Q ss_pred HHHHhcCCEEEEcCCCCcCCCC-----ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCC
Q 020548 87 RLAHDKGVTVVVDNTFSPLVLS-----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM 161 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~~~~~-----~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (324)
+++ ++++++|+||+|..+... ....+..++++|+||.++.+|+|+ ||+++++++++.+...... ...+.+
T Consensus 162 ~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~~~~~~~~i~~l~~~~~~---~~~s~~ 236 (334)
T d2f8ja1 162 RIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRV-GYVVASEKFIDAYNRVRLP---FNVSYV 236 (334)
T ss_dssp HHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCE-EEEEECHHHHHHHHHHSCT---TCSCHH
T ss_pred ccc-cceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhh-hhcccchHHHHHHHHhhcc---cccchh
Confidence 765 568999999998443321 223367899999999999999997 9999999999999887651 233344
Q ss_pred CHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHH
Q 020548 162 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 241 (324)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 241 (324)
.+..+...+...+.+...++.+.++++.+.+.|+++|.++. |. .|+++|+.++. .+...
T Consensus 237 ~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~-------------------~g~f~~~~~~~-~~~~~ 295 (334)
T d2f8ja1 237 SQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRIT-DS-------------------RGNFVFVFMEK-EEKER 295 (334)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEC-CC-------------------CSSEEEEECCH-HHHHH
T ss_pred hhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCCCeEC-CC-------------------CceEEEEECCC-CCHHH
Confidence 44444445555555667778889999999999999988765 33 35678888864 46778
Q ss_pred HHHHhhc
Q 020548 242 LMNYLQN 248 (324)
Q Consensus 242 ~~~~l~~ 248 (324)
+.+.+..
T Consensus 296 ~~~~L~~ 302 (334)
T d2f8ja1 296 LLEHLRT 302 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888774
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=3.2e-27 Score=211.91 Aligned_cols=267 Identities=13% Similarity=0.177 Sum_probs=179.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHHHhhh--------cCCceEEEE
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIV--------QGRTKVLYF 69 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~l~--------~~~~~~v~~ 69 (324)
+|+..++.++++|||+|++++|+|+.+...++ ..|.++..++.+ +++.+...+. +..++++++
T Consensus 115 ~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (420)
T d1vp4a_ 115 QALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVV 189 (420)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred hhHHHHHHhhhccccccccccccccchhHHHH-----HHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEe
Confidence 57889999999999999999999999998884 367777666543 5666554331 123445667
Q ss_pred ecCCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc---------CCCCcEEEeCCccccccCCCeeEEEEE
Q 020548 70 ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---------RLGADVVVHSISKFISGGADIIAGAVC 137 (324)
Q Consensus 70 ~~~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~---------~~~~d~~~~S~sK~~~~~g~r~~G~i~ 137 (324)
++||||||.+.+ +++|+++|+++++++|+||+|..+.++.. ..+..++++|++|++ ++|+|+ ||++
T Consensus 190 ~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~-~~G~Ri-G~~~ 267 (420)
T d1vp4a_ 190 SNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-APGLRI-GMVA 267 (420)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-CGGGCE-EEEE
T ss_pred cCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccc-cccccc-cccc
Confidence 889999999974 67899999999999999999976654221 125678889999987 589997 9999
Q ss_pred cChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhC-----CCceeCCCCCCC
Q 020548 138 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKL-----GLKVLYPGLEDH 209 (324)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~~p~~~~~ 209 (324)
+++++++.+.+... ....+.+...+..++..+.... ++....+.++++++.+.+.|++. +..+..|.
T Consensus 268 ~~~~~i~~l~~~~~-~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~---- 342 (420)
T d1vp4a_ 268 GSKEFIRKIVQAKQ-SADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSE---- 342 (420)
T ss_dssp CCHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS----
T ss_pred ccchhhhhhhhhhh-hccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCC----
Confidence 99999999887765 2223333344443333333222 23455566788888888888775 33444444
Q ss_pred chhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCC
Q 020548 210 PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 289 (324)
Q Consensus 210 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
+|.++|++++...+...+.+.+.. .|+ .+.|+..++. .+...
T Consensus 343 ---------------gg~f~~~~~~~~~d~~~~~~~l~~---~gV-----------~v~PG~~F~~---------~~~~~ 384 (420)
T d1vp4a_ 343 ---------------GGLFIWLTLPEGFDTWEMFEYAKR---KKV-----------FYVPGRVFKV---------YDEPS 384 (420)
T ss_dssp ---------------BSSEEEEECCTTCCTTTTHHHHHH---HTE-----------ECEEGGGGCT---------TCCCC
T ss_pred ---------------ceEEEEEECCCCCCHHHHHHHHHH---CCe-----------EEEechhhCC---------CCCCC
Confidence 688999999744344455555553 332 2234433211 12235
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhhhhc
Q 020548 290 GLVRMSVGYLGTLDQ---RWSQFEKALSRMQDS 319 (324)
Q Consensus 290 ~~iR~s~g~~~~~~~---~~~~l~~~l~~~~~~ 319 (324)
+++|+|++ ..+.++ .+++|.+++++..++
T Consensus 385 ~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~ 416 (420)
T d1vp4a_ 385 PSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE 416 (420)
T ss_dssp SEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHh
Confidence 79999998 654443 456677777766543
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.95 E-value=1e-26 Score=207.47 Aligned_cols=263 Identities=14% Similarity=0.153 Sum_probs=175.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC----CHHHHH----Hhhh--cCCceEEEEec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVN----SAIV--QGRTKVLYFES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~----~~l~--~~~~~~v~~~~ 71 (324)
+|+..++.+++++||+|++++|+|+.+...+. ..|.++..++.+ +...+. .... +..+.++++++
T Consensus 105 ~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (403)
T d1wsta1 105 QALDLIGRVFLNPGDPIVVEAPTYLAAIQAFK-----YYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVST 179 (403)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCS
T ss_pred HHHHHHHHHHhhcCCccccCCCcchhhhHHHh-----hccccceeEeecccCCccccccccchhhhhccccccccccccc
Confidence 57888999999999999999999999999884 366666666543 222221 1111 34556777789
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCC-----c----cCCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P----ARLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~-----~----~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
|+||||.+.+ +++|+++|++||++||+||+|..+.++ + .+.+..++++|+||+++ +|+|+ ||++++
T Consensus 180 p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~Ri-G~~i~~ 257 (403)
T d1wsta1 180 FQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILA-PGFRI-GWVAAH 257 (403)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTC-GGGCC-EEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceec-Ccccc-cccccc
Confidence 9999999975 568888999999999999999766432 1 12367899999999995 89997 999999
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHhC---CCceeCCCCCCCchhH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHE 213 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~p~~~~~~~~~ 213 (324)
+++++.+..... ....+.+...+.....+..... ++....+.+.++++.+.+.|.+. +..+..|.
T Consensus 258 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~-------- 328 (403)
T d1wsta1 258 PHLIRKMEIAKQ-SIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPE-------- 328 (403)
T ss_dssp HHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCS--------
T ss_pred hHHHHHHHHHHh-hhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCC--------
Confidence 999988877654 1112333333333333332221 13445566678888888888875 33444454
Q ss_pred HHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 214 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 214 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
+|.++|++++...+...+.+.+.. .|+ .+.|+..++. .+..++++|
T Consensus 329 -----------gg~~~~~~~~~~~~~~~~~~~l~~---~gV-----------~v~pg~~f~~---------~~~~~~~iR 374 (403)
T d1wsta1 329 -----------GGMFVRVTLPEGIDTKLMMERAVA---KGV-----------AYVPGEAFFV---------HRDKKNTMR 374 (403)
T ss_dssp -----------BSSEEEEECCTTCCTTTTHHHHHH---TTE-----------ECEEGGGGST---------TCCCCSEEE
T ss_pred -----------ceeEEEEECCCCCCHHHHHHHHHH---CCE-----------EEEechhhcC---------CCCCCCEEE
Confidence 688999999855445566666664 332 2233332211 012358999
Q ss_pred EEeccCCCHHH---HHHHHHHHHHh
Q 020548 294 MSVGYLGTLDQ---RWSQFEKALSR 315 (324)
Q Consensus 294 ~s~g~~~~~~~---~~~~l~~~l~~ 315 (324)
+|++ ..+.++ .+++|.++|++
T Consensus 375 i~~~-~~~~~~l~~al~rl~~~l~~ 398 (403)
T d1wsta1 375 LNFT-YVPEETIREGVRRLAETIKE 398 (403)
T ss_dssp EECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred EEec-CCCHHHHHHHHHHHHHHHHH
Confidence 9999 644433 34555555554
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.4e-26 Score=199.25 Aligned_cols=214 Identities=14% Similarity=0.170 Sum_probs=154.8
Q ss_pred chHHHHHHHccCCCC-EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd-~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
+||..+++++++||| .|+++.|+|..+...++ ..|.++..++.+ |+++++..+ .++++|++++||||
T Consensus 84 eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~-----~~g~~v~~~~~~~~~~~d~~~l~~~~--~~~~~v~~~~pnNP 156 (354)
T d1fg7a_ 84 EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTVPTLDNWQLDLQGISDKL--DGVKVVYVCSPNNP 156 (354)
T ss_dssp HHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEECCCCTTSCCCHHHHHTSC--TTEEEEEEESSCTT
T ss_pred HHHHHHHHHhhccccccccccccccccchhhhh-----ccCceeeccccccccccchhhhhhcc--cccceeeccCCCcc
Confidence 588999999999998 58889999999998884 367777777643 788888766 47999999999999
Q ss_pred cccccChHHHHHHH--HhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 76 TLAVANIPELSRLA--HDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 76 tG~~~~~~~i~~l~--~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
||.+.+.+++..++ .+++.++|+||+|..+..+ .......++++|+||.||++|+|+ ||+++++++++.+.
T Consensus 157 tG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRi-Gy~i~~~~~i~~l~ 235 (354)
T d1fg7a_ 157 TGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRC-GFTLANEEVINLLM 235 (354)
T ss_dssp TCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCC-EEEEECHHHHHHHH
T ss_pred ceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCCccccCCCcccc-ccccccchhhhhhh
Confidence 99998755443332 3357889999998665422 112357799999999999999997 99999999999998
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+.... ...+++.+..+..++.. ......+.+++.++++.+.+.|.+.+. ....|+
T Consensus 236 ~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~------------------- 293 (354)
T d1fg7a_ 236 KVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS------------------- 293 (354)
T ss_dssp HHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-------------------
T ss_pred hhcCc---cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCC-------------------
Confidence 76651 22233333333222211 122345556678888999999999876 344465
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhc
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
+|+++|+++++. ..+.+.|..
T Consensus 294 ~~~f~~~~~~~~---~~~~~~L~~ 314 (354)
T d1fg7a_ 294 ETNYILARFKAS---SAVFKSLWD 314 (354)
T ss_dssp SSSEEEEEETTH---HHHHHHHHH
T ss_pred CceEEEEeCCCH---HHHHHHHHH
Confidence 678999999753 345555553
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.94 E-value=4.8e-26 Score=199.71 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=165.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
++..++..+ +++.+++..|.|+.+..... ..+..+..++.. ..+++.+++ .+++++|++++|||||
T Consensus 86 ~~~~~~~~~--~~~~~~v~~p~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~v~l~nP~NPt 157 (355)
T d1lc5a_ 86 SIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLREADGWQLTDAILEAL-TPDLDCLFLCTPNNPT 157 (355)
T ss_dssp HHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGTTCCCTTHHHHC-CTTCCEEEEESSCTTT
T ss_pred HHHHHHhhh--ccccccccCCccceeccccc-----cccccceeeeeeccCCccceeeeeecc-ccccceeeeecccCcc
Confidence 344444433 35666677788888776663 244555555542 234566666 7899999999999999
Q ss_pred ccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCCCeeEEEEEcChh-HHHH
Q 020548 77 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPAN-LVNS 145 (324)
Q Consensus 77 G~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~-~~~~ 145 (324)
|.+.+ +++|+++|+++++++|+||+|..+.... ...+..+++.|+||.|+++|.|+ ||++++.+ +.+.
T Consensus 158 G~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~-G~~i~~~~~~~~~ 236 (355)
T d1lc5a_ 158 GLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRL-GYLVNSDDAAMAR 236 (355)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCC-EEEECCCHHHHHH
T ss_pred cccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccc-cceeccchhhhHH
Confidence 99976 6688888999999999999996654321 12257899999999999999997 99998765 4455
Q ss_pred HHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 146 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
++.... ....+.+.+..+..++....++...+++++++++++.+.|.+.+.....|. .
T Consensus 237 ~~~~~~---~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~-------------------~ 294 (355)
T d1lc5a_ 237 MRRQQM---PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPG-------------------R 294 (355)
T ss_dssp HHHHSC---TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-------------------S
T ss_pred HHhhcC---CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcEECCC-------------------C
Confidence 544332 122233334444444444445666777788999999999999865223455 5
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
|+++|+.++. +...+.+.+.. .|+ .+.|+..+ .+..++++|||+| . .+.
T Consensus 295 ~~f~~~~~~~--~~~~~~~~L~~---~gv-----------~vr~~~~f-----------~~~~~~~iRis~~-~---~~e 343 (355)
T d1lc5a_ 295 ANYLLLRCER--EDIDLQRRLLT---QRI-----------LIRSCANY-----------PGLDSRYYRVAIR-S---AAQ 343 (355)
T ss_dssp SSEEEEEESC--TTCCHHHHHHT---TTE-----------ECEECTTS-----------TTCCTTEEEEECC-C---HHH
T ss_pred CEEEEEECCC--CHHHHHHHHHH---CCc-----------EEEeCccC-----------CCCCCCEEEEEeC-C---HHH
Confidence 7889999973 23345555553 233 22232222 1334689999999 3 344
Q ss_pred HHHHHHHHHhh
Q 020548 306 WSQFEKALSRM 316 (324)
Q Consensus 306 ~~~l~~~l~~~ 316 (324)
++++.++|+++
T Consensus 344 ~~~li~aL~~i 354 (355)
T d1lc5a_ 344 NERLLAALRNV 354 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 56777766654
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.4e-26 Score=203.24 Aligned_cols=272 Identities=16% Similarity=0.185 Sum_probs=189.6
Q ss_pred hHHHHHHH----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQ----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|++.++.+ ..++||+|++.+.+|++....|+.+..+ .|+++.+++.+ |++.+++++ +++|++|++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~-~g~~v~~~~~~~~g~~~~~~~~~~i-~~~t~lv~~~~v~ 173 (405)
T d1jf9a_ 96 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVS 173 (405)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBC
T ss_pred HHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHH-cCcEEEEECCCCCCcCCHHHHHHhc-cCCcEEEEEecCC
Confidence 45555554 3688999999999999999999777666 79999998754 788999988 8999999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.||.+.|+++|.++||++|+++++|.++ .+ ...+..+.++|++++|+|||+|++| .|+++.++++.+.+.+...
T Consensus 174 ~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G---~g~l~v~~~~~~~~~~~~~ 250 (405)
T d1jf9a_ 174 NVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG---IGILYVKEALLQEMPPWEG 250 (405)
T ss_dssp TTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSS---CEEEEECHHHHTTCCCSSC
T ss_pred CcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCC---ceeeeechhhhcccCcccc
Confidence 99999999999999999999999999998 33 3445566799999999999997766 5899888887765543211
Q ss_pred h------------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCC
Q 020548 152 G------------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLE 207 (324)
Q Consensus 152 ~------------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~ 207 (324)
+ ...+..+++.......+...++. .+...++.....+.+.+.++..+. ....|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~-- 328 (405)
T d1jf9a_ 251 GGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-- 328 (405)
T ss_dssp SSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--
T ss_pred cccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc--
Confidence 1 01122334443333322222222 223333345666777777777766 344343
Q ss_pred CCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCC
Q 020548 208 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 287 (324)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
.++++++|.+++.. ...+...|.. .|+ .++.|..++.. .....+.
T Consensus 329 ----------------~r~~ivsf~~~~~~-~~~~~~~L~~---~gI-~v~~G~~c~~~--------------~~~~~~~ 373 (405)
T d1jf9a_ 329 ----------------NRLGVIAFNLGKHH-AYDVGSFLDN---YGI-AVRTGHHCAMP--------------LMAYYNV 373 (405)
T ss_dssp ----------------TCCSEEEEEETTCC-HHHHHHHHHH---TTE-ECEEECTTCHH--------------HHHHTTC
T ss_pred ----------------CcCcEEEEEcCCCC-HHHHHHHHHH---CCc-EEEccchhhhh--------------HHHhcCC
Confidence 35679999998321 2333344432 332 55666543221 1122233
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhhhh
Q 020548 288 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 288 ~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
++.||+|+| .++++++++.+.++|+++.+
T Consensus 374 -~g~iRiS~~-~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 374 -PAMCRASLA-MYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp -SCEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 478999999 99999999999999998865
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.94 E-value=1.2e-25 Score=200.32 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=140.1
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEEecCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~~~~~ 73 (324)
++..+++++++|||+|++++|+|+.+...++ ..|.+++.++.. +++.+.+.+. .++++++++++||
T Consensus 111 ~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~ 185 (401)
T d7aata_ 111 VGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH 185 (401)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSC
T ss_pred HHHHhhHhhcCCCceEEEecCCCcchhhHHH-----HcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCC
Confidence 5677788899999999999999999998884 378888877652 6777777663 3578999999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------------CCCCcEEEeCCccccccCCCeeEEEEEc
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCG 138 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------------~~~~d~~~~S~sK~~~~~g~r~~G~i~~ 138 (324)
||||.+++ +++|+++|+++++++|.||+|..+.++.. .....+++.|+||.++++|+|+ ||+++
T Consensus 186 NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~Ri-G~~~~ 264 (401)
T d7aata_ 186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTV 264 (401)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEE
T ss_pred CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecccc-ceeec
Confidence 99999975 67899999999999999999977765321 1145688899999999999997 99998
Q ss_pred ChhHHHHHHHhhhh------hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 139 PANLVNSMMDLHQG------ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 139 ~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
+.++.+.+...... ....+.+.+.+..+...+... ..++...+++.++++.+.+.|++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 338 (401)
T d7aata_ 265 ICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS 338 (401)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 87766655433221 111222223333333333321 12334556678899999999999864
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.93 E-value=1.7e-24 Score=191.51 Aligned_cols=263 Identities=17% Similarity=0.194 Sum_probs=184.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|++.++.++ .++||+|++++++|++....++....+ .|+++..++.+ ..+.+++++ +++++++++++++
T Consensus 78 ~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~l~~~i-~~~t~~v~i~~~~ 155 (381)
T d1elua_ 78 TGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHL-GPKTRLVILSHLL 155 (381)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGGSSSSCHHHHHHTTC-CTTEEEEEEESBC
T ss_pred HHhhhcchhhhhcCCceEEEeccccceeeecccccccc-ccccccccccccccccchHHHHHHhhh-ccccccccccccc
Confidence 4677888887 689999999999999988888665555 78999888763 255666777 7899999999999
Q ss_pred CCcccccChHHHHHHHHhc----CCEEEEcCCCC--cCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDK----GVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~----~~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
|+||.+.|+++|.++|+++ ++++++|++++ ....+..+.++|+++.|+||++++|.+. |+++.+++..+.+.
T Consensus 156 n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~--g~l~~~~~~~~~~~ 233 (381)
T d1elua_ 156 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGV--GGLYIHGDCLGEIN 233 (381)
T ss_dssp TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTC--EEEEECTTTGGGCC
T ss_pred ccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchh--hHHHhhHHHHHhcC
Confidence 9999999999999999984 69999999982 2234445568999999999999876433 88887777666554
Q ss_pred Hhhhh------------------hhhccCCCCCHHHHHHHhc------CcccHHHHHHHHHHHHHHHHHHHHhCCC-cee
Q 020548 148 DLHQG------------------ALMLLGPTMNPKVAFELSE------RIPHLGLRMKEHCHRALIFARRMKKLGL-KVL 202 (324)
Q Consensus 148 ~~~~~------------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~ 202 (324)
+...+ ......+++.......+.. .......+.++..++++++.+.|++.+. ++.
T Consensus 234 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 313 (381)
T d1elua_ 234 PTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL 313 (381)
T ss_dssp CCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEec
Confidence 22110 0111223333322221111 1222344566778889999999999865 444
Q ss_pred CCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHH
Q 020548 203 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 282 (324)
Q Consensus 203 ~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
.+.- ..+++++|.+++....+.+.+.|+. .|+ .++ .
T Consensus 314 ~~~~-----------------~~~~~vsf~~~~~~~~~~i~~~L~~---~gi-~v~------~----------------- 349 (381)
T d1elua_ 314 ATSA-----------------PQAGLVSFTVDSPLGHRAIVQKLEE---QRI-YLR------T----------------- 349 (381)
T ss_dssp CSSC-----------------CSSSEEEEEECSSSCHHHHHHHHHH---TTE-ECE------E-----------------
T ss_pred CCCC-----------------ccccEEEEEcCCCCCHHHHHHHHHh---CCc-EEE------e-----------------
Confidence 3321 2467999998855445566666664 232 110 0
Q ss_pred HhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhh
Q 020548 283 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 283 ~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+ .++++|+|+| ..++.++++.+.++|+.+
T Consensus 350 --~~-~~~~lRis~~-~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 350 --IA-DPDCIRACCH-YITDEEEINHLLARLADF 379 (381)
T ss_dssp --ET-TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred --cC-CCCEEEEecC-CCCCHHHHHHHHHHHHhh
Confidence 01 2478999999 899988888888888765
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.5e-24 Score=192.51 Aligned_cols=277 Identities=16% Similarity=0.140 Sum_probs=176.0
Q ss_pred hHHHHHHHc----cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~----~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|++.++.++ +++||+|+++++.|+++...++.. .. .|+++..++.+ |++++++++ +++|++|++++++
T Consensus 77 ~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~~~~d~~~~~~~i-~~~T~lv~is~~~ 153 (391)
T d1p3wa_ 77 SDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVN 153 (391)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBC
T ss_pred HHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHH-HH-cCCEEEEeCCCCCCeEcHHHHHHhC-CCCcEEEEEECCC
Confidence 455555543 589999999999999988777532 23 68999988764 799999999 9999999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC-Cc-CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~-~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
||||.+.|+++|.++||++|+++++|++| .+ ...+....+.|+++.|++|++|++| .|+++.+++......+...
T Consensus 154 n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g---~g~~~~~~~~~~~~~~~~~ 230 (391)
T d1p3wa_ 154 NEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG---IGALYVRRKPRVRIEAQMH 230 (391)
T ss_dssp TTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSS---CEEEEECBTTBCCCCCSSC
T ss_pred CCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCc---eEEEEEecchhcccCCccc
Confidence 99999999999999999999999999998 22 2345556689999999999997776 4777776665444433222
Q ss_pred hhh---hccCCCCC-HHHHHHH--hc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 152 GAL---MLLGPTMN-PKVAFEL--SE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 152 ~~~---~~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
+.. ....+... .....+. .. .........++..+.+..+.+.|.+.+.....+.... +
T Consensus 231 gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---------------~ 295 (391)
T d1p3wa_ 231 GGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH---------------G 295 (391)
T ss_dssp SSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTT---------------S
T ss_pred CCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccc---------------c
Confidence 100 01111222 1221111 11 1112233445556667777777777665332222111 2
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEeccCC
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLG 300 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~~~ 300 (324)
...++.|.++.. ....+...+.. ++++.|..+...... .....+..|++ ++.||+|+| ..
T Consensus 296 ~~~~~~~~~~~~-~~~~~~~~l~~------i~v~~G~~c~~~~~~--------~~~~l~~~g~~~~~~~g~iRiS~~-~~ 359 (391)
T d1p3wa_ 296 APNILNVSFNYV-EGESLIMALKD------LAVSSGSACTSASLE--------PSYVLRALGLNDELAHSSIRFSLG-RF 359 (391)
T ss_dssp CTTEEEEEETTS-CHHHHHHHTTT------EECBCCCC------C--------CCHHHHHHTCCHHHHHTEEEEECC-TT
T ss_pred CceEEEEEeCCC-ChHHHHHHhCC------CEEEccccccCCccc--------hhHHHHHcCCCccccCCEEEEecC-CC
Confidence 345677777642 34556666653 355555443211110 11222334443 368999999 88
Q ss_pred CHHHHHHHHHHHHHhh
Q 020548 301 TLDQRWSQFEKALSRM 316 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~ 316 (324)
++.++++.+.++|+++
T Consensus 360 nt~edid~l~~~l~~~ 375 (391)
T d1p3wa_ 360 TTEEEIDYTIELVRKS 375 (391)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8777777666666553
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.92 E-value=1.4e-23 Score=187.02 Aligned_cols=275 Identities=17% Similarity=0.172 Sum_probs=188.9
Q ss_pred hHHHHHHH----ccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLMQ----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~----~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+++.++.+ -.++||+|++++-+|++....++....+ .|.++..++.+ +.+.+++++ +++|++|.+++.+
T Consensus 96 ~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~l~~~~-~~~t~lv~i~~~~ 173 (408)
T d1t3ia_ 96 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHIS 173 (408)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBC
T ss_pred HHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhc-cCceEeeeeccccccccHHHhhhcc-CCCceEEEEeccc
Confidence 44455544 3678999999999999998888655555 68888888753 799999998 8999999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 151 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~ 151 (324)
|.||...|+++|.++|+++|+++++|.++ +....+..++++|++++|++||+|++| .|+++.+++......+...
T Consensus 174 ~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G---~g~l~v~~~~~~~~~p~~~ 250 (408)
T d1t3ia_ 174 NTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFG 250 (408)
T ss_dssp TTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSC
T ss_pred ccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCC---ccccccchhhhhcCCceec
Confidence 99999999999999999999999999998 333445556699999999999987766 5999988887765543221
Q ss_pred hh-----------------hhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCC
Q 020548 152 GA-----------------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLED 208 (324)
Q Consensus 152 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~ 208 (324)
+. ..+..+++.......+...++. .+...++..++.+++.+.+++.+. .+..|.-..
T Consensus 251 g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 330 (408)
T d1t3ia_ 251 GGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH 330 (408)
T ss_dssp STTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG
T ss_pred CCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccc
Confidence 10 0122334443322222222222 223334456778888888888865 444333110
Q ss_pred CchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC
Q 020548 209 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 288 (324)
Q Consensus 209 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (324)
...+++++|.+++. +...+...|.. .|+ .++.|..++. .. ....+ .
T Consensus 331 --------------~~~~~iv~f~~~~~-~~~~v~~~L~~---~gI-~v~~G~~c~~------~~--------~~~~~-~ 376 (408)
T d1t3ia_ 331 --------------GDRAALASFNVAGL-HASDVATMVDQ---DGI-AIRSGHHCTQ------PL--------HRLFD-A 376 (408)
T ss_dssp --------------SCBCSEEEEEETTB-CHHHHHHHHHT---TTE-ECBCSCTTCH------HH--------HHHTT-C
T ss_pred --------------cCcceEEEEEeCCC-CHHHHHHHHhh---CCc-EEecCccccc------HH--------HHhhc-C
Confidence 12577999998842 23444455543 343 5566654431 11 11122 2
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhhh
Q 020548 289 AGLVRMSVGYLGTLDQRWSQFEKALSRMQ 317 (324)
Q Consensus 289 ~~~iR~s~g~~~~~~~~~~~l~~~l~~~~ 317 (324)
++.||+|+| .++++++++.+.++|+++-
T Consensus 377 ~g~vRiS~~-~ynt~~did~li~~L~~~~ 404 (408)
T d1t3ia_ 377 SGSARASLY-FYNTKEEIDLFLQSLQATI 404 (408)
T ss_dssp CCCEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 478999999 9999999999999988764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.92 E-value=2.7e-24 Score=191.06 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=129.7
Q ss_pred chHHHHHHHc--------cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~--------~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
++|.+++.++ +.|||+|+++.|.|+.|....+. ++.+...++. |.+.+++++ +++++++++++||
T Consensus 134 eli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~-----~~~~~~~~~~-D~~~~~~~~-~~~~~ii~l~sPn 206 (425)
T d2hoxa1 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-----FDKKGYVWAG-NAANYVNVS-NPEQYIEMVTSPN 206 (425)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-----SCBTTEEEEE-EGGGGTTCS-CGGGEEEEEESSC
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHH-----cCCCCCccCC-CHHHHHhhC-CCCceEEEEECCC
Confidence 4678888887 57899999999999999887742 3333222222 677777777 7899999999999
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCcCCCC--ccCCCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHhh
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS--PARLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLH 150 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~--~~~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~~ 150 (324)
||||.+.. +-.+++.+|.||+|....+. +.....+++++|+||.|+++|+|+ ||++ .++.+.+.+....
T Consensus 207 NPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S~SK~fglaGlRi-Gw~i~~~~~i~~~~~~~~ 278 (425)
T d2hoxa1 207 NPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYM 278 (425)
T ss_dssp TTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHH
T ss_pred CCCcchhh-------hhhhCCEEEEeccccCccccchhhhcCCeEEEEeCHHhccCcchhe-eeEEeCCHHHHHHHHHhh
Confidence 99998742 22358999999999432222 223368999999999999999998 9974 5667778887766
Q ss_pred hhhhhccCCCCCHHHHHHHhcC------------cccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 151 QGALMLLGPTMNPKVAFELSER------------IPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
. ..+.+.+.+.|.++..++.. .+.++...+.+.++++.+.+.|++.+.
T Consensus 279 ~-~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~ 338 (425)
T d2hoxa1 279 T-KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR 338 (425)
T ss_dssp H-HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred c-cCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 22344455555554443321 122444556678888999999988764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.90 E-value=1.7e-23 Score=186.82 Aligned_cols=184 Identities=9% Similarity=0.014 Sum_probs=127.6
Q ss_pred HccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEec----C----CCHHHHHHhhh--cCCceEEEEecCCCCcccc
Q 020548 10 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD----I----SDHEMVNSAIV--QGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 10 ~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~----~----~d~~~l~~~l~--~~~~~~v~~~~~~nptG~~ 79 (324)
++++|||+|++++|+|+.+...++. .|.+...++ . .|++.+++.+. .++++++++++||||||.+
T Consensus 125 ~~~~pGd~Vlv~~P~y~~y~~~~~~-----~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v 199 (412)
T d1ajsa_ 125 GTNNKDTPVYVSSPTWENHNGVFTT-----AGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTD 199 (412)
T ss_dssp SSSCCCSCEEEEESCCTHHHHHHHH-----TTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCC
T ss_pred hcCCCCCEEEEeCCcchhhHHHHHH-----cCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCC
Confidence 4479999999999999999998852 454432221 1 16676666542 4678899999999999999
Q ss_pred cC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc------------CCCCcEEEeCCccccccCCCeeEEEEEcChhHHH
Q 020548 80 AN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVN 144 (324)
Q Consensus 80 ~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~------------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~ 144 (324)
++ +++|+++|++||+++|+||+|..+.++.. .....+++.|+||.++++|+|+ ||++.+....+
T Consensus 200 ~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~~~~ 278 (412)
T d1ajsa_ 200 PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVAKEPD 278 (412)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEECSSHH
T ss_pred CCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCc-cccccchhHHH
Confidence 75 77999999999999999999977754321 1146788999999999999997 99988766555
Q ss_pred HHHHhhhh------hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 145 SMMDLHQG------ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 145 ~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
.+...... ....+.+...+..+..+.... ..+....+++.++++.+.+.|++++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~ 346 (412)
T d1ajsa_ 279 SILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT 346 (412)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44332221 001122222333333233221 12344566678899999999998864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.90 E-value=1.6e-22 Score=180.46 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=130.0
Q ss_pred HHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccc
Q 020548 9 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 9 ~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~~~~~nptG~~ 79 (324)
...+.|||+|++++|+|+.+...++ ..|.++..++.. +.+.+.+.+. +++++++++++||||||.+
T Consensus 118 ~~~~~~gd~Vlip~P~~~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~ 192 (412)
T d1yaaa_ 118 FSKFFPDKLVYLSKPTWANHMAIFE-----NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLD 192 (412)
T ss_dssp HHHHCTTCCEEEEESCCTTHHHHHH-----TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCC
T ss_pred HhccCCCCEEecccccCchhHHHHH-----HcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCcccc
Confidence 3457899999999999999999884 367777766642 6666666653 3567789999999999999
Q ss_pred cC---hHHHHHHHHhcCCEEEEcCCCCcCCCCc---------------cCCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 80 AN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---------------ARLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 80 ~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~---------------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
.+ +++|+++|+++++++|+||+|.++.++. ...+..+++.|+||.++++|+|+ ||++++++
T Consensus 193 ~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~ 271 (412)
T d1yaaa_ 193 PTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALT 271 (412)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECC
T ss_pred CCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCce-EEEEEchh
Confidence 75 7789999999999999999997776432 11245699999999999999997 99988765
Q ss_pred HHHHHHHhhh-------h---hhhccCCCCCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 142 LVNSMMDLHQ-------G---ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 142 ~~~~l~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
....+..... . ....+.+...+..+..++... .+++...+++.++++.+.+.|++++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~ 346 (412)
T d1yaaa_ 272 KQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT 346 (412)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4322211110 0 111222233333333333321 22445556778899999999998764
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=1.1e-23 Score=185.00 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=124.5
Q ss_pred chHHHHHHHccCCCCEE-EEc-CCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcc-c
Q 020548 2 SAISSVLMQLCSSGGHV-VAA-RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL-A 78 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~v-l~~-~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG-~ 78 (324)
+|+..++.++. +||.| +++ .|+|+++...++ ..|.++ ++.+|++++++++ +++|++|++++|+||++ .
T Consensus 79 ~a~~~~l~al~-~~~~vi~~~~~~~~~~~~~~~~-----l~g~~~--v~~~d~e~l~~~i-~~~tk~i~~~~p~n~~~~~ 149 (366)
T d2aeua1 79 SAILATILALK-PKKVIHYLPELPGHPSIERSCK-----IVNAKY--FESDKVGEILNKI-DKDTLVIITGSTMDLKVIE 149 (366)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSSSCCTHHHHHHH-----HTTCEE--EEESCHHHHHTTC-CTTEEEEEECBCTTSCBCC
T ss_pred HHHHHHHHHhC-CCCEEEEecCCCcchhHHHHHH-----hcCCeE--ECCCCHHHHHHhc-CCCceEEEEEecCCCCcCC
Confidence 57888888865 55554 444 589999998873 356654 4566999999999 89999999999988754 5
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcCC------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPLV------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~~------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
..++++|+++|+++|+++++||+|+... ..+.+.++|++++|+||.++ |+| +||+++++++++.++....
T Consensus 150 ~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~--g~~-~G~i~~~~~~i~~~~~~~~- 225 (366)
T d2aeua1 150 LENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME--GPR-GGLLAGKKELVDKIYIEGT- 225 (366)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS--SCS-CEEEEEEHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccc--ccc-eeEEEecHHHHHHHHHHHh-
Confidence 6789999999999999999999994321 12335589999999999876 456 4999999999999988766
Q ss_pred hhhccCCCCCHHHHHHHhcCcccH-HHHHHHHHHHHHH
Q 020548 153 ALMLLGPTMNPKVAFELSERIPHL-GLRMKEHCHRALI 189 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 189 (324)
..+..+++..++.++..++.+ ..+++++.++++.
T Consensus 226 ---~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~ 260 (366)
T d2aeua1 226 ---KFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 260 (366)
T ss_dssp ---TTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---cccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555444444333321 1234444444443
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.5e-23 Score=183.20 Aligned_cols=189 Identities=14% Similarity=0.097 Sum_probs=131.8
Q ss_pred HHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEEecCCCC
Q 020548 5 SSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNP 75 (324)
Q Consensus 5 ~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~~~~~np 75 (324)
...+...+.+||.|++++|+|+.+...++ ..|.++..++.. +...+.+... .++++++++++||||
T Consensus 110 ~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NP 184 (396)
T d2q7wa1 110 AADFLAKNTSVKRVWVSNPSWPNHKSVFN-----SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHHHHHSCCCEEEEEESCCTHHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred HHHHHhhcccceEEEEecCCCccchHHHH-----HcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCC
Confidence 33444557899999999999999998884 367777776642 4555555431 457889999999999
Q ss_pred cccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------CCCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 76 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 76 tG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
||.+.+ +++|+++|+++++++|+||+|.++.++.. .....+++.|+||.++++|+|+ ||++++..
T Consensus 185 TG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~ 263 (396)
T d2q7wa1 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERV-GACTLVAA 263 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECS
T ss_pred cCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCc-cccccchh
Confidence 999975 66889999999999999999987765421 1245688899999999999998 99988876
Q ss_pred HHHHHHHhhhh---hhh-ccCCC--CCHHHHHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 142 LVNSMMDLHQG---ALM-LLGPT--MNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 142 ~~~~l~~~~~~---~~~-~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
..+........ ... ...+. ..+.++..++... +.+....++++++++.+.+.|++++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 334 (396)
T d2q7wa1 264 DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA 334 (396)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66555443221 001 12222 2222333233221 22344556678899999999999864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=4.4e-23 Score=181.05 Aligned_cols=193 Identities=19% Similarity=0.271 Sum_probs=137.8
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh----cCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV----QGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~----~~~~~~v~~~ 70 (324)
+|+.+++.++++|||+|+++.++|.+....++ ..|.++..++.+ |++++++++. ..++++|+++
T Consensus 73 ~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~-----~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~ 147 (364)
T d2e7ja1 73 EAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 147 (364)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEeecccccccchHHH-----hccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEee
Confidence 57888999999999999999999998887763 368888888653 7899998883 2346789999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCc--CCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~--~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+|+||||.+.|+++|.++|++||+++++|++|+. +..+..+.++|++++|+||++++++ ++ ||++.++++.+.+..
T Consensus 148 ~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g-~~-g~l~~~~~~~~~~~~ 225 (364)
T d2e7ja1 148 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASG-PI-GVMGMKEEWAEIVLR 225 (364)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCS-SC-EEEEECTTTTTTTTC
T ss_pred cCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCC-CE-EEEEECHHHHHHHHh
Confidence 9999999999999999999999999999999932 2334445689999999999998865 54 999999887766543
Q ss_pred hhhh----hhhccC-CCCCHHHHHHHhcCcccHH---HHHHHHHHHHHHHHHHHHhCCCcee
Q 020548 149 LHQG----ALMLLG-PTMNPKVAFELSERIPHLG---LRMKEHCHRALIFARRMKKLGLKVL 202 (324)
Q Consensus 149 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~ 202 (324)
.... .....+ ...... ...+...+.... .+..+..++++++.+.|++.+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 286 (364)
T d2e7ja1 226 RSEKYKNKEVELLGCTARGAT-IITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQL 286 (364)
T ss_dssp BCSSCTTSBGGGTTCCCCSHH-HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hccccCcccccccccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 2210 000111 112221 111222222222 2233345677889999999887544
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.2e-24 Score=191.75 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=109.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEEecCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~~~~~ 73 (324)
++..++..++.|||+|++++|+|+.+...++ ..|.++..++.. +.+++.+.+. .++++++++++||
T Consensus 109 ~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 183 (397)
T d3tata_ 109 KVGADFLKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCH 183 (397)
T ss_dssp HHHHHHHHHHCSSCCCEECSSCCTTHHHHHH-----TTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSC
T ss_pred HHHHHHhhhcCCCCcceecccCccccHHHHH-----HcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCC
Confidence 3556666778999999999999999999984 378888887763 5666666652 3567889999999
Q ss_pred CCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------CCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 74 NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 74 nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
||||.+.+ +++|+++|+++++++|+||+|..+.++.. .....+++.|+||.++++|+|+ ||++.+
T Consensus 184 NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~ 262 (397)
T d3tata_ 184 NPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVM 262 (397)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCC-BCCEEE
T ss_pred CCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccc-cccccc
Confidence 99999975 67889999999999999999987765421 1135699999999999999997 999877
Q ss_pred hhHHHHH
Q 020548 140 ANLVNSM 146 (324)
Q Consensus 140 ~~~~~~l 146 (324)
..+.+..
T Consensus 263 ~~~~~~~ 269 (397)
T d3tata_ 263 CEDAEAA 269 (397)
T ss_dssp CSSTTHH
T ss_pred hhHHHHH
Confidence 6544433
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.1e-21 Score=168.79 Aligned_cols=262 Identities=12% Similarity=0.130 Sum_probs=189.5
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhh-----cCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV-----QGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~-----~~~~~~v~~~~~~nptG 77 (324)
|...++.++++++|.|++....|.++...+. ..+.++..+...|.+++++.++ .....+|+++++.+..|
T Consensus 117 An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~-----~~~a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G 191 (401)
T d1fc4a_ 117 ANGGLFETLLGAEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDG 191 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----TSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTT
T ss_pred hhHHHHHHhcCCCcEEEeCCcchHHHHcccc-----ccCceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCC
Confidence 4556777889999999999999999887663 2455666666677777777652 13457888899999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|++++.++|++||+++++||+++.....+ ..-.+|++++|++|.++++. ||++.+++++++.++
T Consensus 192 ~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~---Gg~v~g~~~~~~~l~ 268 (401)
T d1fc4a_ 192 VIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS---GGYTAARKEVVEWLR 268 (401)
T ss_dssp EECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS---CEEEEECHHHHHHHH
T ss_pred chhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC---cccccCCHHHHHHHH
Confidence 99999999999999999999999985443221 11158999999999996543 699999999999887
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
....++ .++..+.+..+..+... ....++++++..++.+++.+.+.+.+..+...
T Consensus 269 ~~~~~~--~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~-------------------- 326 (401)
T d1fc4a_ 269 QRSRPY--LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGA-------------------- 326 (401)
T ss_dssp HHCHHH--HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBCCS--------------------
T ss_pred cCChhh--hhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCCccCCC--------------------
Confidence 654422 33444444333332222 22334667788999999999999988754321
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
.++++.+.+.+...+..+.++|.. .|++ .+.+.+|..+. ....+|+++. ...+++
T Consensus 327 ~~pIv~v~~~~~~~a~~~~~~L~~---~Gi~-------v~~i~~PtVp~--------------g~~~lRi~~~-a~hT~e 381 (401)
T d1fc4a_ 327 DHAIIPVMLGDAVVAQKFARELQK---EGIY-------VTGFFYPVVPK--------------GQARIRTQMS-AAHTPE 381 (401)
T ss_dssp SSSEEEEEEECHHHHHHHHHHHHH---TTEE-------CCEECTTSSCT--------------TCEEEEEECC-TTCCHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH---CCce-------EEeECCCCCCC--------------CCceEEEEEC-CCCCHH
Confidence 356888888877778888888874 3442 22333444321 2356999999 999999
Q ss_pred HHHHHHHHHHhhhhc
Q 020548 305 RWSQFEKALSRMQDS 319 (324)
Q Consensus 305 ~~~~l~~~l~~~~~~ 319 (324)
+++.+.++|+++.++
T Consensus 382 dId~~v~al~ev~~~ 396 (401)
T d1fc4a_ 382 QITRAVEAFTRIGKQ 396 (401)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888765
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=9.2e-21 Score=166.73 Aligned_cols=258 Identities=12% Similarity=0.135 Sum_probs=189.1
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc--CCceEEEEecCCCCccccc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~ 80 (324)
|...++.++++++|.|++....|.+.....+ ..+.++..++..|.+++++.++. ++.++|+++.+.+++|.+.
T Consensus 110 an~~~i~al~~~~d~v~~d~~~h~si~~g~~-----~~~~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~ 184 (383)
T d1bs0a_ 110 ANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA 184 (383)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC
T ss_pred hhHHHHHhhcCCCceEEeeccccHHHhhccc-----cCCCcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCccc
Confidence 5667888899999999999999999888773 25677778888899999998843 3567889999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCCCCc--------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~~~~--------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
|+++|.++|++||+++++||+++.....+ .....++++.|++|.+|.+ ||++.++.+..+.++.....
T Consensus 185 pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~----Gg~v~~~~~~~~~l~~~~~~ 260 (383)
T d1bs0a_ 185 PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS----GAAVLCSSTVADYLLQFARH 260 (383)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC----CEEEEECHHHHHHHHHHCHH
T ss_pred chhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccccccccccc----ccccccchhHHHHHHhhchh
Confidence 99999999999999999999984332211 2235788999999999887 59999999999988866543
Q ss_pred hhhccCCCCCHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcce
Q 020548 153 ALMLLGPTMNPKVAFELSERI-----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 227 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 227 (324)
. ..+..+.+..++.+...+ ...+.+.++..++..++.+.|++.++.+. +. .++
T Consensus 261 ~--~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~-~~-------------------~s~ 318 (383)
T d1bs0a_ 261 L--IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLA-DS-------------------CSA 318 (383)
T ss_dssp H--HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEEC-SC-------------------CSS
T ss_pred h--hhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccC-CC-------------------CCC
Confidence 2 223233332222222111 12335556678889999999998887543 22 355
Q ss_pred EEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHH
Q 020548 228 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 307 (324)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~ 307 (324)
++.+.+.+...+..+.+.|.. .|+ +.+.+.+|.++. ....+|++++ ...++++++
T Consensus 319 Ii~v~~g~~~~a~~~~~~L~~---~Gi-------~v~~~~~PtVp~--------------g~~~lRi~~~-a~ht~edid 373 (383)
T d1bs0a_ 319 IQPLIVGDNSRALQLAEKLRQ---QGC-------WVTAIRPPTVPA--------------GTARLRLTLT-AAHEMQDID 373 (383)
T ss_dssp BCCEEEESHHHHHHHHHHHHH---TTE-------ECCEECTTSSCT--------------TCEEECCBCC-TTCCHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHH---CCc-------eEEEEcCCCCCC--------------CCceEEEEeC-CCCCHHHHH
Confidence 777878777778888888874 343 222333454321 2357999999 999999999
Q ss_pred HHHHHHHhh
Q 020548 308 QFEKALSRM 316 (324)
Q Consensus 308 ~l~~~l~~~ 316 (324)
.+.++|+.+
T Consensus 374 ~l~~~L~~~ 382 (383)
T d1bs0a_ 374 RLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.7e-21 Score=172.83 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=129.7
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------CHHHHHHhhh--cCCceEEEEecCCC
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISN 74 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~--~~~~~~v~~~~~~n 74 (324)
+...+..++.+||.|++++|+|+.+...++ ..|.++..++.. +.+++++... .++++++++++|||
T Consensus 106 l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~-----~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~N 180 (394)
T d2ay1a_ 106 QALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHN 180 (394)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCT
T ss_pred HHHHHhhhcCCceEEEEecccccchHHHHH-----HcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCC
Confidence 445555668999999999999999999884 366666666542 4555555442 45677888899999
Q ss_pred CcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCCCcc-----------CCCCcEEEeCCccccccCCCeeEEEEEcCh
Q 020548 75 PTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPA 140 (324)
Q Consensus 75 ptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~~~~-----------~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~ 140 (324)
|||.+++ +++|+++|+++++++|+||+|.++.++.. .....+++.|+||.++.+|+|+ ||++++.
T Consensus 181 PTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~ 259 (394)
T d2ay1a_ 181 PTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCLLALC 259 (394)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccc-cchhhch
Confidence 9999975 77899999999999999999988765421 1135678889999999999997 9998877
Q ss_pred hHHHHHHHhhhh----hhhccCCCCCHHH--HHHHhcCc-------ccHHHHHHHHHHHHHHHHHHHHhCC
Q 020548 141 NLVNSMMDLHQG----ALMLLGPTMNPKV--AFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 198 (324)
Q Consensus 141 ~~~~~l~~~~~~----~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~ 198 (324)
...+........ ........+...+ +....... +.+....+++.++++.+.+.|++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 330 (394)
T d2ay1a_ 260 ADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665554433221 1112223333222 22222211 1233455667888999999998875
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.87 E-value=6.9e-20 Score=160.52 Aligned_cols=258 Identities=13% Similarity=0.156 Sum_probs=183.2
Q ss_pred hHHHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhc---CCceEEEEecCCCCcc
Q 020548 3 AISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~---~~~~~v~~~~~~nptG 77 (324)
|...++.++ ++++|.|+...-.|.+....++ ..+.++..++.+|.+++++.++. .+.++|+++.+.+++|
T Consensus 117 An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~-----ls~a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdG 191 (396)
T d2bwna1 117 ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDG 191 (396)
T ss_dssp HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTC
T ss_pred HHHHHHHHHhcccCCCceeehhhhhhccchhhh-----ccccCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcc
Confidence 344556655 4688999889999988887773 35677777788888888877632 3557888899999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCCCcCCCCc----------cCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 147 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~----------~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~ 147 (324)
.+.|+++|.+++++||+.+++||+++--...+ .....|++++|++|.||.. ||++.+++++.+.++
T Consensus 192 d~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~----Gg~v~~~~~~i~~l~ 267 (396)
T d2bwna1 192 DFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF----GGYIAASARMVDAVR 267 (396)
T ss_dssp CBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC----CEEEEECHHHHHHHH
T ss_pred cccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc----ccccchhHHHHHHHH
Confidence 99999999999999999999999983222111 1124799999999999887 599999999999998
Q ss_pred HhhhhhhhccCCCCCHHHHHHHhcC---c--ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 148 DLHQGALMLLGPTMNPKVAFELSER---I--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
....+. ..++.+.+..++..... . ...+.+.+++..+.+++.+.|.+.++.+. +.
T Consensus 268 ~~~~~~--ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~-~~----------------- 327 (396)
T d2bwna1 268 SYAPGF--IFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPII-DH----------------- 327 (396)
T ss_dssp HHCHHH--HTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CC-----------------
T ss_pred hhcchh--hhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcC-CC-----------------
Confidence 765532 22233333322222211 1 12233445567888999999999887543 22
Q ss_pred CCcceEEEEEeCCHHHHHHHHHH-hhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCC
Q 020548 223 YGFGGLLCLDMETEEKANRLMNY-LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 301 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~-l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~ 301 (324)
.++++.+.+.+...+..+.+. ++. .|+ +...+.+|.++. ....+|+++. ..+
T Consensus 328 --~spIvpv~ig~~~~~~~~a~~lL~e---~Gi-------~v~~i~~PtVp~--------------g~~rlRi~ls-a~h 380 (396)
T d2bwna1 328 --GSHIVPVVIGDPVHTKAVSDMLLSD---YGV-------YVQPINFPTVPR--------------GTERLRFTPS-PVH 380 (396)
T ss_dssp --SSSCEEEECCCHHHHHHHHHHHHHH---HCE-------ECCEECTTTSCT--------------TCCEEEECCC-TTS
T ss_pred --CCCEEEEEeCCHHHHHHHHHHHHHh---CCE-------EEEEECCCcCCC--------------CCeeEEEEeC-ccC
Confidence 356889999887777777776 332 333 223344554432 2367999999 999
Q ss_pred HHHHHHHHHHHHHhh
Q 020548 302 LDQRWSQFEKALSRM 316 (324)
Q Consensus 302 ~~~~~~~l~~~l~~~ 316 (324)
+.++|+.+.++|+.+
T Consensus 381 t~edId~l~~~L~~i 395 (396)
T d2bwna1 381 DLKQIDGLVHAMDLL 395 (396)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.6e-20 Score=166.09 Aligned_cols=268 Identities=14% Similarity=0.182 Sum_probs=174.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
.|+++++.+++.+||++++....+.+........ . .+.....+.. .|.+++++.+.+.++++|++++.+|.|
T Consensus 81 ~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~t 157 (388)
T d1h0ca_ 81 CALEAALVNVLEPGDSFLVGANGIWGQRAVDIGE--R-IGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESST 157 (388)
T ss_dssp HHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHH--H-HC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHHHHHHHhhccCCceeeecccceeeeeccccc--c-ccccccccccCCccccchHHHHHHhccCCcceEEEeeeeecc
Confidence 3678888899999999999999888765544211 1 2333323222 277788777757789999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh--
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-- 152 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-- 152 (324)
|.+.|+++|.++|+++|+++++|+++ +....+..+.++|++++|.+|++++|++- |+++.+++..+.+.....+
T Consensus 158 G~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~--~~~~~~~~~~~~~~~~~~~~~ 235 (388)
T d1h0ca_ 158 GVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGT--SLISFSDKAKKKMYSRKTKPF 235 (388)
T ss_dssp TEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTC--EEEEECHHHHHHHTTCSSCCS
T ss_pred ccccCHHHHHHHhhcccccceeccccccccccccccccccceecccccccccCCCce--EEEeecHHHHHhhhhcccccc
Confidence 99999999999999999999999998 33445566779999999999999887644 7777777777665432110
Q ss_pred -----------------hhhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 153 -----------------ALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 153 -----------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
......+++.......+...+. .++...++..++.+++.+.+.+.+.....+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~----- 310 (388)
T d1h0ca_ 236 SFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKD----- 310 (388)
T ss_dssp CSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCS-----
T ss_pred ccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCC-----
Confidence 0011222333332222221121 1344555567778888888888877444333
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
+......+++|.++...+...+.+.+.. ++|+ .++.|.. ...++
T Consensus 311 ----------~~~rs~~i~~~~~p~~~~~~~~~~~L~~--~~gI-~v~~G~~-----------------------~~~~~ 354 (388)
T d1h0ca_ 311 ----------PALRLPTVTTVAVPAGYDWRDIVSYVID--HFDI-EIMGGLG-----------------------PSTGK 354 (388)
T ss_dssp ----------GGGBCTTEEEEECCTTCCHHHHHHHHHH--HHCE-ECEECCG-----------------------GGTTT
T ss_pred ----------HHHcCCeEEEEECCCCCCHHHHHHHHHh--cCCE-EEeCCch-----------------------hhcCC
Confidence 1112445889999744445566665542 1232 3333311 11247
Q ss_pred eEEEE-eccCCCHHHHHHHHHHHHHhh
Q 020548 291 LVRMS-VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 291 ~iR~s-~g~~~~~~~~~~~l~~~l~~~ 316 (324)
.+|+| +| ..++.++++.+.++|+++
T Consensus 355 ~iRis~~g-~~~t~edid~li~aL~~~ 380 (388)
T d1h0ca_ 355 VLRIGLLG-CNATRENVDRVTEALRAA 380 (388)
T ss_dssp EEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHHH
Confidence 89999 89 777777777777776654
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2.7e-19 Score=157.42 Aligned_cols=276 Identities=16% Similarity=0.160 Sum_probs=167.7
Q ss_pred hHHHHHH----HccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 3 AISSVLM----QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~----~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
|+..++. ....+|+.|++....|+.+...++.. .+ .|.+++.++.+ |++++++++ +++|++|++++++
T Consensus 73 ~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-~~-~g~~v~~vp~~~~~~id~~~l~~~i-~~~t~lv~is~v~ 149 (376)
T d1eg5a_ 73 SINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL-SM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAAN 149 (376)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH-HH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBC
T ss_pred HHHhhhhcccccccccCcccccccccchhhHHHHHHH-Hh-cCCEEEEEcCCCCCeECHHHHHHhc-CCCceEEEEECCc
Confidence 4455544 34678889999999888888777533 33 68999888754 799999999 9999999999999
Q ss_pred CCcccccChHHHHHHHHhc--CCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 74 NPTLAVANIPELSRLAHDK--GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~--~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
|+||...|++++.++++.+ ++++++|+++ +....+..+.++|++++|++||+|++|. |+++.+++. .+++.
T Consensus 150 ~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~---~~l~~~~~~--~~~p~ 224 (376)
T d1eg5a_ 150 NEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGV---GITYIRKGV--PIRPL 224 (376)
T ss_dssp TTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTC---EEEEECTTS--CCCCS
T ss_pred cccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCc---eeEEeccCc--ccCCc
Confidence 9999999999999998655 8999999998 3333455567899999999999988874 444443331 11111
Q ss_pred hhh---hhhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccC
Q 020548 150 HQG---ALMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 222 (324)
Q Consensus 150 ~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (324)
..+ ......+.............. ...............++.+.|.........+...
T Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------- 289 (376)
T d1eg5a_ 225 IHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI--------------- 289 (376)
T ss_dssp BCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS---------------
T ss_pred ccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccc---------------
Confidence 110 000111222222211111111 1122333344666777888887766543322211
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCC----CCeEEEEecc
Q 020548 223 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGY 298 (324)
Q Consensus 223 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iR~s~g~ 298 (324)
....++.+.+++. +...+...+.. .|+ .++.|..+... . ..........|+. ++.||+|++
T Consensus 290 -~~~~~~~~~~~~~-~~~~~~~~L~~---~gI-~vr~G~~c~~~------~--~~~~~~l~~~gi~~~~~~~~iRiS~~- 354 (376)
T d1eg5a_ 290 -SLPNTLSVSFPNI-RGSTLQNLLSG---YGI-YVSTSSACTSK------D--ERLRHVLDAMGVDRRIAQGAIRISLC- 354 (376)
T ss_dssp -BCTTEEEEECTTC-CHHHHHHHHHH---TTE-ECBC--------------------CHHHHTTCCHHHHHHEEEEECC-
T ss_pred -cccceeeeccCCC-CHHHHHHHHhh---CCe-EEeCcchhcCC------c--cchhHHHHHcCCCcccCCCEEEEecC-
Confidence 1344677887632 23333333432 232 44444332110 0 0011112233443 357999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 020548 299 LGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~ 316 (324)
.++++++++.+.++|+++
T Consensus 355 ~ynt~edid~l~~~L~~i 372 (376)
T d1eg5a_ 355 KYNTEEEVDYFLKKIEEI 372 (376)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999876
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=3.1e-18 Score=150.91 Aligned_cols=269 Identities=10% Similarity=0.077 Sum_probs=169.2
Q ss_pred chHHHHHHHcc---CCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC------CCHHHHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~~---~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+++++.+++ +|||+|++....+.+...... ..+ .+.....+.. .+.+.+++.+.+.+++++++++.
T Consensus 68 ~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 144 (382)
T d2bkwa1 68 LGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADC--LRS-YGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHV 144 (382)
T ss_dssp HHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHH--HHH-TTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESE
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhh--ccc-cccccccccccCCCCccchhHHHHHhhhccchheeeeec
Confidence 46788888875 689999999988876543332 112 3444443322 26788887775778999999999
Q ss_pred CCCcccccChHHHHHHHHhc--CCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDK--GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 148 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~--~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~ 148 (324)
+|.||...|++++.+.|+++ ++++++|.++ +....+..++++|++++|.+|++++|.+ .|+++.++++.+.+.+
T Consensus 145 ~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~ 222 (382)
T d2bkwa1 145 DTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALN 222 (382)
T ss_dssp ETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTC
T ss_pred cccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhh
Confidence 99999999999999998876 5999999997 3445566677999999999999954332 4899888887776543
Q ss_pred hhhh----------------------hhhccCCCCCHHHHHHHhcCccc-----HHHHHHHHHHHHHHHHHHHHhCCCce
Q 020548 149 LHQG----------------------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGLKV 201 (324)
Q Consensus 149 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~ 201 (324)
...+ .......++.....+.+...++. .+...+++.+.++++.+.+.+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 302 (382)
T d2bkwa1 223 DSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLT 302 (382)
T ss_dssp HHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred cccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccccc
Confidence 2110 00012234444333333223332 34555666778888888887754311
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHH
Q 020548 202 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 281 (324)
Q Consensus 202 ~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 281 (324)
.....+.. .....++.|.+++..+...++++. |+ .++.|...
T Consensus 303 ~~~~~~~~-------------~~s~~v~~~~~~~~~~~~~~L~~~------gi-~i~~G~~~------------------ 344 (382)
T d2bkwa1 303 SVSRYPSN-------------MSAHGLTAVYVADPPDVIAFLKSH------GV-VIAGGIHK------------------ 344 (382)
T ss_dssp ESSCSSST-------------TBCSSCEEEECSCHHHHHHHHHHT------TE-ECBCCCCT------------------
T ss_pred ccccCchh-------------ccCCcEEEEcCCCHHHHHHHHHHC------Ce-EEECCCCh------------------
Confidence 11111111 013356788888666555554443 32 22323110
Q ss_pred HHhcCCCCCeEEEE-eccCCCHHHHHHHHHHHHHhhhh
Q 020548 282 KALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 282 ~~~~~~~~~~iR~s-~g~~~~~~~~~~~l~~~l~~~~~ 318 (324)
...++.+|+| +| +.++++.++.+.++|+.+.+
T Consensus 345 ----~~~~~~~Ri~~~G-~~~~~e~i~~l~~~l~~i~~ 377 (382)
T d2bkwa1 345 ----DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKL 377 (382)
T ss_dssp ----TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHH
T ss_pred ----hhcCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHH
Confidence 1124689999 99 66556656677777766654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.80 E-value=2.4e-18 Score=154.22 Aligned_cols=262 Identities=11% Similarity=0.059 Sum_probs=164.6
Q ss_pred HHHHHHc--cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhc----CCceEEEEe
Q 020548 5 SSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQ----GRTKVLYFE 70 (324)
Q Consensus 5 ~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~----~~~~~v~~~ 70 (324)
.+++.+. ..++++|+++...|+++...+. ..|.....++. .|+++|++++++ .++.+|+++
T Consensus 144 ~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~-----~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~ 218 (434)
T d2z67a1 144 SLCLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLST 218 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEeccCCHHHHHHHH-----HhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEec
Confidence 3444443 2378999999999999888773 35666666543 389999999843 478889999
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCCCcCC-------CCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 143 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-------~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~ 143 (324)
+|++++|.+.|+++|+++|+++|+++++|++|+... ..+...++|++++|+||+++.|.+. +..++.++++.
T Consensus 219 ~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~-~~~~~~~~~~~ 297 (434)
T d2z67a1 219 LTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG-GLVYSTDAEFI 297 (434)
T ss_dssp SSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSC-EEEEESCHHHH
T ss_pred cCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCCCc-cccccCcHHHH
Confidence 999999999999999999999999999999995432 1245668999999999998876554 24446677777
Q ss_pred HHHHHhhhhhhhccCCCCCHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHhC----CCceeCCCCCCCchhHHHHH
Q 020548 144 NSMMDLHQGALMLLGPTMNPKVAFELS--ERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKS 217 (324)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~p~~~~~~~~~~~~~ 217 (324)
+.+..... ..........++..+ .+...+....++..++++++.+.|++. +..+..+.
T Consensus 298 ~~~~~~~~----~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~------------ 361 (434)
T d2z67a1 298 KEISLSYP----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE------------ 361 (434)
T ss_dssp HHHHTTSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC------------
T ss_pred HHHHhhcc----cccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCC------------
Confidence 77765443 112222222222222 223334556666677788888888764 33332221
Q ss_pred HhccCCCcceEEEEEeC-CHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcC-CCCCeEEEE
Q 020548 218 MANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG-ISAGLVRMS 295 (324)
Q Consensus 218 ~~~~~~~~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iR~s 295 (324)
....+.+.++ +.. ++...|.. .|+.+ .. +..+.... -....+ ...+++|++
T Consensus 362 -------~~~~~~~~~~~~~~---~l~~~L~~---~gI~g---~~----v~~~l~~~-------g~~~~~~~~~~~l~~~ 414 (434)
T d2z67a1 362 -------SPIASCISVNSDPV---EIAAKLYN---LRVTG---PR----GIKKTDHF-------GNCYLGTYTHDYIVMN 414 (434)
T ss_dssp -------CSSEEEEECSSCHH---HHHHHHHH---TTEES---CE----EECTTCHH-------HHTCSSCCSCCEEEEE
T ss_pred -------CCceeeeecCCCHH---HHHHHHHH---cCCee---ee----hhhhcccc-------CeeeecccCCCeEEEe
Confidence 1123344444 333 33333332 12111 00 00111000 000011 235889999
Q ss_pred eccCCCHHHHHHHHHHHHHhh
Q 020548 296 VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 296 ~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++ ..+++++++.+.++|+++
T Consensus 415 ~s-~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 415 AA-IGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp CC-TTCCHHHHHHHHHHHHTC
T ss_pred cC-CCCCHHHHHHHHHHHhcC
Confidence 99 889999999999999864
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.80 E-value=1.1e-18 Score=154.98 Aligned_cols=257 Identities=14% Similarity=0.110 Sum_probs=159.3
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
..+++.|++.+..|++....+.....+.....+......+++.+++++ +++|++|.+++++|.||.+.|+++|+++|++
T Consensus 114 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~ 192 (404)
T d1qz9a_ 114 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTALSHE 192 (404)
T ss_dssp HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHHHHH
T ss_pred cCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhc-CCCceEEEEecccccccceecHHHHhccccc
Confidence 468899898888877765555322222122222222234788889999 9999999999999999999999999999999
Q ss_pred cCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-----------------
Q 020548 92 KGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----------------- 152 (324)
Q Consensus 92 ~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~----------------- 152 (324)
+|+.+++|.++ +.+..+..+.++|+++.|.+|+++++.+. +|+++.++.+.+.+.....+
T Consensus 193 ~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (404)
T d1qz9a_ 193 CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPS 271 (404)
T ss_dssp HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBC
T ss_pred cccceeEEeeccccccccccccccceEEEEechhhcccCCce-EEEEEechhhhhhCCccccccCCcccccccccccccc
Confidence 99999999998 32334445568999999999998665544 37888777665544321110
Q ss_pred --hhhccCCCCCHHHHHHH------hcCc--ccHHHHHHHHHHHHHHHHHHHHhC-CCceeCCCCCCCchhHHHHHHhcc
Q 020548 153 --ALMLLGPTMNPKVAFEL------SERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 153 --~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.......++........ +... ..+..+..........+.+.+... +.++..|..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~-------------- 337 (404)
T d1qz9a_ 272 NGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREH-------------- 337 (404)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSG--------------
T ss_pred ccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCc--------------
Confidence 01112223332221111 1111 112222233333333344444443 4466555421
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC-C
Q 020548 222 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL-G 300 (324)
Q Consensus 222 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~-~ 300 (324)
..++++++|.+++.. .+.+.|.. .|+.+ + . ..++.||+|++ + +
T Consensus 338 -~~r~~~vsf~~~~~~---~v~~~L~~---~gi~~-~---------~------------------r~~~~lRiS~~-h~y 381 (404)
T d1qz9a_ 338 -AKRGSHVSFEHPEGY---AVIQALID---RGVIG-D---------Y------------------REPRIMRFGFT-PLY 381 (404)
T ss_dssp -GGBCSEEEEECTTHH---HHHHHHHT---TTEEC-E---------E------------------ETTTEEEEECC-TTT
T ss_pred -cceeeEEEEecCCHH---HHHHHHHH---CCCEE-e---------e------------------cCCCeEEEECC-CCC
Confidence 136789999987543 45555553 22211 0 0 01478999996 5 7
Q ss_pred CHHHHHHHHHHHHHhhhhcC
Q 020548 301 TLDQRWSQFEKALSRMQDSG 320 (324)
Q Consensus 301 ~~~~~~~~l~~~l~~~~~~~ 320 (324)
|++++++.+.++|+++-++.
T Consensus 382 nt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 382 TTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhC
Confidence 99999999999998875544
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=2.6e-17 Score=143.71 Aligned_cols=264 Identities=14% Similarity=0.083 Sum_probs=158.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
|++.++.++..+++.+++....+............. ........+.. +.+...... .++++++.+++.+|.||
T Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG 141 (361)
T d1m32a_ 64 AVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG-IAHHAYDCGEVARPDVQAIDAILNA-DPTISHIAMVHSETTTG 141 (361)
T ss_dssp HHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT-CCEEEEECCTTSCCCHHHHHHHHHH-CTTCCEEEEESEETTTT
T ss_pred HHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhh-cccccccccccCCccchhhHHHHHh-ccCccceEEEeeecccc
Confidence 678888888888887777766554433222111111 12222222221 233334444 68999999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh---
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--- 152 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~--- 152 (324)
...|+++|.++|+++|+++++|.++ +....+..+.++|++++|.+|++++|.+ .|+++.+++..+...+...+
T Consensus 142 ~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~ 219 (361)
T d1m32a_ 142 MLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSL 219 (361)
T ss_dssp EECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTT
T ss_pred cchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccc
Confidence 9999999999999999999999998 3334566677999999999999976543 38888776655443321110
Q ss_pred -----------hhhccCCCCCHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 153 -----------ALMLLGPTMNPKVAFELSERIPH------LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 153 -----------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
.......++...........+.. .....++.....+.+.+.++..+.....+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~---------- 289 (361)
T d1m32a_ 220 DLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDD---------- 289 (361)
T ss_dssp CHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG----------
T ss_pred cchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCCh----------
Confidence 00111222332222222211111 223344557777888888888876433222
Q ss_pred HHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEE
Q 020548 216 KSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 293 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 293 (324)
......+++|.++. ..+...+.+.+.. .|+ .++.|+ ...++.+|
T Consensus 290 ------~~rs~~v~~~~~p~~~~~~~~~~~~~l~~---~gi-~i~~G~------------------------~~~~~~~R 335 (361)
T d1m32a_ 290 ------ELHSPIITAFYSPEDPQYRFSEFYRRLKE---QGF-VIYPGK------------------------VSQSDCFR 335 (361)
T ss_dssp ------GGBCSSEEEEECCCCTTCCHHHHHHHHHH---TTE-ECEECC------------------------CSSSCEEE
T ss_pred ------hhcCCcEEEEECCCCCCCCHHHHHHHHHH---CCc-EEECCC------------------------cCCCCEEE
Confidence 01134577888762 2345566676664 332 222221 11247899
Q ss_pred EEe-ccCCCHHHHHHHHHHHHHhh
Q 020548 294 MSV-GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 294 ~s~-g~~~~~~~~~~~l~~~l~~~ 316 (324)
+|. | + +++++++.+.++|+.+
T Consensus 336 is~~g-~-~~~~di~~lv~al~~~ 357 (361)
T d1m32a_ 336 IGNIG-E-VYAADITALLTAIRTA 357 (361)
T ss_dssp EECCS-S-CCHHHHHHHHHHHHHH
T ss_pred EeCCC-C-CCHHHHHHHHHHHHHH
Confidence 994 5 3 5566788888888764
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.77 E-value=3.1e-17 Score=144.65 Aligned_cols=271 Identities=14% Similarity=0.168 Sum_probs=167.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
.|++.++.+++.+|+++++....+.+........ + .+.....+.. .+.+..++...+.+++++++++.+|.|
T Consensus 79 ~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~t 155 (388)
T d2ch1a1 79 AGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE--R-YGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSS 155 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH--H-TTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTT
T ss_pred HHHHHHHHHhccccccccccccccccccchhhhh--h-hcccccccccccccccchhhhhhhhccCCcceeeeeeccccc
Confidence 3678888999999999999988776654433211 2 3433333332 256666666656789999999999999
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh-
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA- 153 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~- 153 (324)
|...|++++.++||++|+++++|.++ +....+..++++|++++|.+|++++|++- |+++.+++..+.+.....+.
T Consensus 156 G~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~--g~~~~~~~~~~~~~~~~~~~~ 233 (388)
T d2ch1a1 156 GLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGI--TPISISPKALDVIRNRRTKSK 233 (388)
T ss_dssp TEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSC--EEEEECHHHHHHHHTCSSCCS
T ss_pred ccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeE--EEEeccHHHHHhhhcccCccc
Confidence 99999999999999999999999997 33345666779999999999999776544 78888877777665422110
Q ss_pred ------------------hhccCCCCCHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCc
Q 020548 154 ------------------LMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 210 (324)
Q Consensus 154 ------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~ 210 (324)
......++.......+...+. ....+.++...........+...+.....+. +
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 309 (388)
T d2ch1a1 234 VFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKD----P 309 (388)
T ss_dssp CGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCS----G
T ss_pred cccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCC----H
Confidence 001122333333222222222 1223334444455555566655554332222 0
Q ss_pred hhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCC
Q 020548 211 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 290 (324)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (324)
......+++|.++...+..++...+.. ++|+ .++.|.. ...++
T Consensus 310 -----------~~rs~~v~~~~~p~g~~~~~l~~~l~~--~~gI-~v~~G~~-----------------------~~~~~ 352 (388)
T d2ch1a1 310 -----------RHRLPTVTGIMIPKGVDWWKVSQYAMN--NFSL-EVQGGLG-----------------------PTFGK 352 (388)
T ss_dssp -----------GGBCTTEEEEECCTTCCHHHHHHHHHH--HHCB-CCBCCCG-----------------------GGTTT
T ss_pred -----------HHhCCeEEEEECCCCCCHHHHHHHHhh--cCCE-EEeCCCc-----------------------cccCC
Confidence 012345788999743445556555532 1232 2232211 01246
Q ss_pred eEEEE-eccCCCHHHHHHHHHHHHHhhhhc
Q 020548 291 LVRMS-VGYLGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 291 ~iR~s-~g~~~~~~~~~~~l~~~l~~~~~~ 319 (324)
.+|+| +| ..++.++++.+.++|+.+-+.
T Consensus 353 ~~RIs~~g-~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 353 AWRVGIMG-ECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp EEEEECCG-GGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCc-CCCCHHHHHHHHHHHHHHHHh
Confidence 89999 89 777777777777777666443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.77 E-value=4.1e-17 Score=143.23 Aligned_cols=266 Identities=15% Similarity=0.162 Sum_probs=171.8
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCcc
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTL 77 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~nptG 77 (324)
+++.++..++.+|+++++....+.......... . .+.....+.. .+.+..+....+.+++++.+++.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg 157 (377)
T d1vjoa_ 81 AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG--R-YGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTG 157 (377)
T ss_dssp HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH--H-TTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTT
T ss_pred HHHHHHHhccccccccceeeechhhhhhhhhhh--h-hcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccce
Confidence 577888888999999999988887654333211 2 2333333322 1455555555467899999999999999
Q ss_pred cccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh---
Q 020548 78 AVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--- 152 (324)
Q Consensus 78 ~~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~--- 152 (324)
.+.|++++.++||++|+++++|.++ +....+..+++.|++++|.+|++++|++. |+++.+++.++.......+
T Consensus 158 ~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~--~~~~~~~~~~~~~~~~~~~~~~ 235 (377)
T d1vjoa_ 158 ARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGA--SPFTMSSRAIEKLQRRRTKVAN 235 (377)
T ss_dssp EECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSC--EEEEECHHHHHHHHTCSSCCSC
T ss_pred eeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEE--EEecchhhHHhhhhccCCCCcc
Confidence 9999999999999999999999998 33445666779999999999998776543 7777777777665432210
Q ss_pred -------------hhhccCCCCCHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHH
Q 020548 153 -------------ALMLLGPTMNPKVAFELSE-----RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 214 (324)
Q Consensus 153 -------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~ 214 (324)
......+.+.......+.. .....+...++.+++.+++.+.+.+.+.....+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--------- 306 (377)
T d1vjoa_ 236 WYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK--------- 306 (377)
T ss_dssp STTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG---------
T ss_pred eeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecCh---------
Confidence 0111222223222111111 1122445566678888999999998876443222
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
......+++|.+++..+...+.+.|.. .+|+ .++.|.. ...++.+|+
T Consensus 307 -------~~rs~~v~~~~~p~~~~~~~l~~~L~~--~~gI-~v~~G~~-----------------------~~~~~~~Ri 353 (377)
T d1vjoa_ 307 -------EYRLPTLTTVCIPDGVDGKAVARRLLN--EHNI-EVGGGLG-----------------------ELAGKVWRV 353 (377)
T ss_dssp -------GGBCSSEEEEECCTTCCHHHHHHHHHH--HHCE-ECEECCG-----------------------GGTTTEEEE
T ss_pred -------HhcCCeEEEEECCCCCCHHHHHHHHHh--cCCE-EEecCcc-----------------------cccCCEEEE
Confidence 012455778888643445566665532 1333 2222211 112478999
Q ss_pred E-eccCCCHHHHHHHHHHHHHhh
Q 020548 295 S-VGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 295 s-~g~~~~~~~~~~~l~~~l~~~ 316 (324)
| +| ..++.++++.|.++|+++
T Consensus 354 s~~g-~~~t~edi~~lv~al~~~ 375 (377)
T d1vjoa_ 354 GLMG-FNSRKESVDQLIPALEQV 375 (377)
T ss_dssp ECCG-GGCSHHHHHHHHHHHHHH
T ss_pred ecCc-CCCCHHHHHHHHHHHHHH
Confidence 9 79 777788899999988775
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=2.6e-17 Score=147.78 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=120.4
Q ss_pred cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC--------CCHHHHHHhhhc---CCceEEEEecCCCCccccc
Q 020548 12 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQ---GRTKVLYFESISNPTLAVA 80 (324)
Q Consensus 12 ~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~l~~---~~~~~v~~~~~~nptG~~~ 80 (324)
..++++|+++...|.+....+. ..|.+.+.++. .|+++|++++++ +++.+|++++|+|++|.+.
T Consensus 137 ~~~~~~vi~~~~~H~s~~~a~~-----~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~ 211 (445)
T d3bc8a1 137 RPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD 211 (445)
T ss_dssp CTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC
T ss_pred CCCCCEEEEcCcccHHHHHHHH-----HcCCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeeh
Confidence 4567899999999999988883 36777777653 289999998842 4688999999999999999
Q ss_pred ChHHHHHHHHhcCCEEEEcCCCCcCC-C--Cc----cCC-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh
Q 020548 81 NIPELSRLAHDKGVTVVVDNTFSPLV-L--SP----ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 152 (324)
Q Consensus 81 ~~~~i~~l~~~~~~~~ivD~~~~~~~-~--~~----~~~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~ 152 (324)
|+++|+++|+++|+++++|++++... . .. ... ++|+++.|+||++++|.+. +++++.+.++.+.+.....
T Consensus 212 ~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~-~~l~~~~~~~~~~~~~~~~- 289 (445)
T d3bc8a1 212 RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGG-AIIAGFNEPFIQDISKMYP- 289 (445)
T ss_dssp CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSC-EEEEESCHHHHHHHHHHSC-
T ss_pred hHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCC-ceeeeCChHHHHHHHHHHh-
Confidence 99999999999999999999985432 1 11 112 5899999999988776654 2444566777777655443
Q ss_pred hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 153 ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
..+........+..+. +........+...++++++.+.|++.
T Consensus 290 ---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l 333 (445)
T d3bc8a1 290 ---GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKL 333 (445)
T ss_dssp ---SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 1222212222222221 12223444455566666666666653
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=5.3e-17 Score=142.55 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=139.0
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+..++.++ +++||+|++++.+|.+....+. ..|.+++++|.+ |+++|++++ +++|++|+++ +
T Consensus 57 ~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~-----~~g~~pv~~d~~~~~~~~d~~~l~~~i-~~~tkaIi~~---h 127 (376)
T d1mdoa_ 57 AGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVDRDTLMVTPEHIEAAI-TPQTKAIIPV---H 127 (376)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEECCB---C
T ss_pred HHHHHHHHHhCCCCCCEEEEecccccccccchh-----ccccceeeecccccccCCCHHHHHHhc-CCCCeEEEEe---C
Confidence 4788899988 8999999999999999999884 378888888764 899999999 8899999965 5
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCcc---CCCCcEEEeCCccccccCCCeeEEEEE-cChhHHHHHHHh
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPA---RLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDL 149 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~~---~~~~d~~~~S~sK~~~~~g~r~~G~i~-~~~~~~~~l~~~ 149 (324)
..|...|+++|.++|+++|+++|+|++++.. ..... ..|..+..+..+|.++.++ ||.++ .++++.+.++..
T Consensus 128 ~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~---GG~i~t~~~~l~~~~~~~ 204 (376)
T d1mdoa_ 128 YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAE---GGIVVTDNPQFADKLRSL 204 (376)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSS---CEEEEESCHHHHHHHHHH
T ss_pred CCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCCCCC---CCEEEEechhHHHHHHhh
Confidence 7899999999999999999999999998332 12221 2233333334479887644 57664 566777878766
Q ss_pred hhhhh------------------h--ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 150 HQGAL------------------M--LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 150 ~~~~~------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
..... . .....+....++....++..++..+++..++++++.+.|++.+.
T Consensus 205 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~ 274 (376)
T d1mdoa_ 205 KFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPF 274 (376)
T ss_dssp TBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred cccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhcccccc
Confidence 53100 0 11123555666666666777888888889999999999998765
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.73 E-value=5.4e-16 Score=132.94 Aligned_cols=222 Identities=17% Similarity=0.195 Sum_probs=154.7
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNP 75 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~np 75 (324)
.|...++.++++|||+|+..++..+++...-......-...+...++.+ |.+++++..+..++++|++....+|
T Consensus 96 ~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~ 175 (405)
T d1kl1a_ 96 QANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP 175 (405)
T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc
Confidence 3567788899999999999997776655432111000012333333322 8999999987789999999775554
Q ss_pred cccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHh
Q 020548 76 TLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 76 tG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~ 149 (324)
...|+++++++|++.|+++++|.++ .++ ..+|++. +|++.+|.||+|.||. ||+|..++++.+.+...
T Consensus 176 --r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDvvt~tThKtlrGPr---gg~I~~~~~~~~~i~~a 249 (405)
T d1kl1a_ 176 --RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHFVTTTTHKTLRGPR---GGMILCQEQFAKQIDKA 249 (405)
T ss_dssp --SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSEEEEESSSTTCCCS---CEEEEECHHHHHHHHHH
T ss_pred --cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhheeccccccccCCC---CceEEecchhHHHHHhh
Confidence 6679999999999999999999997 443 4678865 8999999999997765 89999999988888776
Q ss_pred hhhhhhccCCCCCHHHHHH--HhcC-cccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcc
Q 020548 150 HQGALMLLGPTMNPKVAFE--LSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFG 226 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 226 (324)
.. .+...++.+...++.+ +.+. ......+.++..+|++.|.+.|.+.|+++..-. + ..
T Consensus 250 vf-Pg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~gg---T---------------d~ 310 (405)
T d1kl1a_ 250 IF-PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGG---T---------------DN 310 (405)
T ss_dssp HT-TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---C---------------SS
T ss_pred hC-cccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCC---C---------------cc
Confidence 54 2223333333333222 1111 234567888889999999999999999776322 1 23
Q ss_pred eEEEEEeC----CHHHHHHHHHHhhc
Q 020548 227 GLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 227 ~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
.++++.+. +...+.+.+++..+
T Consensus 311 H~vlvdl~~~~~~g~~ae~~Le~agI 336 (405)
T d1kl1a_ 311 HLLLVDLRPQQLTGKTAEKVLDEVGI 336 (405)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHHTE
T ss_pred ceeeccccccCCcHHHHHHHHHHcCe
Confidence 37888875 44555666666554
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=8.9e-16 Score=132.25 Aligned_cols=222 Identities=18% Similarity=0.148 Sum_probs=153.0
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPT 76 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~npt 76 (324)
.|...++.++++|||+|+..+..++++...-......-...+...++. -|.+++++.....++|+|++....+
T Consensus 99 ~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y-- 176 (416)
T d1dfoa_ 99 QANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAY-- 176 (416)
T ss_dssp HHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSC--
T ss_pred cHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEeccccc--
Confidence 366788889999999999999888776543311000001122223322 2899999988778999999986544
Q ss_pred ccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcC---hhHHHHHH
Q 020548 77 LAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGP---ANLVNSMM 147 (324)
Q Consensus 77 G~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~---~~~~~~l~ 147 (324)
....|+++++++|++.|+++++|.++ +++ ..+|+.. +|++.+|+||+|.||. ||+++.+ +++.+++.
T Consensus 177 ~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlrGPr---ggiI~~~~~~~~~~~~i~ 252 (416)
T d1dfoa_ 177 SGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLAGPR---GGLILAKGGSEELYKKLN 252 (416)
T ss_dssp CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTCCCS---CEEEEESSCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhhcccCCC---ceEEEeccchHhHHHHHH
Confidence 47789999999999999999999998 444 4678876 6999999999997765 7999875 46777776
Q ss_pred HhhhhhhhccCCCCCHHHHHH--HhcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 148 DLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
.... .+...++.+...++.+ +.+.. ..+..+.++..+|++.|.+.|.+.|+++.....
T Consensus 253 ~avf-Pg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggT------------------ 313 (416)
T d1dfoa_ 253 SAVF-PGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT------------------ 313 (416)
T ss_dssp HHHT-TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC------------------
T ss_pred hhhC-cccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCC------------------
Confidence 5543 2223333333333222 22222 345678888899999999999999997764321
Q ss_pred cceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 225 FGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 225 ~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
...++.+.+. ++..+...+++..+
T Consensus 314 dnHlvlvdl~~~~~~G~~a~~~Le~~gI 341 (416)
T d1dfoa_ 314 DNHLFLVDLVDKNLTGKEADAALGRANI 341 (416)
T ss_dssp SSSEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred CCceeEEEecccCCCHHHHHHHHHHcCe
Confidence 2337788875 34556666666554
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.67 E-value=3.4e-15 Score=134.01 Aligned_cols=249 Identities=11% Similarity=0.076 Sum_probs=163.6
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccChHHHH
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELS 86 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~ 86 (324)
.|++++..|.+....+ .+.|+.+..++.+ |+++|++++++. .+-+|+.+..++.+|.+.|+++|+
T Consensus 184 vv~~s~~~H~Si~ka~-----~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~ 258 (476)
T d1js3a_ 184 VAYASDQAHSSVERAG-----LIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVG 258 (476)
T ss_dssp EEEEETTCCHHHHHHH-----HHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred EEEecccccHHHHHHH-----HhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHH
Confidence 5888889999998888 3467777777764 899999998421 245677788999999999999999
Q ss_pred HHHHhcCCEEEEcCCCCcCCC-Cc-cC-----C-CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHH--------hh
Q 020548 87 RLAHDKGVTVVVDNTFSPLVL-SP-AR-----L-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--------LH 150 (324)
Q Consensus 87 ~l~~~~~~~~ivD~~~~~~~~-~~-~~-----~-~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~--------~~ 150 (324)
++|+++|++++||.+|+++.. .+ .. . .+|.+..++||+++.|... +.+++.++........ ..
T Consensus 259 ~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~-g~~l~r~~~~~~~~~~~~~~~~~~~~ 337 (476)
T d1js3a_ 259 PICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC-SAMWVKRRTDLTGAFKLDPVYLKHSH 337 (476)
T ss_dssp HHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESCHHHHHGGGC----------
T ss_pred HHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcc-eeecccchHHHHHHHhcChhhhcccc
Confidence 999999999999999966532 11 11 1 5899999999999888766 3555665543322110 00
Q ss_pred hh---------hhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHH
Q 020548 151 QG---------ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 151 ~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~ 218 (324)
.. .+..++-....+..+..+. +...+.+.+++..+.++++.+.|++.+. ++..|.
T Consensus 338 ~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p------------- 404 (476)
T d1js3a_ 338 QGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV------------- 404 (476)
T ss_dssp --CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------
T ss_pred ccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC-------------
Confidence 00 0011122233444444333 3345778888889999999999999865 665443
Q ss_pred hccCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 219 ANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
.-++++|++.+ ....+++.+++.. .|. . .+.+... . +...+|++++
T Consensus 405 ------~l~iV~Fr~~~~d~~n~~l~~~l~~---~G~-------~---~~s~t~~-------------~-g~~~lR~~i~ 451 (476)
T d1js3a_ 405 ------TLGLVCFRLKGSDGLNEALLERINS---ARK-------I---HLVPCRL-------------R-GQFVLRFAIC 451 (476)
T ss_dssp ------CSSEEEEEESSCHHHHHHHHHHHHH---HTS-------C---BCEEEEE-------------T-TEEEEEEECC
T ss_pred ------ceEEEEEEccCChHHHHHHHHHHHh---cCC-------E---EEeeeeE-------------C-CEEEEEEEeC
Confidence 34588999873 3344667777663 221 0 0011110 0 1237999998
Q ss_pred cCC-CHHHHHHHHHHHHHhhhh
Q 020548 298 YLG-TLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 298 ~~~-~~~~~~~~l~~~l~~~~~ 318 (324)
.. ++++.++.+.+.++++.+
T Consensus 452 -n~~Tt~~did~~~~~i~~~a~ 472 (476)
T d1js3a_ 452 -SRKVESGHVRLAWEHIRGLAA 472 (476)
T ss_dssp -CTTCCHHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHH
Confidence 54 566677777777777654
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.67 E-value=3e-15 Score=134.78 Aligned_cols=189 Identities=12% Similarity=0.014 Sum_probs=114.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-------------CHHH---------HHHhhh
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------DHEM---------VNSAIV 60 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-------------d~~~---------l~~~l~ 60 (324)
++.+++.++++|||+|+++..+|.+....+..+. . .+..+.+.+.+ +.+. ++++.
T Consensus 94 ~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (462)
T d1c4ka2 94 ANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMA-G-GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAK- 170 (462)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTT-C-CEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHT-
T ss_pred HHHHHHHHhcCCCCeEEecccchHHHHHHHHHHh-c-CCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhh-
Confidence 4556677889999999999999999887663221 1 22333222211 2222 22333
Q ss_pred cCCceEEEEecCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcCCCCc--------------cCCCCcEEEeCCcccc
Q 020548 61 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP--------------ARLGADVVVHSISKFI 125 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~~~~~--------------~~~~~d~~~~S~sK~~ 125 (324)
..++..+++.+.+|..|.+.|+++|+++|+++|+++++|+++ .++...+ ...++|++++|+||++
T Consensus 171 ~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~l 250 (462)
T d1c4ka2 171 WKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ 250 (462)
T ss_dssp CSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS
T ss_pred ccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccc
Confidence 455666777777788999999999999999999999999998 3332211 1224699999999999
Q ss_pred ccCCCeeEEEEEcChhHH---------HHHHHhhhhhhhccCCCCCHHHHH-H-H-h--cCcccHHHHHHHHHHHHHHHH
Q 020548 126 SGGADIIAGAVCGPANLV---------NSMMDLHQGALMLLGPTMNPKVAF-E-L-S--ERIPHLGLRMKEHCHRALIFA 191 (324)
Q Consensus 126 ~~~g~r~~G~i~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~-~-~-~--~~~~~~~~~~~~~~~~~~~l~ 191 (324)
++++.. +++..+.+.. +.++.... ....++++....+ + . . .......+..++..+++++++
T Consensus 251 g~~~~g--~ll~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r 325 (462)
T d1c4ka2 251 AGFSQT--SQIHKKDSHIKGQLRYCDHKHFNNSFN---LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEAR 325 (462)
T ss_dssp SCCTTC--EEEEEECGGGTTSTTCCCHHHHHHHHH---HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccce--EEEEeccccccccchhhhHHHHHHhhh---hcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 876522 4444333222 22222221 1222333322111 1 1 1 111223345566788899999
Q ss_pred HHHHhCCC
Q 020548 192 RRMKKLGL 199 (324)
Q Consensus 192 ~~L~~~~~ 199 (324)
+.+++.+.
T Consensus 326 ~~l~~~~~ 333 (462)
T d1c4ka2 326 KKLIKAGS 333 (462)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 99998754
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.65 E-value=8.5e-15 Score=130.96 Aligned_cols=195 Identities=12% Similarity=0.031 Sum_probs=122.9
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---------------CCHHHHHHhhhc---CC
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQ---GR 63 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---------------~d~~~l~~~l~~---~~ 63 (324)
+|+..+++++++|||+|+.....+. +...+. . .|.....+.. .|+++|++.+.. .+
T Consensus 101 ~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~~i~----~-~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~ 174 (456)
T d1c7ga_ 101 GAENLLSQLAIKPGQYVAGNMYFTT-TRFHQE----K-NGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAEN 174 (456)
T ss_dssp HHHHHHHHHHCCTTEEEEESSCCHH-HHHHHH----H-TTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhcCCCCeEecCcchHH-HHHHHH----H-cCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCcc
Confidence 4778888999999999987766443 333332 1 3444433221 289999998842 34
Q ss_pred ceEEEEecCCCCccc-cc---ChHHHHHHHHhcCCEEEEcCCC-CcC---C------C---CccC------CCCcEEEeC
Q 020548 64 TKVLYFESISNPTLA-VA---NIPELSRLAHDKGVTVVVDNTF-SPL---V------L---SPAR------LGADVVVHS 120 (324)
Q Consensus 64 ~~~v~~~~~~nptG~-~~---~~~~i~~l~~~~~~~~ivD~~~-~~~---~------~---~~~~------~~~d~~~~S 120 (324)
+.++++++++|+.|- +. ++++|.++|++||+.+++|+++ .+. . + +..+ ..+|++.+|
T Consensus 175 ~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s 254 (456)
T d1c7ga_ 175 IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEE
T ss_pred ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEe
Confidence 678999999998763 33 5788999999999999999996 211 0 0 0100 137999999
Q ss_pred CccccccCCCeeEEEEEc-ChhHHHHHHHhhhhhhh-ccCCCCCHHHHHHHhcCccc--HHHHHHHHHHHHHHHHHHHHh
Q 020548 121 ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM-LLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKK 196 (324)
Q Consensus 121 ~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~ 196 (324)
++|.++++. ||+++. ++++.+.++........ ...+.+....+..+...+.. -.+..++..++.++|.+.|++
T Consensus 255 ~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~ 331 (456)
T d1c7ga_ 255 GKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLRE 331 (456)
T ss_dssp TTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 999998765 688865 56677777655431100 11122332222222111111 123455557778999999999
Q ss_pred CCCceeCCC
Q 020548 197 LGLKVLYPG 205 (324)
Q Consensus 197 ~~~~~~~p~ 205 (324)
.+..+..|.
T Consensus 332 ~g~~vv~p~ 340 (456)
T d1c7ga_ 332 AGVPIVEPT 340 (456)
T ss_dssp TTCCBCSSC
T ss_pred ccCCcccCC
Confidence 988665454
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.63 E-value=3.2e-14 Score=124.80 Aligned_cols=223 Identities=19% Similarity=0.217 Sum_probs=156.2
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 74 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~n 74 (324)
+|+.++++++ +++||+|++++.+|.++...+. ..|.+++++|.+ |++.+++.+ ++++++|+ +.+
T Consensus 60 ~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~-----~~g~~p~~~d~~~~~~~~d~~~~~~~i-~~~tk~i~---~~~ 130 (384)
T d1b9ha_ 60 HALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDVDAATYNLDPEAVAAAV-TPRTKVIM---PVH 130 (384)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEEC---CBC
T ss_pred HHHHHHHHHcCCCCCCEEEEecccccccccccc-----ccccccccccccccccccchhhhcccc-cccccccc---ccc
Confidence 5788889887 7999999999999999988773 378888888864 899999998 88999987 457
Q ss_pred CcccccChHHHHHHHHhcCCEEEEcCCCCcCC-CC--ccCCCCcEEEeCC--ccccccCCCeeEEEE-EcChhHHHHHHH
Q 020548 75 PTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LS--PARLGADVVVHSI--SKFISGGADIIAGAV-CGPANLVNSMMD 148 (324)
Q Consensus 75 ptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~~-~~--~~~~~~d~~~~S~--sK~~~~~g~r~~G~i-~~~~~~~~~l~~ 148 (324)
..|...+++++.++|+++++++|+|.+++... .. +.....|+.++|| +|.++.++ ||++ +.++++.+.++.
T Consensus 131 ~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~---GG~i~t~~~~~~~~~~~ 207 (384)
T d1b9ha_ 131 MAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE---GGAVVFPDGETEKYETA 207 (384)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS---CEEEEECTTCHHHHHHH
T ss_pred ccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccccc---cchhhhhhHHHHHHHHH
Confidence 88999999999999999999999999983322 22 1111235555555 89886544 5766 556778888776
Q ss_pred hhhhh-h----------hccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHH
Q 020548 149 LHQGA-L----------MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 215 (324)
Q Consensus 149 ~~~~~-~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~ 215 (324)
..... . ...| ..++...|+..+.++..+++.+++.+++++.+.+.|++.+.....+. ....
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~-~~~~----- 281 (384)
T d1b9ha_ 208 FLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGG-DVRA----- 281 (384)
T ss_dssp HHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCC-CTTC-----
T ss_pred HHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccccccc-cccc-----
Confidence 65420 0 0112 22666777777777888888888889999999999998754211111 1000
Q ss_pred HHHhccCCCcceEEEEEeC--CHHHHHHHHHHhhc
Q 020548 216 KSMANKEYGFGGLLCLDME--TEEKANRLMNYLQN 248 (324)
Q Consensus 216 ~~~~~~~~~~g~~~~~~l~--~~~~~~~~~~~l~~ 248 (324)
......++.+.++ .......|++.|..
T Consensus 282 ------~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~ 310 (384)
T d1b9ha_ 282 ------DRNSHYMAMFRIPGLTEERRNALVDRLVE 310 (384)
T ss_dssp ------CBCCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ------cccccccccceecccccccHHHHHHHHHH
Confidence 0012234556665 44455678888875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.62 E-value=2.2e-14 Score=124.90 Aligned_cols=222 Identities=14% Similarity=0.151 Sum_probs=141.6
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhh--hcC-cccce--eEEEecC------CCHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTH--FFP-RACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~--~~~-~~~g~--~~~~~~~------~d~~~l~~~l~~~~~~~v~~~ 70 (324)
.|...++.++++|||+|+..++..+++...-.. ..+ ...|. +...+.. -|.+++++.....++++|++.
T Consensus 104 ~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G 183 (463)
T d2a7va1 104 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 183 (463)
T ss_dssp HHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEec
Confidence 366778889999999999999887776543210 000 00111 1222211 189999998877899999998
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---- 140 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---- 140 (324)
...+| ...|+++++++|++.|+++++|.++ +++ ..+|++. +|++.+|+||+|.||- ||+|..++
T Consensus 184 ~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlrGPr---gGiIl~~~~~~~ 257 (463)
T d2a7va1 184 TSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKA 257 (463)
T ss_dssp CSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCSCS---CEEEEEECSEEE
T ss_pred ccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhcCCC---ceEEEEcccccc
Confidence 76554 6679999999999999999999997 443 5678876 7999999999997665 79997765
Q ss_pred -----------hHHHHHHHhhhhhhhccCCCCCHHHHHHH--hcCc-ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 141 -----------NLVNSMMDLHQGALMLLGPTMNPKVAFEL--SERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 141 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++.+.+..... .+...++.+...++.+. .+.. .....+.++..+|++.|.+.|.+.|+++.....
T Consensus 258 ~~~~~~~~~~~~~~~~i~~avF-Pg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggT 336 (463)
T d2a7va1 258 VDPKTGREIPYTFEDRINFAVF-PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT 336 (463)
T ss_dssp EETTTEEEEECCCHHHHHHHHT-TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred cccccCccchhHHHHHhhhhcC-cccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCC
Confidence 56777766543 22233333333332221 1112 236678888899999999999999997764331
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
...++.+.+. +...++..++...+
T Consensus 337 ------------------dnHlvlvdl~~~~~~G~~ae~~Le~~gI 364 (463)
T d2a7va1 337 ------------------DNHLVLVDLRPKGLDGARAERVLELVSI 364 (463)
T ss_dssp ------------------SSSEEEEECTTTTCCHHHHHHHHHHTTE
T ss_pred ------------------CCceeeeeccccCCCHHHHHHHHHhccC
Confidence 2337788875 34556666666664
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.62 E-value=7.2e-14 Score=122.07 Aligned_cols=222 Identities=16% Similarity=0.166 Sum_probs=151.2
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcC-cc----cceeEEEecCC------CHHHHHHhhhcCCceEEEEe
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP-RA----CNITTTFVDIS------DHEMVNSAIVQGRTKVLYFE 70 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~-~~----~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~ 70 (324)
.|...++.++++|||+|+..+...+++...-..... .. ...+...++.+ |.+++++.....++++|++.
T Consensus 108 ~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G 187 (470)
T d1rv3a_ 108 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAG 187 (470)
T ss_dssp HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC
T ss_pred cHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeec
Confidence 366778889999999999998776665432200000 00 01223333221 88999998867899999998
Q ss_pred cCCCCcccccChHHHHHHHHhcCCEEEEcCCC-CcC-----CCCccCCCCcEEEeCCccccccCCCeeEEEEEcCh----
Q 020548 71 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---- 140 (324)
Q Consensus 71 ~~~nptG~~~~~~~i~~l~~~~~~~~ivD~~~-~~~-----~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~---- 140 (324)
...+| ...|+++++++|++.|+++++|.++ +++ ..+|++. +|++++|+||+|.||- ||+|..++
T Consensus 188 ~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-aDvvt~tTHKtlrGPr---gGiI~~~~~~~~ 261 (470)
T d1rv3a_ 188 TSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-CHVVTTTTHKTLRGCR---AGMIFYRRGVRS 261 (470)
T ss_dssp CSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-CSEEEEESSGGGCCCS---CEEEEEECSBCC
T ss_pred hhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-eeeeeeehhhhccCCc---ceEEEEcccccc
Confidence 76555 6779999999999999999999998 444 5688875 6999999999997665 79997654
Q ss_pred -----------hHHHHHHHhhhhhhhccCCCCCHHHHHH--Hhc-CcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 141 -----------NLVNSMMDLHQGALMLLGPTMNPKVAFE--LSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 141 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++.+.+..... .+...++.+...++.+ +.+ .......+.++..+|++.|.+.|.+.|+++..-..
T Consensus 262 ~~~~~~~~~~~~~~~~i~~avF-Pg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggT 340 (470)
T d1rv3a_ 262 VDPKTGKEILYNLESLINSAVF-PGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGS 340 (470)
T ss_dssp -------CCBCCHHHHHHHHHT-TTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ccccccchhHHHHHHHHhhhcC-ccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceeccCCC
Confidence 36666765543 1223333333333322 111 12246678888899999999999999997753331
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeC----CHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~~~~~~~~l~~ 248 (324)
...++.+.+. ++..+++.+++..+
T Consensus 341 ------------------dnHlvlvdl~~~g~~g~~ae~~Le~~gI 368 (470)
T d1rv3a_ 341 ------------------DNHLILVDLRSKGTDGGRAEKVLEACSI 368 (470)
T ss_dssp ------------------SSSEEEEEGGGGTCCHHHHHHHHHHTTE
T ss_pred ------------------CCceEEEeecccCCcHHHHHHHHHHcCc
Confidence 2337777775 45567777777664
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.6e-14 Score=128.88 Aligned_cols=256 Identities=13% Similarity=0.056 Sum_probs=160.5
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 89 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 89 (324)
..++++...|.+....+ +++|++++.++.+ |++++++++ +++|.+|+.+..+|.||.+.|+++|.++|
T Consensus 152 ~~~~~~~~~H~s~~Kaa-----~~~gi~~~~v~~~~~~~~~d~~~L~~~i-~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~ 225 (450)
T d1pmma_ 152 KPNLVCGPVQICWHKFA-----RYWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDAL 225 (450)
T ss_dssp CCEEEESSCCHHHHHHH-----HHTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHH
T ss_pred CceEEecccHHHHHHHH-----HHcCCCceEeeecCCCCcCcHHHHHHHh-hhCceEEEeeeeeccCCCccccchhhHHH
Confidence 35778888888887777 3478888887753 899999999 88999999999999999999988777764
Q ss_pred ------HhcCCEEEEcCCCCcCC--C-Cc-cC-----CCCcEEEeCCccccccCCCeeEEEEEc-ChhHHHHHHHhh---
Q 020548 90 ------HDKGVTVVVDNTFSPLV--L-SP-AR-----LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLH--- 150 (324)
Q Consensus 90 ------~~~~~~~ivD~~~~~~~--~-~~-~~-----~~~d~~~~S~sK~~~~~g~r~~G~i~~-~~~~~~~l~~~~--- 150 (324)
+++|++++||++|+++. + .+ .. .++|.+..|.||++++|-+. |+++. +++.........
T Consensus 226 ~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~--g~l~~r~~~~~~~~~~~~~~y 303 (450)
T d1pmma_ 226 DKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGC--GWVIWRDEEALPQELVFNVDY 303 (450)
T ss_dssp HHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC--EEEEESSGGGSCGGGCEEEEE
T ss_pred HHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCe--eEEEecChhhhhhhcccccCc
Confidence 66899999999995542 1 11 11 16999999999998766444 66654 444332221110
Q ss_pred -hh---hhhccCCCCCHHH--HHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhcc
Q 020548 151 -QG---ALMLLGPTMNPKV--AFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANK 221 (324)
Q Consensus 151 -~~---~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~ 221 (324)
.+ ..+..++...... .+..+. +...+.+..++..++++++.+.|++.+. ++..|.-+.
T Consensus 304 l~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~------------- 370 (450)
T d1pmma_ 304 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD------------- 370 (450)
T ss_dssp TTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTT-------------
T ss_pred CCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCC-------------
Confidence 00 0111222222222 222222 3344667778889999999999999875 555443111
Q ss_pred CCCcceEEEEEeCC----HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEec
Q 020548 222 EYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 297 (324)
Q Consensus 222 ~~~~g~~~~~~l~~----~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g 297 (324)
.+-++++|++.+ ..+...+.+.|+. .|.+. .....|.. ......+|+++.
T Consensus 371 --~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~---~Gw~v-------~~~~~p~~--------------~~~~~~lRvvv~ 424 (450)
T d1pmma_ 371 --EGIPAVCFKLKDGEDPGYTLYDLSERLRL---RGWQV-------PAFTLGGE--------------ATDIVVMRIMCR 424 (450)
T ss_dssp --TBSSEEEEEECTTCCCSSCHHHHHHHHHT---TTCBC-------CEEECCTT--------------CTTCEEEEEECC
T ss_pred --CceEEEEEecCCcccCCCCHHHHHHHHHH---cCCee-------eccCcCCC--------------cCCcEEEEEEcc
Confidence 235578999862 2234556666664 23210 00111110 112357999998
Q ss_pred cCCCHHHH----HHHHHHHHHhhhhc
Q 020548 298 YLGTLDQR----WSQFEKALSRMQDS 319 (324)
Q Consensus 298 ~~~~~~~~----~~~l~~~l~~~~~~ 319 (324)
...+.++ +++|+++++.+.+.
T Consensus 425 -~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 425 -RGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 7655554 45555666665544
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=6.3e-14 Score=121.01 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=136.3
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC--CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--DHEMVNSAIVQGRTKVLYFESISNPTLAV 79 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~--d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 79 (324)
.|+++++.+++++||+|++....+.+.. +.....+ .+..+..++.+ +....+. ..+.+++.|++++..+.||..
T Consensus 61 ~a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~-~~~~~~~~~~~~g~~~~~~~-~~~~~~~~v~~~h~eTstG~~ 136 (348)
T d1iuga_ 61 LAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALE-AGLVVERLDYPYGDTPRPED-VAKEGYAGLLLVHSETSTGAL 136 (348)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHH-TTCEEEEEECCTTCCCCTTT-SCCSSCSEEEEESEETTTTEE
T ss_pred HHHHHHHHhcccccccceeecchHHHHH--HHHHHHh-cCcccccccccCCCcccccc-ccccCCCeeEEEecchhhhhh
Confidence 3678888899999999999888754432 2223333 56555554432 1111122 226788999999999999999
Q ss_pred cChHHHHHHHHhcC--CEEEEcCCCC--cCCCCccCCCCcEEEeCCcccc-ccCCCeeEEEEEcChhHHHHHHH------
Q 020548 80 ANIPELSRLAHDKG--VTVVVDNTFS--PLVLSPARLGADVVVHSISKFI-SGGADIIAGAVCGPANLVNSMMD------ 148 (324)
Q Consensus 80 ~~~~~i~~l~~~~~--~~~ivD~~~~--~~~~~~~~~~~d~~~~S~sK~~-~~~g~r~~G~i~~~~~~~~~l~~------ 148 (324)
.|+++|.++|++++ .++++|.+++ ....+...+++|++++|.+|++ |+|| .|+++.+++.++.+++
T Consensus 137 ~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG---~~~v~~s~~~le~~~~~~~~~d 213 (348)
T d1iuga_ 137 ADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG---LGFVALSPRALERLKPRGYYLD 213 (348)
T ss_dssp CCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC---EEEEEECHHHHHTCCCCSSTTC
T ss_pred ccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCc---eeeeeechHHHhhhcccccccc
Confidence 99999999999874 7899999862 2334555668999999999999 5555 4888887776664422
Q ss_pred ---hhhhh-hhccCCCCCHHHHHHHhcCc----ccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhc
Q 020548 149 ---LHQGA-LMLLGPTMNPKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 149 ---~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (324)
..... ......++.....+.+...+ ....++.++.+.....+.+.++..+.... |..
T Consensus 214 l~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~-~~~-------------- 278 (348)
T d1iuga_ 214 LARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGGLRPV-PKR-------------- 278 (348)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCEES-CSS--------------
T ss_pred hhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhccC-hhh--------------
Confidence 10000 00122344433322222222 22333444444445555666666676543 331
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 221 KEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.+..+++|.++...+...+.+.++.
T Consensus 279 ---~s~~v~~~~~P~g~~~~~~~~~l~~ 303 (348)
T d1iuga_ 279 ---FSPAVAAFYLPEGVPYARVKEAFAQ 303 (348)
T ss_dssp ---BCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred ---cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 1234788999754455667777764
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-14 Score=127.17 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=123.1
Q ss_pred EEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCC
Q 020548 44 TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARL 112 (324)
Q Consensus 44 ~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~ 112 (324)
+..++.+|++++++.+.++++.+|++++.+...|...+ +++|.++|+++|+++|+||++.+|... -...
T Consensus 169 ~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv 248 (404)
T d2byla1 169 FDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV 248 (404)
T ss_dssp EEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred eeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCC
Confidence 45667789999999996678999999998888887754 889999999999999999999776321 1233
Q ss_pred CCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHH
Q 020548 113 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIF 190 (324)
Q Consensus 113 ~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 190 (324)
.+|+++ ++|.+++...++ |.++.++++++.+.+... .. ..++ .+..++.+...++.++ ...++..+..+++
T Consensus 249 ~PDi~~--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~-~~-T~~g--npl~~aaa~a~L~~i~~~~l~~~~~~~g~~l 321 (404)
T d2byla1 249 RPDIVL--LGKALSGGLYPV-SAVLCDDDIMLTIKPGEH-FS-TYGG--NPLGCRVAIAALEVLEEENLAENADKLGIIL 321 (404)
T ss_dssp CCSEEE--ECGGGGTTSSCC-EEEEECHHHHTTSCTTSS-CC-SSTT--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCEEE--ECchhhCCCccc-eeeeechhhhhccCCCCC-Cc-CCCc--CHHHHHHHHHHHHHHHhcCchhhhhHhhHHH
Confidence 578886 999998855787 999999888877755433 11 2222 2333333333333332 3445556677788
Q ss_pred HHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCC--HHHHHHHHHHhhc
Q 020548 191 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN 248 (324)
Q Consensus 191 ~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~~~l~~ 248 (324)
.+.|+++..... . +..|.|.+..+.+.+ .....++..++..
T Consensus 322 ~~~l~~l~~~~i--~---------------~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~ 364 (404)
T d2byla1 322 RNELMKLPSDVV--T---------------AVRGKGLLNAIVIKETKDWDAWKVCLRLRD 364 (404)
T ss_dssp HHHHHTSCTTTE--E---------------EEEEETTEEEEEECCCSSCCHHHHHHHHHH
T ss_pred HHHHHhhccccc--e---------------eeeecccEEEEEEecCCchhHHHHHHHHHh
Confidence 888887643211 0 122578888888862 2345566666653
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1e-14 Score=125.29 Aligned_cols=259 Identities=16% Similarity=0.112 Sum_probs=152.4
Q ss_pred chHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC----CCHHHHHHhhhc-----CCceEEEE-ec
Q 020548 2 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQ-----GRTKVLYF-ES 71 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~l~~-----~~~~~v~~-~~ 71 (324)
+|+..++++++++||.+++..+.|..+......... .+..+..++. .|++.+++.+.. .++..+++ ..
T Consensus 60 ~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 137 (343)
T d1m6sa_ 60 MGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVL--SGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENT 137 (343)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHH--TCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESS
T ss_pred HHHHHHHHHHhccCCceeccccccceeeeccccccc--ccceeeccccccCccCHHHHHHhhhhhhcccccccccccccc
Confidence 467888889999999999999988765432211100 2233333322 288888888721 23455555 45
Q ss_pred CCCCcccccC---hHHHHHHHHhcCCEEEEcCCCCcCCC-----CccC--CCCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 72 ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR--LGADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 72 ~~nptG~~~~---~~~i~~l~~~~~~~~ivD~~~~~~~~-----~~~~--~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
++|+.|.+.+ +++|.++|+++|+++++|+++..+.. .... ...+..+.+.+|..++ .. +|++....+
T Consensus 138 ~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~-~~~~~~~~~ 214 (343)
T d1m6sa_ 138 HNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCA--PV-GSVVVGDRD 214 (343)
T ss_dssp BTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCC--SS-CEEEEECHH
T ss_pred cccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccc--cc-cccccccHH
Confidence 7788887765 56778888999999999999843321 1111 1344555555555433 33 488888888
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhc
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 220 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~ 220 (324)
............ ..+.......++...........+.+...++..++.+.+.+.+. ....|.
T Consensus 215 ~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 277 (343)
T d1m6sa_ 215 FIERARKARKML--GGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV--------------- 277 (343)
T ss_dssp HHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGC---------------
T ss_pred HHhhhHhhCccc--ccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCC---------------
Confidence 777776655411 22223333222222111111112333445566666666666554 222222
Q ss_pred cCCCcceEEEEEeCC-HHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 221 KEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 221 ~~~~~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.++++++.+++ .....+|.+.|.. .|++. .| ..++.+|++++ .
T Consensus 278 ----~~~~v~~~~~~~~~~a~~l~~~L~~---~Gi~v-----------~~-----------------~~~~~iRi~~~-~ 321 (343)
T d1m6sa_ 278 ----KTNMVILRTDNLKVNAHGFIEALRN---SGVLA-----------NA-----------------VSDTEIRLVTH-K 321 (343)
T ss_dssp ----CSSEEEEECTTSSSCHHHHHHHHHH---HTEEC-----------EE-----------------EETTEEEEECC-T
T ss_pred ----CceEEEEEeCCCcccHHHHHHHHHH---CCCEE-----------ec-----------------CCCCEEEEECC-C
Confidence 35688888873 3456778888775 44421 11 11468999999 8
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q 020548 300 GTLDQRWSQFEKALSRMQD 318 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~~~ 318 (324)
..++++++.+.++|+++-+
T Consensus 322 ~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 322 DVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8888888888888877643
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=7.7e-14 Score=122.10 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=129.2
Q ss_pred CCEEEEcCCCchhHHHHHh----------hhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---
Q 020548 15 GGHVVAARTLYGGTHALLT----------HFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN--- 81 (324)
Q Consensus 15 gd~vl~~~p~y~~~~~~~~----------~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~--- 81 (324)
..+|+.....|++...... .+.+. ...+..++.+|++.|++.+ ++++.+|++++.+...|...+
T Consensus 122 r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~--~~~~~~~p~~d~~~l~~~~-~~~iAavi~EPi~g~~G~~~~~~~ 198 (387)
T d1vefa1 122 RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--VEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPE 198 (387)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--SSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHH
T ss_pred cceecccccCCCCCccceEeccCCccccCCCCCC--CCCceEeCCCCHHHHHHhc-CCCeEEEEEECCCCCCCCccCCHH
Confidence 4688888888866432221 23332 2345667778999999999 889999999998887887754
Q ss_pred -hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhhh
Q 020548 82 -IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 153 (324)
Q Consensus 82 -~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~~ 153 (324)
+++|.++|++||+++|+||++++|... -....+|+++ ++|.+++ |..+ +.++..++.++.+.+...
T Consensus 199 ~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~--~gK~l~g-G~~~-~~~~~~~~~~~~~~~~~~-- 272 (387)
T d1vefa1 199 FLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILT--LAKALGG-GVPL-GVAVMREEVARSMPKGGH-- 272 (387)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS--
T ss_pred HHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceee--ecccCCC-Cccc-cccccceeeeeccccCCc--
Confidence 889999999999999999999777321 1234678888 8999987 6786 777777777666544332
Q ss_pred hhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEE
Q 020548 154 LMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 231 (324)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 231 (324)
....+-.+..++++...++.+. ...++..+..+++.+.|++...+... ...+.|.++.+
T Consensus 273 --g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~-----------------~vrg~Gl~~~i 333 (387)
T d1vefa1 273 --GTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIR-----------------EVRGMGLMVGL 333 (387)
T ss_dssp --CCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEE-----------------EEEEETTEEEE
T ss_pred --cccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhcCCCceE-----------------EEeecceEEEE
Confidence 1111223444444333333332 34455677778888888876432110 12257889999
Q ss_pred EeCC
Q 020548 232 DMET 235 (324)
Q Consensus 232 ~l~~ 235 (324)
++++
T Consensus 334 e~~~ 337 (387)
T d1vefa1 334 ELKE 337 (387)
T ss_dssp EESS
T ss_pred EEeC
Confidence 9974
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.57 E-value=2.2e-14 Score=126.50 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred CEEEEcCCCchhHHHHHhhhcCcc--------cceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----hH
Q 020548 16 GHVVAARTLYGGTHALLTHFFPRA--------CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IP 83 (324)
Q Consensus 16 d~vl~~~p~y~~~~~~~~~~~~~~--------~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 83 (324)
..++.....|++............ .-..+...+.++.+.++..+..+++.+|++++.+...|...+ ++
T Consensus 131 ~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~ 210 (404)
T d1z7da1 131 AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQ 210 (404)
T ss_dssp CEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred cccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHH
Confidence 467777777766543332110000 001233445568899998885678999999999888898865 89
Q ss_pred HHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHHHhh
Q 020548 84 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 150 (324)
Q Consensus 84 ~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~ 150 (324)
+|.++|+++|+++|+||++.++.. .-....+|+++ ++|.+++...++ |.++.++++++.+.+..
T Consensus 211 ~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt--~gK~l~gG~~p~-~~v~~~~~i~~~~~~~~ 281 (404)
T d1z7da1 211 GVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVIL--LGKALSGGHYPI-SAVLANDDIMLVIKPGE 281 (404)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHTTCCTTC
T ss_pred HHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEE--EcccccCCCCCc-ccccchHHHHccCCCCC
Confidence 999999999999999999977632 22334678886 999998855786 99999999887765543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.54 E-value=9.3e-14 Score=121.46 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=135.5
Q ss_pred chHHHHHHHc-cCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC------CHH--HHHHhhhcCCceEEEEecC
Q 020548 2 SAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHE--MVNSAIVQGRTKVLYFESI 72 (324)
Q Consensus 2 ~ai~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~------d~~--~l~~~l~~~~~~~v~~~~~ 72 (324)
+|+.++++++ +++||+|++++.+|.+....+. ..|.+++++|.+ +.+ ++.... ..++++|++.
T Consensus 47 ~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~-----~~g~~pv~~Di~~~~~~~~~~~~~~~~~~-~~~~~aii~~-- 118 (374)
T d1o69a_ 47 AALHLALRVAGVKQDDIVLASSFTFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAIKEC-EKKPKALILT-- 118 (374)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHHHHC-SSCCCEEEEE--
T ss_pred HHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHh-----hccceeEecccccccccccccccccchhc-cccccccccc--
Confidence 4788888887 8899999999999999887773 378999999875 122 223334 6788999965
Q ss_pred CCCcccccChHHHHHHHHhcCCEEEEcCCCCcC-CCCccCC--CCcEEEeCCc--cccccCCCeeEEEE-EcChhHHHHH
Q 020548 73 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARL--GADVVVHSIS--KFISGGADIIAGAV-CGPANLVNSM 146 (324)
Q Consensus 73 ~nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~~-~~~~~~~--~~d~~~~S~s--K~~~~~g~r~~G~i-~~~~~~~~~l 146 (324)
+..|...+++++.++|+++|++||+|.+++.. ....... -.|+.++||+ |.++..+ ||.+ +.++++++.+
T Consensus 119 -~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K~l~tge---GG~i~tnn~~~~~~~ 194 (374)
T d1o69a_ 119 -HLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSG---GGMLIGKNKEKIEKA 194 (374)
T ss_dssp -CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS---CEEEEESCHHHHHHH
T ss_pred -ccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCcccccccc---ceeehhhhHHHHHhh
Confidence 46899999999999999999999999998332 2222222 2589998885 8886644 4555 5677888888
Q ss_pred HHhhhhhh--------hccC--CCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhC
Q 020548 147 MDLHQGAL--------MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 197 (324)
Q Consensus 147 ~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 197 (324)
+....... ...| ..+....|+....++..++..+++.+++++.+.+.|.+.
T Consensus 195 ~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 195 RFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp HHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhcccc
Confidence 87654200 0112 237777788777788888888888888888888888765
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.54 E-value=9.7e-14 Score=121.20 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=139.3
Q ss_pred chHHHHHHHc-cCCC--CEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCC
Q 020548 2 SAISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESIS 73 (324)
Q Consensus 2 ~ai~~~~~~~-~~~g--d~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~ 73 (324)
+|+.+++.++ +++| |+|+++.-+|.+....+. ..|.+++++|.+ +.+++++.+ +.++++|++.
T Consensus 57 ~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~-----~~G~~pv~vDi~~~~~~~~~~~~~~~-~~~t~avi~v--- 127 (371)
T d2fnua1 57 SALLTLYRNFSEFSADRNEIITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSV--- 127 (371)
T ss_dssp HHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEE---
T ss_pred HHHHHHHHHhcccCCCCCeeecccccccccceeee-----ccCcccccccccccccccchhhhhhc-cchhhccccc---
Confidence 4677888876 4445 489999999999888773 379999999875 557777777 8899999966
Q ss_pred CCcccccChHHHHHHHHhcCCEEEEcCCCCc-CCCCc--cCCCCcEEEeCC--ccccccCCCeeEEEEE-cChhHHHHHH
Q 020548 74 NPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSP--ARLGADVVVHSI--SKFISGGADIIAGAVC-GPANLVNSMM 147 (324)
Q Consensus 74 nptG~~~~~~~i~~l~~~~~~~~ivD~~~~~-~~~~~--~~~~~d~~~~S~--sK~~~~~g~r~~G~i~-~~~~~~~~l~ 147 (324)
+..|...+++++.++|+++|+++|+|.+++. ..... ....-|+.++|| +|.++..+ ||+++ .++++.+.++
T Consensus 128 h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~---GG~i~t~~~~~~~~~~ 204 (371)
T d2fnua1 128 DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAE---GGAVVTNDSELHEKMK 204 (371)
T ss_dssp CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS---CEEEEESCHHHHHHHH
T ss_pred cccccccccccccccccccchhhccchhhccCceeccccCCcccccccccccccccccccc---ceEEEeechhhhhhcc
Confidence 4789999999999999999999999999833 22222 122346667776 89887655 57665 5678888888
Q ss_pred Hhhhhhh----------h--ccCCCCCHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCC
Q 020548 148 DLHQGAL----------M--LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL 199 (324)
Q Consensus 148 ~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 199 (324)
....... . .....++...++..+.++..++...++.++++..+.+.|.+.+.
T Consensus 205 ~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~~~~ 268 (371)
T d2fnua1 205 LFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPY 268 (371)
T ss_dssp HHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhccccccccc
Confidence 7654210 0 11233777778777878888888888888999999999988765
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1e-12 Score=118.18 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=115.7
Q ss_pred chHHHHHHHccCCCCE---------EEEcCCCchhHHHHHhhhcCcccceeEEEecCC---------------CHHHHHH
Q 020548 2 SAISSVLMQLCSSGGH---------VVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNS 57 (324)
Q Consensus 2 ~ai~~~~~~~~~~gd~---------vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~---------------d~~~l~~ 57 (324)
+|...++.+++++||. ++.+...|..+.... ...|..+..++.+ |++++++
T Consensus 100 ~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 174 (467)
T d2v1pa1 100 GAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS-----QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp TTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHH-----HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHH-----HHcCCeeeecccccccccccccccccCCCHHHHHH
Confidence 4666777777665554 444444444444444 2256666665432 7889999
Q ss_pred hhhc---CCceEEEEecCCCCcccc-c---ChHHHHHHHHhcCCEEEEcCCC-CcCC------------CCcc------C
Q 020548 58 AIVQ---GRTKVLYFESISNPTLAV-A---NIPELSRLAHDKGVTVVVDNTF-SPLV------------LSPA------R 111 (324)
Q Consensus 58 ~l~~---~~~~~v~~~~~~nptG~~-~---~~~~i~~l~~~~~~~~ivD~~~-~~~~------------~~~~------~ 111 (324)
.+.. +.++++++++.+|..|-. . ++++|.++|++||+++++|+++ .+.. ..+. -
T Consensus 175 ~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 254 (467)
T d2v1pa1 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY 254 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG
T ss_pred HHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhc
Confidence 8842 357889999888877644 3 5789999999999999999997 2110 0110 1
Q ss_pred CCCcEEEeCCccccccCCCeeEEEEEcChhH-HHHHHHhhhhhhh----ccCCCCCHHHHHHHh--cCcccHHHHHHHHH
Q 020548 112 LGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALM----LLGPTMNPKVAFELS--ERIPHLGLRMKEHC 184 (324)
Q Consensus 112 ~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~-~~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 184 (324)
..+|++.+|.+|.++++. ||+++.+++. ............. ..........+.... .......+..++..
T Consensus 255 ~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 331 (467)
T d2v1pa1 255 KYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331 (467)
T ss_dssp GGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 147899999999987765 6888776543 3333322221100 111122222222211 11122235566677
Q ss_pred HHHHHHHHHHHhCCCcee
Q 020548 185 HRALIFARRMKKLGLKVL 202 (324)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~ 202 (324)
++.+++.+.|++.+..+.
T Consensus 332 ~~~~~l~~~L~~~~~~v~ 349 (467)
T d2v1pa1 332 AQVQYLVDGLEEIGVVCQ 349 (467)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 889999999999876543
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.41 E-value=4.4e-11 Score=101.93 Aligned_cols=253 Identities=12% Similarity=0.036 Sum_probs=144.7
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcC-----Cce-EEEEec
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQG-----RTK-VLYFES 71 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-----~~~-~v~~~~ 71 (324)
|+..++..++.+++.+++....+.......... ...+..+..++. .+++++++.+... .+. .++...
T Consensus 66 An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (345)
T d1v72a1 66 ANALCLSAMTPPWGNIYCHPASHINNDECGAPE--FFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSIT 143 (345)
T ss_dssp HHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH--HHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred HHHHHHHHHHhcCCccccccccceeeechhhHH--HhcCcccccccccccccccHHHhhhhhcccccccccccceeeeee
Confidence 567777777888888888887776654332111 112444444433 3889999888321 223 334445
Q ss_pred CCCCccccc---ChHHHHHHHHhcCCEEEEcCCCCcCC-----CCcc----CCCCcEEEeCCccccccCCCeeEEEEEcC
Q 020548 72 ISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV-----LSPA----RLGADVVVHSISKFISGGADIIAGAVCGP 139 (324)
Q Consensus 72 ~~nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~~~-----~~~~----~~~~d~~~~S~sK~~~~~g~r~~G~i~~~ 139 (324)
+.|+.+... +++++.++|+++|+++++|+++.+.. .... ....+....+.+|...+. . ++.+...
T Consensus 144 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~ 220 (345)
T d1v72a1 144 QATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA--A-EAIVLFN 220 (345)
T ss_dssp SSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSS--C-EEEEESS
T ss_pred ccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccccc--c-cccccch
Confidence 666666654 56788889999999999999983321 1111 113455665555544332 2 2444444
Q ss_pred hhHHHHHHHhhhhhhhccCCCCCHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHH
Q 020548 140 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLK 216 (324)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~ 216 (324)
............. ...+.......+..... ..........+..++..++.+.+.+++. .+..|.
T Consensus 221 ~~~~~~~~~~~~~--~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~----------- 287 (345)
T d1v72a1 221 TSLATEMSYRRKR--AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT----------- 287 (345)
T ss_dssp GGGHHHHHHHHHH--TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC-----------
T ss_pred hhhhhhccccccc--cccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCC-----------
Confidence 4444333322221 12223333333332222 2223344555567778888888988865 555554
Q ss_pred HHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEe
Q 020548 217 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 296 (324)
Q Consensus 217 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~ 296 (324)
.++++.+.+++ . ..+++.. .|+ .+ .+. ...++.+|||+
T Consensus 288 --------~~niv~~~~~~-~----~~~~L~~---~gi-~v----------~~~---------------~~~~~~lR~~~ 325 (345)
T d1v72a1 288 --------EANILFCRLDS-A----MIDALLK---AGF-GF----------YHD---------------RWGPNVVRFVT 325 (345)
T ss_dssp --------CSSEEEEEECH-H----HHHHHHH---TTC-BC----------BCS---------------SSSTTEEEEEC
T ss_pred --------CccEEEEEcCH-H----HHHHHHH---cCC-Cc----------ccc---------------CCCCCEEEEEC
Confidence 46788888863 2 2333442 121 11 110 11257899999
Q ss_pred ccCCCHHHHHHHHHHHHHhh
Q 020548 297 GYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 297 g~~~~~~~~~~~l~~~l~~~ 316 (324)
+ ..+++++++.+.++|++.
T Consensus 326 ~-~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 326 S-FATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp C-TTCCHHHHHHHHHHHHHT
T ss_pred C-CCCCHHHHHHHHHHHHHh
Confidence 9 999999999998888764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=9.2e-13 Score=116.77 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=67.1
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcEEEeCCccccccCCC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD 130 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~~~~S~sK~~~~~g~ 130 (324)
.++.+|++++.+...|...+ ++.|.++|+++|+++|+||+++++.. .-....+|+++ ++|.+++ |.
T Consensus 197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g-G~ 273 (425)
T d1sffa_ 197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG-GF 273 (425)
T ss_dssp GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT-SS
T ss_pred cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--cccccCC-Cc
Confidence 46899999998887887653 78999999999999999999977532 12234678888 9999987 78
Q ss_pred eeEEEEEcChhHHHHHHHh
Q 020548 131 IIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 131 r~~G~i~~~~~~~~~l~~~ 149 (324)
++ |.+++++++++.+...
T Consensus 274 P~-~av~~~~~i~~~~~~~ 291 (425)
T d1sffa_ 274 PL-AGVTGRAEVMDAVAPG 291 (425)
T ss_dssp CC-EEEEEEHHHHTTSCTT
T ss_pred ce-EEEEEcHHHHHhhCCC
Confidence 87 8888998888776544
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=7.8e-12 Score=110.59 Aligned_cols=218 Identities=11% Similarity=0.123 Sum_probs=135.7
Q ss_pred CHHHHHHhhh--cCCceEEEEecCC-CCccccc-C---hHHHHHHHHhcCCEEEEcCCCCcCCC-------CccCCCCcE
Q 020548 51 DHEMVNSAIV--QGRTKVLYFESIS-NPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADV 116 (324)
Q Consensus 51 d~~~l~~~l~--~~~~~~v~~~~~~-nptG~~~-~---~~~i~~l~~~~~~~~ivD~~~~~~~~-------~~~~~~~d~ 116 (324)
+++++++.+. .+++.+|++++.. +..|... | +++|.++|+++|+++|+||++.++.. .......|+
T Consensus 190 ~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi 269 (429)
T d1s0aa_ 190 DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI 269 (429)
T ss_dssp GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred hhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccc
Confidence 4555555442 3679999999864 5555543 3 88999999999999999999977732 223346899
Q ss_pred EEeCCccccccCCCeeEEEEEcChhHHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHH
Q 020548 117 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARR 193 (324)
Q Consensus 117 ~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 193 (324)
++ ++|.+++.+.++ |.++.++++.+.+.....+ ........-.+..++.++..++.++ +..++..+..+++.+.
T Consensus 270 ~~--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~ 346 (429)
T d1s0aa_ 270 LC--LGKALTGGTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQ 346 (429)
T ss_dssp EE--ECGGGGTSSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cc--cccccccccccc-cchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHH
Confidence 88 899998866887 9999999998887643211 0001111122333333333333332 3455566677778888
Q ss_pred HHhCCCceeCCCCCCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccc
Q 020548 194 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 273 (324)
Q Consensus 194 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 273 (324)
|+++.. .|.+. +..|.|.++.+++........+...+.. .|+ ++.+
T Consensus 347 L~~l~~---~~~v~-------------~vrg~Gl~~~~e~~~~~~~~~~~~~~~~---~Gl-----------~~~~---- 392 (429)
T d1s0aa_ 347 LAPARD---AEMVA-------------DVRVLGAIGVVETTHPVNMAALQKFFVE---QGV-----------WIRP---- 392 (429)
T ss_dssp HGGGGG---CTTEE-------------EEEEETTEEEEEESSCBCHHHHHHHHHH---TTE-----------ECCC----
T ss_pred HHHhcc---CCceE-------------EEeecccEEEEEecCcccHHHHHHHHHH---CCc-----------EEEe----
Confidence 866421 11110 2236788999999855556666666553 232 1111
Q ss_pred cCCCCHHHHHhcCCCCCeEEEEeccCCCHHHHHHHHHHHHHhhhhcC
Q 020548 274 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 320 (324)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~~~~l~~~l~~~~~~~ 320 (324)
.++.+|++.. +.-++++++.+.++|++.-++.
T Consensus 393 --------------~g~~i~~~Pp-l~it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 393 --------------FGKLIYLMPP-YIILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp --------------BTTEEEECCC-TTCCHHHHHHHHHHHHHHTSSG
T ss_pred --------------cCCEEEEeCC-cCCCHHHHHHHHHHHHHHHHhh
Confidence 1367999987 6666766777777776554443
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=3.8e-12 Score=111.60 Aligned_cols=249 Identities=12% Similarity=0.091 Sum_probs=160.5
Q ss_pred CCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCCCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHhcC
Q 020548 14 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 93 (324)
Q Consensus 14 ~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 93 (324)
..++++++..+|+.+.......+.. .|++++.++.++.......+ ++++.+|++++| |-.|.+.+++++.+++|+.|
T Consensus 149 ~~~~~~v~~~~~p~~~~v~~t~a~~-~g~~vv~v~~~~~~~~~~~~-~~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G 225 (437)
T d1wyua1 149 GRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLPLEGGRTPLPEV-GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAG 225 (437)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEECCBTTBCCCCCC-CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTT
T ss_pred cccccccccccChHHhhhhhhhccc-ceeeEEeeecccccchhhhh-ccceeEEEEccc-cccccccchHHHHHHhhhcc
Confidence 4578999999999988877655554 79999998875332222235 678999999999 55799999999999999999
Q ss_pred CEEEEcCCC--CcCCCCccCCCCcEEEeCCccc------cccCCCeeEEEEEcChhHHHHHHHhhhh-------------
Q 020548 94 VTVVVDNTF--SPLVLSPARLGADVVVHSISKF------ISGGADIIAGAVCGPANLVNSMMDLHQG------------- 152 (324)
Q Consensus 94 ~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~------~~~~g~r~~G~i~~~~~~~~~l~~~~~~------------- 152 (324)
.++++|..- ......|.++|+|+++++ +|. +|||+ +|++.+++++.+.+-....+
T Consensus 226 ~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l 301 (437)
T d1wyua1 226 ALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFIL 301 (437)
T ss_dssp CEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEE
T ss_pred ceEEeeechhhhhccccccccccceEeec-cceeccccCCCcCc---cccccccchhhccccccccccccccCCccccee
Confidence 998888554 223356788899999988 554 44444 59998888776655321100
Q ss_pred ------------hhhccCCCCCHHHH-----HHHhcCcccHHHHHHHHHHHHHHHHHHHHhCC-CceeCCCCCCCchhHH
Q 020548 153 ------------ALMLLGPTMNPKVA-----FELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHEL 214 (324)
Q Consensus 153 ------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~p~~~~~~~~~~ 214 (324)
.++...++.....+ ++...+.+.+.+.-++...+++++.+.|.+.+ .....+.
T Consensus 302 ~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~--------- 372 (437)
T d1wyua1 302 TLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--------- 372 (437)
T ss_dssp CCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS---------
T ss_pred ecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC---------
Confidence 11112222222221 12223334466666677899999999998874 4443332
Q ss_pred HHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEE
Q 020548 215 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 294 (324)
Q Consensus 215 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~ 294 (324)
..-.-|.++++ .++..+.+++.. .|+++ +..... -..++.+.+
T Consensus 373 ---------~~f~ef~v~~~--~~~~~i~k~L~d---~G~~~-------------~~~~~~----------~~~~~~lli 415 (437)
T d1wyua1 373 ---------PFFNEFALALP--KDPEAVRRALAE---RGFHG-------------ATPVPR----------EYGENLALF 415 (437)
T ss_dssp ---------SBCSEEEEECS--SCHHHHHHHHHH---TTCCC-------------CEECCT----------TSCSSEEEE
T ss_pred ---------CeeeEEEEECC--CCHHHHHHHHHh---CCCCC-------------Cccccc----------CCCCCeEEE
Confidence 01113445554 235567677664 34311 111000 112478999
Q ss_pred EeccCCCHHHHHHHHHHHHHhh
Q 020548 295 SVGYLGTLDQRWSQFEKALSRM 316 (324)
Q Consensus 295 s~g~~~~~~~~~~~l~~~l~~~ 316 (324)
++. -.++.++++.|.++|+++
T Consensus 416 ~~T-E~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 416 AAT-ELHEEEDLLALREALKEV 436 (437)
T ss_dssp ECC-TTCCHHHHHHHHHHHHHH
T ss_pred ecC-CCCCHHHHHHHHHHHHHh
Confidence 998 888899999999999765
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.35 E-value=1.1e-11 Score=105.08 Aligned_cols=254 Identities=13% Similarity=0.028 Sum_probs=142.9
Q ss_pred hHHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecC---CCHHHHHHhhhc------CCceEEEEecCC
Q 020548 3 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQ------GRTKVLYFESIS 73 (324)
Q Consensus 3 ai~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~l~~------~~~~~v~~~~~~ 73 (324)
|+..++..++++++++++..+.|..+......... ........+. .+.+....+... .++.++++..++
T Consensus 64 an~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T d1svva_ 64 TNLIACSLALRPWEAVIATQLGHISTHETGAIEAT--GHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTT 141 (340)
T ss_dssp HHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT--TCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSC
T ss_pred HHHHHHHHHhhhccccccccccceeeeeccccccc--ceeeeecccccccccchhHHHHhhhhhcccCCcceeeeecccc
Confidence 67778888899999999999888776533221111 1122222211 123332222211 123344445455
Q ss_pred CCccccc---ChHHHHHHHHhcCCEEEEcCCCCc-CCC-CccCC-------CCcEEEeCCccccccCCCeeEEEEEcChh
Q 020548 74 NPTLAVA---NIPELSRLAHDKGVTVVVDNTFSP-LVL-SPARL-------GADVVVHSISKFISGGADIIAGAVCGPAN 141 (324)
Q Consensus 74 nptG~~~---~~~~i~~l~~~~~~~~ivD~~~~~-~~~-~~~~~-------~~d~~~~S~sK~~~~~g~r~~G~i~~~~~ 141 (324)
| .|.+. ++..+.+.|+++|.++++|+++.. ... ..... ..+....+..|..++.+ +++......
T Consensus 142 ~-~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 217 (340)
T d1svva_ 142 E-VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG---EALIILNDA 217 (340)
T ss_dssp T-TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC---EEEEECSGG
T ss_pred c-ccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccccc---ccccccchh
Confidence 5 45543 466778899999999999999832 211 11111 24566666666554433 366665555
Q ss_pred HHHHHHHhhhhhhhccCCCCCHHH--HHHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHh
Q 020548 142 LVNSMMDLHQGALMLLGPTMNPKV--AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 219 (324)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (324)
............ .......... ++.............++...++.++.+.|++.|..+..|.
T Consensus 218 ~~~~~~~~~~~~--~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~-------------- 281 (340)
T d1svva_ 218 LKPNARHLIKQR--GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS-------------- 281 (340)
T ss_dssp GCTTHHHHHHHT--TCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC--------------
T ss_pred hhhhhhhhcccc--cCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCC--------------
Confidence 444444332211 2222222222 2222223333445666678888999999999998776665
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccC
Q 020548 220 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 299 (324)
Q Consensus 220 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~ 299 (324)
.++++.+.+++ ....++.+.+.. .++ +.. ...++.||+|++ .
T Consensus 282 -----~~~~v~~~~~~-~~~~~l~~~~~~---~~~--------------~~~--------------~~~~~~vR~s~~-~ 323 (340)
T d1svva_ 282 -----ASNQLFPILEN-TMIAELNNDFDM---YTV--------------EPL--------------KDGTCIMRLCTS-W 323 (340)
T ss_dssp -----SSSEECBEEEH-HHHHHHTTTEEC---EEE--------------EEE--------------TTTEEEEEEECC-T
T ss_pred -----CceEEEEeCCH-HHHHHHHHhhhh---hcc--------------ccc--------------CCCCcEEEEECC-C
Confidence 45677777753 345555444332 110 000 112478999999 9
Q ss_pred CCHHHHHHHHHHHHHhh
Q 020548 300 GTLDQRWSQFEKALSRM 316 (324)
Q Consensus 300 ~~~~~~~~~l~~~l~~~ 316 (324)
.+++++++.+.++|+++
T Consensus 324 ~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 324 ATEEKECHRFVEVLKRL 340 (340)
T ss_dssp TCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 99999999999888764
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.35 E-value=1.9e-11 Score=109.70 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=89.5
Q ss_pred CHHHHHHhhhc---CCceEEEEecCCCCcccc-c---ChHHHHHHHHhcCCEEEEcCCCC-cCC-----CCccC------
Q 020548 51 DHEMVNSAIVQ---GRTKVLYFESISNPTLAV-A---NIPELSRLAHDKGVTVVVDNTFS-PLV-----LSPAR------ 111 (324)
Q Consensus 51 d~~~l~~~l~~---~~~~~v~~~~~~nptG~~-~---~~~~i~~l~~~~~~~~ivD~~~~-~~~-----~~~~~------ 111 (324)
|++++++++.. +.+.+++++.++|..|.. . ++++|.++|++||+++++|+++. +.. ..+..
T Consensus 167 d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~ 246 (465)
T d1ax4a_ 167 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK 246 (465)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHH
T ss_pred CHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchh
Confidence 88999988842 346677778777766543 3 47899999999999999999972 110 01100
Q ss_pred -------CCCcEEEeCCccccccCCCeeEEEEEcChh--HHHHHHHhhhh-hhhccCCCCCHHHHHHHhcCc--ccHHHH
Q 020548 112 -------LGADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMMDLHQG-ALMLLGPTMNPKVAFELSERI--PHLGLR 179 (324)
Q Consensus 112 -------~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~--~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 179 (324)
...|++.+|.+|..++++ +|+++.+.+ +.......... ......+.........+.... ...+..
T Consensus 247 ~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~ 323 (465)
T d1ax4a_ 247 EVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY 323 (465)
T ss_dssp HHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHH
Confidence 026899999999877665 688877643 23333222110 101111222322222111111 112345
Q ss_pred HHHHHHHHHHHHHHHHhCCCceeCC
Q 020548 180 MKEHCHRALIFARRMKKLGLKVLYP 204 (324)
Q Consensus 180 ~~~~~~~~~~l~~~L~~~~~~~~~p 204 (324)
.++..++.+++.+.|++.+.++..|
T Consensus 324 ~~~~~~~~~~l~~~L~~~g~~~v~~ 348 (465)
T d1ax4a_ 324 LHYRIGQVKYLGDRLREAGIPIQYP 348 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCBCSS
T ss_pred HHHHHHHHHHHHHHHHhhcCccccC
Confidence 5566778899999999988765433
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.35 E-value=4.9e-12 Score=111.98 Aligned_cols=142 Identities=17% Similarity=0.261 Sum_probs=98.0
Q ss_pred hHHHHHHHc--cCCCCEEEEcCCCchhHHHHH---------hhhcCccc------ceeEEEecCCCHHHHHHhhhc--CC
Q 020548 3 AISSVLMQL--CSSGGHVVAARTLYGGTHALL---------THFFPRAC------NITTTFVDISDHEMVNSAIVQ--GR 63 (324)
Q Consensus 3 ai~~~~~~~--~~~gd~vl~~~p~y~~~~~~~---------~~~~~~~~------g~~~~~~~~~d~~~l~~~l~~--~~ 63 (324)
|+..+++.. .....+|+.....|++..... ....+... .......+..|++++++.+++ ++
T Consensus 120 A~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 199 (427)
T d2gsaa_ 120 ACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGE 199 (427)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCC
Confidence 445555532 123468888888887632111 01111101 112344556799999999943 47
Q ss_pred ceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC------ccCCCCcEEEeCCccccccCCCeeE
Q 020548 64 TKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLGADVVVHSISKFISGGADIIA 133 (324)
Q Consensus 64 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~------~~~~~~d~~~~S~sK~~~~~g~r~~ 133 (324)
+++|++++.+...|.+.+ +++|.++|++||+++|+||++.++... -.....|+++ ++|.+++ |..+
T Consensus 200 iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~--~gK~lgg-G~p~- 275 (427)
T d2gsaa_ 200 IAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTT--LGKIIGG-GLPV- 275 (427)
T ss_dssp EEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEE--ECGGGGT-TSCC-
T ss_pred eEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHh--hhhccCC-Ccce-
Confidence 889999998888888876 999999999999999999999766321 1223578988 8999977 7887
Q ss_pred EEEEcChhHHHHHHH
Q 020548 134 GAVCGPANLVNSMMD 148 (324)
Q Consensus 134 G~i~~~~~~~~~l~~ 148 (324)
|.+++++++++.+.+
T Consensus 276 ~a~~~~~~i~~~~~~ 290 (427)
T d2gsaa_ 276 GAYGGKREIMQLVAP 290 (427)
T ss_dssp EEEEECHHHHTTBTT
T ss_pred eeeeehHHHHHHhcc
Confidence 888888888877754
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.35 E-value=1.4e-12 Score=113.18 Aligned_cols=255 Identities=10% Similarity=0.020 Sum_probs=146.6
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+.+++..+..+|+++++... +.+...+.....+ .|..+..+..+ +++.+++.+ ... +.+. .+|.||.
T Consensus 80 ~ea~~~~l~~~~~~~l~~~~--g~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~---v~~~tg~ 151 (361)
T d2c0ra1 80 FAMIPMNFLKEGQTANYVMT--GSWASKALKEAKL-IGDTHVAASSEASNYMTLPKLQEIQ-LQD-NAAY---LHLTSNE 151 (361)
T ss_dssp HHHHHHHHCCTTCEEEEEEC--SHHHHHHHHHHHH-HSCEEEEEECGGGTTCSCCCGGGCC-CCT-TEEE---EEEESEE
T ss_pred HHHHHhccccCCCceEEEee--chhhhhhhhhhhh-cCceeeeeccccccccchhhhhhhc-ccC-cceE---EEEeccc
Confidence 45556667888888877664 3344444444444 67777666543 566666665 322 3333 4478999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHH------------H
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV------------N 144 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~------------~ 144 (324)
..++.++.++|+++|+++++|.++ ++...+..+ .|+.+.|.+|.++++|... +++..+ .+. .
T Consensus 152 ~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~--~di~~~s~~k~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 227 (361)
T d2c0ra1 152 TIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSGVTV-VIVRED-LVAESPKHLPTMLRYD 227 (361)
T ss_dssp TTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSSCEE-EEEEGG-GSSSCCTTSCGGGCHH
T ss_pred ceecceEEEeeccCCceEEEEeecccccccccccc--ceeEEEecccccccccCcE-EEEEhH-HhhhCccccccccccc
Confidence 999999999999999999999997 223334444 4566677899998877442 333322 111 1
Q ss_pred HHHHhhhhhhhccCCCCCHHHHHHHh-----cCcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHH
Q 020548 145 SMMDLHQGALMLLGPTMNPKVAFELS-----ERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSM 218 (324)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~ 218 (324)
....... .....+......... ..........++++.++..+......... ....+. +..
T Consensus 228 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------- 293 (361)
T d2c0ra1 228 TYVKNNS----LYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDS--------- 293 (361)
T ss_dssp HHHHTTT----CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGG---------
T ss_pred ccccccc----ccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCC-hhh---------
Confidence 1111111 111221111111111 11122334445555666666666665543 222221 100
Q ss_pred hccCCCcceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEecc
Q 020548 219 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY 298 (324)
Q Consensus 219 ~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~ 298 (324)
.+..+++|.+++..+...+.+.|+. .|+ .+.-| + .. . +.+|+|+.
T Consensus 294 -----rS~~~~~~~~~~~~~~~~~~~~L~~---~GI-~~~~G-~------------~~--------~----g~~RIs~~- 338 (361)
T d2c0ra1 294 -----RSDMNITFRLASEELEKEFVKASEQ---EGF-VGLKG-H------------RS--------V----GGLRASIY- 338 (361)
T ss_dssp -----BCSSEEEEECSCHHHHHHHHHHHHH---TTE-ESCBC-C------------TT--------T----CSEEEECC-
T ss_pred -----ccceEEEEECCCcccHHHHHHHHHH---CCC-EEecC-C------------Cc--------C----CeEEEEec-
Confidence 1234788899877777888888875 454 22222 1 00 0 23999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhc
Q 020548 299 LGTLDQRWSQFEKALSRMQDS 319 (324)
Q Consensus 299 ~~~~~~~~~~l~~~l~~~~~~ 319 (324)
..++.++++.|.++|+.+.++
T Consensus 339 ~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 339 NAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999988654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.2e-12 Score=111.61 Aligned_cols=261 Identities=10% Similarity=-0.046 Sum_probs=150.2
Q ss_pred HHHHHHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCccc
Q 020548 4 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLA 78 (324)
Q Consensus 4 i~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~ 78 (324)
+.++...+..+++.+++....+.... +.....+ .|..+...... +.+.+++.+ ..+++++++.+.+|.||.
T Consensus 78 ~~a~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~t~~ 153 (360)
T d1bjna_ 78 FAAVPLNILGDKTTADYVDAGYWAAS--AIKEAKK-YCTPNVFDAKVTVDGLRAVKPMREW-QLSDNAAYMHYCPNETID 153 (360)
T ss_dssp HHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTT-TSEEEEEECEEEETTEEEECCGGGC-CCCSSCSCEEECSEETTT
T ss_pred Hhhhhhcccccccccceecccchhhh--hHHHHhh-cCccceeeccccCCCcchhhhhhhh-ccCCceeEEEeccccccc
Confidence 34444456777788877766554432 2233334 56655444321 344445555 678888888889999999
Q ss_pred ccChHHHHHHHHhcCCEEEEcCCCCcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHH--------HHH-Hh
Q 020548 79 VANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN--------SMM-DL 149 (324)
Q Consensus 79 ~~~~~~i~~l~~~~~~~~ivD~~~~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~--------~l~-~~ 149 (324)
..+.+++. ++.+++++++|.+++....+....+.|+++.|.+|++++|+... +++..+..... ... ..
T Consensus 154 ~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (360)
T d1bjna_ 154 GIAIDETP--DFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTI-VIVREDLLGKANIACPSILDYSILN 230 (360)
T ss_dssp TEECCCCC--CCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEE-EEEEGGGCSCCCTTSCGGGCHHHHH
T ss_pred Ccccccee--cccccceeeeeeeccccceeeeeccceeEEEEcccccccCCCce-eEeeehhhhhccccCCcchhhHHHH
Confidence 98877664 56778999999986433333333468999999999998877552 44443321100 000 01
Q ss_pred hhhhhhccCCCCCHHHHHH--H---hcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCC
Q 020548 150 HQGALMLLGPTMNPKVAFE--L---SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
.. . ......+....... . ...........+++.+.+..+.+.+...+.....+. +...
T Consensus 231 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~r 293 (360)
T d1bjna_ 231 DN-G-SMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVA---------------KRNR 293 (360)
T ss_dssp HT-T-TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBC---------------GGGB
T ss_pred hh-h-hhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCC---------------cccc
Confidence 11 0 01111111111111 1 111122334445556666666666666655332222 0012
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
+..+++|.+++......|.+.+.. .|+ .+..| |.. -+.+|+|++ ..++++
T Consensus 294 s~~v~~f~~~~~~~~~~~~~~l~~---~Gi-~~~~G-------------~~~------------~g~~Ris~~-~~~t~e 343 (360)
T d1bjna_ 294 SRMNVPFQLADSALDKLFLEESFA---AGL-HALKG-------------HRV------------VGGMRASIY-NAMPLE 343 (360)
T ss_dssp CSSEEEEEESSGGGHHHHHHHHHH---TTE-ECCBC-------------CTT------------TCSEEEECC-TTSCHH
T ss_pred cceEEEEEcCCcccHHHHHHHHHH---CCC-EeecC-------------CCc------------cCeEEEEec-CCCCHH
Confidence 345889999866666778777774 443 22222 000 134999999 888999
Q ss_pred HHHHHHHHHHhhhh
Q 020548 305 RWSQFEKALSRMQD 318 (324)
Q Consensus 305 ~~~~l~~~l~~~~~ 318 (324)
+++.|.++|+.+.+
T Consensus 344 dV~~li~~l~e~~~ 357 (360)
T d1bjna_ 344 GVKALTDFMVEFER 357 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.33 E-value=5e-12 Score=112.21 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=66.1
Q ss_pred cCCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCCc-------cCCCCcEEEeCCccccccCC
Q 020548 61 QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA 129 (324)
Q Consensus 61 ~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~~-------~~~~~d~~~~S~sK~~~~~g 129 (324)
.+++.+|++++.+...|...+ +++|.++|+++|+++|.||+++++.... ....+|+++ ++|.+++ |
T Consensus 199 ~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~g-G 275 (431)
T d1zoda1 199 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGA-G 275 (431)
T ss_dssp CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHT-T
T ss_pred cccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhc--ccccccc-c
Confidence 357899999998777777754 8999999999999999999997764211 233678888 9999987 6
Q ss_pred CeeEEEEEcChhHHHHHHHh
Q 020548 130 DIIAGAVCGPANLVNSMMDL 149 (324)
Q Consensus 130 ~r~~G~i~~~~~~~~~l~~~ 149 (324)
..+ +.++..++..+.....
T Consensus 276 ~p~-~av~~~~~~~~~~~~~ 294 (431)
T d1zoda1 276 LPL-AAIVTSAAIEERAHEL 294 (431)
T ss_dssp SSC-EEEEECHHHHHHHHHT
T ss_pred ccc-ceeeeeecchhhhhcc
Confidence 786 7777777777766543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.16 E-value=7e-11 Score=105.38 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=93.9
Q ss_pred CCceEEEEecCCCCcccccC----hHHHHHHHHhcCCEEEEcCCCCcCCCC-------ccCC--CCcEEEeCCccccccC
Q 020548 62 GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARL--GADVVVHSISKFISGG 128 (324)
Q Consensus 62 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~ivD~~~~~~~~~-------~~~~--~~d~~~~S~sK~~~~~ 128 (324)
+++.+|++++.+...|...+ +++|.++|+++|+++|+||++.++... -... .+|+++ ++|.+++
T Consensus 247 ~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~- 323 (461)
T d1ohwa_ 247 KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT- 323 (461)
T ss_dssp CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS-
T ss_pred CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc-
Confidence 67899999999888887753 889999999999999999999776421 1122 368887 8898865
Q ss_pred CCeeEEEEEcChhHHHHHHHhhhhhhhccCCCCCHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHHhCCCceeCCCC
Q 020548 129 ADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKLGLKVLYPGL 206 (324)
Q Consensus 129 g~r~~G~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~p~~ 206 (324)
++++. ...+.. ...... .. ..++ .+..+++++..++.+. ...++..+..+++.+.|+++..+ +|..
T Consensus 324 ----g~~~~-~~~~~~-~~~~~~-~~-T~~g--~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~--~~~~ 391 (461)
T d1ohwa_ 324 ----GGFFH-KEEFRP-NAPYRI-FN-TWLG--DPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQAR--YPQF 391 (461)
T ss_dssp ----EEEEE-CGGGSC-SSTTSS-CC-SCSS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--CTTT
T ss_pred ----ccccc-cccccc-cccccc-cc-cccc--ccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhh--CCCc
Confidence 23332 222211 111111 11 2222 2333333333333332 23344455556666666554211 1211
Q ss_pred CCCchhHHHHHHhccCCCcceEEEEEeCCHHHHHHHHHHhhc
Q 020548 207 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 248 (324)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~l~~ 248 (324)
.. +..|.|.++.+++++.....++++.+..
T Consensus 392 i~------------~vrG~Gl~~~ie~~~~~~~~~i~~~~~~ 421 (461)
T d1ohwa_ 392 IS------------RVRGRGTFCSFDTPDESIRNKLISIARN 421 (461)
T ss_dssp CE------------EEEEETTEEEEECSSHHHHHHHHHHHHH
T ss_pred eE------------EeeeeeEEEEEEcCCHHHHHHHHHHHHH
Confidence 00 2236788999999987777788887764
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.15 E-value=1.1e-11 Score=107.23 Aligned_cols=252 Identities=12% Similarity=-0.033 Sum_probs=132.7
Q ss_pred HHHccCCCCEEEEcCCCchhHHHHHhhhcCcccceeEEEecCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCh
Q 020548 8 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI 82 (324)
Q Consensus 8 ~~~~~~~gd~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 82 (324)
...+.++++.+++....+.+... +. ...+ .+......... .+++++... ...+.+. ..|.||...|+
T Consensus 84 ~~~~~~~~~~v~~~~~g~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~tg~~~~~ 155 (360)
T d1w23a_ 84 PMNLLTKGTIGNYVLTGSWSEKA-LK-EAKL-LGETHIAASTKANSYQSIPDFSEFQ--LNENDAY---LHITSNNTIYG 155 (360)
T ss_dssp HHHHCCTTCEEEEEECSHHHHHH-HH-HHHT-TSEEEEEEECGGGTSCSCCCGGGCC--CCTTEEE---EEEESEETTTT
T ss_pred HhhhcccCcccceeeccchhhhh-HH-HHHH-hhhcceeeccccccccchhhhhhcc--cccccce---eEecCCccccc
Confidence 33446677888887765544332 21 2222 44444443322 233333332 2233444 44678999999
Q ss_pred HHHHHHHHhcCCEEEEcCCC--CcCCCCccCCCCcEEEeCCccccccCCCeeEEEEEcChhHHHHHH---------Hhhh
Q 020548 83 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM---------DLHQ 151 (324)
Q Consensus 83 ~~i~~l~~~~~~~~ivD~~~--~~~~~~~~~~~~d~~~~S~sK~~~~~g~r~~G~i~~~~~~~~~l~---------~~~~ 151 (324)
++|.++|+++|+++++|.++ ++...+..++++|+..++.+|+++++ +|+++..+...+... ....
T Consensus 156 ~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (360)
T d1w23a_ 156 TQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGV----TVVIVKKDLLNTKVEQVPTMLQYATHIK 231 (360)
T ss_dssp EECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTC----EEEEEEHHHHCSCCTTCCGGGCHHHHHH
T ss_pred eeeeeccccceeeEEeeccccccccccccccccceEEeeccccccCCc----ceeeEechhhhcccccCCcchhhhhhhh
Confidence 99999999999999999997 33445556667788777666654332 244443332211110 0000
Q ss_pred hhhhccCCCCCHHHHHHHhc------CcccHHHHHHHHHHHHHHHHHHHHhCCC-ceeCCCCCCCchhHHHHHHhccCCC
Q 020548 152 GALMLLGPTMNPKVAFELSE------RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYG 224 (324)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~ 224 (324)
. ......+.......... .........++...++............ ...... +. ..
T Consensus 232 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~r 294 (360)
T d1w23a_ 232 -S-DSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-KG--------------SR 294 (360)
T ss_dssp -T-TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-GG--------------GB
T ss_pred -h-hhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCC-hh--------------hc
Confidence 0 01122222221111111 1111222333344444444444444432 222111 10 01
Q ss_pred cceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHH
Q 020548 225 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 304 (324)
Q Consensus 225 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~ 304 (324)
+..+++|.+++......|.+.+.. .|+ ...-|.. + -+.+|+|+. ...+.+
T Consensus 295 S~~vvsf~i~~~~~~~~~~~~l~~---~GI-~~~~G~~-~------------------------~ggiRiS~~-~~~t~e 344 (360)
T d1w23a_ 295 SLMNVTFNLRNEELNQQFLAKAKE---QGF-VGLNGHR-S------------------------VGGCRASIY-NAVPID 344 (360)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHH---TTE-ESCBCCT-T------------------------TCSEEEECC-TTSCHH
T ss_pred ceeEEEEEcCCCccHHHHHHHHHH---CCC-eeeeCCC-c------------------------cCcEEEEee-CCCCHH
Confidence 344789999877777888888775 444 3222210 0 134999997 777888
Q ss_pred HHHHHHHHHHhhhh
Q 020548 305 RWSQFEKALSRMQD 318 (324)
Q Consensus 305 ~~~~l~~~l~~~~~ 318 (324)
+++.|.++++.+.+
T Consensus 345 ~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 345 ACIALRELMIQFKE 358 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999988764
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=9.3e-08 Score=84.35 Aligned_cols=253 Identities=16% Similarity=0.104 Sum_probs=152.8
Q ss_pred EEEEcCCCchhHHHHHhhhcCcccceeEEEecC-----CCHHHHHHhhhcCCceEEEEecCCCCcccccChHHHHHHHHh
Q 020548 17 HVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 91 (324)
Q Consensus 17 ~vl~~~p~y~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 91 (324)
.+++..+.+.......... .+..+..++. .+.+.+.... .+++.++++++|++..+.....+++.+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~ 230 (471)
T d1wyub1 156 RVVLVPDSAHGSNPATASM----AGYQVREIPSGPEGEVDLEALKREL-GPHVAALMLTNPNTLGLFERRILEISRLCKE 230 (471)
T ss_dssp CEEEEETTSCTHHHHHHHH----TTCEEEEECBCTTSSBCHHHHHHHC-STTEEEEEECSSCTTSCCCTTHHHHHHHHHH
T ss_pred ccccCCcccccceeeeeec----ccceeecccccccccccchhhhhhh-hccccceeeccCCCcccccchhhhhHHHHHh
Confidence 4555555555544443222 3444444433 2788888877 7889999999997765555678999999999
Q ss_pred cCCEEEEcCCC--CcC-CCCccCCCCcEEEeCCccccccC---CCeeEEEEEcChhHHHHHHHhh---------------
Q 020548 92 KGVTVVVDNTF--SPL-VLSPARLGADVVVHSISKFISGG---ADIIAGAVCGPANLVNSMMDLH--------------- 150 (324)
Q Consensus 92 ~~~~~ivD~~~--~~~-~~~~~~~~~d~~~~S~sK~~~~~---g~r~~G~i~~~~~~~~~l~~~~--------------- 150 (324)
.+..+++|.+. ... ...|...+.|+++...++.||.| |++-.|++..++++.+.+-...
T Consensus 231 ~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~RE 310 (471)
T d1wyub1 231 AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRP 310 (471)
T ss_dssp HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCT
T ss_pred ccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCc
Confidence 99988888664 111 24455667888888788876543 2221489988888877663210
Q ss_pred hhhhhccCCCCCHHHH-----HHHhcCcccHHHHHHHHHHHHHHHHHHHHhCCCceeCCCCCCCchhHHHHHHhccCCCc
Q 020548 151 QGALMLLGPTMNPKVA-----FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 225 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (324)
++..+...++.+.+.+ ++.+.+.+.+.+.-+....++.++.+.|+..|+++..+. + .
T Consensus 311 qhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~-~-----------------f 372 (471)
T d1wyub1 311 KSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDG-P-----------------S 372 (471)
T ss_dssp TCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS-S-----------------C
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCceeccCc-c-----------------e
Confidence 0011122233333222 122334455666667779999999999988777654332 0 0
Q ss_pred ceEEEEEeCCHHHHHHHHHHhhccccccccccccCCccceeccccccccCCCCHHHHHhcCCCCCeEEEEeccCCCHHHH
Q 020548 226 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 305 (324)
Q Consensus 226 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~s~g~~~~~~~~ 305 (324)
-.-|.++++.......+.++|.. .|+++ | ...+| ...++.+-+.+. -.++.++
T Consensus 373 f~EFvv~~~~~~~~~~i~k~L~~---~G~~~---~----~~~~p----------------~~~~~~llv~vT-E~~tked 425 (471)
T d1wyub1 373 MHEFVAQPPEGFRALDLAKGLLE---LGFHP---P----TVYFP----------------LIVKEALMVEPT-ETEAKET 425 (471)
T ss_dssp CSCEEEBCSTTCCHHHHHHHHHH---TTCCC---C----EESCS----------------TTSTTCEEECCC-TTSCHHH
T ss_pred eeEEeecCCCCCCHHHHHHHHHH---cCCCC---C----cccCc----------------CCCCCeEEEecC-CCCCHHH
Confidence 11234455533334556666653 33322 1 01111 122466778887 7788899
Q ss_pred HHHHHHHHHhhhhc
Q 020548 306 WSQFEKALSRMQDS 319 (324)
Q Consensus 306 ~~~l~~~l~~~~~~ 319 (324)
|+.|.++|+.+.++
T Consensus 426 ID~lv~aL~~i~~e 439 (471)
T d1wyub1 426 LEAFAEAMGALLKK 439 (471)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|