Citrus Sinensis ID: 020549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEccccHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccccHHcccccccHcccccHcccccccHHcccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEccccHccccccccEcHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEEccHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mdidsglkilnskpteesghtqmeseessalkandKEKEEITESMDKLHieesssglagsssinfkrkpVIIIVVGMAGSGKTTFMHRLVCHtqsrnirgyvmnldpavmtlpfaanidirdTIRYKEVMKQfnlgpnggiltslnlfttKFDEVISLIERRADHLdyvlvdtpgqieifTWSASGAIITEAFASTFPTVVTYVvdtprsanpmtfmSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAissdhsytstLTNSLSLALDEFYKNLKSvgvssvsgaGIEAYFKAVEESAQEFMETYKYCLP
Flexible Loop (DISEMBL)
mdidsglkilnskpteesghtqmeseessalkandKEKEEITESMDKLHIEesssglagsssinfkrKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP
Low Complexity Region (SEG)
MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEEsssglagsssINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYtstltnslslALDEFYKNLKsvgvssvsgagIEAYFKAVEESAQEFMETYKYCLP
Disordered region (IsUnstruct)
***************************************************************NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYC**
Disordered Region (DISOPRED)
**********************************************************************IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYCL*
Disordered Region (DISEMBL)
MDIDSGLKILNSK******************************SMDKLHI*********SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP
Disordered Region (DISPRO)
*****************************************************************KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q54C25	396	GPN-loop GTPase 1 homolog	yes	no	0.780	0.638	0.620	1e-98
Q9HCN4	374	GPN-loop GTPase 1 OS=Homo	yes	no	0.759	0.657	0.634	7e-94
A4FUD1	373	GPN-loop GTPase 1 OS=Bos	yes	no	0.746	0.648	0.632	1e-92
Q8VCE2	372	GPN-loop GTPase 1 OS=Mus	yes	no	0.759	0.661	0.626	1e-92
P47122	385	GTPase NPA3 OS=Saccharomy	yes	no	0.768	0.646	0.579	2e-90
O42906	367	GTPase npa3 OS=Schizosacc	yes	no	0.783	0.692	0.570	2e-90
P46577	355	GPN-loop GTPase 1 homolog	yes	no	0.824	0.752	0.542	9e-84
Q5A0W6	273	GPN-loop GTPase 3 homolog	N/A	no	0.561	0.666	0.303	2e-20
Q6CQA6	271	GPN-loop GTPase 3 homolog	no	no	0.533	0.638	0.329	2e-20
Q6FSS0	271	GPN-loop GTPase 3 homolog	no	no	0.567	0.678	0.310	5e-20

>sp|Q54C25|GPN1_DICDI GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 157/253 (62%), Positives = 205/253 (81%)

Query: 68  KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYK 127
           +P+ IIV+GMAGSGKTT + R+  H     I GY++NLDPAV  LP+  NIDIRDT+ YK
Sbjct: 33  QPINIIVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVNYK 92

Query: 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187
           EVMKQFNLGPNGGI+TSLNLF+TKFD+V+ ++E+R+  LDY+++DTPGQIE+FTWSASG 
Sbjct: 93  EVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSASGT 152

Query: 188 IITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247
           IITE  AS+FPTV+ YVVDTPR+ +P TFMSNMLYACSI+YK++LP+V+AFNK D+  H 
Sbjct: 153 IITELMASSFPTVLVYVVDTPRTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITNHR 212

Query: 248 FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA 307
           FA EWM DF+ FQ A+++D +Y   LT SLSL L+EFY  L+SVGVS+V G+GI+ +F+ 
Sbjct: 213 FAEEWMSDFDSFQDALTNDPTYMGNLTRSLSLVLEEFYSTLQSVGVSAVDGSGIDEFFEK 272

Query: 308 VEESAQEFMETYK 320
           +  +AQ++ + YK
Sbjct: 273 IGLAAQDYHKYYK 285

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HCN4|GPN1_HUMAN GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=1

 Score =  343 bits (881), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 194/246 (78%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           R PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct: 17  RHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct: 77  KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
            IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct: 137 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
            FA+EWMQDFE FQ A++ + +Y S LT S+SL LDEFY +L+ VGVS+V G G++  F 
Sbjct: 197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query: 307 AVEESA 312
            V  +A
Sbjct: 257 QVTSAA 262

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation. May be involved in nuclear localization of XPA.

Homo sapiens (taxid: 9606)

>sp|A4FUD1|GPN1_BOVIN GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1

 Score =  340 bits (871), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 153/242 (63%), Positives = 191/242 (78%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           R P  ++V+GMAGSGKTTF+ RL  +  S+    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct: 17  RPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct: 77  KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
            IITEA AS+FPT+V YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct: 137 TIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
            FA+EWMQDFE FQ A++ + +Y S LT S+SL LDEFY +L+ VGVS+V G G++  F 
Sbjct: 197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query: 307 AV 308
            V
Sbjct: 257 QV 258

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation. May be involved in nuclear localization of XPA.

Bos taurus (taxid: 9913)

>sp|Q8VCE2|GPN1_MOUSE GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=1

 Score =  340 bits (871), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 154/246 (62%), Positives = 192/246 (78%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
           + PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct: 17  QPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
           KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct: 77  KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTWSASG 136

Query: 187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
            IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct: 137 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
            FA+EWMQDFE FQ A++ + +Y S LT S+SL LDEFY +L+ VGVS+V G G +    
Sbjct: 197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVVGTGFDELCT 256

Query: 307 AVEESA 312
            V  +A
Sbjct: 257 QVTSAA 262

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation. May be involved in nuclear localization of XPA.

Mus musculus (taxid: 10090)

>sp|P47122|NPA3_YEAST GTPase NPA3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NPA3 PE=1 SV=1

 Score =  332 bits (851), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 150/259 (57%), Positives = 194/259 (74%), Gaps = 10/259 (3%)

Query: 72  IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK 131
           II +GMAGSGKTTFM RL  H ++     YV+NLDPAV+ +P+ ANIDIRD+I+YK+VM+
Sbjct: 6   IICIGMAGSGKTTFMQRLNSHLRAEKTPPYVINLDPAVLRVPYGANIDIRDSIKYKKVME 65

Query: 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE 191
            + LGPNG I+TSLNLF+TK D+VI L+E++ D     ++DTPGQIE F WSASGAIITE
Sbjct: 66  NYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAIITE 125

Query: 192 AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALE 251
           +FAS+FPTV+ Y+VDTPR+++P TFMSNMLYACSILYKT+LP+++ FNKTDV + +FA E
Sbjct: 126 SFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVCKADFAKE 185

Query: 252 WMQDFEVFQAAISSDH----------SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI 301
           WM DFE FQAAI  D            Y S+L NS+SL L+EFY  L  VGVSS +G G 
Sbjct: 186 WMTDFESFQAAIKEDQDLNGDNGLGSGYMSSLVNSMSLMLEEFYSQLDVVGVSSFTGDGF 245

Query: 302 EAYFKAVEESAQEFMETYK 320
           + + + V++   E+ + YK
Sbjct: 246 DEFMQCVDKKVDEYDQYYK 264

GTPase essential for viability. May have a role in mitotic exit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|O42906|NPA3_SCHPO GTPase npa3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=npa3 PE=1 SV=1

 Score =  332 bits (851), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 150/263 (57%), Positives = 198/263 (75%), Gaps = 9/263 (3%)

Query: 66  KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR 125
           ++KP  IIVVGMAGSGKTTFM +L  H  S+N   Y++NLDPAV  LP+ ANIDIRDTI 
Sbjct: 5   EKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTIN 64

Query: 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185
           YKEVMKQ+NLGPNGGI+TSLNLF TKFD+V+ ++E+RA  +D++L+DTPGQIEIF WSAS
Sbjct: 65  YKEVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSAS 124

Query: 186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245
           G+II +  AS++PT + YVVDTPR+ +  T+MS+MLYACS+LYK +LPL++ +NK DV  
Sbjct: 125 GSIICDTLASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDVQD 184

Query: 246 HEFALEWMQDFEVFQAAISSDH---------SYTSTLTNSLSLALDEFYKNLKSVGVSSV 296
            EFA +WM DFE FQ A++ D           Y  +L NS+SL L+EFY++L  V  SSV
Sbjct: 185 SEFAKKWMTDFEEFQQAVTKDEGMSSEGATSGYMGSLVNSMSLMLEEFYRHLDFVSCSSV 244

Query: 297 SGAGIEAYFKAVEESAQEFMETY 319
           +G G++ + +AV+   +E+ E Y
Sbjct: 245 TGEGMDDFLEAVKAKVKEYEEEY 267

GTPase that may have a role in mitotic exit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|P46577|GPN1_CAEEL GPN-loop GTPase 1 homolog OS=Caenorhabditis elegans GN=gop-2 PE=1 SV=1

 Score =  310 bits (794), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 193/269 (71%), Gaps = 2/269 (0%)

Query: 52  ESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT 111
           E+S   +  +  N  +KP I+ V+GMAGSGKTTF+ RL     +R    YV+NLDPAV  
Sbjct: 14  EASEEPSPQTGPNVNQKPSIL-VLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSK 72

Query: 112 LPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLV 171
           +P+  N+DIRDT++YKEVMK+F +GPNG I+T LNL  T+FD+VI LI +R+      L+
Sbjct: 73  VPYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLL 132

Query: 172 DTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR 231
           DTPGQIE FTWSASG+IIT++ AS+ PTVV Y+VD+ R+ NP TFMSNMLYACSILY+T+
Sbjct: 133 DTPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTK 192

Query: 232 LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAI-SSDHSYTSTLTNSLSLALDEFYKNLKS 290
           LP ++ FNK D+ +  FAL+WMQDFE F  A+  +  SY + L+ SLSL LDEFY  LK+
Sbjct: 193 LPFIVVFNKADIVKPTFALKWMQDFERFDEALEDARSSYMNDLSRSLSLVLDEFYCGLKT 252

Query: 291 VGVSSVSGAGIEAYFKAVEESAQEFMETY 319
           V VSS +G G E    A++ES + + + Y
Sbjct: 253 VCVSSATGEGFEDVMTAIDESVEAYKKEY 281

Caenorhabditis elegans (taxid: 6239)

>sp|Q5A0W6|GPN3_CANAL GPN-loop GTPase 3 homolog CaO19.3130/CaO19.10642 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CaO19.10642 PE=3 SV=2

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 6/188 (3%)

Query: 72  IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK 131
           ++V+G AG GK+TF + ++ + QS   R +++NLDPA     +   ID++D I  ++VM+
Sbjct: 6   VLVLGPAGVGKSTFCNSMIAYMQSIGRRAHIVNLDPAANPTEYEFTIDVKDLISLQDVME 65

Query: 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSASGAIIT 190
           +  LGPNGG++          D    L E   D+ D Y++ D PGQIE++T       I 
Sbjct: 66  EMELGPNGGLVYCFEFLLNNLD---WLDEEIGDYNDEYLIFDCPGQIELYTHIPVLPTIV 122

Query: 191 EAFAST--FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
               ++  F    TY+++ P   +   F S  L A S +    LP +   +K D+ + E+
Sbjct: 123 RHLQTSLNFNLCATYLLEAPFIIDNSKFFSGALSAMSAMILLELPHINILSKIDLVKDEY 182

Query: 249 ALEWMQDF 256
           + + ++ F
Sbjct: 183 SKKQLKKF 190

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 6/179 (3%)

Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           V ++V+G AG+GK+TF + ++ H QS   R +++NLDPA     +   IDIRD I  ++V
Sbjct: 4   VGVLVLGPAGAGKSTFCNAIISHMQSIGRRAHIVNLDPAAEATKYEFTIDIRDLISLEDV 63

Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSASGAI 188
           M++F LGPNG ++          D    L E   D+ D Y++ D PGQIE++T       
Sbjct: 64  MEEFGLGPNGSLIYCFEYLLNNLD---WLDEEIGDYNDEYLIFDCPGQIELYTHIPVLPT 120

Query: 189 ITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245
           I     +   F    TY+++ P   +   F S  L A S +    LP +   +K D+ +
Sbjct: 121 IVRHLQNQLNFNLCATYLLEAPFVIDTSKFFSGALSAMSAMILLELPHINILSKLDLVK 179

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FSS0|GPN3_CANGA GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0G08294g PE=3 SV=1

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           V ++V+G AG+GK+TF + ++ H Q+   R +++NLDPA     +   IDIRD I   +V
Sbjct: 4   VGLLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPSKYEFTIDIRDLISLDDV 63

Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSASGAI 188
           M++ +LGPNG ++          D    L E   D+ D Y++ D PGQIE++T       
Sbjct: 64  MEELDLGPNGALIYCFEYLMKNLD---WLDEEIGDYNDEYLIFDCPGQIELYTHIPVLPN 120

Query: 189 ITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
           I         F    TY+++ P   +   F S  L A S +    LP +   +K D+ + 
Sbjct: 121 IVRHLQGQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDMIKD 180

Query: 247 EFALEWMQDF 256
           E+  + ++ F
Sbjct: 181 EYGKKKLKRF 190

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
255542247	407	xpa-binding protein, putative [Ricinus c	0.969	0.771	0.787	1e-148
296083223	412	unnamed protein product [Vitis vinifera]	0.981	0.771	0.809	1e-147
147818685	414	hypothetical protein VITISV_029075 [Viti	0.981	0.768	0.809	1e-147
359477206	435	PREDICTED: GPN-loop GTPase 1 homolog [Vi	0.981	0.731	0.809	1e-147
449470212	410	PREDICTED: GPN-loop GTPase 1 homolog [Cu	0.959	0.758	0.773	1e-144
224108772	399	predicted protein [Populus trichocarpa]	0.972	0.789	0.758	1e-142
357443887	396	GPN-loop GTPase [Medicago truncatula] gi	0.959	0.785	0.777	1e-141
388503674	396	unknown [Medicago truncatula]	0.959	0.785	0.773	1e-140
224101525	407	predicted protein [Populus trichocarpa]	0.975	0.776	0.737	1e-139
363807634	405	uncharacterized protein LOC100797318 [Gl	0.919	0.735	0.801	1e-138

>gi|255542247|ref|XP_002512187.1| xpa-binding protein, putative [Ricinus communis] gi|223548731|gb|EEF50221.1| xpa-binding protein, putative [Ricinus communis]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/320 (78%), Positives = 284/320 (88%), Gaps = 6/320 (1%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDID+    +N K  +E    Q++S      K    EKEE++ESMDKL+I++S S  AGS
Sbjct: 1   MDIDTEFDKMNIKSADEGLSMQLDS------KGALGEKEELSESMDKLNIKQSPSEQAGS 54

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI FKRKPV+IIVVGMAGSGKTTF+HRL+ HTQ+ NIRGYV+NLDPAVMTLPF ANIDI
Sbjct: 55  SSITFKRKPVVIIVVGMAGSGKTTFLHRLISHTQATNIRGYVLNLDPAVMTLPFGANIDI 114

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RA+ LDYVLVDTPGQIEIF
Sbjct: 115 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSVIEKRANQLDYVLVDTPGQIEIF 174

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+ YVVDTPRS++P TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 175 TWSASGAIITEAFASTFPTVIAYVVDTPRSSSPTTFMSNMLYACSILYKTRLPLVLAFNK 234

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
           TDVAQH+FALEWM+DFE FQAA+SSDHSY+STLT SLSL LDEFYKNLKSVGVS+VSGAG
Sbjct: 235 TDVAQHQFALEWMEDFEAFQAAVSSDHSYSSTLTQSLSLVLDEFYKNLKSVGVSAVSGAG 294

Query: 301 IEAYFKAVEESAQEFMETYK 320
           +EA+FKAVE SA+E+METYK
Sbjct: 295 MEAFFKAVEASAEEYMETYK 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083223|emb|CBI22859.3| unnamed protein product [Vitis vinifera]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/320 (80%), Positives = 292/320 (91%), Gaps = 2/320 (0%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS  + LN K  E+    QM++ ES+ +K   KEKE+I+ES++KLHIEESSSG AGS
Sbjct: 1   MDIDSDFRNLNLKSPEDDAPMQMDAAESAHIKG--KEKEDISESLEKLHIEESSSGSAGS 58

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI+FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+ NIRGYV+NLDPAV+TLPF ANIDI
Sbjct: 59  SSISFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASNIRGYVINLDPAVLTLPFGANIDI 118

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 119 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIF 178

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+TYVVDTPRSA+P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 179 TWSASGAIITEAFASTFPTVITYVVDTPRSASPVTFMSNMLYACSILYKTRLPLVLAFNK 238

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQH+FALEWM+DFEVF AA+ SDHSYTSTLT SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 239 VDVAQHQFALEWMEDFEVFHAALDSDHSYTSTLTRSLSLVLDEFYKNLQSVGVSAVSGAG 298

Query: 301 IEAYFKAVEESAQEFMETYK 320
           +E +FKA+E SA+E+M +YK
Sbjct: 299 MEEFFKAIEASAEEYMTSYK 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818685|emb|CAN71805.1| hypothetical protein VITISV_029075 [Vitis vinifera]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/320 (80%), Positives = 292/320 (91%), Gaps = 2/320 (0%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS  + LN K  E+    QM++ ES+ +K   KEKE+I+ES++KLHIEESSSG AGS
Sbjct: 1   MDIDSDFRNLNLKSPEDDAPMQMDAAESAHIKG--KEKEDISESLEKLHIEESSSGSAGS 58

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI+FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+ NIRGYV+NLDPAV+TLPF ANIDI
Sbjct: 59  SSISFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASNIRGYVINLDPAVLTLPFGANIDI 118

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 119 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIF 178

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+TYVVDTPRSA+P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 179 TWSASGAIITEAFASTFPTVITYVVDTPRSASPVTFMSNMLYACSILYKTRLPLVLAFNK 238

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQH+FALEWM+DFEVF AA+ SDHSYTSTLT SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 239 VDVAQHQFALEWMEDFEVFHAALDSDHSYTSTLTRSLSLVLDEFYKNLQSVGVSAVSGAG 298

Query: 301 IEAYFKAVEESAQEFMETYK 320
           +E +FKA+E SA+E+M +YK
Sbjct: 299 MEEFFKAIEASAEEYMTSYK 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477206|ref|XP_002279592.2| PREDICTED: GPN-loop GTPase 1 homolog [Vitis vinifera]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/320 (80%), Positives = 292/320 (91%), Gaps = 2/320 (0%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS  + LN K  E+    QM++ ES+ +K   KEKE+I+ES++KLHIEESSSG AGS
Sbjct: 1   MDIDSDFRNLNLKSPEDDAPMQMDAAESAHIKG--KEKEDISESLEKLHIEESSSGSAGS 58

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           SSI+FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+ NIRGYV+NLDPAV+TLPF ANIDI
Sbjct: 59  SSISFKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASNIRGYVINLDPAVLTLPFGANIDI 118

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 119 RDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSMIEKRADQLDYVLVDTPGQIEIF 178

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTV+TYVVDTPRSA+P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 179 TWSASGAIITEAFASTFPTVITYVVDTPRSASPVTFMSNMLYACSILYKTRLPLVLAFNK 238

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQH+FALEWM+DFEVF AA+ SDHSYTSTLT SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 239 VDVAQHQFALEWMEDFEVFHAALDSDHSYTSTLTRSLSLVLDEFYKNLQSVGVSAVSGAG 298

Query: 301 IEAYFKAVEESAQEFMETYK 320
           +E +FKA+E SA+E+M +YK
Sbjct: 299 MEEFFKAIEASAEEYMTSYK 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470212|ref|XP_004152812.1| PREDICTED: GPN-loop GTPase 1 homolog [Cucumis sativus] gi|449525563|ref|XP_004169786.1| PREDICTED: GPN-loop GTPase 1 homolog [Cucumis sativus]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/322 (77%), Positives = 283/322 (87%), Gaps = 11/322 (3%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDK--EKEEITESMDKLHIEESSSGLA 58
           MD+DS     + KPT+++    MESE+S     NDK   KEE+ +S+  L+IEESS   A
Sbjct: 1   MDVDSDA---SHKPTDDAECRPMESEDS-----NDKGKAKEELADSIKNLNIEESSRH-A 51

Query: 59  GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI 118
           GS + NF+RKPVIIIV+GMAGSGKTTF+HRLVCHT + NIRGYVMNLDPAVMTLPF ANI
Sbjct: 52  GSLATNFRRKPVIIIVIGMAGSGKTTFLHRLVCHTHASNIRGYVMNLDPAVMTLPFGANI 111

Query: 119 DIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178
           DIRDT+RYKEVMKQFNLGPNGGILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIE
Sbjct: 112 DIRDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIE 171

Query: 179 IFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF 238
           IFTWSASGAIITEAFASTFPTV+ YVVDTPRS+NP+TFMSNMLYACSILYKTRLP+VL F
Sbjct: 172 IFTWSASGAIITEAFASTFPTVIAYVVDTPRSSNPVTFMSNMLYACSILYKTRLPVVLVF 231

Query: 239 NKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG 298
           NKTDVA+HEFALEWM+DFE FQAA+SSD SYTSTL+ SLSL LDEFYKNLKSVGVS+VSG
Sbjct: 232 NKTDVAKHEFALEWMEDFEAFQAAVSSDSSYTSTLSQSLSLVLDEFYKNLKSVGVSAVSG 291

Query: 299 AGIEAYFKAVEESAQEFMETYK 320
           AG++++FKA+E SA+E+ME YK
Sbjct: 292 AGMDSFFKAIESSAEEYMENYK 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108772|ref|XP_002314963.1| predicted protein [Populus trichocarpa] gi|222864003|gb|EEF01134.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/323 (75%), Positives = 280/323 (86%), Gaps = 8/323 (2%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MDIDS L   + K  +E G + M+ +     K   +EK+E+T+SM+KL++E SSSG AG 
Sbjct: 1   MDIDSKLDKFDVKSGDE-GSSSMQVDS----KGTAEEKDELTDSMNKLNVEASSSGQAGH 55

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
           S   F+RKPVIIIVVGMAGSGKTTF+HRLVCHTQ+  IRGYV+NLDPAVMTLP+ ANIDI
Sbjct: 56  S---FRRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLDPAVMTLPYGANIDI 112

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVI +IE RAD LDYVLVDTPGQIEIF
Sbjct: 113 RDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIENRADQLDYVLVDTPGQIEIF 172

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTVV YVVDTPRS++P+TFMSNMLYACSILYKTRLPLVLAFNK
Sbjct: 173 TWSASGAIITEAFASTFPTVVAYVVDTPRSSSPVTFMSNMLYACSILYKTRLPLVLAFNK 232

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
           TDVAQH+FALEWM+DFE FQAA+ SD SY ST + SLSL LDEFYKNL+SVGVS+VSGAG
Sbjct: 233 TDVAQHQFALEWMEDFEAFQAAMRSDDSYMSTFSQSLSLVLDEFYKNLRSVGVSAVSGAG 292

Query: 301 IEAYFKAVEESAQEFMETYKYCL 323
           ++A+FKA+E SA+E+METYK  L
Sbjct: 293 MDAFFKAIEASAEEYMETYKSDL 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443887|ref|XP_003592221.1| GPN-loop GTPase [Medicago truncatula] gi|355481269|gb|AES62472.1| GPN-loop GTPase [Medicago truncatula]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/323 (77%), Positives = 274/323 (84%), Gaps = 12/323 (3%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MD D+  K  N+ P +    T ME E   + + N K+KEE++ESM KL IE SSSG    
Sbjct: 1   MDADNASK--NANPDD----TPMEMEAGDSQEKN-KQKEELSESMKKLDIEGSSSG---- 49

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
            S NFKRKPVIIIVVGMAGSGKTT MHRLV HT   NIRGYVMNLDPAVMTLP+A+NIDI
Sbjct: 50  -SPNFKRKPVIIIVVGMAGSGKTTLMHRLVTHTHLSNIRGYVMNLDPAVMTLPYASNIDI 108

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 109 RDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIF 168

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTVV YVVDTPR+ NP TFMSNMLYACSILYKTRLPL+LAFNK
Sbjct: 169 TWSASGAIITEAFASTFPTVVAYVVDTPRAENPTTFMSNMLYACSILYKTRLPLILAFNK 228

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQHEFALEWM+DFEVFQAA SSD SYTS LT SLSLALDEFY NL+S GVS+V+GAG
Sbjct: 229 VDVAQHEFALEWMKDFEVFQAAASSDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGAG 288

Query: 301 IEAYFKAVEESAQEFMETYKYCL 323
           IE +FKAVE SA+E+METYK  L
Sbjct: 289 IEGFFKAVEASAEEYMETYKADL 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503674|gb|AFK39903.1| unknown [Medicago truncatula]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/323 (77%), Positives = 273/323 (84%), Gaps = 12/323 (3%)

Query: 1   MDIDSGLKILNSKPTEESGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGS 60
           MD D+  K  N+ P +    T ME E   + + N K+KEE++ESM KL IE SSSG    
Sbjct: 1   MDADNASK--NANPDD----TPMEMEAGDSQEKN-KQKEELSESMKKLDIEGSSSG---- 49

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI 120
            S NFKRKPVIIIVVGMAGSGKTT MHRLV HT   NIRGYVMNLDPAVMTLP+A+NIDI
Sbjct: 50  -SPNFKRKPVIIIVVGMAGSGKTTLMHRLVTHTHLSNIRGYVMNLDPAVMTLPYASNIDI 108

Query: 121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180
           RDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIEIF
Sbjct: 109 RDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIF 168

Query: 181 TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240
           TWSASGAIITEAFASTFPTVV YVVDTPR+ NP TFMSNMLYACSILYKTRLPL+LAFNK
Sbjct: 169 TWSASGAIITEAFASTFPTVVAYVVDTPRAENPTTFMSNMLYACSILYKTRLPLILAFNK 228

Query: 241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG 300
            DVAQHEFAL WM+DFEVFQAA SSD SYTS LT SLSLALDEFY NL+S GVS+V+GAG
Sbjct: 229 VDVAQHEFALVWMKDFEVFQAAASSDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGAG 288

Query: 301 IEAYFKAVEESAQEFMETYKYCL 323
           IE +FKAVE SA+E+METYK  L
Sbjct: 289 IEGFFKAVEASAEEYMETYKADL 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101525|ref|XP_002312316.1| predicted protein [Populus trichocarpa] gi|222852136|gb|EEE89683.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/324 (73%), Positives = 277/324 (85%), Gaps = 8/324 (2%)

Query: 1   MDIDSGLKILNSKPTEE-SGHTQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAG 59
           MDIDS L  L+    +E S  TQ++ +     K   ++K+E+ +SM+ L++E SSSG  G
Sbjct: 1   MDIDSKLNKLDINSGDEASSSTQVQVDS----KGTAEDKDELADSMNNLNVEASSSGQVG 56

Query: 60  SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID 119
            +   FKRKPVIIIVVGMAGSGKTTF+HRLVCHTQ+  IRGYV+NLDPAVMTLP+ ANID
Sbjct: 57  PT---FKRKPVIIIVVGMAGSGKTTFLHRLVCHTQASRIRGYVLNLDPAVMTLPYGANID 113

Query: 120 IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179
           IRDT++YKEVMKQFNLGPNGGILTSLNLF TKFDEVI +IE+RAD LDYVLVDTPGQIEI
Sbjct: 114 IRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVIQVIEKRADQLDYVLVDTPGQIEI 173

Query: 180 FTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239
           FTWSASGAIITEAFASTFPTVV YVVDTPRS++P+TFMSNMLYACSILYKTRLPLVL FN
Sbjct: 174 FTWSASGAIITEAFASTFPTVVAYVVDTPRSSSPVTFMSNMLYACSILYKTRLPLVLVFN 233

Query: 240 KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA 299
           KTDVAQH+FA+EWM+DFE FQ A+ SD SY ST + SLSL LDEFYKNL+SVGVS+VSGA
Sbjct: 234 KTDVAQHQFAIEWMEDFEAFQGAMRSDDSYMSTFSQSLSLVLDEFYKNLRSVGVSAVSGA 293

Query: 300 GIEAYFKAVEESAQEFMETYKYCL 323
           G++A+FKA+E SA+E+METYK  L
Sbjct: 294 GMDAFFKAIEASAEEYMETYKADL 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807634|ref|NP_001242414.1| uncharacterized protein LOC100797318 [Glycine max] gi|255635299|gb|ACU18003.1| unknown [Glycine max]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/303 (80%), Positives = 267/303 (88%), Gaps = 5/303 (1%)

Query: 21  TQMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGS 80
           TQM+S+  S  +A DKEKEE+TE M+KLHIE SSSG   S S N +RKPVII+VVGMAGS
Sbjct: 17  TQMDSD--SGAQAKDKEKEELTEKMNKLHIEGSSSG---SGSSNIRRKPVIILVVGMAGS 71

Query: 81  GKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG 140
           GKTT MHRLVCHT  ++IRGYVMNLDPAVMTLP+AANID+RDT++YKEVMKQFNLGPNGG
Sbjct: 72  GKTTLMHRLVCHTHLKDIRGYVMNLDPAVMTLPYAANIDVRDTVKYKEVMKQFNLGPNGG 131

Query: 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 200
           ILTSLNLF TKFDEVIS+IE+RAD LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV
Sbjct: 132 ILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 191

Query: 201 VTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQ 260
           V YVVDTPRS +P TFMSNMLYACSILYKTRLPL+L FNK DVA H+FALEWM+DFE FQ
Sbjct: 192 VAYVVDTPRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAAHQFALEWMEDFEAFQ 251

Query: 261 AAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYK 320
            A SSD SYTSTLT SLSL LDEFY NLKSVGVS+VSG G+EA+F AVE SA+E+METYK
Sbjct: 252 TAASSDQSYTSTLTQSLSLVLDEFYNNLKSVGVSAVSGVGMEAFFNAVEASAEEYMETYK 311

Query: 321 YCL 323
             L
Sbjct: 312 ADL 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2119093	379	QQT2 "quatre-quart2" [Arabidop	0.901	0.770	0.681	1.7e-107
DICTYBASE|DDB_G0293220	396	gpn1 "GPN-loop GTPase 1" [Dict	0.787	0.643	0.560	1.2e-79
ZFIN|ZDB-GENE-040801-154	400	zgc:100927 "zgc:100927" [Danio	0.780	0.632	0.584	1.6e-79
UNIPROTKB|E2RNQ3	390	LOC475707 "Uncharacterized pro	0.783	0.651	0.578	1.4e-78
UNIPROTKB|F1NUD1	383	XAB1 "Uncharacterized protein"	0.777	0.657	0.578	3.8e-78
UNIPROTKB|F1SEE2	384	GPN1 "Uncharacterized protein"	0.783	0.661	0.566	4.8e-78
UNIPROTKB|B4DQM4	388	GPN1 "cDNA FLJ61157, highly si	0.783	0.654	0.570	6.2e-78
UNIPROTKB|Q9HCN4	374	GPN1 "GPN-loop GTPase 1" [Homo	0.783	0.679	0.570	6.2e-78
MGI|MGI:1921504	372	Gpn1 "GPN-loop GTPase 1" [Mus	0.777	0.677	0.567	9e-77
UNIPROTKB|A4FUD1	373	GPN1 "GPN-loop GTPase 1" [Bos	0.783	0.680	0.559	1.1e-76

TAIR|locus:2119093 QQT2 "quatre-quart2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 203/298 (68%), Positives = 241/298 (80%)

Query:    23 MESEESSALKANDKEKEEITESMDKLHIEEXXXXXXXXXXINFKRKPVIIIVVGMAGSGK 82
             M+  ESS+ +   +E +++ +S+DKL +             NFK+KP+IIIVVGMAGSGK
Sbjct:     1 MDPMESSSEQDIVEESQKLVDSLDKLRVSAASSSS------NFKKKPIIIIVVGMAGSGK 54

Query:    83 TTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142
             T+F+HRLVCHT      GYV+NLDPAVM+LPF ANIDIRDT++YKEVMKQ+NLGPNGGIL
Sbjct:    55 TSFLHRLVCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYKEVMKQYNLGPNGGIL 114

Query:   143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT 202
             TSLNLF TKFDEV+S+IE+RAD LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT
Sbjct:   115 TSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT 174

Query:   203 YVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAA 262
             YVVDTPRS++P+TFMSNMLYACSILYKTRLPLVLAFNKTDVA H+FALEWM+DFEVFQAA
Sbjct:   175 YVVDTPRSSSPITFMSNMLYACSILYKTRLPLVLAFNKTDVADHKFALEWMEDFEVFQAA 234

Query:   263 ISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKAVEESAQEFMETYK 320
             I SD+SY          +L EFY+N++           ++ +FKA+E SA+E+METYK
Sbjct:   235 IQSDNSYTATLANSLSLSLYEFYRNIRSVGVSAISGAGMDGFFKAIEASAEEYMETYK 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

DICTYBASE|DDB_G0293220 gpn1 "GPN-loop GTPase 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 143/255 (56%), Positives = 191/255 (74%)

Query:    66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR 125
             +++P+ IIV+GMAGSGKTT + R+  H     I GY++NLDPAV  LP+  NIDIRDT+ 
Sbjct:    31 EKQPINIIVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVN 90

Query:   126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185
             YKEVMKQFNLGPNGGI+TSLNLF+TKFD+V+ ++E+R+  LDY+++DTPGQIE+FTWSAS
Sbjct:    91 YKEVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSAS 150

Query:   186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245
             G IITE  AS+FPTV+ YVVDTPR+ +P TFMSNMLYACSI+YK++LP+V+AFNK D+  
Sbjct:   151 GTIITELMASSFPTVLVYVVDTPRTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITN 210

Query:   246 HEFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYF 305
             H FA EWM DF+ FQ A+++D +Y           L+EFY  L+           I+ +F
Sbjct:   211 HRFAEEWMSDFDSFQDALTNDPTYMGNLTRSLSLVLEEFYSTLQSVGVSAVDGSGIDEFF 270

Query:   306 KAVEESAQEFMETYK 320
             + +  +AQ++ + YK
Sbjct:   271 EKIGLAAQDYHKYYK 285

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040801-154 zgc:100927 "zgc:100927" [Danio rerio (taxid:7955)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 148/253 (58%), Positives = 186/253 (73%)

Query:    68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYK 127
             KPV +IV+GMAGSGKTTF+ RL  +  S+    YV+NLDPAV  +PF ANIDIRDT+ YK
Sbjct:    43 KPVCLIVLGMAGSGKTTFVQRLTAYLHSKKTPPYVINLDPAVHEVPFPANIDIRDTVNYK 102

Query:   128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187
             EVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE++  + +YVL+DTPGQIE+FTWSASG 
Sbjct:   103 EVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKKQSNHEYVLIDTPGQIEVFTWSASGT 162

Query:   188 IITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247
             IITEA AS+FP VV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H 
Sbjct:   163 IITEALASSFPCVVIYVMDTSRSVNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHS 222

Query:   248 FALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKA 307
             FA+EWMQDFEVFQ A++ + SY           LDEFY NL+           ++  F  
Sbjct:   223 FAVEWMQDFEVFQDALNQETSYISNLTRSMSLVLDEFYTNLRVVGVSAVTGSGLDELFVQ 282

Query:   308 VEESAQEFMETYK 320
             V ++A+E+   Y+
Sbjct:   283 VADAAKEYETEYR 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RNQ3 LOC475707 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 147/254 (57%), Positives = 184/254 (72%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R PV ++V+GMAGSGKTTF+ RL  H  SR    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    33 RPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVHEVPFPANIDIRDTVKY 92

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    93 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 152

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   153 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 212

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   213 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 272

Query:   307 AVEESAQEFMETYK 320
              V  +A+E+   Y+
Sbjct:   273 QVTSAAEEYEREYR 286

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1NUD1 XAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 148/256 (57%), Positives = 185/256 (72%)

Query:    69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
             PV ++V+GMAGSGKTTF+  L  H   +    YV+NLDPAV  LPF ANIDIRDT++YKE
Sbjct:    25 PVCVLVLGMAGSGKTTFVQCLAAHLHGQRCPPYVINLDPAVHELPFPANIDIRDTVKYKE 84

Query:   129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188
             VMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+R +   YV++DTPGQIE+FTWSASG I
Sbjct:    85 VMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKRQNASKYVIIDTPGQIEVFTWSASGTI 144

Query:   189 ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
             ITEA AS+FP+VV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H F
Sbjct:   145 ITEALASSFPSVVVYVMDTSRSTNPITFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSF 204

Query:   249 ALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYF--- 305
             A+EWMQDFE FQ A++ + SY           LDEFY +LK           ++ +F   
Sbjct:   205 AVEWMQDFETFQDALNQETSYVSNLTRSMSLVLDEFYSSLKVVGVSAVLGTGLDDFFVQL 264

Query:   306 -KAVEESAQEFMETYK 320
              KAVEE  +E+   Y+
Sbjct:   265 SKAVEEYEREYRPEYE 280

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|F1SEE2 GPN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 144/254 (56%), Positives = 184/254 (72%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R P  ++V+GMAGSGKTTF+ RL  H  S+    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    28 RAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKY 87

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    88 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASG 147

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPT+V YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   148 TIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 207

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++ +F 
Sbjct:   208 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFV 267

Query:   307 AVEESAQEFMETYK 320
              V  +A+E+   Y+
Sbjct:   268 QVASAAEEYEREYR 281

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|B4DQM4 GPN1 "cDNA FLJ61157, highly similar to XPA-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 145/254 (57%), Positives = 184/254 (72%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    31 RHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKY 90

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    91 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 150

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   151 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 210

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   211 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 270

Query:   307 AVEESAQEFMETYK 320
              V  +A+E+   Y+
Sbjct:   271 QVTSAAEEYEREYR 284

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9HCN4 GPN1 "GPN-loop GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 145/254 (57%), Positives = 184/254 (72%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    17 RHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    77 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   137 TIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query:   307 AVEESAQEFMETYK 320
              V  +A+E+   Y+
Sbjct:   257 QVTSAAEEYEREYR 270

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1921504 Gpn1 "GPN-loop GTPase 1" [Mus musculus (taxid:10090)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 143/252 (56%), Positives = 181/252 (71%)

Query:    69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
             PV ++V+GMAGSGKTTF+ RL  H  ++    YV+NLDPAV  +PF ANIDIRDT++YKE
Sbjct:    19 PVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANIDIRDTVKYKE 78

Query:   129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188
             VMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG I
Sbjct:    79 VMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTWSASGTI 138

Query:   189 ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
             ITEA AS+FPTVV YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H F
Sbjct:   139 ITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSF 198

Query:   249 ALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFKAV 308
             A+EWMQDFE FQ A++ + +Y           LDEFY +L+            +     V
Sbjct:   199 AVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVVGTGFDELCTQV 258

Query:   309 EESAQEFMETYK 320
               +A+E+   Y+
Sbjct:   259 TSAAEEYEREYR 270

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|A4FUD1 GPN1 "GPN-loop GTPase 1" [Bos taurus (taxid:9913)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 142/254 (55%), Positives = 182/254 (71%)

Query:    67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
             R P  ++V+GMAGSGKTTF+ RL  +  S+    YV+NLDPAV  +PF ANIDIRDT++Y
Sbjct:    17 RPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVHEVPFPANIDIRDTVKY 76

Query:   127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186
             KEVMKQ+ LGPNGGI+TSLNLF T+FD+V+  IE+  +   YVL+DTPGQIE+FTWSASG
Sbjct:    77 KEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASG 136

Query:   187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246
              IITEA AS+FPT+V YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H
Sbjct:   137 TIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 196

Query:   247 EFALEWMQDFEVFQAAISSDHSYXXXXXXXXXXALDEFYKNLKXXXXXXXXXXXIEAYFK 306
              FA+EWMQDFE FQ A++ + +Y           LDEFY +L+           ++  F 
Sbjct:   197 SFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFV 256

Query:   307 AVEESAQEFMETYK 320
              V  + +E+   Y+
Sbjct:   257 QVASATEEYEREYR 270

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46577	GPN1_CAEEL	No assigned EC number	0.5427	0.8240	0.7521	yes	no
Q9HCN4	GPN1_HUMAN	No assigned EC number	0.6341	0.7592	0.6577	yes	no
P47122	NPA3_YEAST	3, ., 6, ., -, ., -	0.5791	0.7685	0.6467	yes	no
A4FUD1	GPN1_BOVIN	No assigned EC number	0.6322	0.7469	0.6487	yes	no
Q54C25	GPN1_DICDI	No assigned EC number	0.6205	0.7808	0.6388	yes	no
Q8VCE2	GPN1_MOUSE	No assigned EC number	0.6260	0.7592	0.6612	yes	no
O42906	NPA3_SCHPO	3, ., 6, ., -, ., -	0.5703	0.7839	0.6920	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	5e-96
PRK13768	253	PRK13768, PRK13768, GTPase; Provisional	2e-53
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-23
COG1763	161	COG1763, MobB, Molybdopterin-guanine dinucleotide	4e-04

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score =  283 bits (726), Expect = 5e-96
 Identities = 91/241 (37%), Positives = 128/241 (53%), Gaps = 6/241 (2%)

Query: 74  VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQF 133
           VVG AGSGKTTF+  L           YV+NLDPA   LP+ A+IDIR+ I   +VM+  
Sbjct: 1   VVGPAGSGKTTFVGALSEILPLLGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDD 60

Query: 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF 193
            LGPNG +  +++      D ++  +E   D   Y L DTPGQIE+FT   S A   EA 
Sbjct: 61  GLGPNGALTVAMDFLRITLDWLLEELEYEDD---YYLFDTPGQIELFTHWESLARGVEAL 117

Query: 194 ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWM 253
            ++      Y+VDT R  +P  F S +LYA SI+ +  LP V+A NK D+   EFAL+W 
Sbjct: 118 EASLRLGAVYLVDTRRLTDPSDFFSGLLYALSIMLRLGLPFVVALNKFDLLSLEFALKWF 177

Query: 254 QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ 313
            D +  Q  +  D S    L  ++  ALD FY   + +  +  +G  +E     ++E+ Q
Sbjct: 178 TDPDDLQLLLELDPSK---LNEAIREALDLFYLVPRFLPDARETGESMEDLLTLIDEALQ 234

Query: 314 E 314
            
Sbjct: 235 Y 235

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional

 Score =  175 bits (446), Expect = 2e-53
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 5/245 (2%)

Query: 69  PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
             I+  +G AGSGKTT    L    + +     ++NLDPAV  LP+  + D+RD +  +E
Sbjct: 2   MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTARE 61

Query: 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188
           +MK++ LGPNG ++ S++L  TK DE+   IE      DYVLVDTPGQ+E+F +  SG  
Sbjct: 62  IMKKYGLGPNGALIASVDLLLTKADEIKEEIESLDA--DYVLVDTPGQMELFAFRESGRK 119

Query: 189 ITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF 248
           + E  + +  +VV +++D   +  P  F+S +L A S+  +  LP +   NK D+   E 
Sbjct: 120 LVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEE 179

Query: 249 ---ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF 305
               L+W++D E     +  +      L+  L  AL+E    ++ + VS+ +G G +  +
Sbjct: 180 LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY 239

Query: 306 KAVEE 310
            A++E
Sbjct: 240 AAIQE 244

Length = 253

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 93.9 bits (233), Expect = 8e-23
 Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 14/189 (7%)

Query: 65  FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-----D 119
              K   I+V+G  G GKTT ++RLV           + NLDPA    P+  NI     D
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 120 IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPGQ 176
                 Y+ +  ++  G NG ++   +      DE+          L   D  ++    +
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 177 IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVL 236
           I++F   +S   I           V  +V  P++  P       L   S    T  P V 
Sbjct: 121 IDLFDEQSSSEEILN----QLNREVVLLVLAPKAVLPEVANP-ALLETSAKSLT-GPNVN 174

Query: 237 AFNKTDVAQ 245
              K  + +
Sbjct: 175 ELFKELLRK 183

Length = 219

>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           I+ +VG   SGKTT + +LV   ++R  R   +        L        +DT R+++  
Sbjct: 4   ILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPG----KDTYRHRKAG 59

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLV 171
               +  +        +  T   ++ +++ R    LD VLV
Sbjct: 60  ADQVVVASDHRTAL--MTRTPDRDLDAVLSRLDPLLDLVLV 98

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	100.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	100.0
COG1159	298	Era GTPase [General function prediction only]	99.96
PRK13768	253	GTPase; Provisional	99.94
KOG1533	290	consensus Predicted GTPase [General function predi	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
KOG1534	273	consensus Putative transcription factor FET5 [Tran	99.92
PRK15494	339	era GTPase Era; Provisional	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
PRK00089	292	era GTPase Era; Reviewed	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.89
COG1160	444	Predicted GTPases [General function prediction onl	99.89
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.88
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
KOG0394	210	consensus Ras-related GTPase [General function pre	99.87
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.86
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.86
PRK12299	335	obgE GTPase CgtA; Reviewed	99.85
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.85
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.85
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.85
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.85
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.85
PRK03003	472	GTP-binding protein Der; Reviewed	99.84
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.84
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.84
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.84
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.84
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.84
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.84
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.84
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.84
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.84
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.84
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.84
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.83
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.83
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.83
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.83
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.83
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.83
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.83
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.83
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.83
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.83
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.83
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.83
PRK04213	201	GTP-binding protein; Provisional	99.83
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.82
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.82
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.82
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.82
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.82
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.82
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.82
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.82
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.82
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.82
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.82
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.82
cd00881	189	GTP_translation_factor GTP translation factor fami	99.82
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.82
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.82
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.82
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.82
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.82
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.82
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.82
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.82
PRK12297	424	obgE GTPase CgtA; Reviewed	99.82
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.82
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.82
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.82
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.81
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.81
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.81
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.81
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.81
PTZ00369	189	Ras-like protein; Provisional	99.81
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.81
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.81
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.81
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.81
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.81
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.81
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.81
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.81
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.81
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.81
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.81
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.81
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.8
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.8
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.8
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.8
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.8
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.8
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.8
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.8
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.8
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.8
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.8
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.8
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.8
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.8
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.8
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.8
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.8
PLN03118	211	Rab family protein; Provisional	99.8
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.8
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.8
PLN00223	181	ADP-ribosylation factor; Provisional	99.8
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.79
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.79
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.79
PRK11058	426	GTPase HflX; Provisional	99.79
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.79
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.79
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.79
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.79
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
PTZ00133	182	ADP-ribosylation factor; Provisional	99.79
PLN03110	216	Rab GTPase; Provisional	99.79
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.79
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.79
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.79
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.79
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.79
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.79
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.79
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.79
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.78
PRK05306	787	infB translation initiation factor IF-2; Validated	99.78
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.78
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.78
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.78
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.78
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.78
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.78
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.78
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.77
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.77
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.77
CHL00189	742	infB translation initiation factor 2; Provisional	99.77
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.77
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.77
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.77
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.77
PLN03108	210	Rab family protein; Provisional	99.77
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.77
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.76
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.76
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.76
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.76
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.76
COG0218	200	Predicted GTPase [General function prediction only	99.76
PRK04004	586	translation initiation factor IF-2; Validated	99.76
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.75
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.75
COG0536	369	Obg Predicted GTPase [General function prediction	99.75
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.75
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.75
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.75
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.75
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.75
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.75
KOG1145	683	consensus Mitochondrial translation initiation fac	99.75
PRK09866	741	hypothetical protein; Provisional	99.74
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.74
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.74
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.73
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.73
COG1084	346	Predicted GTPase [General function prediction only	99.73
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.73
PRK12736	394	elongation factor Tu; Reviewed	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.72
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.72
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.72
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.71
PRK12317	425	elongation factor 1-alpha; Reviewed	99.71
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.71
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.71
CHL00071	409	tufA elongation factor Tu	99.71
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.7
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.7
PLN03127	447	Elongation factor Tu; Provisional	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
PRK12735	396	elongation factor Tu; Reviewed	99.69
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.69
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.69
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.69
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.69
COG1100	219	GTPase SAR1 and related small G proteins [General	99.68
PRK05433	600	GTP-binding protein LepA; Provisional	99.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.68
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
PRK00049	396	elongation factor Tu; Reviewed	99.67
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.67
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.67
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.67
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.67
KOG0395	196	consensus Ras-related GTPase [General function pre	99.67
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.66
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.65
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.65
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.65
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.64
PRK10218	607	GTP-binding protein; Provisional	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
PTZ00141	446	elongation factor 1- alpha; Provisional	99.63
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.63
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.63
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.63
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.63
PRK00007	693	elongation factor G; Reviewed	99.63
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.63
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.62
PRK12739	691	elongation factor G; Reviewed	99.62
PRK13351	687	elongation factor G; Reviewed	99.61
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.6
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.6
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.59
PRK09602	396	translation-associated GTPase; Reviewed	99.59
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.58
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.57
PLN00043	447	elongation factor 1-alpha; Provisional	99.57
COG2229	187	Predicted GTPase [General function prediction only	99.57
COG3596	296	Predicted GTPase [General function prediction only	99.57
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.56
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.56
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.56
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.55
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.55
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.53
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.53
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.52
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.51
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.51
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.5
PRK12740	668	elongation factor G; Reviewed	99.48
PRK14845	1049	translation initiation factor IF-2; Provisional	99.46
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.45
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.44
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.43
COG0523	323	Putative GTPases (G3E family) [General function pr	99.43
KOG0410	410	consensus Predicted GTP binding protein [General f	99.41
PLN00023	334	GTP-binding protein; Provisional	99.41
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.4
PTZ00258	390	GTP-binding protein; Provisional	99.4
PTZ00099	176	rab6; Provisional	99.38
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.38
PRK07560	731	elongation factor EF-2; Reviewed	99.38
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.37
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.35
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.33
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.33
cd03112	158	CobW_like The function of this protein family is u	99.31
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.31
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.31
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.3
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.3
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.29
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.28
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.27
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	99.27
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.27
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	99.26
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.26
KOG0090	238	consensus Signal recognition particle receptor, be	99.26
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.25
PRK10416	318	signal recognition particle-docking protein FtsY;	99.25
PRK14974	336	cell division protein FtsY; Provisional	99.23
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.22
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.22
PTZ00416	836	elongation factor 2; Provisional	99.21
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	99.21
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.21
PRK09601	364	GTP-binding protein YchF; Reviewed	99.2
PRK11537	318	putative GTP-binding protein YjiA; Provisional	99.19
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.19
KOG1143	591	consensus Predicted translation elongation factor	99.17
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.17
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.15
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.14
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.14
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.12
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.11
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.09
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.09
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.08
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.06
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.05
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.04
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.02
KOG1673	205	consensus Ras GTPases [General function prediction	99.0
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.99
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	98.99
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.99
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.97
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.96
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	98.94
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.94
KOG0460	449	consensus Mitochondrial translation elongation fac	98.93
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.92
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.91
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.91
cd03114	148	ArgK-like The function of this protein family is u	98.89
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.88
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.88
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.88
KOG2486	320	consensus Predicted GTPase [General function predi	98.88
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.87
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.86
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.86
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.86
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.85
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.84
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.83
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.83
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.81
PRK10867	433	signal recognition particle protein; Provisional	98.81
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.81
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.8
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.79
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.79
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.79
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.78
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.78
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.77
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.76
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.76
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.76
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.75
TIGR00959	428	ffh signal recognition particle protein. This mode	98.74
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.74
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.74
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.73
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.73
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.73
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.72
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.69
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.69
COG4181	228	Predicted ABC-type transport system involved in ly	98.68
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.68
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.67
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.66
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.66
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.65
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.65
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.65
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.65
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.65
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.65
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.65
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.65
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.65
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.64
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.64
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.63
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.63
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.63
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.63
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.63
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.63
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.63
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.62
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.62
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.62
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.61
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.61
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.61
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.61
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.61
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.61
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.61
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.6
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.6
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.6
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.6
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.6
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.6
COG4559	259	ABC-type hemin transport system, ATPase component	98.59
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.59
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.59
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.59
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.59
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.58
PRK12289	352	GTPase RsgA; Reviewed	98.58
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.58
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.58
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.58
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.58
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.57
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.57
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.57
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.57
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.57
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.57
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.57
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.57
KOG0781	587	consensus Signal recognition particle receptor, al	98.56
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.56
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.56
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.56
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.56
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.56
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.56
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.56
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.56
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.56
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.55
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.55
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.55
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.55
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.55
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.54
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.54
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.54
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.54
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.54
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.54
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.54
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.54
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.53
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.53
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.53
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.53
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.53
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.53
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.53
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.53
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.52
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.52
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.52
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.52
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.52
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.52
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.52
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.52
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.52
PRK10908	222	cell division protein FtsE; Provisional	98.52
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.52
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.51
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.51
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.51
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.51
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.51
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.51
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.51
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.5
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.5
COG4988	559	CydD ABC-type transport system involved in cytochr	98.5
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.49
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.49
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.48
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.48
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.48
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.47
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.47
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.47
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.47
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.47
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.47
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.47

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=100.00  E-value=7.7e-43  Score=296.24  Aligned_cols=257  Identities=67%  Similarity=1.117  Sum_probs=246.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+++..|.++|-.|+||||++.+|..+.......++++|.||++.+.|+..++|||+.+.|.++|+.++|||||||.+++
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            45778899999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                      +.|...+.|.+..++......++.++|||||.+.|.|++.+.++...++..+.-+++|+||...+..+..|.++++..+.
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence            99999999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc-CccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS-DHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .+.+..+|+|+|.||+|+.+.+...+|+.+++.+.+.+.. +...+..|.+.+...+++|+...+.+.|||.+|.|++++
T Consensus       176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf  255 (366)
T KOG1532|consen  176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDF  255 (366)
T ss_pred             HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHH
Confidence            9999999999999999999999999999999999999986 778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 020549          305 FKAVEESAQEFMETYKYC  322 (324)
Q Consensus       305 ~~~i~~~~~~~~~~~~~~  322 (324)
                      |..+.+.+.++...|.++
T Consensus       256 ~~av~~~vdEy~~~ykp~  273 (366)
T KOG1532|consen  256 FTAVDESVDEYEEEYKPE  273 (366)
T ss_pred             HHHHHHHHHHHHHHhhhH
Confidence            999999999998888765

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=100.00  E-value=1.7e-33  Score=245.39  Aligned_cols=234  Identities=38%  Similarity=0.619  Sum_probs=176.4

Q ss_pred             EEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHH
Q 020549           74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD  153 (324)
Q Consensus        74 iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  153 (324)
                      |+|++||||||+++++.......++.+.++|.||++...||.+++|+|+.+.+.++|++++|||||+...+++++..++.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d   80 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID   80 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC
Q 020549          154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP  233 (324)
Q Consensus       154 ~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p  233 (324)
                      |..+.+....  ..+.|+|||||.|+|.++.....+.+.+.....-++|+++|+.....+..+....+..+..+.+.+.|
T Consensus        81 ~l~~~i~~~~--~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP  158 (238)
T PF03029_consen   81 WLDEEIEKYE--DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP  158 (238)
T ss_dssp             HHHHHHHHHH---SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred             HHHHHHhhcC--CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence            8887776663  39999999999999999988888888887655578999999988878888888888888888889999


Q ss_pred             eEEEeeccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          234 LVLAFNKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       234 ~ilv~NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      +|.|+||+|+.+  .+...++..+...+...+...   ...+.+++..+++++....+++++|+++++|+++|+..|.+.
T Consensus       159 ~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~---~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  159 HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESD---YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHH---HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            999999999998  444556666666666555444   667777777777666554489999999999999999999876


Q ss_pred             H
Q 020549          312 A  312 (324)
Q Consensus       312 ~  312 (324)
                      +
T Consensus       236 ~  236 (238)
T PF03029_consen  236 N  236 (238)
T ss_dssp             H
T ss_pred             h
Confidence            5

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1159 Era GTPase [General function prediction only]

Probab=99.96  E-value=3.2e-29  Score=217.84  Aligned_cols=174  Identities=26%  Similarity=0.353  Sum_probs=139.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+|+|+||||||||+|+|+|...+.            ++..+.||    |.+++              |+.+    
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisI------------vS~k~QTT----R~~I~--------------GI~t----   50 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RNRIR--------------GIVT----   50 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEe------------ecCCcchh----hhhee--------------EEEE----
Confidence            55679999999999999999999997764            78888888    55552              6665    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhcc--CCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST--FPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~--~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                     ..+.+++|+||||++++  ++.++..|.+.+..+  .+|+++||||+.+++...+.+.     +.
T Consensus        51 ---------------~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i-----l~  108 (298)
T COG1159          51 ---------------TDNAQIIFVDTPGIHKP--KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI-----LE  108 (298)
T ss_pred             ---------------cCCceEEEEeCCCCCCc--chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH-----HH
Confidence                           34789999999999998  788888888887764  4799999999999888776442     24


Q ss_pred             HHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .++....|+++++||+|..+++.. ....+...                         ...++..++|+||++|.|++.|
T Consensus       109 ~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~-------------------------~~~~f~~ivpiSA~~g~n~~~L  163 (298)
T COG1159         109 QLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLK-------------------------KLLPFKEIVPISALKGDNVDTL  163 (298)
T ss_pred             HHhhcCCCeEEEEEccccCCcHHHHHHHHHHHH-------------------------hhCCcceEEEeeccccCCHHHH
Confidence            455567899999999999988752 22222222                         2345679999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 020549          305 FKAVEESAQEFMETYKYC  322 (324)
Q Consensus       305 ~~~i~~~~~~~~~~~~~~  322 (324)
                      .+.+..++++++++|+.+
T Consensus       164 ~~~i~~~Lpeg~~~yp~d  181 (298)
T COG1159         164 LEIIKEYLPEGPWYYPED  181 (298)
T ss_pred             HHHHHHhCCCCCCcCChh
Confidence            999999999999888764

>PRK13768 GTPase; Provisional

Probab=99.94  E-value=1.1e-25  Score=198.62  Aligned_cols=243  Identities=33%  Similarity=0.554  Sum_probs=185.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ...+++.|++|+||||++..+.......+..+.+++.||.....++.+..++++.+...+++...++++++..+.+.+.+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~   81 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL   81 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence            35789999999999999999998877778899999999998888888888899999999999999999999887766656


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                      .....+....+...  +.++++|||||+.+++.++.....+.+.+....+++++|++|++....+.++.......+....
T Consensus        82 ~~~~~~l~~~l~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~  159 (253)
T PRK13768         82 LTKADEIKEEIESL--DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL  159 (253)
T ss_pred             HHHHHHHHHHHHhc--CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH
Confidence            66666666666533  4599999999999987777777777777765447999999999887766654433222222223


Q ss_pred             hcCCCeEEEeeccccCChHhHHH---HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALE---WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ..++|+++|+||+|+.+......   ..+.+..+...+........++..++...+..+....+++++||++++|+++|+
T Consensus       160 ~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~  239 (253)
T PRK13768        160 RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY  239 (253)
T ss_pred             HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH
Confidence            56899999999999998754432   333333343444333222256666666666666556789999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      +.|.+.++
T Consensus       240 ~~I~~~l~  247 (253)
T PRK13768        240 AAIQEVFC  247 (253)
T ss_pred             HHHHHHcC
Confidence            99998875

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=99.93  E-value=5.5e-25  Score=183.67  Aligned_cols=238  Identities=23%  Similarity=0.380  Sum_probs=193.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +-.+||||||+||||.++-+..-....++.+.++|.||+....+|.+.++++..+++.++|+++++||||+..++++++.
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~   82 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE   82 (290)
T ss_pred             cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHH
Confidence            34689999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                      .++.|....++.  ....+.++|+|||.++|+++.....+.+.+++ ...-++|-++|+---.++..+++..+..+..+.
T Consensus        83 ~~idwl~~~l~~--~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl  160 (290)
T KOG1533|consen   83 ANIDWLLEKLKP--LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML  160 (290)
T ss_pred             hhhHHHHHHhhh--ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH
Confidence            999999888875  36789999999999999877766556665554 445788899998877788889999888889999


Q ss_pred             hcCCCeEEEeeccccCChHh-------HHHHHHhHHHHHHHHhcCc--cchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          229 KTRLPLVLAFNKTDVAQHEF-------ALEWMQDFEVFQAAISSDH--SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                      ....|.|-|+.|+|+...-.       ...-.+++..|...+..++  +++..|.+++..+++.|. -+.+.+.+--..+
T Consensus       161 ~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~-LVSF~~L~v~nke  239 (290)
T KOG1533|consen  161 HMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFN-LVSFEVLDVDNKE  239 (290)
T ss_pred             hhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccC-ceeeEEeeccCHH
Confidence            99999999999999987533       2223445566666666655  468899999998887763 3455555554555


Q ss_pred             ChHHHHHHHHH
Q 020549          300 GIEAYFKAVEE  310 (324)
Q Consensus       300 gv~~l~~~i~~  310 (324)
                      .+-.|...|.+
T Consensus       240 Sml~l~~~IDk  250 (290)
T KOG1533|consen  240 SMLRLQQTIDK  250 (290)
T ss_pred             HHHHHHHHHHh
Confidence            55555555544

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=9.5e-25  Score=195.12  Aligned_cols=170  Identities=21%  Similarity=0.235  Sum_probs=114.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|+||||||||+|+|++.....            ++..+.+|    +..+              .|+..       
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~------------vs~~~~TT----r~~i--------------~~i~~-------   44 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISI------------TSPKAQTT----RNRI--------------SGIHT-------   44 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEee------------cCCCCCcc----cCcE--------------EEEEE-------
Confidence            69999999999999999999976542            44555554    2111              02211       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                  ..+.+++||||||+++.  .......+.+.+..  ..+|+++||+|++.......++      +..+.
T Consensus        45 ------------~~~~qii~vDTPG~~~~--~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i------~~~l~  104 (270)
T TIGR00436        45 ------------TGASQIIFIDTPGFHEK--KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFV------LTKLQ  104 (270)
T ss_pred             ------------cCCcEEEEEECcCCCCC--cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHH------HHHHH
Confidence                        12457899999998765  22233333332222  3579999999998754433222      23344


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+............+.                         ....+.+++++||++|.|+++|++.|
T Consensus       105 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~v~~iSA~~g~gi~~L~~~l  159 (270)
T TIGR00436       105 NLKRPVVLTRNKLDNKFKDKLLPLIDKYA-------------------------ILEDFKDIVPISALTGDNTSFLAAFI  159 (270)
T ss_pred             hcCCCEEEEEECeeCCCHHHHHHHHHHHH-------------------------hhcCCCceEEEecCCCCCHHHHHHHH
Confidence            56899999999999986543322221111                         12234589999999999999999999


Q ss_pred             HHHHHHHHHhhhcc
Q 020549          309 EESAQEFMETYKYC  322 (324)
Q Consensus       309 ~~~~~~~~~~~~~~  322 (324)
                      .+.+++.++.|+.+
T Consensus       160 ~~~l~~~~~~~~~~  173 (270)
T TIGR00436       160 EVHLPEGPFRYPED  173 (270)
T ss_pred             HHhCCCCCCCCCCc
Confidence            99999988888654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=99.92  E-value=1.4e-24  Score=178.44  Aligned_cols=243  Identities=26%  Similarity=0.402  Sum_probs=198.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .-+.++|+.|+||||+++.+..+....++...++|.||+.....+...+|+|+.+.++++|+.+.+|||||.+.+++++-
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~   83 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLL   83 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                      .++.|....+  ..-.-+++++|+|||.+.|++......+.+.+.+ .+.-+++|++|+.--.+...|++..+.++..+.
T Consensus        84 ~NldwL~~~~--Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi  161 (273)
T KOG1534|consen   84 ENLDWLEEEI--GDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI  161 (273)
T ss_pred             HHHHHHHhhc--cCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH
Confidence            8888776522  2336789999999999999998888888888876 667899999999888888889999999998999


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHH----HHHH--HHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFE----VFQA--AISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~----~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      ...+|.|-|++|+||.+....+++.+.+.    .+..  .+.-...++.+|.+.+..++.+| .-+.++|.-....+.|+
T Consensus       162 ~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~-~Mv~FlPl~~~~eeSi~  240 (273)
T KOG1534|consen  162 SLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDY-SMVNFLPLDSSDEESIN  240 (273)
T ss_pred             HhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccc-cceeeeecCCCCHHHHH
Confidence            99999999999999998743222221111    1111  11111235777888888777665 34789999988889999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      .++..|...+..+
T Consensus       241 ~iL~~ID~aiQy~  253 (273)
T KOG1534|consen  241 IILSYIDDAIQYG  253 (273)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998877643

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=5.8e-24  Score=195.38  Aligned_cols=175  Identities=21%  Similarity=0.237  Sum_probs=115.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+|+|++..+..            ++..+.+|    ++.+              .++..   
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i------------vs~k~~tT----r~~~--------------~~~~~---   96 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI------------VTPKVQTT----RSII--------------TGIIT---   96 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceee------------ccCCCCCc----cCcE--------------EEEEE---
Confidence            355689999999999999999999876532            22233332    1110              01111   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                      ..+.+++||||||+++++  ......+.+....  ..+|+++||+|+..++...+.+     .+
T Consensus        97 ----------------~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il  153 (339)
T PRK15494         97 ----------------LKDTQVILYDTPGIFEPK--GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----IL  153 (339)
T ss_pred             ----------------eCCeEEEEEECCCcCCCc--ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HH
Confidence                            225688999999997652  2233333332211  3579999999998877665422     12


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+...+.|.|+|+||+|+.... ..+..+.+.                         ....+.+++++||++|.|+++|
T Consensus       154 ~~l~~~~~p~IlViNKiDl~~~~-~~~~~~~l~-------------------------~~~~~~~i~~iSAktg~gv~eL  207 (339)
T PRK15494        154 DKLRSLNIVPIFLLNKIDIESKY-LNDIKAFLT-------------------------ENHPDSLLFPISALSGKNIDGL  207 (339)
T ss_pred             HHHHhcCCCEEEEEEhhcCcccc-HHHHHHHHH-------------------------hcCCCcEEEEEeccCccCHHHH
Confidence            33444567889999999986431 111111110                         1223467999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccC
Q 020549          305 FKAVEESAQEFMETYKYCL  323 (324)
Q Consensus       305 ~~~i~~~~~~~~~~~~~~~  323 (324)
                      ++.|.+.++++++.|+.+.
T Consensus       208 ~~~L~~~l~~~~~~~~~~~  226 (339)
T PRK15494        208 LEYITSKAKISPWLYAEDD  226 (339)
T ss_pred             HHHHHHhCCCCCCCCCCCC
Confidence            9999999999999997764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=3.6e-24  Score=173.44  Aligned_cols=156  Identities=26%  Similarity=0.339  Sum_probs=100.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.||+|||||+|+|++....             +.++|++|.    +.              ..|.+.      
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~-------------v~n~pG~Tv----~~--------------~~g~~~------   43 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK-------------VGNWPGTTV----EK--------------KEGIFK------   43 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE-------------EEESTTSSS----EE--------------EEEEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce-------------ecCCCCCCe----ee--------------eeEEEE------
Confidence            46999999999999999999998643             455555541    10              012222      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   ..+..+.|+|+||+......+.......+++.....|++++|+|+...       ...+..+..+..
T Consensus        44 -------------~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l-------~r~l~l~~ql~e  103 (156)
T PF02421_consen   44 -------------LGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL-------ERNLYLTLQLLE  103 (156)
T ss_dssp             -------------ETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH-------HHHHHHHHHHHH
T ss_pred             -------------ecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH-------HHHHHHHHHHHH
Confidence                         125688999999987763333333344445555678999999999642       222333455667


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      .++|+|+|+||+|+.......   -+...|.+                      .. ++|++++||++|+|+++|++.|
T Consensus       104 ~g~P~vvvlN~~D~a~~~g~~---id~~~Ls~----------------------~L-g~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  104 LGIPVVVVLNKMDEAERKGIE---IDAEKLSE----------------------RL-GVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TTSSEEEEEETHHHHHHTTEE---E-HHHHHH----------------------HH-TS-EEEEBTTTTBTHHHHHHHH
T ss_pred             cCCCEEEEEeCHHHHHHcCCE---ECHHHHHH----------------------Hh-CCCEEEEEeCCCcCHHHHHhhC
Confidence            899999999999987654221   11222211                      11 5899999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=4.5e-23  Score=186.51  Aligned_cols=174  Identities=26%  Similarity=0.345  Sum_probs=115.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+|+|+||||||||+|+|++.....            ++..+.++    +..+              .++..    
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~------------vs~~~~tt----~~~i--------------~~i~~----   49 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISI------------VSPKPQTT----RHRI--------------RGIVT----   49 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceee------------cCCCCCcc----cccE--------------EEEEE----
Confidence            45679999999999999999999875432            23333333    1110              01211    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                     ..+.++.||||||+.+.  .......+......  ..+|+++||+|+...+.....+     .+.
T Consensus        50 ---------------~~~~qi~~iDTPG~~~~--~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~-----i~~  107 (292)
T PRK00089         50 ---------------EDDAQIIFVDTPGIHKP--KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEF-----ILE  107 (292)
T ss_pred             ---------------cCCceEEEEECCCCCCc--hhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHH-----HHH
Confidence                           12468999999998775  22333333333322  4579999999998855443321     123


Q ss_pred             HHhhcCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .+...+.|+++|+||+|+.. ........+.+.                         ...++.+++++||++|.|+++|
T Consensus       108 ~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~-------------------------~~~~~~~i~~iSA~~~~gv~~L  162 (292)
T PRK00089        108 KLKKVKTPVILVLNKIDLVKDKEELLPLLEELS-------------------------ELMDFAEIVPISALKGDNVDEL  162 (292)
T ss_pred             HHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHH-------------------------hhCCCCeEEEecCCCCCCHHHH
Confidence            34455789999999999984 343333322222                         2234578999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 020549          305 FKAVEESAQEFMETYKYC  322 (324)
Q Consensus       305 ~~~i~~~~~~~~~~~~~~  322 (324)
                      ++.|.+.+++.++.|..+
T Consensus       163 ~~~L~~~l~~~~~~y~~~  180 (292)
T PRK00089        163 LDVIAKYLPEGPPYYPED  180 (292)
T ss_pred             HHHHHHhCCCCCCCCCCC
Confidence            999999999888877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.89  E-value=2.1e-22  Score=184.64  Aligned_cols=206  Identities=18%  Similarity=0.254  Sum_probs=136.7

Q ss_pred             chhhhhhhhhhhhhhhHhhhhhhhhhhhccccCCCCCCCccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           24 ESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      -..|++|.++.....+++...+.  ..+...        ......+++|+|+|.||+|||||+|+|+++....       
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~--~~e~~~--------~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I-------  205 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP--PDEEEE--------EEEETDPIKIAIIGRPNVGKSSLINAILGEERVI-------  205 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC--Cccccc--------ccccCCceEEEEEeCCCCCchHHHHHhccCceEE-------
Confidence            34566777666655555544432  111111        0001367999999999999999999999997764       


Q ss_pred             ccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh--
Q 020549          104 NLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--  181 (324)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~--  181 (324)
                           +++.+++|    |+.+...             +.                    ..+..+.|+||+|..+...  
T Consensus       206 -----v~~~aGTT----RD~I~~~-------------~e--------------------~~~~~~~liDTAGiRrk~ki~  243 (444)
T COG1160         206 -----VSDIAGTT----RDSIDIE-------------FE--------------------RDGRKYVLIDTAGIRRKGKIT  243 (444)
T ss_pred             -----ecCCCCcc----ccceeee-------------EE--------------------ECCeEEEEEECCCCCcccccc
Confidence                 67777777    5443210             00                    2367899999999876310  


Q ss_pred             hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChH--hHHHHHHhHHH
Q 020549          182 WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEV  258 (324)
Q Consensus       182 ~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~  258 (324)
                      .+.......+.+.. ..+|++++|+|+.+++..++     ...+......+.++|+|+||||+++.+  ....+.+.+..
T Consensus       244 e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-----~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~  318 (444)
T COG1160         244 ESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-----LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR  318 (444)
T ss_pred             cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-----HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH
Confidence            00000112222222 45799999999999998887     444567778899999999999998862  22233223321


Q ss_pred             HHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          259 FQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       259 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                         .+                   ++..+++++++||++|.|+..+|+.+.+.....
T Consensus       319 ---~l-------------------~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         319 ---KL-------------------PFLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             ---Hh-------------------ccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence               11                   566789999999999999999999998876543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.89  E-value=1.9e-22  Score=184.97  Aligned_cols=160  Identities=25%  Similarity=0.258  Sum_probs=116.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +.|+|+|+||||||||+|+|++...+.            |+++|+.|    ||++..              .+.      
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI------------V~D~pGvT----RDr~y~--------------~~~------   47 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAI------------VSDTPGVT----RDRIYG--------------DAE------   47 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeE------------eecCCCCc----cCCccc--------------eeE------
Confidence            679999999999999999999986653            67777777    766521              110      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   +.+..+.++||+|+.... ...+...+......  ..+|+++||||+..+..+.+..     .+..+
T Consensus        48 -------------~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-----ia~~L  108 (444)
T COG1160          48 -------------WLGREFILIDTGGLDDGD-EDELQELIREQALIAIEEADVILFVVDGREGITPADEE-----IAKIL  108 (444)
T ss_pred             -------------EcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHH
Confidence                         336779999999987531 12234444443322  4589999999999999988843     23556


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+|+|+||+|-...+.   ...++.                          -+...+++++||.+|.|+.+|++.
T Consensus       109 r~~~kpviLvvNK~D~~~~e~---~~~efy--------------------------slG~g~~~~ISA~Hg~Gi~dLld~  159 (444)
T COG1160         109 RRSKKPVILVVNKIDNLKAEE---LAYEFY--------------------------SLGFGEPVPISAEHGRGIGDLLDA  159 (444)
T ss_pred             HhcCCCEEEEEEcccCchhhh---hHHHHH--------------------------hcCCCCceEeehhhccCHHHHHHH
Confidence            677799999999999874331   111111                          124578999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      +.+.++
T Consensus       160 v~~~l~  165 (444)
T COG1160         160 VLELLP  165 (444)
T ss_pred             HHhhcC
Confidence            999985

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.8e-22  Score=164.64  Aligned_cols=167  Identities=18%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...+||+|+|.+|||||.|+.||....+...+..++ +.|.           .++..                       
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI-GVDf-----------~~rt~-----------------------   51 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI-GVDF-----------KIRTV-----------------------   51 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhccee-eeEE-----------EEEEe-----------------------
Confidence            456899999999999999999999998887654443 1111           11110                       


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                   ...++..+++||||+||++|.      .++..+.+.+.+-++||.|...+++.....|..++   +.
T Consensus        52 -------------e~~gk~iKlQIWDTAGQERFr------tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei---~~  109 (205)
T KOG0084|consen   52 -------------ELDGKTIKLQIWDTAGQERFR------TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI---DR  109 (205)
T ss_pred             -------------eecceEEEEEeeeccccHHHh------hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh---hh
Confidence                         001456789999999999983      35666677777778888888888998888885544   66


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc-eeeeccccCCChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-iv~vSA~~g~gv~~l~  305 (324)
                      ....+.|.++|+||||+.+...+..  +..+.+              +.+         .+.+ ++++|||.+.||++.|
T Consensus       110 ~~~~~v~~lLVGNK~Dl~~~~~v~~--~~a~~f--------------a~~---------~~~~~f~ETSAK~~~NVe~~F  164 (205)
T KOG0084|consen  110 YASENVPKLLVGNKCDLTEKRVVST--EEAQEF--------------ADE---------LGIPIFLETSAKDSTNVEDAF  164 (205)
T ss_pred             hccCCCCeEEEeeccccHhheecCH--HHHHHH--------------HHh---------cCCcceeecccCCccCHHHHH
Confidence            7777899999999999987643210  011111              111         1345 8999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          306 KAVEESAQEF  315 (324)
Q Consensus       306 ~~i~~~~~~~  315 (324)
                      ..|...+...
T Consensus       165 ~~la~~lk~~  174 (205)
T KOG0084|consen  165 LTLAKELKQR  174 (205)
T ss_pred             HHHHHHHHHh
Confidence            9999888653

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.4e-22  Score=162.39  Aligned_cols=166  Identities=16%  Similarity=0.209  Sum_probs=117.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..|++++|..+||||||+++++...|...+..+|     +++-...+-  .+.                          
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI-----GiDFlskt~--~l~--------------------------   67 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI-----GIDFLSKTM--YLE--------------------------   67 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhccccccee-----eeEEEEEEE--EEc--------------------------
Confidence            34889999999999999999999999988776655     111111000  000                          


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     +..+.+++|||+||++|      ...+..+++.+...+++|.+....++...+.|.+..   ..-
T Consensus        68 ---------------d~~vrLQlWDTAGQERF------rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv---~~e  123 (221)
T KOG0094|consen   68 ---------------DRTVRLQLWDTAGQERF------RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDV---RRE  123 (221)
T ss_pred             ---------------CcEEEEEEEecccHHHH------hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHH---Hhc
Confidence                           33678999999999998      235555666666678888888889998888885433   333


Q ss_pred             hhc-CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          228 YKT-RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       228 ~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ... +.-++||+||.||++...+..  ++-              ...++++         ++.++++||+.|.||..||.
T Consensus       124 ~gs~~viI~LVGnKtDL~dkrqvs~--eEg--------------~~kAkel---------~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen  124 RGSDDVIIFLVGNKTDLSDKRQVSI--EEG--------------ERKAKEL---------NAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             cCCCceEEEEEcccccccchhhhhH--HHH--------------HHHHHHh---------CcEEEEecccCCCCHHHHHH
Confidence            333 366788999999998754311  111              1111111         46899999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          307 AVEESAQEF  315 (324)
Q Consensus       307 ~i~~~~~~~  315 (324)
                      .|...++..
T Consensus       179 rIaa~l~~~  187 (221)
T KOG0094|consen  179 RIAAALPGM  187 (221)
T ss_pred             HHHHhccCc
Confidence            999988754

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.9e-21  Score=180.97  Aligned_cols=176  Identities=21%  Similarity=0.232  Sum_probs=112.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      -|+|+|.||||||||+|+|++...             .++.+|+||    +.              ++-|++..      
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-------------~vs~~p~TT----~~--------------p~~Giv~~------  203 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-------------KVADYPFTT----LV--------------PNLGVVRV------  203 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-------------cccCCCCCc----cC--------------cEEEEEEe------
Confidence            599999999999999999998643             266777776    22              12233321      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                  .....++|+||||+.+.... ..++..+.+.+  ..+|++++|+|+...  ......+..++..+..+
T Consensus       204 ------------~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~  269 (390)
T PRK12298        204 ------------DDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ERCRVLLHLIDIAPIDGSDPVENARIIINELEKY  269 (390)
T ss_pred             ------------CCCcEEEEEeCCCccccccchhhHHHHHHHHH--HhCCEEEEEeccCcccccChHHHHHHHHHHHHhh
Confidence                        11235999999999764211 11333444433  346899999997622  11212122222222222


Q ss_pred             hh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhcc-CceeeeccccCCChHHH
Q 020549          228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 ~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~iv~vSA~~g~gv~~l  304 (324)
                      ..  .++|+|+|+||+|+.......+.+..+.                         ..... .+++++||+++.|+++|
T Consensus       270 ~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~-------------------------~~~~~~~~Vi~ISA~tg~GIdeL  324 (390)
T PRK12298        270 SPKLAEKPRWLVFNKIDLLDEEEAEERAKAIV-------------------------EALGWEGPVYLISAASGLGVKEL  324 (390)
T ss_pred             hhhhcCCCEEEEEeCCccCChHHHHHHHHHHH-------------------------HHhCCCCCEEEEECCCCcCHHHH
Confidence            11  4689999999999986543322222211                         11122 37999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 020549          305 FKAVEESAQEFMETYKYC  322 (324)
Q Consensus       305 ~~~i~~~~~~~~~~~~~~  322 (324)
                      ++.|.+.+++.++.|+.+
T Consensus       325 l~~I~~~L~~~~~~~~~~  342 (390)
T PRK12298        325 CWDLMTFIEENPREEAEE  342 (390)
T ss_pred             HHHHHHHhhhCcccCCcc
Confidence            999999999888877654

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.87  E-value=2e-22  Score=162.17  Aligned_cols=173  Identities=20%  Similarity=0.234  Sum_probs=115.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+...+|+|+|.+|+|||||+|++....|...+..+|-     ..-.+..-.+|                          
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg-----adFltKev~Vd--------------------------   54 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG-----ADFLTKEVQVD--------------------------   54 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc-----hhheeeEEEEc--------------------------
Confidence            34568999999999999999999999999887766551     11111110111                          


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       .....++||||+||++|.   .++   ...++.+.+.+++|.|+...++.....|+.++....
T Consensus        55 -----------------~~~vtlQiWDTAGQERFq---sLg---~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa  111 (210)
T KOG0394|consen   55 -----------------DRSVTLQIWDTAGQERFQ---SLG---VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQA  111 (210)
T ss_pred             -----------------CeEEEEEEEecccHHHhh---hcc---cceecCCceEEEEeecCChhhhccHHHHHHHHHHhc
Confidence                             224578999999999972   121   122334555677778889999999998886553211


Q ss_pred             -HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 -ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 -~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                       .-.....|+||++||+|+.....+..-.+..+              .++        .-..++|++++|||.+.||++.
T Consensus       112 ~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq--------------~WC--------~s~gnipyfEtSAK~~~NV~~A  169 (210)
T KOG0394|consen  112 SPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQ--------------TWC--------KSKGNIPYFETSAKEATNVDEA  169 (210)
T ss_pred             CCCCCCcccEEEEcccccCCCCccceeeHHHHH--------------HHH--------HhcCCceeEEecccccccHHHH
Confidence             11235689999999999976321111111111              111        1235789999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      |+.+.+....
T Consensus       170 Fe~ia~~aL~  179 (210)
T KOG0394|consen  170 FEEIARRALA  179 (210)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=2.1e-21  Score=178.55  Aligned_cols=165  Identities=19%  Similarity=0.271  Sum_probs=118.7

Q ss_pred             cccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549           64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (324)
Q Consensus        64 ~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (324)
                      ...+.+.+++|+|+||||||||+|+|++...++            |+++|+||    ||.+..             .+. 
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AI------------VTdI~GTT----RDviee-------------~i~-  261 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAI------------VTDIAGTT----RDVIEE-------------DIN-  261 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceE------------ecCCCCCc----cceEEE-------------EEE-
Confidence            346789999999999999999999999987764            88999998    654310             000 


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhH-HHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                         ..+..+.++||+|+.+.  ..... ..+.+.... ..+|+++||+|++......+...  +
T Consensus       262 -------------------i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~--~  318 (454)
T COG0486         262 -------------------LNGIPVRLVDTAGIRET--DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL--I  318 (454)
T ss_pred             -------------------ECCEEEEEEecCCcccC--ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH--H
Confidence                               23788999999999874  22221 223333333 45899999999998755444221  1


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                         . ....++|+++|+||+|+.........                              ......+++.+||++|+|+
T Consensus       319 ---~-~~~~~~~~i~v~NK~DL~~~~~~~~~------------------------------~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         319 ---E-LLPKKKPIIVVLNKADLVSKIELESE------------------------------KLANGDAIISISAKTGEGL  364 (454)
T ss_pred             ---H-hcccCCCEEEEEechhcccccccchh------------------------------hccCCCceEEEEecCccCH
Confidence               2 34567999999999999986532111                              1123457999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQEF  315 (324)
Q Consensus       302 ~~l~~~i~~~~~~~  315 (324)
                      +.|.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999887654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.3e-21  Score=159.47  Aligned_cols=167  Identities=16%  Similarity=0.213  Sum_probs=118.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|.++|.+|||||+|+-++....|...+..++ +.|...           +.                  +..  
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi-GIDFk~-----------kt------------------i~l--   56 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI-GIDFKI-----------KT------------------IEL--   56 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE-EEEEEE-----------EE------------------EEe--
Confidence            4567899999999999999999999998876554333 111100           10                  000  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                      .+..+.+++|||+||++|..      +...+++.+..-++||.|....+++....|...+   .
T Consensus        57 ----------------~g~~i~lQiWDtaGQerf~t------i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I---~  111 (207)
T KOG0078|consen   57 ----------------DGKKIKLQIWDTAGQERFRT------ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNI---D  111 (207)
T ss_pred             ----------------CCeEEEEEEEEcccchhHHH------HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHH---H
Confidence                            02356889999999999833      6666777766667777777777888777775444   5


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|.+||+||+|+.....+.  .+.              +..|+.++         +++++++|||+|.||++.|
T Consensus       112 e~a~~~v~~~LvGNK~D~~~~R~V~--~e~--------------ge~lA~e~---------G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen  112 EHASDDVVKILVGNKCDLEEKRQVS--KER--------------GEALAREY---------GIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             hhCCCCCcEEEeecccccccccccc--HHH--------------HHHHHHHh---------CCeEEEccccCCCCHHHHH
Confidence            6666789999999999998743220  111              22233322         5889999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      -.|.+.+..
T Consensus       167 ~~La~~i~~  175 (207)
T KOG0078|consen  167 LSLARDILQ  175 (207)
T ss_pred             HHHHHHHHh
Confidence            999998764

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=3.1e-22  Score=162.65  Aligned_cols=166  Identities=17%  Similarity=0.241  Sum_probs=111.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..+||+|+|..|||||||+-|+....|.....++|     +..-++.+                         +..    
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI-----GaaF~tkt-------------------------v~~----   49 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI-----GAAFLTKT-------------------------VTV----   49 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCcccccccccc-----ccEEEEEE-------------------------EEe----
Confidence            45789999999999999999999998876433332     01000000                         000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                    ....+++.||||+||++|.   .+..   .+++.+.+.+++|.|+..+++.....|...+   ...
T Consensus        50 --------------~~~~ikfeIWDTAGQERy~---slap---MYyRgA~AAivvYDit~~~SF~~aK~WvkeL---~~~  106 (200)
T KOG0092|consen   50 --------------DDNTIKFEIWDTAGQERYH---SLAP---MYYRGANAAIVVYDITDEESFEKAKNWVKEL---QRQ  106 (200)
T ss_pred             --------------CCcEEEEEEEEcCCccccc---cccc---ceecCCcEEEEEEecccHHHHHHHHHHHHHH---Hhh
Confidence                          0224688999999999962   1111   2334455668888888888887777775444   444


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++-+.||+||+||.....+  ..++...              +++.         .+..++++|||+|.||+++|..
T Consensus       107 ~~~~~vialvGNK~DL~~~R~V--~~~ea~~--------------yAe~---------~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen  107 ASPNIVIALVGNKADLLERREV--EFEEAQA--------------YAES---------QGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             CCCCeEEEEecchhhhhhcccc--cHHHHHH--------------HHHh---------cCCEEEEEecccccCHHHHHHH
Confidence            4456667779999999874322  1111111              1111         3578999999999999999999


Q ss_pred             HHHHHHHH
Q 020549          308 VEESAQEF  315 (324)
Q Consensus       308 i~~~~~~~  315 (324)
                      |.+.++..
T Consensus       162 Ia~~lp~~  169 (200)
T KOG0092|consen  162 IAEKLPCS  169 (200)
T ss_pred             HHHhccCc
Confidence            99998753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.86  E-value=4.4e-21  Score=162.45  Aligned_cols=117  Identities=20%  Similarity=0.321  Sum_probs=79.7

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ....+.|+||||+.+|..      .+...  ...+|++++|||+.++...+.     ...+..+...++|+|+|+||+|+
T Consensus        68 ~~~~i~~iDtPG~~~f~~------~~~~~--~~~~D~ailvVda~~g~~~~~-----~~~l~~~~~~~~p~ivvlNK~D~  134 (188)
T PF00009_consen   68 NNRKITLIDTPGHEDFIK------EMIRG--LRQADIAILVVDANDGIQPQT-----EEHLKILRELGIPIIVVLNKMDL  134 (188)
T ss_dssp             SSEEEEEEEESSSHHHHH------HHHHH--HTTSSEEEEEEETTTBSTHHH-----HHHHHHHHHTT-SEEEEEETCTS
T ss_pred             cccceeecccccccceee------cccce--ecccccceeeeeccccccccc-----ccccccccccccceEEeeeeccc
Confidence            367889999999876522      12222  245799999999999877665     22335667789999999999999


Q ss_pred             CChHhHHHHHHhHH-HHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFE-VFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      . .....+..+++. .+.+..                   .+.  ...+++++||++|.|+++|++.|.+++|
T Consensus       135 ~-~~~~~~~~~~~~~~l~~~~-------------------~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  135 I-EKELEEIIEEIKEKLLKEY-------------------GENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHT-------------------TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             h-hhhHHHHHHHHHHHhcccc-------------------ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            9 333333333333 111110                   111  1468999999999999999999999877

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=3.2e-20  Score=169.67  Aligned_cols=168  Identities=21%  Similarity=0.270  Sum_probs=105.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..|+|+|.||||||||+|+|++....             +..+|++|.                  .++-|.+..     
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~-------------va~ypfTT~------------------~p~~G~v~~-----  202 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPK-------------IADYPFTTL------------------HPNLGVVRV-----  202 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCc-------------cCCCCCcee------------------CceEEEEEe-----
Confidence            45999999999999999999986432             455666651                  112222210     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                   .....+.||||||+.+.... ..++..+.+.+  ..++++++|+|++...  +....|...+   ..
T Consensus       203 -------------~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~a~vlI~ViD~s~~~s~e~~~~~~~EL---~~  264 (335)
T PRK12299        203 -------------DDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRLLLHLVDIEAVDPVEDYKTIRNEL---EK  264 (335)
T ss_pred             -------------CCCcEEEEEeCCCccCCCCccccHHHHHHHHh--hhcCEEEEEEcCCCCCCHHHHHHHHHHH---HH
Confidence                         12457999999998763211 12333333333  2468999999987532  2223343333   22


Q ss_pred             Hhh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ...  .++|+++|+||+|+.........  ......                      . ....+++++||++++|+++|
T Consensus       265 ~~~~L~~kp~IIV~NKiDL~~~~~~~~~--~~~~~~----------------------~-~~~~~i~~iSAktg~GI~eL  319 (335)
T PRK12299        265 YSPELADKPRILVLNKIDLLDEEEEREK--RAALEL----------------------A-ALGGPVFLISAVTGEGLDEL  319 (335)
T ss_pred             hhhhcccCCeEEEEECcccCCchhHHHH--HHHHHH----------------------H-hcCCCEEEEEcCCCCCHHHH
Confidence            222  46899999999999765422110  111000                      0 01368999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFM  316 (324)
Q Consensus       305 ~~~i~~~~~~~~  316 (324)
                      ++.|.+.+.+.+
T Consensus       320 ~~~L~~~l~~~~  331 (335)
T PRK12299        320 LRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHhhh
Confidence            999999887643

>cd04171 SelB SelB subfamily

Probab=99.85  E-value=2.7e-20  Score=153.32  Aligned_cols=113  Identities=20%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl  243 (324)
                      +..+.||||||+.++.      ..+...+  ..+|++++|+|+.+++......  .+   ..+...+. |+++|+||+|+
T Consensus        50 ~~~~~~~DtpG~~~~~------~~~~~~~--~~ad~ii~V~d~~~~~~~~~~~--~~---~~~~~~~~~~~ilv~NK~Dl  116 (164)
T cd04171          50 GKRLGFIDVPGHEKFI------KNMLAGA--GGIDLVLLVVAADEGIMPQTRE--HL---EILELLGIKRGLVVLTKADL  116 (164)
T ss_pred             CcEEEEEECCChHHHH------HHHHhhh--hcCCEEEEEEECCCCccHhHHH--HH---HHHHHhCCCcEEEEEECccc
Confidence            4578999999987652      1111111  3479999999998755443311  11   12222344 99999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      ...........++....+.                    ......+++++||++|+|+++++..|.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         117 VDEDWLELVEEEIRELLAG--------------------TFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHHHHHHHHHh--------------------cCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            8754222222222211100                    0013478999999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.85  E-value=4.8e-21  Score=157.36  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=91.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+...+.+++       .. .+...+.                       ..     
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~-------~~-~~~~~~~-----------------------~~-----   45 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-------ED-SYRKQVV-----------------------ID-----   45 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc-------hh-eEEEEEE-----------------------EC-----
Confidence            579999999999999999999876643322111       00 0000000                       00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+.++..      ....+++.  ++.+++|+|...  ++.....|...+.  ...
T Consensus        46 -------------~~~~~~~i~Dt~G~~~~~~------l~~~~~~~--~~~~i~v~~~~~~~s~~~~~~~~~~i~--~~~  102 (162)
T cd04138          46 -------------GETCLLDILDTAGQEEYSA------MRDQYMRT--GEGFLCVFAINSRKSFEDIHTYREQIK--RVK  102 (162)
T ss_pred             -------------CEEEEEEEEECCCCcchHH------HHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence                         1134577999999877521      12223333  456666666543  3333333322221  112


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......   .....+.+                     .  ...+++++||++|.|++++|+.
T Consensus       103 ~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~  156 (162)
T cd04138         103 DSDDVPMVLVGNKCDLAARTVSS---RQGQDLAK---------------------S--YGIPYIETSAKTRQGVEEAFYT  156 (162)
T ss_pred             CCCCCCEEEEEECcccccceecH---HHHHHHHH---------------------H--hCCeEEEecCCCCCCHHHHHHH
Confidence            23578999999999997632111   11111111                     1  1468999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       157 l~~~~  161 (162)
T cd04138         157 LVREI  161 (162)
T ss_pred             HHHHh
Confidence            98653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.85  E-value=2.9e-20  Score=154.08  Aligned_cols=163  Identities=17%  Similarity=0.277  Sum_probs=95.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc-ccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ++|+++|++|||||||+++|++..+..             ...++++ .+..                   +...     
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~-------------~~~~~~t~~~~~-------------------~~~~-----   43 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-------------APYPFTTKSLFV-------------------GHFD-----   43 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCcc-------------CCCCCcccceeE-------------------EEEc-----
Confidence            368999999999999999999875432             1112211 0000                   0000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh--hHHHHHHHHhccCCcEEEEEEcCCCCCC-chhHHHhHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSAN-PMTFMSNMLYACS  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~~~~d~iv~vvD~~~~~~-~~~~~~~~~~~~~  225 (324)
                                    ..+.++.||||||+.+...+..  ......... ...+|++++|+|+..... ....+..++..+.
T Consensus        44 --------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~  108 (168)
T cd01897          44 --------------YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIK  108 (168)
T ss_pred             --------------cCceEEEEEECCCcCCccccCCchHHHHHHHHH-HhccCcEEEEEeCCcccccchHHHHHHHHHHH
Confidence                          1246899999999854211111  001111111 123588999999876432 1122222222221


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .. ..+.|+|+|+||+|+........    ...+.                      . ....+++++||++|.|+++++
T Consensus       109 ~~-~~~~pvilv~NK~Dl~~~~~~~~----~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~  160 (168)
T cd01897         109 PL-FKNKPVIVVLNKIDLLTFEDLSE----IEEEE----------------------E-LEGEEVLKISTLTEEGVDEVK  160 (168)
T ss_pred             hh-cCcCCeEEEEEccccCchhhHHH----HHHhh----------------------h-hccCceEEEEecccCCHHHHH
Confidence            11 13799999999999986543322    11100                      1 135689999999999999999


Q ss_pred             HHHHHHH
Q 020549          306 KAVEESA  312 (324)
Q Consensus       306 ~~i~~~~  312 (324)
                      +.|.+.+
T Consensus       161 ~~l~~~~  167 (168)
T cd01897         161 NKACELL  167 (168)
T ss_pred             HHHHHHh
Confidence            9998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.85  E-value=5.8e-21  Score=158.11  Aligned_cols=160  Identities=14%  Similarity=0.142  Sum_probs=92.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||++++++..+...+.+++.        ..+..                       -+.+.     
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--------~~~~~-----------------------~~~~~-----   45 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE--------DTYRQ-----------------------VISCS-----   45 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch--------heEEE-----------------------EEEEC-----
Confidence            5799999999999999999998876543222110        00000                       00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||++++..      .....+  ..++.+++|+|...  ++.....|...+......
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  104 (165)
T cd04140          46 -------------KNICTLQITDTTGSHQFPA------MQRLSI--SKGHAFILVYSVTSKQSLEELKPIYELICEIKGN  104 (165)
T ss_pred             -------------CEEEEEEEEECCCCCcchH------HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence                         1245788999999987621      111112  23466666666544  333333343322211111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+........  .....+.                      . ....+++++||++|.|++++|+.
T Consensus       105 ~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~----------------------~-~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140         105 NIEKIPIMLVGNKCDESHKREVSS--NEGAACA----------------------T-EWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             CCCCCCEEEEEECccccccCeecH--HHHHHHH----------------------H-HhCCcEEEeecCCCCCHHHHHHH
Confidence            125789999999999975322100  0001000                      0 11367899999999999999999


Q ss_pred             HHHH
Q 020549          308 VEES  311 (324)
Q Consensus       308 i~~~  311 (324)
                      |.+.
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04112 Rab26 Rab26 subfamily

Probab=99.85  E-value=1.5e-20  Score=159.48  Aligned_cols=169  Identities=17%  Similarity=0.173  Sum_probs=101.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|++|||||||+++|.+..+..+..             +.+...+..                  .....   +.
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-------------~~t~~~~~~------------------~~~~~---~~   46 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-------------IATVGIDFR------------------NKVVT---VD   46 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCc-------------CCcccceeE------------------EEEEE---EC
Confidence            379999999999999999999876643210             000000000                  00000   00


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+  ..+|++++|+|......  ....|   +..+...
T Consensus        47 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~ad~~i~v~D~~~~~s~~~~~~~---~~~i~~~  102 (191)
T cd04112          47 -------------GVKVKLQIWDTAGQERFRS------VTHAYY--RDAHALLLLYDITNKASFDNIRAW---LTEIKEY  102 (191)
T ss_pred             -------------CEEEEEEEEeCCCcHHHHH------hhHHHc--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence                         1235788999999866521      111112  23689999999865321  12223   2222333


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......  ..+...+..                     .  ...+++++||++|.|++++|..
T Consensus       103 ~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~l~~---------------------~--~~~~~~e~Sa~~~~~v~~l~~~  157 (191)
T cd04112         103 AQEDVVIMLLGNKADMSGERVVK--REDGERLAK---------------------E--YGVPFMETSAKTGLNVELAFTA  157 (191)
T ss_pred             CCCCCcEEEEEEcccchhccccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHH
Confidence            34578999999999997432110  011111111                     1  1368999999999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 020549          308 VEESAQEFMETYKY  321 (324)
Q Consensus       308 i~~~~~~~~~~~~~  321 (324)
                      |.+.+......+++
T Consensus       158 l~~~~~~~~~~~~~  171 (191)
T cd04112         158 VAKELKHRKYEQPD  171 (191)
T ss_pred             HHHHHHHhccccCC
Confidence            99999877655543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=2.5e-20  Score=178.98  Aligned_cols=171  Identities=19%  Similarity=0.269  Sum_probs=105.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|++|||||||+|+|++..+..            ++..++++    ++.+.              ..+.    
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------~s~~~gtT----~d~~~--------------~~~~----  255 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------VDDVAGTT----VDPVD--------------SLIE----  255 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc----CCcce--------------EEEE----
Confidence            45899999999999999999999875432            23333333    11100              0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH----hccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF----ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~----~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                     ..+..+.||||||+.+.... ..+......+    .-..+|++++|+|+.++...++.     ..
T Consensus       256 ---------------~~~~~~~l~DTaG~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~-----~~  314 (472)
T PRK03003        256 ---------------LGGKTWRFVDTAGLRRRVKQ-ASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ-----RV  314 (472)
T ss_pred             ---------------ECCEEEEEEECCCccccccc-cchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH-----HH
Confidence                           12456789999998543111 1111111111    11357999999999887655442     12


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +..+...++|+|+|+||+|+............+.   ..+                   ....+.+++++||++|.||++
T Consensus       315 ~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~---~~l-------------------~~~~~~~~~~~SAk~g~gv~~  372 (472)
T PRK03003        315 LSMVIEAGRALVLAFNKWDLVDEDRRYYLEREID---REL-------------------AQVPWAPRVNISAKTGRAVDK  372 (472)
T ss_pred             HHHHHHcCCCEEEEEECcccCChhHHHHHHHHHH---Hhc-------------------ccCCCCCEEEEECCCCCCHHH
Confidence            2444557899999999999986432211111111   000                   112357899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      +|..|.+.+...
T Consensus       373 lf~~i~~~~~~~  384 (472)
T PRK03003        373 LVPALETALESW  384 (472)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.84  E-value=1e-20  Score=156.24  Aligned_cols=160  Identities=13%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+...+.+++       .. .+..                       .....     
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~-------~~-~~~~-----------------------~~~~~-----   44 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI-------ED-SYRK-----------------------QIEID-----   44 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCch-------hh-hEEE-----------------------EEEEC-----
Confidence            379999999999999999999877654322111       00 0000                       00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||++++..      .....++  .+|.+++++|....  +.....|...+  ....
T Consensus        45 -------------~~~~~l~i~Dt~g~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--~~~~  101 (164)
T smart00173       45 -------------GEVCLLDILDTAGQEEFSA------MRDQYMR--TGEGFLLVYSITDRQSFEEIKKFREQI--LRVK  101 (164)
T ss_pred             -------------CEEEEEEEEECCCcccchH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHH--HHhc
Confidence                         1235778999999887621      1112222  24677777776542  22223332222  1222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      .. ...+++++||++|.|++++|+.
T Consensus       102 ~~~~~pii~v~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~i~~l~~~  156 (164)
T smart00173      102 DRDDVPIVLVGNKCDLESERVVS--TEEGKELA----------------------RQ-WGCPFLETSAKERVNVDEAFYD  156 (164)
T ss_pred             CCCCCCEEEEEECccccccceEc--HHHHHHHH----------------------HH-cCCEEEEeecCCCCCHHHHHHH
Confidence            33478999999999997532110  00111111                      11 1378999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |.+.+.
T Consensus       157 l~~~~~  162 (164)
T smart00173      157 LVREIR  162 (164)
T ss_pred             HHHHHh
Confidence            998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04136 Rap_like Rap-like subfamily

Probab=99.84  E-value=5.9e-21  Score=157.28  Aligned_cols=159  Identities=14%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||++++++..+...+.+++       .. .+...                       +...     
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-------~~-~~~~~-----------------------~~~~-----   45 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------ED-SYRKQ-----------------------IEVD-----   45 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch-------hh-hEEEE-----------------------EEEC-----
Confidence            579999999999999999999876653222111       00 00000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||++++..      ....+++  .+|++++|+|...  ++.....|...+.  ...
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~--~~~  102 (163)
T cd04136          46 -------------GQQCMLEILDTAGTEQFTA------MRDLYIK--NGQGFVLVYSITSQSSFNDLQDLREQIL--RVK  102 (163)
T ss_pred             -------------CEEEEEEEEECCCccccch------HHHHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence                         1235678999999987621      1111222  3467777777643  2332333322221  111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......  .+....+.+                     .+  ..+++++||++|.|++++|..
T Consensus       103 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~~--~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04136         103 DTENVPMVLVGNKCDLEDERVVS--REEGQALAR---------------------QW--GCPFYETSAKSKINVDEVFAD  157 (163)
T ss_pred             CCCCCCEEEEEECccccccceec--HHHHHHHHH---------------------Hc--CCeEEEecCCCCCCHHHHHHH
Confidence            23478999999999987532210  011111110                     11  278999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       158 l~~~~  162 (163)
T cd04136         158 LVRQI  162 (163)
T ss_pred             HHHhc
Confidence            98753

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.84  E-value=1.3e-20  Score=157.28  Aligned_cols=161  Identities=15%  Similarity=0.162  Sum_probs=96.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||++++.+..+...+.+++.      ..+  ...+                       ...     
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~------~~~--~~~~-----------------------~~~-----   46 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE------DAY--KQQA-----------------------RID-----   46 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc------ceE--EEEE-----------------------EEC-----
Confidence            6899999999999999999998877643322210      000  0000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+..  +|++++|+|.  ..++.....|...+.  ...
T Consensus        47 -------------~~~~~l~i~Dt~G~~~~~~------l~~~~~~~--~d~~ilv~d~~~~~Sf~~~~~~~~~i~--~~~  103 (172)
T cd04141          47 -------------NEPALLDILDTAGQAEFTA------MRDQYMRC--GEGFIICYSVTDRHSFQEASEFKKLIT--RVR  103 (172)
T ss_pred             -------------CEEEEEEEEeCCCchhhHH------HhHHHhhc--CCEEEEEEECCchhHHHHHHHHHHHHH--Hhc
Confidence                         1235688999999877521      11222333  4555666554  444444444433332  111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.....+.  .++...+.+                     .  .+.++++|||++|.||+++|+.
T Consensus       104 ~~~~~piilvgNK~Dl~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~Sa~~~~~v~~~f~~  158 (172)
T cd04141         104 LTEDIPLVLVGNKVDLESQRQVT--TEEGRNLAR---------------------E--FNCPFFETSAALRHYIDDAFHG  158 (172)
T ss_pred             CCCCCCEEEEEEChhhhhcCccC--HHHHHHHHH---------------------H--hCCEEEEEecCCCCCHHHHHHH
Confidence            23579999999999986542110  001111111                     1  1468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+..
T Consensus       159 l~~~~~~  165 (172)
T cd04141         159 LVREIRR  165 (172)
T ss_pred             HHHHHHH
Confidence            9987654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04120 Rab12 Rab12 subfamily

Probab=99.84  E-value=1.1e-20  Score=161.43  Aligned_cols=161  Identities=19%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+++|..|||||||+++|....|...+.+++.     .. +. ...+.                       .       
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~-----~~-~~-~~~i~-----------------------~-------   44 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVG-----VD-FK-IKTVE-----------------------L-------   44 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcce-----eE-EE-EEEEE-----------------------E-------
Confidence            489999999999999999998877654332210     00 00 00000                       0       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~  228 (324)
                                 ......+.||||+|++++..      ....+++  .+|++++|+|..+  ++.....|...+   ....
T Consensus        45 -----------~~~~v~l~iwDtaGqe~~~~------l~~~y~~--~ad~iIlVfDvtd~~Sf~~l~~w~~~i---~~~~  102 (202)
T cd04120          45 -----------RGKKIRLQIWDTAGQERFNS------ITSAYYR--SAKGIILVYDITKKETFDDLPKWMKMI---DKYA  102 (202)
T ss_pred             -----------CCEEEEEEEEeCCCchhhHH------HHHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHH---HHhC
Confidence                       01246789999999987621      1122233  3577777777654  344444554333   3333


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+.....+..  .....+.                      .......++++||++|.||+++|..|
T Consensus       103 ~~~~piilVgNK~DL~~~~~v~~--~~~~~~a----------------------~~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120         103 SEDAELLLVGNKLDCETDREISR--QQGEKFA----------------------QQITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             CCCCcEEEEEECcccccccccCH--HHHHHHH----------------------HhcCCCEEEEecCCCCCCHHHHHHHH
Confidence            45799999999999975332110  0111111                      11123679999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      ++.+..
T Consensus       159 ~~~~~~  164 (202)
T cd04120         159 VDDILK  164 (202)
T ss_pred             HHHHHH
Confidence            987753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01898 Obg Obg subfamily

Probab=99.84  E-value=3.6e-20  Score=153.73  Aligned_cols=119  Identities=17%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             CCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh--hcCCCeEEEeeccc
Q 020549          166 LDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD  242 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D  242 (324)
                      ..+.||||||+.+..... .......+.+  ..+|++++|+|+.......+....+...+....  ..++|+++|+||+|
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D  125 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID  125 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence            388999999986432111 1111122222  246899999999765212222222222222221  13689999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      +.+......+.....                         ......+++++||++|.|++++++.|.+.
T Consensus       126 l~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         126 LLDEEELFELLKELL-------------------------KELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             cCCchhhHHHHHHHH-------------------------hhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            987654322222111                         00124679999999999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.2e-20  Score=150.69  Aligned_cols=165  Identities=14%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++++++|..|||||+|+.+++...|...+..++ +.+.+...+.    +                             
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti-Gvefg~r~~~----i-----------------------------   50 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI-GVEFGARMVT----I-----------------------------   50 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCcccccccee-eeeeceeEEE----E-----------------------------
Confidence            45789999999999999999999998876443222 1111111000    0                             


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                    ....++++||||+||+.|+.      ....+.+.+...++||.|+.++++...+.|...+   +..
T Consensus        51 --------------d~k~IKlqiwDtaGqe~frs------v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~---rq~  107 (216)
T KOG0098|consen   51 --------------DGKQIKLQIWDTAGQESFRS------VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDA---RQH  107 (216)
T ss_pred             --------------cCceEEEEEEecCCcHHHHH------HHHHHhccCcceEEEEEccchhhHHHHHHHHHHH---HHh
Confidence                          03467899999999988732      4444555566679999999999999998885544   445


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+..++|++||+||.....+..                +.+..++++.         +..+.++||++++||++.|..
T Consensus       108 ~~~NmvImLiGNKsDL~~rR~Vs~----------------EEGeaFA~eh---------gLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen  108 SNENMVIMLIGNKSDLEARREVSK----------------EEGEAFAREH---------GLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             cCCCcEEEEEcchhhhhccccccH----------------HHHHHHHHHc---------CceeehhhhhhhhhHHHHHHH
Confidence            567888999999999987653210                0123333333         345668999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      +...+..
T Consensus       163 ta~~Iy~  169 (216)
T KOG0098|consen  163 TAKEIYR  169 (216)
T ss_pred             HHHHHHH
Confidence            8877653

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.84  E-value=1.5e-20  Score=162.91  Aligned_cols=200  Identities=20%  Similarity=0.234  Sum_probs=122.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+...|++||.||||||||.|.+++.....            ++....||    |.++              .|++++ 
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~------------vS~K~~TT----r~~i--------------lgi~ts-  117 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA------------VSRKVHTT----RHRI--------------LGIITS-  117 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCcccc------------ccccccce----eeee--------------eEEEec-
Confidence            4567889999999999999999999987663            55555565    2221              366664 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh--hhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchh-HHHhH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMT-FMSNM  220 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~-~~~~~  220 (324)
                                        ...+++|+||||......  ++...-.+.+....  ..+|+++.|+|+...-.... .....
T Consensus       118 ------------------~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~  179 (379)
T KOG1423|consen  118 ------------------GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHM  179 (379)
T ss_pred             ------------------CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHH
Confidence                              478999999999876521  11111112222222  35799999999985222211 11111


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHh--------HHHHhccCcee
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLA--------LDEFYKNLKSV  291 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~iv  291 (324)
                      +   .  .-..+|-|+|+||+|........ +....+..  ..+.   ....++.++....        ...|..+-++|
T Consensus       180 l---~--~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~--g~l~---~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF  249 (379)
T KOG1423|consen  180 L---E--EYSKIPSILVMNKIDKLKQKRLLLNLKDLLTN--GELA---KLKLEVQEKFTDVPSDEKWRTICGWSHFERVF  249 (379)
T ss_pred             H---H--HHhcCCceeeccchhcchhhhHHhhhHHhccc--cccc---hhhhhHHHHhccCCcccccccccCcccceeEE
Confidence            1   1  12468999999999998765431 11111100  0000   0000000000000        00133345799


Q ss_pred             eeccccCCChHHHHHHHHHHHHHHHHhhhccCC
Q 020549          292 GVSSVSGAGIEAYFKAVEESAQEFMETYKYCLP  324 (324)
Q Consensus       292 ~vSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~~  324 (324)
                      ++||++|+||++|.++|...++.++|+|+..++
T Consensus       250 ~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~  282 (379)
T KOG1423|consen  250 MVSALYGEGIKDLKQYLMSQAPPGPWKYPADIV  282 (379)
T ss_pred             EEecccccCHHHHHHHHHhcCCCCCCCCCcccc
Confidence            999999999999999999999999999987653

>cd01865 Rab3 Rab3 subfamily

Probab=99.84  E-value=3.5e-20  Score=153.41  Aligned_cols=163  Identities=13%  Similarity=0.168  Sum_probs=96.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+...+.+++.     . .+...+                        +...     
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----~-~~~~~~------------------------~~~~-----   46 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG-----I-DFKVKT------------------------VFRN-----   46 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee-----e-EEEEEE------------------------EEEC-----
Confidence            5799999999999999999998876543322110     0 000000                        0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   .....+.||||||+.++..      .....+  ..+|++++|+|..+.. .......++..+.....
T Consensus        47 -------------~~~~~~~l~Dt~g~~~~~~------~~~~~~--~~~~~~l~v~d~~~~~-s~~~~~~~~~~i~~~~~  104 (165)
T cd01865          47 -------------DKRVKLQIWDTAGQERYRT------ITTAYY--RGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSW  104 (165)
T ss_pred             -------------CEEEEEEEEECCChHHHHH------HHHHHc--cCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhCC
Confidence                         1235788999999876521      111111  3468888999875431 11112222222233333


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...|+++|+||+|+.......  .+....+.                      +. .+.+++++||++|.|++++|+.+.
T Consensus       105 ~~~piivv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865         105 DNAQVILVGNKCDMEDERVVS--SERGRQLA----------------------DQ-LGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             CCCCEEEEEECcccCcccccC--HHHHHHHH----------------------HH-cCCEEEEEECCCCCCHHHHHHHHH
Confidence            468999999999997543210  01111111                      11 135799999999999999999998


Q ss_pred             HHHHH
Q 020549          310 ESAQE  314 (324)
Q Consensus       310 ~~~~~  314 (324)
                      +.+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.84  E-value=2e-20  Score=155.78  Aligned_cols=163  Identities=20%  Similarity=0.152  Sum_probs=97.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|.+|||||||++++++..+...+.+++..      .+ ....+                       ...      
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~------~~-~~~~~-----------------------~~~------   45 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGV------DF-EMERF-----------------------EIL------   45 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee------EE-EEEEE-----------------------EEC------
Confidence            6899999999999999999998776544332210      00 00000                       000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~  228 (324)
                                  +....+.||||||++++..      .....+  ..+|++++|+|...  ++.....|...+.  ....
T Consensus        46 ------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~~--~~~~  103 (170)
T cd04108          46 ------------GVPFSLQLWDTAGQERFKC------IASTYY--RGAQAIIIVFDLTDVASLEHTRQWLEDAL--KEND  103 (170)
T ss_pred             ------------CEEEEEEEEeCCChHHHHh------hHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHH--HhcC
Confidence                        1235788999999877521      111112  34689999999865  2332333332211  1111


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ....|+++|+||+|+.+........+....+.+                     +  ...+++++||++|.|++++|..|
T Consensus       104 ~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~---------------------~--~~~~~~e~Sa~~g~~v~~lf~~l  160 (170)
T cd04108         104 PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA---------------------E--MQAEYWSVSALSGENVREFFFRV  160 (170)
T ss_pred             CCCCeEEEEEEChhcCccccccccHHHHHHHHH---------------------H--cCCeEEEEECCCCCCHHHHHHHH
Confidence            234678999999998654321100011111110                     1  13578999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (170)
T cd04108         161 AALTFE  166 (170)
T ss_pred             HHHHHH
Confidence            988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.84  E-value=1.5e-19  Score=156.69  Aligned_cols=217  Identities=13%  Similarity=0.103  Sum_probs=114.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|++++|||||+++|....+..+......+.+...++...+-+.        .-....+++...+...+.....  
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~--------~~~~~~~g~~~~~~~~~~~~~~--   70 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTS--------SVSNEILGFDSDGEVVNYPDNH--   70 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchh--------hhhhhhcccCCCCceecCCCCc--
Confidence            489999999999999999998777654433332222111111111100        0001123333322211100000  


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~  230 (324)
                      .+..-.+..  ...+..+.|+||||++++.      ..+...+....+|++++|||+..+...++     ...+..+...
T Consensus        71 ~~~~~~~~~--~~~~~~i~liDtpG~~~~~------~~~~~~~~~~~~D~~llVvda~~g~~~~d-----~~~l~~l~~~  137 (224)
T cd04165          71 LSESDIEIC--EKSSKLVTFIDLAGHERYL------KTTLFGLTGYAPDYAMLVVAANAGIIGMT-----KEHLGLALAL  137 (224)
T ss_pred             cccccceee--eeCCcEEEEEECCCcHHHH------HHHHHhhcccCCCEEEEEEECCCCCcHHH-----HHHHHHHHHc
Confidence            000000000  0235678999999986652      12222232235799999999998876654     2223455667


Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHH--hcCccchhhHHHHHHH-hHHHHhccCceeeeccccCCChHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAI--SSDHSYTSTLTNSLSL-ALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ++|+++|+||+|+.+..........+.......  .+.+.......+.+.. .-..+....|++++||.+|+|+++|+..
T Consensus       138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~  217 (224)
T cd04165         138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF  217 (224)
T ss_pred             CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence            899999999999987765544444444332210  0000000000000000 0001223469999999999999999988


Q ss_pred             HHH
Q 020549          308 VEE  310 (324)
Q Consensus       308 i~~  310 (324)
                      |..
T Consensus       218 L~~  220 (224)
T cd04165         218 LNL  220 (224)
T ss_pred             HHh
Confidence            764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04116 Rab9 Rab9 subfamily

Probab=99.84  E-value=1.2e-20  Score=156.78  Aligned_cols=163  Identities=17%  Similarity=0.254  Sum_probs=94.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|++|||||||+++|++..+...+..++     ++......                         +...   
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~~---   50 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-----GVEFLNKD-------------------------LEVD---   50 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce-----eeEEEEEE-------------------------EEEC---
Confidence            34789999999999999999999876654321111     00000000                         0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEE--EEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVT--YVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv--~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||++++..      .....++.  +|+++  |+++...++.....|...+....
T Consensus        51 ---------------~~~~~l~i~D~~G~~~~~~------~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (170)
T cd04116          51 ---------------GHFVTLQIWDTAGQERFRS------LRTPFYRG--SDCCLLTFAVDDSQSFQNLSNWKKEFIYYA  107 (170)
T ss_pred             ---------------CeEEEEEEEeCCChHHHHH------hHHHHhcC--CCEEEEEEECCCHHHHHhHHHHHHHHHHhc
Confidence                           2245788999999876521      12223333  35555  44555555555555543332111


Q ss_pred             -HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 -ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 -~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                       .....++|+++|+||+|+......   .++...+.+                     . ....+++++||++|.|+.++
T Consensus       108 ~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~---------------------~-~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116         108 DVKEPESFPFVVLGNKNDIPERQVS---TEEAQAWCR---------------------E-NGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             ccccCCCCcEEEEEECccccccccC---HHHHHHHHH---------------------H-CCCCeEEEEECCCCCCHHHH
Confidence             111246899999999998643211   111111111                     1 12357899999999999999


Q ss_pred             HHHHHHH
Q 020549          305 FKAVEES  311 (324)
Q Consensus       305 ~~~i~~~  311 (324)
                      |..+.+.
T Consensus       163 ~~~~~~~  169 (170)
T cd04116         163 FEEAVRR  169 (170)
T ss_pred             HHHHHhh
Confidence            9999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04175 Rap1 Rap1 subgroup

Probab=99.84  E-value=1.3e-20  Score=155.71  Aligned_cols=159  Identities=11%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++++...+...+.+++       .. .+...                       +...     
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~-------~~-~~~~~-----------------------~~~~-----   45 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------ED-SYRKQ-----------------------VEVD-----   45 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc-------hh-eEEEE-----------------------EEEC-----
Confidence            579999999999999999999765543221111       00 00000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....++.  +|++++|+|...  ++.....|...+  ....
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i--~~~~  102 (164)
T cd04175          46 -------------GQQCMLEILDTAGTEQFTA------MRDLYMKN--GQGFVLVYSITAQSTFNDLQDLREQI--LRVK  102 (164)
T ss_pred             -------------CEEEEEEEEECCCcccchh------HHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHH--HHhc
Confidence                         1245678999999877621      11112222  466777776543  233333332222  1222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  ......+.+                     .  ...+++++||++|.|++++|..
T Consensus       103 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~~~~~  157 (164)
T cd04175         103 DTEDVPMILVGNKCDLEDERVVG--KEQGQNLAR---------------------Q--WGCAFLETSAKAKINVNEIFYD  157 (164)
T ss_pred             CCCCCCEEEEEECCcchhccEEc--HHHHHHHHH---------------------H--hCCEEEEeeCCCCCCHHHHHHH
Confidence            33579999999999997532110  001111111                     1  1368999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       158 l~~~l  162 (164)
T cd04175         158 LVRQI  162 (164)
T ss_pred             HHHHh
Confidence            98765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=6.4e-20  Score=174.72  Aligned_cols=172  Identities=19%  Similarity=0.307  Sum_probs=106.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|.+|+|||||+|+|++.....            +...++++    ++.+.              ....   
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~------------~~~~~gtt----~~~~~--------------~~~~---  216 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI------------VSDIAGTT----RDSID--------------IPFE---  216 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeee------------cCCCCCce----ECcEe--------------EEEE---
Confidence            356789999999999999999999864321            22233332    11000              0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hH-HHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SG-AIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~-~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                      ..+..+.||||||+.++..... .. ....+.... ..+|++++|+|+.++...++.     ..
T Consensus       217 ----------------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-----~~  275 (429)
T TIGR03594       217 ----------------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-----RI  275 (429)
T ss_pred             ----------------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-----HH
Confidence                            1245789999999876421110 11 111111211 347999999999988765542     22


Q ss_pred             HHHHhhcCCCeEEEeeccccC-ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          224 CSILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      +..+...++|+|+|+||+|++ +.....+....+.   ..+                   .+..+.+++++||++|.|++
T Consensus       276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---~~~-------------------~~~~~~~vi~~SA~~g~~v~  333 (429)
T TIGR03594       276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR---RKL-------------------PFLDFAPIVFISALTGQGVD  333 (429)
T ss_pred             HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH---Hhc-------------------ccCCCCceEEEeCCCCCCHH
Confidence            244455689999999999998 3332222222221   100                   22345899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQE  314 (324)
Q Consensus       303 ~l~~~i~~~~~~  314 (324)
                      ++|+.|.+....
T Consensus       334 ~l~~~i~~~~~~  345 (429)
T TIGR03594       334 KLLDAIDEVYEN  345 (429)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.83  E-value=1.1e-19  Score=165.85  Aligned_cols=166  Identities=19%  Similarity=0.307  Sum_probs=101.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..|+|+|.||||||||+++|++....             +.++|++|.                  .++.|.+.-     
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~-------------va~y~fTT~------------------~p~ig~v~~-----  201 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK-------------IADYPFTTL------------------VPNLGVVRV-----  201 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc-------------ccCCCCCcc------------------CCEEEEEEe-----
Confidence            46999999999999999999886432             445555541                  111222210     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                   ....++.||||||+.+.... ..++..+.+.+  ..++++++|+|+....  .+...+..+...+..
T Consensus       202 -------------~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~  266 (329)
T TIGR02729       202 -------------DDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKK  266 (329)
T ss_pred             -------------CCceEEEEEeCCCcccCCcccccHHHHHHHHH--HhhCEEEEEEcCccccccCHHHHHHHHHHHHHH
Confidence                         11367899999998764211 12333333333  2368999999987531  222222222222222


Q ss_pred             Hh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      +.  ..++|+++|+||+|+.......++.+.+.                         +.. ..+++++||++++|+++|
T Consensus       267 ~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~-------------------------~~~-~~~vi~iSAktg~GI~eL  320 (329)
T TIGR02729       267 YSPELAEKPRIVVLNKIDLLDEEELAELLKELK-------------------------KAL-GKPVFPISALTGEGLDEL  320 (329)
T ss_pred             hhhhhccCCEEEEEeCccCCChHHHHHHHHHHH-------------------------HHc-CCcEEEEEccCCcCHHHH
Confidence            22  24789999999999987643322222111                         111 357999999999999999


Q ss_pred             HHHHHHHH
Q 020549          305 FKAVEESA  312 (324)
Q Consensus       305 ~~~i~~~~  312 (324)
                      +..|.+.+
T Consensus       321 ~~~I~~~l  328 (329)
T TIGR02729       321 LYALAELL  328 (329)
T ss_pred             HHHHHHHh
Confidence            99998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.83  E-value=2.3e-20  Score=153.85  Aligned_cols=159  Identities=12%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|+|||||++++++..+.....+++       ... +...+                      ...      
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-------~~~-~~~~~----------------------~~~------   46 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-------EDS-YTKQC----------------------EID------   46 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc-------cce-EEEEE----------------------EEC------
Confidence            689999999999999999999876543221111       000 00000                      000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+.++..      .....+.  .+|.+++|+|..+..  .....|...+  ....
T Consensus        47 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~--~~~~  103 (164)
T cd04145          47 -------------GQWAILDILDTAGQEEFSA------MREQYMR--TGEGFLLVFSVTDRGSFEEVDKFHTQI--LRVK  103 (164)
T ss_pred             -------------CEEEEEEEEECCCCcchhH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHH--HHHh
Confidence                         1235688999999877621      1222232  357888888876532  2222232211  1112


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      .. ...+++++||++|.|++++|+.
T Consensus       104 ~~~~~piiiv~NK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~i~~l~~~  158 (164)
T cd04145         104 DRDEFPMILVGNKADLEHQRKVS--REEGQELA----------------------RK-LKIPYIETSAKDRLNVDKAFHD  158 (164)
T ss_pred             CCCCCCEEEEeeCccccccceec--HHHHHHHH----------------------HH-cCCcEEEeeCCCCCCHHHHHHH
Confidence            23578999999999997543110  01111111                      11 1368999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       159 l~~~~  163 (164)
T cd04145         159 LVRVI  163 (164)
T ss_pred             HHHhh
Confidence            98764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.83  E-value=2.9e-20  Score=159.11  Aligned_cols=168  Identities=18%  Similarity=0.152  Sum_probs=98.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.+++. .+...      ..+.+.                            
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~-~d~~~------~~v~~~----------------------------   45 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIG-VDFAL------KVIEWD----------------------------   45 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-EEEEE------EEEEEC----------------------------
Confidence            4799999999999999999998876543332220 00000      000000                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHH-HH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC-SI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~-~~  226 (324)
                      .            .....+.||||||++++..      ....++  ..++++++|+|....  +.....|...+... ..
T Consensus        46 ~------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~  105 (201)
T cd04107          46 P------------NTVVRLQLWDIAGQERFGG------MTRVYY--RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL  105 (201)
T ss_pred             C------------CCEEEEEEEECCCchhhhh------hHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence            0            1245788999999876511      111122  345888888887542  33333443333211 11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+|+|+||+|+......  ..++...+.                      ......+++++||++|.||+++|+
T Consensus       106 ~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sak~~~~v~e~f~  161 (201)
T cd04107         106 PNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFC----------------------KENGFIGWFETSAKEGINIEEAMR  161 (201)
T ss_pred             cCCCCCcEEEEEECCCccccccc--CHHHHHHHH----------------------HHcCCceEEEEeCCCCCCHHHHHH
Confidence            11357899999999999742211  011111111                      111235799999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          307 AVEESAQEFM  316 (324)
Q Consensus       307 ~i~~~~~~~~  316 (324)
                      .|.+.+....
T Consensus       162 ~l~~~l~~~~  171 (201)
T cd04107         162 FLVKNILAND  171 (201)
T ss_pred             HHHHHHHHhc
Confidence            9999876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=1.3e-19  Score=171.74  Aligned_cols=170  Identities=23%  Similarity=0.298  Sum_probs=104.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ...|+|+|.||||||||+|+|++....             +.++|++|                  +.++.|.+.     
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpk-------------IadypfTT------------------l~P~lGvv~-----  202 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPK-------------IADYPFTT------------------LVPNLGVVQ-----  202 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCcc-------------ccccCccc------------------ccceEEEEE-----
Confidence            356999999999999999999986432             45566665                  112223222     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCC---Cc---hhHHHhHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA---NP---MTFMSNML  221 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~---~~---~~~~~~~~  221 (324)
                                    ..+..+.||||||+.+..... .++..+.+.+  ..+|++|+|||++...   .+   ...+...+
T Consensus       203 --------------~~~~~f~laDtPGliegas~g~gLg~~fLrhi--eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL  266 (500)
T PRK12296        203 --------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ERCAVLVHVVDCATLEPGRDPLSDIDALEAEL  266 (500)
T ss_pred             --------------ECCeEEEEEECCCCccccchhhHHHHHHHHHH--HhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence                          124679999999986532111 1222222322  3479999999987421   12   22232222


Q ss_pred             HHHHH-H-------hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeee
Q 020549          222 YACSI-L-------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGV  293 (324)
Q Consensus       222 ~~~~~-~-------~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~v  293 (324)
                      ..... +       ...++|+|+|+||+|+.......+..   ...                 +    ..  ...+++++
T Consensus       267 ~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l---~~~-----------------l----~~--~g~~Vf~I  320 (500)
T PRK12296        267 AAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFV---RPE-----------------L----EA--RGWPVFEV  320 (500)
T ss_pred             HHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHH---HHH-----------------H----HH--cCCeEEEE
Confidence            21110 0       12468999999999997544322111   100                 0    01  14689999


Q ss_pred             ccccCCChHHHHHHHHHHHHHHH
Q 020549          294 SSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       294 SA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                      ||++++|+++|+..|.+.+....
T Consensus       321 SA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        321 SAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999887644

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.83  E-value=5.7e-20  Score=153.83  Aligned_cols=169  Identities=15%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++|.+..+...+.+++..      .+  ...+                       ...     
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~------~~--~~~~-----------------------~~~-----   45 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD------NY--AVTV-----------------------MIG-----   45 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee------ee--EEEE-----------------------EEC-----
Confidence            57999999999999999999988775444333210      00  0000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~~~~  226 (324)
                                   .....+.||||||++++..       +.... -..+|++++|+|..+.  +.... .|...+   ..
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~~~-~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i---~~  101 (175)
T cd01874          46 -------------GEPYTLGLFDTAGQEDYDR-------LRPLS-YPQTDVFLVCFSVVSPSSFENVKEKWVPEI---TH  101 (175)
T ss_pred             -------------CEEEEEEEEECCCccchhh-------hhhhh-cccCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence                         1235788999999987621       11111 1235788888877543  33332 343322   22


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      . ..+.|+|+|+||+|+.......+.....        .    ......+.+..+........++++||++|.|++++|+
T Consensus       102 ~-~~~~piilvgnK~Dl~~~~~~~~~l~~~--------~----~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~  168 (175)
T cd01874         102 H-CPKTPFLLVGTQIDLRDDPSTIEKLAKN--------K----QKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFD  168 (175)
T ss_pred             h-CCCCCEEEEEECHhhhhChhhHHHhhhc--------c----CCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHH
Confidence            1 2468999999999986543221111000        0    0000111111111112336899999999999999999


Q ss_pred             HHHHH
Q 020549          307 AVEES  311 (324)
Q Consensus       307 ~i~~~  311 (324)
                      .++++
T Consensus       169 ~~~~~  173 (175)
T cd01874         169 EAILA  173 (175)
T ss_pred             HHHHH
Confidence            99875

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.83  E-value=7.5e-20  Score=151.74  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=97.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|.+..+...+.+++     +.   ++..    +                  .+...    
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~-----~~---~~~~----~------------------~~~~~----   48 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI-----GI---DFKI----R------------------TIELD----   48 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc-----cc---eEEE----E------------------EEEEC----
Confidence            4789999999999999999999887654332211     00   0000    0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    .....+.||||||+.++..      .....+  ..+|++++++|..+... ......++..+....
T Consensus        49 --------------~~~~~l~l~D~~g~~~~~~------~~~~~~--~~ad~~i~v~d~~~~~s-~~~~~~~~~~i~~~~  105 (167)
T cd01867          49 --------------GKKIKLQIWDTAGQERFRT------ITTAYY--RGAMGIILVYDITDEKS-FENIRNWMRNIEEHA  105 (167)
T ss_pred             --------------CEEEEEEEEeCCchHHHHH------HHHHHh--CCCCEEEEEEECcCHHH-HHhHHHHHHHHHHhC
Confidence                          1235788999999876521      111122  34689999998754321 111112222222333


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+.+....  ..+....+..                     .  ...+++++||++|.|++++|..|
T Consensus       106 ~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867         106 SEDVERMLVGNKCDMEEKRVV--SKEEGEALAD---------------------E--YGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             CCCCcEEEEEECcccccccCC--CHHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHHH
Confidence            457899999999999854221  1111111111                     1  13579999999999999999999


Q ss_pred             HHHHH
Q 020549          309 EESAQ  313 (324)
Q Consensus       309 ~~~~~  313 (324)
                      .+.+.
T Consensus       161 ~~~~~  165 (167)
T cd01867         161 AKDIK  165 (167)
T ss_pred             HHHHH
Confidence            98763

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.83  E-value=9e-20  Score=167.98  Aligned_cols=162  Identities=20%  Similarity=0.248  Sum_probs=96.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+|+|++....             +.+.+++| .|....                .+..    
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~-------------v~~~~~tT-~d~~~~----------------~i~~----  233 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVY-------------AADQLFAT-LDPTTR----------------RLDL----  233 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCccc-cCCEEE----------------EEEe----
Confidence            4588999999999999999999986421             22222222 110000                0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                     ..+..+.||||||+.+-....... .+...+. ...+|++++|+|+++...... .......+..
T Consensus       234 ---------------~~~~~i~l~DT~G~~~~l~~~lie-~f~~tle~~~~ADlil~VvD~s~~~~~~~-~~~~~~~L~~  296 (351)
T TIGR03156       234 ---------------PDGGEVLLTDTVGFIRDLPHELVA-AFRATLEEVREADLLLHVVDASDPDREEQ-IEAVEKVLEE  296 (351)
T ss_pred             ---------------CCCceEEEEecCcccccCCHHHHH-HHHHHHHHHHhCCEEEEEEECCCCchHHH-HHHHHHHHHH
Confidence                           124588999999984421111111 1222221 135799999999976543221 1111222233


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      +...++|+++|+||+|+.......    ...                         .  ...+++++||++|.|+++|++
T Consensus       297 l~~~~~piIlV~NK~Dl~~~~~v~----~~~-------------------------~--~~~~~i~iSAktg~GI~eL~~  345 (351)
T TIGR03156       297 LGAEDIPQLLVYNKIDLLDEPRIE----RLE-------------------------E--GYPEAVFVSAKTGEGLDLLLE  345 (351)
T ss_pred             hccCCCCEEEEEEeecCCChHhHH----HHH-------------------------h--CCCCEEEEEccCCCCHHHHHH
Confidence            333478999999999997643211    000                         0  124689999999999999999


Q ss_pred             HHHHH
Q 020549          307 AVEES  311 (324)
Q Consensus       307 ~i~~~  311 (324)
                      .|.+.
T Consensus       346 ~I~~~  350 (351)
T TIGR03156       346 AIAER  350 (351)
T ss_pred             HHHhh
Confidence            98764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.83  E-value=9.7e-20  Score=153.85  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=99.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+...+.+++...      +  ...+...+                           
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~------~--~~~i~~~~---------------------------   45 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFEN------Y--VTNIQGPN---------------------------   45 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeee------e--EEEEEecC---------------------------
Confidence            379999999999999999999987764433222100      0  00000000                           


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||||++++..       + ....-..+|++++|+|..+...  .. ..|...+   ..
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~-------~-~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~---~~  101 (187)
T cd04132          46 -------------GKIIELALWDTAGQEEYDR-------L-RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEV---NH  101 (187)
T ss_pred             -------------CcEEEEEEEECCCchhHHH-------H-HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence                         1134688999999877521       1 1111234689999999865321  11 1232111   11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHH--HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEW--MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                       ...+.|+|+|+||+|+.........  ......+.                      ......+++++||++|.||+++
T Consensus       102 -~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132         102 -FCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA----------------------KKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             -hCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH----------------------HHcCCcEEEEccCCCCCCHHHH
Confidence             1347899999999998753210000  00111110                      1112237899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 020549          305 FKAVEESAQEFMET  318 (324)
Q Consensus       305 ~~~i~~~~~~~~~~  318 (324)
                      |..+.+.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999988765543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.83  E-value=2.6e-20  Score=157.98  Aligned_cols=159  Identities=13%  Similarity=0.149  Sum_probs=93.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|.+|||||||+++|+...+...+.+++       .. .+..      .                 +...      
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~-------~~-~~~~------~-----------------~~~~------   43 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-------ED-SYRK------Q-----------------VVVD------   43 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-------Hh-hEEE------E-----------------EEEC------
Confidence            48999999999999999999876653221111       00 0000      0                 0000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~  228 (324)
                                  .....+.||||||++++..      ....+++  .+|++++|+|....  +.....|...+   ....
T Consensus        44 ------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i---~~~~  100 (190)
T cd04144          44 ------------GQPCMLEVLDTAGQEEYTA------LRDQWIR--EGEGFILVYSITSRSTFERVERFREQI---QRVK  100 (190)
T ss_pred             ------------CEEEEEEEEECCCchhhHH------HHHHHHH--hCCEEEEEEECCCHHHHHHHHHHHHHH---HHHh
Confidence                        1134688999999877521      1111222  24777777776543  23333343222   2222


Q ss_pred             ---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          229 ---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       229 ---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                         ..+.|+|+|+||+|+........  .....+.                      ..+ +.+++++||++|.|++++|
T Consensus       101 ~~~~~~~piilvgNK~Dl~~~~~v~~--~~~~~~~----------------------~~~-~~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144         101 DESAADVPIMIVGNKCDKVYEREVST--EEGAALA----------------------RRL-GCEFIEASAKTNVNVERAF  155 (190)
T ss_pred             cccCCCCCEEEEEEChhccccCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHH
Confidence               24689999999999965322100  0011111                      111 3679999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      ..|.+.+..
T Consensus       156 ~~l~~~l~~  164 (190)
T cd04144         156 YTLVRALRQ  164 (190)
T ss_pred             HHHHHHHHH
Confidence            999987753

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01889 SelB_euk SelB subfamily

Probab=99.83  E-value=1.5e-19  Score=153.58  Aligned_cols=119  Identities=22%  Similarity=0.252  Sum_probs=75.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      +..+.||||||+..+.         ...+.. ..+|.+++|+|+..+.......  .+   ......+.|+++|+||+|+
T Consensus        67 ~~~~~i~DtpG~~~~~---------~~~~~~~~~~d~vi~VvD~~~~~~~~~~~--~~---~~~~~~~~~~iiv~NK~Dl  132 (192)
T cd01889          67 NLQITLVDCPGHASLI---------RTIIGGAQIIDLMLLVVDATKGIQTQTAE--CL---VIGEILCKKLIVVLNKIDL  132 (192)
T ss_pred             CceEEEEECCCcHHHH---------HHHHHHHhhCCEEEEEEECCCCccHHHHH--HH---HHHHHcCCCEEEEEECccc
Confidence            6789999999985431         111221 3468999999998876544321  11   1222347899999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ..........+.+..                 .+...+.. .....+++++||++|.|+++|++.|...++.
T Consensus       133 ~~~~~~~~~~~~~~~-----------------~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         133 IPEEERERKIEKMKK-----------------KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             CCHHHHHHHHHHHHH-----------------HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            865433222222221                 11100001 0235789999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01878 HflX HflX subfamily

Probab=99.83  E-value=1.9e-19  Score=154.31  Aligned_cols=161  Identities=20%  Similarity=0.246  Sum_probs=96.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .-++|+|+|++|||||||+|+|++..+...             ..++++ ++...                ..+..    
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-------------~~~~~t-~~~~~----------------~~~~~----   85 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAE-------------DQLFAT-LDPTT----------------RRLRL----   85 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccC-------------Ccccee-cccee----------------EEEEe----
Confidence            347899999999999999999998753211             111111 00000                00000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCch--hHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPM--TFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~--~~~~~~~~~~  224 (324)
                                     .....+.||||||+.+..... ....+...+. ...+|++++|+|+.......  ..|...+   
T Consensus        86 ---------------~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l---  146 (204)
T cd01878          86 ---------------PDGREVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVL---  146 (204)
T ss_pred             ---------------cCCceEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHH---
Confidence                           113478999999985431111 1111111111 13468999999997654322  2232222   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+...++|+++|+||+|+.......   ..                           ......+++++||++|.|++++
T Consensus       147 ~~~~~~~~~viiV~NK~Dl~~~~~~~---~~---------------------------~~~~~~~~~~~Sa~~~~gi~~l  196 (204)
T cd01878         147 KELGAEDIPMILVLNKIDLLDDEELE---ER---------------------------LEAGRPDAVFISAKTGEGLDEL  196 (204)
T ss_pred             HHcCcCCCCEEEEEEccccCChHHHH---HH---------------------------hhcCCCceEEEEcCCCCCHHHH
Confidence            33333468999999999998754321   00                           0113468999999999999999


Q ss_pred             HHHHHHH
Q 020549          305 FKAVEES  311 (324)
Q Consensus       305 ~~~i~~~  311 (324)
                      ++.|...
T Consensus       197 ~~~L~~~  203 (204)
T cd01878         197 LEAIEEL  203 (204)
T ss_pred             HHHHHhh
Confidence            9998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01875 RhoG RhoG subfamily

Probab=99.83  E-value=4e-20  Score=156.94  Aligned_cols=173  Identities=16%  Similarity=0.183  Sum_probs=98.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|..|||||||+.++....|...+.+++...      +.....++                             
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~------~~~~~~~~-----------------------------   47 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN------YSAQTAVD-----------------------------   47 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee------eEEEEEEC-----------------------------
Confidence            3689999999999999999999988765444333110      00000000                             


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchh-HHHhHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMT-FMSNMLYACS  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~-~~~~~~~~~~  225 (324)
                                    .....+.||||||++++..      ....++  ..+|++|+|.|.  ..++.... .|...+   .
T Consensus        48 --------------~~~~~l~i~Dt~G~e~~~~------l~~~~~--~~a~~~ilvydit~~~Sf~~~~~~w~~~i---~  102 (191)
T cd01875          48 --------------GRTVSLNLWDTAGQEEYDR------LRTLSY--PQTNVFIICFSIASPSSYENVRHKWHPEV---C  102 (191)
T ss_pred             --------------CEEEEEEEEECCCchhhhh------hhhhhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHH---H
Confidence                          2246788999999988621      111122  235666666665  44444443 343322   1


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      . ...+.|++||+||+|+.+.....+...... +.   ......+..+++        .....+++++||++|.||+++|
T Consensus       103 ~-~~~~~piilvgNK~DL~~~~~~~~~~~~~~-~~---~v~~~~~~~~a~--------~~~~~~~~e~SAk~g~~v~e~f  169 (191)
T cd01875         103 H-HCPNVPILLVGTKKDLRNDADTLKKLKEQG-QA---PITPQQGGALAK--------QIHAVKYLECSALNQDGVKEVF  169 (191)
T ss_pred             h-hCCCCCEEEEEeChhhhcChhhHHHHhhcc-CC---CCCHHHHHHHHH--------HcCCcEEEEeCCCCCCCHHHHH
Confidence            1 124799999999999965432111110000 00   000001111111        1123579999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      ..|++.+..
T Consensus       170 ~~l~~~~~~  178 (191)
T cd01875         170 AEAVRAVLN  178 (191)
T ss_pred             HHHHHHHhc
Confidence            999987743

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.83  E-value=1.1e-19  Score=150.43  Aligned_cols=160  Identities=17%  Similarity=0.229  Sum_probs=96.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+...+.+++            +..+...                  .+...     
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~------------~~~~~~~------------------~~~~~-----   47 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI------------GVDFKIR------------------TIELD-----   47 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc------------ceeEEEE------------------EEEEC-----
Confidence            689999999999999999999876653221111            0000000                  00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+  ..+|++++|+|..+..  .....|   +..+...
T Consensus        48 -------------~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~l~~~---~~~~~~~  103 (166)
T cd01869          48 -------------GKTIKLQIWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQW---LQEIDRY  103 (166)
T ss_pred             -------------CEEEEEEEEECCCcHhHHH------HHHHHh--CcCCEEEEEEECcCHHHHHhHHHH---HHHHHHh
Confidence                         1135788999999876521      111112  3468999999986522  222223   3222333


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      . ..+.+++++||++|.|++++|..
T Consensus       104 ~~~~~~~iiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~~~~~  158 (166)
T cd01869         104 ASENVNKLLVGNKCDLTDKRVVD--YSEAQEFA----------------------D-ELGIPFLETSAKNATNVEQAFMT  158 (166)
T ss_pred             CCCCCcEEEEEEChhcccccCCC--HHHHHHHH----------------------H-HcCCeEEEEECCCCcCHHHHHHH
Confidence            33568999999999987543210  01111111                      1 12468999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |.+.+.
T Consensus       159 i~~~~~  164 (166)
T cd01869         159 MAREIK  164 (166)
T ss_pred             HHHHHH
Confidence            998764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK04213 GTP-binding protein; Provisional

Probab=99.83  E-value=1.8e-19  Score=153.99  Aligned_cols=173  Identities=20%  Similarity=0.183  Sum_probs=97.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|++|||||||+|+|++..+..+.             .++.+ .+..                    .     
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~-------------~~~~t-~~~~--------------------~-----   48 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGK-------------RPGVT-RKPN--------------------H-----   48 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCC-------------CCcee-eCce--------------------E-----
Confidence            4578999999999999999999987543221             11111 0000                    0     


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-----hhhHHHHHHHHh-c-cCCcEEEEEEcCCCCCCchhHHHh-
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-----SASGAIITEAFA-S-TFPTVVTYVVDTPRSANPMTFMSN-  219 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~-~-~~~d~iv~vvD~~~~~~~~~~~~~-  219 (324)
                                     ....++.+|||||+......     ......+..++. . ..++++++|+|+.........|.. 
T Consensus        49 ---------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~  113 (201)
T PRK04213         49 ---------------YDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGR  113 (201)
T ss_pred             ---------------EeecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccC
Confidence                           00116889999996332100     011112222332 1 235899999998654322122210 


Q ss_pred             -----HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc--cCceee
Q 020549          220 -----MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVG  292 (324)
Q Consensus       220 -----~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~iv~  292 (324)
                           .......+...++|+++|+||+|+....  .+...++.   +              .++..  ..+.  ..++++
T Consensus       114 ~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~---~--------------~~~~~--~~~~~~~~~~~~  172 (201)
T PRK04213        114 GEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIA---E--------------RLGLY--PPWRQWQDIIAP  172 (201)
T ss_pred             CCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHH---H--------------HhcCC--ccccccCCcEEE
Confidence                 0111233445689999999999997643  11111111   1              11100  0000  136899


Q ss_pred             eccccCCChHHHHHHHHHHHHHHH
Q 020549          293 VSSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       293 vSA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                      +||++| |++++++.|.+.+++..
T Consensus       173 ~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        173 ISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             EecccC-CHHHHHHHHHHhhcCcc
Confidence            999999 99999999999876543

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.5e-20  Score=154.98  Aligned_cols=166  Identities=16%  Similarity=0.195  Sum_probs=115.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      -...++|+++|.+|+|||-|+.++....|......+|     ++.-.+.+..++                          
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTI-----Gvef~t~t~~vd--------------------------   59 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTI-----GVEFATRTVNVD--------------------------   59 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccce-----eEEEEeeceeec--------------------------
Confidence            4567899999999999999999999999987665554     232222111111                          


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       .+.++.+||||+||++|.      .....+.+.+.+.++||+|.-+..++....|..++   +
T Consensus        60 -----------------~k~vkaqIWDTAGQERyr------AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~EL---R  113 (222)
T KOG0087|consen   60 -----------------GKTVKAQIWDTAGQERYR------AITSAYYRGAVGALLVYDITRRQTFENVERWLKEL---R  113 (222)
T ss_pred             -----------------CcEEEEeeecccchhhhc------cccchhhcccceeEEEEechhHHHHHHHHHHHHHH---H
Confidence                             335678999999999972      12223344455568888888888887777775444   5


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++++++|+||+||.+...+.  .++-+.              +++         .++..++++||+.+.||+.+|
T Consensus       114 dhad~nivimLvGNK~DL~~lraV~--te~~k~--------------~Ae---------~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen  114 DHADSNIVIMLVGNKSDLNHLRAVP--TEDGKA--------------FAE---------KEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             hcCCCCeEEEEeecchhhhhccccc--hhhhHh--------------HHH---------hcCceEEEecccccccHHHHH
Confidence            5666789999999999998743220  011111              111         135678999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      ..+...+-
T Consensus       169 ~~~l~~I~  176 (222)
T KOG0087|consen  169 ERVLTEIY  176 (222)
T ss_pred             HHHHHHHH
Confidence            98887664

>cd04124 RabL2 RabL2 subfamily

Probab=99.82  E-value=2.4e-19  Score=147.90  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=95.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++|++..+......++.     ..-.....                         ...     
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~-----   45 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYA-----LTLYKHNA-------------------------KFE-----   45 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcee-----eEEEEEEE-------------------------EEC-----
Confidence            3799999999999999999998876543211110     00000000                         000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||++++..      .....+  ..+|++++|+|......  ....|...+   .. 
T Consensus        46 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~~-  100 (161)
T cd04124          46 -------------GKTILVDFWDTAGQERFQT------MHASYY--HKAHACILVFDVTRKITYKNLSKWYEEL---RE-  100 (161)
T ss_pred             -------------CEEEEEEEEeCCCchhhhh------hhHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHH---HH-
Confidence                         1245788999999877521      111112  34689999999865432  122232211   11 


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.... .    .....+.                      +. ...+++++||++|.|++++|+.
T Consensus       101 ~~~~~p~ivv~nK~Dl~~~~-~----~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124         101 YRPEIPCIVVANKIDLDPSV-T----QKKFNFA----------------------EK-HNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             hCCCCcEEEEEECccCchhH-H----HHHHHHH----------------------HH-cCCeEEEEeCCCCCCHHHHHHH
Confidence            12378999999999985321 0    1111010                      11 1468999999999999999999


Q ss_pred             HHHHHHHH
Q 020549          308 VEESAQEF  315 (324)
Q Consensus       308 i~~~~~~~  315 (324)
                      +.+.+.++
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99877653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00157 Rho Rho (Ras homology) family

Probab=99.82  E-value=6e-20  Score=152.48  Aligned_cols=170  Identities=16%  Similarity=0.173  Sum_probs=95.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.+++.......        .                       ...     
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------~-----------------------~~~-----   44 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT--------V-----------------------TVD-----   44 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE--------E-----------------------EEC-----
Confidence            4799999999999999999999876433322221100000        0                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   .....+.+|||||+.++......        ....+|++++++|..+...-......++..+.. ..
T Consensus        45 -------------~~~~~l~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~  102 (171)
T cd00157          45 -------------GKQVNLGLWDTAGQEEYDRLRPL--------SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH-YC  102 (171)
T ss_pred             -------------CEEEEEEEEeCCCcccccccchh--------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hC
Confidence                         12457889999999875221111        113468999999986532211111111211111 22


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .+.|+++|+||+|+.............             ...+.......+.......+++++||++|.|++++++.|.
T Consensus       103 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  169 (171)
T cd00157         103 PNVPIILVGTKIDLRDDENTLKKLEKG-------------KEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI  169 (171)
T ss_pred             CCCCEEEEEccHHhhhchhhhhhcccC-------------CCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence            369999999999998765332110000             0000000000011223334899999999999999999987


Q ss_pred             H
Q 020549          310 E  310 (324)
Q Consensus       310 ~  310 (324)
                      +
T Consensus       170 ~  170 (171)
T cd00157         170 R  170 (171)
T ss_pred             h
Confidence            5

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.82  E-value=5.9e-20  Score=152.08  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=67.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      +..+.+|||||+.++..      .....+  ..+|++++|+|+...... ......+. .+......++|+++|+||+|+
T Consensus        49 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~~~~~v~vvd~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~  119 (167)
T cd04160          49 NARLKFWDLGGQESLRS------LWDKYY--AECHAIIYVIDSTDRERF-EESKSALEKVLRNEALEGVPLLILANKQDL  119 (167)
T ss_pred             CEEEEEEECCCChhhHH------HHHHHh--CCCCEEEEEEECchHHHH-HHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence            56889999999876521      111112  346899999998653211 11111111 111112357999999999998


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      .......+....+....+              .      ......+++++||++|+|++++++.|.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~--------------~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         120 PDALSVEEIKEVFQDKAE--------------E------IGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             ccCCCHHHHHHHhccccc--------------c------ccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            764322111111110000              0      0012358999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04135 Tc10 TC10 subfamily

Probab=99.82  E-value=6.9e-20  Score=152.75  Aligned_cols=170  Identities=16%  Similarity=0.165  Sum_probs=95.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|+|||||+++|.+..+...+.+++..      .+  ...+.                       ..     
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~------~~--~~~~~-----------------------~~-----   44 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD------HY--AVSVT-----------------------VG-----   44 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee------ee--EEEEE-----------------------EC-----
Confidence            37999999999999999999988765433222100      00  00000                       00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||||+.++.....        ..-..+|++++++|..+.-.  .. ..|...+   ..
T Consensus        45 -------------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l---~~  100 (174)
T cd04135          45 -------------GKQYLLGLYDTAGQEDYDRLRP--------LSYPMTDVFLICFSVVNPASFQNVKEEWVPEL---KE  100 (174)
T ss_pred             -------------CEEEEEEEEeCCCccccccccc--------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHH---Hh
Confidence                         1134578999999877521110        11134578888887754321  11 1232222   22


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      . ..+.|+++|+||+|+.+............            ........+..+.......+++++||++|.||+++|+
T Consensus       101 ~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~  167 (174)
T cd04135         101 Y-APNVPYLLVGTQIDLRDDPKTLARLNDMK------------EKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFD  167 (174)
T ss_pred             h-CCCCCEEEEeEchhhhcChhhHHHHhhcc------------CCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHH
Confidence            2 46799999999999875432211111000            0000011111111122335799999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .+++.+
T Consensus       168 ~~~~~~  173 (174)
T cd04135         168 EAILAI  173 (174)
T ss_pred             HHHHHh
Confidence            998764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.82  E-value=7.7e-20  Score=152.87  Aligned_cols=169  Identities=15%  Similarity=0.183  Sum_probs=95.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+.++++..+...+.+++..        .+...+.                       ..     
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~--------~~~~~~~-----------------------~~-----   45 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD--------NYSANVM-----------------------VD-----   45 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee--------eeEEEEE-----------------------EC-----
Confidence            57999999999999999999988776544332200        0000000                       00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||||+.++..       +... .-..+|++|+|+|..+.  +... ..|...+   ..
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~---~~  101 (174)
T cd01871          46 -------------GKPVNLGLWDTAGQEDYDR-------LRPL-SYPQTDVFLICFSLVSPASFENVRAKWYPEV---RH  101 (174)
T ss_pred             -------------CEEEEEEEEECCCchhhhh-------hhhh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence                         1245788999999877521       1111 11346888888887542  2222 1343222   22


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      . ..+.|+++|+||+|+.+.....   +.+.   ..  ..    ..+..+.+..+...+...++++|||++|.|++++|+
T Consensus       102 ~-~~~~piilvgnK~Dl~~~~~~~---~~~~---~~--~~----~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  168 (174)
T cd01871         102 H-CPNTPIILVGTKLDLRDDKDTI---EKLK---EK--KL----TPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFD  168 (174)
T ss_pred             h-CCCCCEEEEeeChhhccChhhH---HHHh---hc--cC----CCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHH
Confidence            1 2479999999999996532111   0010   00  00    000011111111112335889999999999999999


Q ss_pred             HHHHH
Q 020549          307 AVEES  311 (324)
Q Consensus       307 ~i~~~  311 (324)
                      .+.+.
T Consensus       169 ~l~~~  173 (174)
T cd01871         169 EAIRA  173 (174)
T ss_pred             HHHHh
Confidence            98763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.82  E-value=1.5e-19  Score=152.12  Aligned_cols=170  Identities=14%  Similarity=0.152  Sum_probs=98.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|.+|||||||++++....+...+.+++...      +  ...+.+.                          
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~------~--~~~~~~~--------------------------   49 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN------Y--TASFEID--------------------------   49 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee------e--EEEEEEC--------------------------
Confidence            45789999999999999999999988766544433110      0  0000000                          


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCch-hHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPM-TFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~-~~~~~~~~~~  224 (324)
                                     .....+.||||+|++++..       +... .-..+|++++|.|...  ++... ..|...+   
T Consensus        50 ---------------~~~~~l~iwDtaG~e~~~~-------~~~~-~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i---  103 (182)
T cd04172          50 ---------------TQRIELSLWDTSGSPYYDN-------VRPL-SYPDSDAVLICFDISRPETLDSVLKKWKGEI---  103 (182)
T ss_pred             ---------------CEEEEEEEEECCCchhhHh-------hhhh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---
Confidence                           2245789999999877621       1111 1133577777777644  34333 3454333   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHh--cCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAIS--SDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I  301 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v  301 (324)
                      ... ..+.|+|||+||+|+......  .    ..+...-.  -....+..++++        ....++++|||++|.| |
T Consensus       104 ~~~-~~~~piilVgNK~DL~~~~~~--~----~~~~~~~~~~v~~~~~~~~a~~--------~~~~~~~E~SAk~~~n~v  168 (182)
T cd04172         104 QEF-CPNTKMLLVGCKSDLRTDLTT--L----VELSNHRQTPVSYDQGANMAKQ--------IGAATYIECSALQSENSV  168 (182)
T ss_pred             HHH-CCCCCEEEEeEChhhhcChhh--H----HHHHhcCCCCCCHHHHHHHHHH--------cCCCEEEECCcCCCCCCH
Confidence            222 246899999999998642110  0    00000000  000011222222        2224799999999998 9


Q ss_pred             HHHHHHHHHHH
Q 020549          302 EAYFKAVEESA  312 (324)
Q Consensus       302 ~~l~~~i~~~~  312 (324)
                      +++|..+.+..
T Consensus       169 ~~~F~~~~~~~  179 (182)
T cd04172         169 RDIFHVATLAC  179 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999998853

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04142 RRP22 RRP22 subfamily

Probab=99.82  E-value=5.7e-20  Score=156.76  Aligned_cols=167  Identities=18%  Similarity=0.194  Sum_probs=96.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|.+|||||||+++|++..+...+.+++       ....+..                       .+...     
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~-------~~~~~~~-----------------------~i~~~-----   45 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTE-------HRRLYRP-----------------------AVVLS-----   45 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcc-------cccccee-----------------------EEEEC-----
Confidence            379999999999999999999887754332211       0000000                       00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHH-H-hccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-F-ASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~-~-~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                                   +....+.||||||+.++.  ...+...... . .-..+|++++|+|......  ....|...+   .
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~--~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i---~  107 (198)
T cd04142          46 -------------GRVYDLHILDVPNMQRYP--GTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQI---L  107 (198)
T ss_pred             -------------CEEEEEEEEeCCCcccCC--ccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence                         123567899999987642  1111111111 1 1134799999999865321  112222111   1


Q ss_pred             HHh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       226 ~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      ...   ..++|+++|+||+|+.......  .+....+.+                     . ...++++++||++|.||+
T Consensus       108 ~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~~~~~~~~---------------------~-~~~~~~~e~Sak~g~~v~  163 (198)
T cd04142         108 ETRPAGNKEPPIVVVGNKRDQQRHRFAP--RHVLSVLVR---------------------K-SWKCGYLECSAKYNWHIL  163 (198)
T ss_pred             HhcccCCCCCCEEEEEECcccccccccc--HHHHHHHHH---------------------H-hcCCcEEEecCCCCCCHH
Confidence            111   3568999999999996542110  011111110                     0 124789999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          303 AYFKAVEESAQ  313 (324)
Q Consensus       303 ~l~~~i~~~~~  313 (324)
                      ++|..+.+.+.
T Consensus       164 ~lf~~i~~~~~  174 (198)
T cd04142         164 LLFKELLISAT  174 (198)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.82  E-value=1.2e-19  Score=149.89  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=96.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+...+.+++ +.+..      ...+.+.                            
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~-~~~~~------~~~~~~~----------------------------   45 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI-GIDYG------VKKVSVR----------------------------   45 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc-ceeEE------EEEEEEC----------------------------
Confidence            379999999999999999999987654332211 00000      0000000                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..       +...+ -..+|++++|+|.+..  +.....|...+.  ...
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~-------~~~~~-~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~--~~~  102 (168)
T cd04119          46 -------------NKEVRVNFFDLSGHPEYLE-------VRNEF-YKDTQGVLLVYDVTDRQSFEALDSWLKEMK--QEG  102 (168)
T ss_pred             -------------CeEEEEEEEECCccHHHHH-------HHHHH-hccCCEEEEEEECCCHHHHHhHHHHHHHHH--Hhc
Confidence                         1245788999999866521       11111 1346899999998653  222233433221  111


Q ss_pred             hh----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          228 YK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       228 ~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      ..    .+.|+++|+||+|+.+....  .......+..                     .  ...+++++||++|.|+++
T Consensus       103 ~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~  157 (168)
T cd04119         103 GPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAE---------------------S--KGFKYFETSACTGEGVNE  157 (168)
T ss_pred             cccccCCCceEEEEEEchhccccccc--CHHHHHHHHH---------------------H--cCCeEEEEECCCCCCHHH
Confidence            11    46899999999999742211  0011111100                     1  136799999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      +|+.|.+.+.
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.82  E-value=8.6e-20  Score=152.20  Aligned_cols=168  Identities=16%  Similarity=0.194  Sum_probs=94.5

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChH
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK  151 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  151 (324)
                      |+|+|++|||||||+++|++..+...+.+++...      +  ...+.                       ..       
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~------~--~~~~~-----------------------~~-------   42 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN------Y--SADVE-----------------------VD-------   42 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee------e--eEEEE-----------------------EC-------
Confidence            5899999999999999999987754332221100      0  00000                       00       


Q ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHHHHHHh
Q 020549          152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYACSILY  228 (324)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~~~~~~  228 (324)
                                 .....+.||||||+.++..       +... .-..+|++++++|....  +.... .|...+   .. .
T Consensus        43 -----------~~~~~~~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i---~~-~   99 (174)
T smart00174       43 -----------GKPVELGLWDTAGQEDYDR-------LRPL-SYPDTDVFLICFSVDSPASFENVKEKWYPEV---KH-F   99 (174)
T ss_pred             -----------CEEEEEEEEECCCCcccch-------hchh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---Hh-h
Confidence                       1235688999999877521       1111 11346899999887643  22221 232211   11 1


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+.......+.....          ..  ..+..+.+..+.......+++++||++|.||+++|..|
T Consensus       100 ~~~~piilv~nK~Dl~~~~~~~~~~~~~----------~~--~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l  167 (174)
T smart00174      100 CPNTPIILVGTKLDLREDKSTLRELSKQ----------KQ--EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEA  167 (174)
T ss_pred             CCCCCEEEEecChhhhhChhhhhhhhcc----------cC--CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Confidence            2479999999999997633211000000          00  00001111111122233479999999999999999999


Q ss_pred             HHHH
Q 020549          309 EESA  312 (324)
Q Consensus       309 ~~~~  312 (324)
                      .+.+
T Consensus       168 ~~~~  171 (174)
T smart00174      168 IRAA  171 (174)
T ss_pred             HHHh
Confidence            8765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04121 Rab40 Rab40 subfamily

Probab=99.82  E-value=6.5e-20  Score=155.10  Aligned_cols=162  Identities=15%  Similarity=0.119  Sum_probs=99.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|..|||||||+.+|....+...+.+++     +.. + ....+.                       ..   
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~-----~~~-~-~~~~i~-----------------------~~---   51 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM-----GID-Y-KTTTIL-----------------------LD---   51 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-----eeE-E-EEEEEE-----------------------EC---
Confidence            45789999999999999999999876643221110     000 0 000000                       00   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..      ....++  ..+|++|+|+|...  ++.....|...+   .
T Consensus        52 ---------------~~~~~l~iwDt~G~~~~~~------l~~~~~--~~ad~illVfD~t~~~Sf~~~~~w~~~i---~  105 (189)
T cd04121          52 ---------------GRRVKLQLWDTSGQGRFCT------IFRSYS--RGAQGIILVYDITNRWSFDGIDRWIKEI---D  105 (189)
T ss_pred             ---------------CEEEEEEEEeCCCcHHHHH------HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence                           1246788999999877521      111222  24577777777644  444455554444   2


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .. ..+.|+|||+||+|+.....+.  .++.+.+.+                     .  .+.++++|||++|.||+++|
T Consensus       106 ~~-~~~~piilVGNK~DL~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~SAk~g~~V~~~F  159 (189)
T cd04121         106 EH-APGVPKILVGNRLHLAFKRQVA--TEQAQAYAE---------------------R--NGMTFFEVSPLCNFNITESF  159 (189)
T ss_pred             Hh-CCCCCEEEEEECccchhccCCC--HHHHHHHHH---------------------H--cCCEEEEecCCCCCCHHHHH
Confidence            22 2579999999999996532110  111111111                     1  24689999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+..
T Consensus       160 ~~l~~~i~~  168 (189)
T cd04121         160 TELARIVLM  168 (189)
T ss_pred             HHHHHHHHH
Confidence            999987754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04134 Rho3 Rho3 subfamily

Probab=99.82  E-value=7.6e-20  Score=154.96  Aligned_cols=171  Identities=19%  Similarity=0.231  Sum_probs=96.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|++|||||||+++|.+..+...+.+++..      .+  ...                       +...      
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~------~~--~~~-----------------------i~~~------   44 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFE------NY--VHD-----------------------IFVD------   44 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCccee------ee--EEE-----------------------EEEC------
Confidence            6999999999999999999988776433222100      00  000                       0000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEE--EcCCCCCCchh-HHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYV--VDTPRSANPMT-FMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~v--vD~~~~~~~~~-~~~~~~~~~~~~  227 (324)
                                  .....+.||||||+.++..   ...   ..+  ..+|++++|  ++...++.... .|...+   .. 
T Consensus        45 ------------~~~~~l~i~Dt~G~~~~~~---l~~---~~~--~~a~~~ilv~dv~~~~sf~~~~~~~~~~i---~~-  100 (189)
T cd04134          45 ------------GLHIELSLWDTAGQEEFDR---LRS---LSY--ADTDVIMLCFSVDSPDSLENVESKWLGEI---RE-  100 (189)
T ss_pred             ------------CEEEEEEEEECCCChhccc---ccc---ccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH-
Confidence                        1245789999999877521   100   111  234566655  55555554433 343322   21 


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......+......       ..     ....+.+..+.......+++++||++|.||+++|..
T Consensus       101 ~~~~~piilvgNK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~  168 (189)
T cd04134         101 HCPGVKLVLVALKCDLREARNERDDLQRYG-------KH-----TISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTE  168 (189)
T ss_pred             hCCCCCEEEEEEChhhccChhhHHHHhhcc-------CC-----CCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHH
Confidence            124799999999999976543221111000       00     000000110111223367999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+..
T Consensus       169 l~~~~~~  175 (189)
T cd04134         169 AARVALN  175 (189)
T ss_pred             HHHHHhc
Confidence            9987753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.82  E-value=1.3e-19  Score=152.63  Aligned_cols=185  Identities=21%  Similarity=0.214  Sum_probs=103.3

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCc-ccccccccCh
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSLNLFTT  150 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~  150 (324)
                      |+|+|.+|||||||+|+|++.........+.........  .       ...        .-+...... ....      
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~--~-------~~~--------~~~~~~~~~~~~~~------   58 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVL--K-------EER--------ERGITIKSGVATFE------   58 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCC--H-------HHH--------HcCCCeecceEEEe------
Confidence            899999999999999999998766543222211000000  0       000        000000000 0000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~  230 (324)
                                  .....+.||||||+.++..      .....+  ..+|++++|+|+.++.....     ...+..+...
T Consensus        59 ------------~~~~~~~liDtpG~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~  113 (189)
T cd00881          59 ------------WPDRRVNFIDTPGHEDFSS------EVIRGL--SVSDGAILVVDANEGVQPQT-----REHLRIAREG  113 (189)
T ss_pred             ------------eCCEEEEEEeCCCcHHHHH------HHHHHH--HhcCEEEEEEECCCCCcHHH-----HHHHHHHHHC
Confidence                        1256789999999876411      111112  24689999999987654332     1112334446


Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      +.|+++|+||+|+............+....+......       .+...  .......+++++||++|.|+++++..|..
T Consensus       114 ~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~  184 (189)
T cd00881         114 GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS-------TKEEG--TRNGLLVPIVPGSALTGIGVEELLEAIVE  184 (189)
T ss_pred             CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc-------hhhhh--cccCCcceEEEEecccCcCHHHHHHHHHh
Confidence            8999999999999875433333333322111100000       00000  00123578999999999999999999998


Q ss_pred             HHH
Q 020549          311 SAQ  313 (324)
Q Consensus       311 ~~~  313 (324)
                      .++
T Consensus       185 ~l~  187 (189)
T cd00881         185 HLP  187 (189)
T ss_pred             hCC
Confidence            764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.82  E-value=3.4e-19  Score=152.67  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=73.0

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHHHHhhcC-CCeEEEeecccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV  243 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl  243 (324)
                      ..+.||||||+.++..      .+...+  ..+|++++|+|+..+ ...+...  .+   ..+...+ .|+++|+||+|+
T Consensus        83 ~~i~~iDtPG~~~~~~------~~~~~~--~~~D~~llVvd~~~~~~~~~t~~--~l---~~~~~~~~~~iiivvNK~Dl  149 (203)
T cd01888          83 RHVSFVDCPGHEILMA------TMLSGA--AVMDGALLLIAANEPCPQPQTSE--HL---AALEIMGLKHIIIVQNKIDL  149 (203)
T ss_pred             cEEEEEECCChHHHHH------HHHHhh--hcCCEEEEEEECCCCCCCcchHH--HH---HHHHHcCCCcEEEEEEchhc
Confidence            6789999999755411      111111  346999999999874 3333211  12   1222233 478999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                      ..........+.+..+..                     .+ ....+++++||++|+|+++|++.|.+.+++.
T Consensus       150 ~~~~~~~~~~~~i~~~~~---------------------~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         150 VKEEQALENYEQIKKFVK---------------------GTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             cCHHHHHHHHHHHHHHHh---------------------ccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            875433333333321111                     11 1346899999999999999999999877653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04133 Rop_like Rop subfamily

Probab=99.82  E-value=3.9e-20  Score=154.75  Aligned_cols=165  Identities=18%  Similarity=0.179  Sum_probs=96.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|+|||||+.+++...|...+.+++.. .       +...+.                       .      
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~-~-------~~~~~~-----------------------~------   44 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-N-------FSANVS-----------------------V------   44 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCccee-e-------eEEEEE-----------------------E------
Confidence            57999999999999999999998886544433310 0       000000                       0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEc--CCCCCCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD--TPRSANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD--~~~~~~~~-~~~~~~~~~~~~  226 (324)
                                  .....++.||||+|++++..  ..    ..+++  .++.+++|.|  ...++... ..|...+   ..
T Consensus        45 ------------~~~~v~l~i~Dt~G~~~~~~--~~----~~~~~--~a~~~ilvyd~~~~~Sf~~~~~~w~~~i---~~  101 (176)
T cd04133          45 ------------DGNTVNLGLWDTAGQEDYNR--LR----PLSYR--GADVFVLAFSLISRASYENVLKKWVPEL---RH  101 (176)
T ss_pred             ------------CCEEEEEEEEECCCCccccc--cc----hhhcC--CCcEEEEEEEcCCHHHHHHHHHHHHHHH---HH
Confidence                        02246789999999988621  11    11222  3455555555  45555554 4454333   22


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHH---HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEW---MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      .. .+.|+|||+||+|+.+.......   ...+.         ......++        ......++++|||++|.||++
T Consensus       102 ~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~---------~~~~~~~a--------~~~~~~~~~E~SAk~~~nV~~  163 (176)
T cd04133         102 YA-PNVPIVLVGTKLDLRDDKQYLADHPGASPIT---------TAQGEELR--------KQIGAAAYIECSSKTQQNVKA  163 (176)
T ss_pred             hC-CCCCEEEEEeChhhccChhhhhhccCCCCCC---------HHHHHHHH--------HHcCCCEEEECCCCcccCHHH
Confidence            22 47999999999999653210000   00000         00011111        111223689999999999999


Q ss_pred             HHHHHHHHH
Q 020549          304 YFKAVEESA  312 (324)
Q Consensus       304 l~~~i~~~~  312 (324)
                      +|..+++.+
T Consensus       164 ~F~~~~~~~  172 (176)
T cd04133         164 VFDAAIKVV  172 (176)
T ss_pred             HHHHHHHHH
Confidence            999999875

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.82  E-value=5.3e-20  Score=152.66  Aligned_cols=160  Identities=21%  Similarity=0.223  Sum_probs=95.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++++...+...+.+++-.   ........                           .      
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~---~~~~~~~~---------------------------~------   44 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV---EVHPLDFH---------------------------T------   44 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee---EEEEEEEE---------------------------E------
Confidence            47999999999999999999976654332221100   00000000                           0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                  ......+.+|||||+.++..   ...   ..+  ..+|++|+|+|......- ......+..+.... 
T Consensus        45 ------------~~~~~~l~i~Dt~G~~~~~~---~~~---~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~-  102 (166)
T cd00877          45 ------------NRGKIRFNVWDTAGQEKFGG---LRD---GYY--IGGQCAIIMFDVTSRVTY-KNVPNWHRDLVRVC-  102 (166)
T ss_pred             ------------CCEEEEEEEEECCCChhhcc---ccH---HHh--cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhC-
Confidence                        01245788999999877521   111   111  236888999998653211 11111222222222 


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .+.|+++|+||+|+.......+. ..+.                         . ....+++++||++|.|++++|+.|.
T Consensus       103 ~~~piiiv~nK~Dl~~~~~~~~~-~~~~-------------------------~-~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877         103 GNIPIVLCGNKVDIKDRKVKAKQ-ITFH-------------------------R-KKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             CCCcEEEEEEchhcccccCCHHH-HHHH-------------------------H-HcCCEEEEEeCCCCCChHHHHHHHH
Confidence            27999999999999743211110 0000                         1 1346899999999999999999999


Q ss_pred             HHHHH
Q 020549          310 ESAQE  314 (324)
Q Consensus       310 ~~~~~  314 (324)
                      +.+..
T Consensus       156 ~~~~~  160 (166)
T cd00877         156 RKLLG  160 (166)
T ss_pred             HHHHh
Confidence            88765

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01864 Rab19 Rab19 subfamily

Probab=99.82  E-value=6.1e-20  Score=151.86  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=95.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+++|.+..+...+..++     +.. .. .     .                  .+...    
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~-----~~~-~~-~-----~------------------~~~~~----   48 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI-----GVD-FT-M-----K------------------TLEIE----   48 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc-----ceE-EE-E-----E------------------EEEEC----
Confidence            4789999999999999999998876554221111     000 00 0     0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..      .....+  ..+|++++++|..+..  .....|...+   ..
T Consensus        49 --------------~~~~~l~i~D~~G~~~~~~------~~~~~~--~~~d~~llv~d~~~~~s~~~~~~~~~~i---~~  103 (165)
T cd01864          49 --------------GKRVKLQIWDTAGQERFRT------ITQSYY--RSANGAIIAYDITRRSSFESVPHWIEEV---EK  103 (165)
T ss_pred             --------------CEEEEEEEEECCChHHHHH------HHHHHh--ccCCEEEEEEECcCHHHHHhHHHHHHHH---HH
Confidence                          1124788999999866411      111111  3468999999986542  2222333222   23


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+......  ..+....+.                      .......++++||++|.|++++|+
T Consensus       104 ~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~~v~~~~~  159 (165)
T cd01864         104 YGASNVVLLLIGNKCDLEEQREV--LFEEACTLA----------------------EKNGMLAVLETSAKESQNVEEAFL  159 (165)
T ss_pred             hCCCCCcEEEEEECccccccccc--CHHHHHHHH----------------------HHcCCcEEEEEECCCCCCHHHHHH
Confidence            33457899999999999754321  011111111                      112335789999999999999999


Q ss_pred             HHHHH
Q 020549          307 AVEES  311 (324)
Q Consensus       307 ~i~~~  311 (324)
                      .|.+.
T Consensus       160 ~l~~~  164 (165)
T cd01864         160 LMATE  164 (165)
T ss_pred             HHHHh
Confidence            99865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=99.82  E-value=7.2e-20  Score=151.63  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=96.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+...+..++ +       ..+..    .                  .+...     
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~-~-------~~~~~----~------------------~~~~~-----   47 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI-G-------VEFGT----R------------------IIEVN-----   47 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccc-c-------eeEEE----E------------------EEEEC-----
Confidence            689999999999999999999886654322111 0       00000    0                  00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+  ..+|.+++|+|....  +.....|   +..+...
T Consensus        48 -------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~---~~~~~~~  103 (166)
T cd04122          48 -------------GQKIKLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRRSTYNHLSSW---LTDARNL  103 (166)
T ss_pred             -------------CEEEEEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence                         1245788999999877521      111222  246889999998653  2222233   2222233


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      . ....+++++||++|.|++++|..
T Consensus       104 ~~~~~~iiiv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~e~Sa~~~~~i~e~f~~  158 (166)
T cd04122         104 TNPNTVIFLIGNKADLEAQRDVT--YEEAKQFA----------------------D-ENGLLFLECSAKTGENVEDAFLE  158 (166)
T ss_pred             CCCCCeEEEEEECcccccccCcC--HHHHHHHH----------------------H-HcCCEEEEEECCCCCCHHHHHHH
Confidence            34568999999999997643210  01111111                      1 12468999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      +.+.+
T Consensus       159 l~~~~  163 (166)
T cd04122         159 TAKKI  163 (166)
T ss_pred             HHHHH
Confidence            98765

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.82  E-value=2.1e-19  Score=151.46  Aligned_cols=167  Identities=15%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||++++++..+... .+       +..       ++...                  +..    
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~-------t~~-------~~~~~------------------~~~----   44 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VP-------TKG-------FNTEK------------------IKV----   44 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CC-------ccc-------cceeE------------------EEe----
Confidence            357899999999999999999987655321 10       000       00000                  000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~  226 (324)
                       ..          .......+.||||||++++.  .    .....+  ..+|++++|+|+...... ......+. ....
T Consensus        45 -~~----------~~~~~~~l~l~Dt~G~~~~~--~----~~~~~~--~~~d~ii~v~D~~~~~~~-~~~~~~~~~i~~~  104 (183)
T cd04152          45 -SL----------GNSKGITFHFWDVGGQEKLR--P----LWKSYT--RCTDGIVFVVDSVDVERM-EEAKTELHKITRF  104 (183)
T ss_pred             -ec----------cCCCceEEEEEECCCcHhHH--H----HHHHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHHhh
Confidence             00          00235678999999986641  1    111111  346899999998664211 11111111 1122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ....++|+++|+||+|+.......+. ..+..+.                      .+  ....+++++||++|.|++++
T Consensus       105 ~~~~~~p~iiv~NK~D~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152         105 SENQGVPVLVLANKQDLPNALSVSEV-EKLLALH----------------------ELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             hhcCCCcEEEEEECcCccccCCHHHH-HHHhCcc----------------------ccCCCCceEEEEeecccCCCHHHH
Confidence            23457999999999998642111111 1111000                      01  11246899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      +..|.+.+.+
T Consensus       162 ~~~l~~~l~~  171 (183)
T cd04152         162 LEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHH
Confidence            9999988754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04176 Rap2 Rap2 subgroup

Probab=99.82  E-value=4.9e-20  Score=152.00  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=92.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.+|||||||++++++..+.....+++       ... +...+                       ...     
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-------~~~-~~~~~-----------------------~~~-----   45 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-------EDF-YRKEI-----------------------EVD-----   45 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-------hhe-EEEEE-----------------------EEC-----
Confidence            579999999999999999999887654322111       000 00000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||++++..  .    ...+++  .+|++++|+|..+.  +.....|...+.  ...
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~--~----~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~~--~~~  102 (163)
T cd04176          46 -------------SSPSVLEILDTAGTEQFAS--M----RDLYIK--NGQGFIVVYSLVNQQTFQDIKPMRDQIV--RVK  102 (163)
T ss_pred             -------------CEEEEEEEEECCCcccccc--h----HHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence                         1134678999999877622  1    111222  35778888776542  233333322221  111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+........  .....+.                      ... ..+++++||++|.|++++|..
T Consensus       103 ~~~~~piviv~nK~Dl~~~~~~~~--~~~~~~~----------------------~~~-~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd04176         103 GYEKVPIILVGNKVDLESEREVSS--AEGRALA----------------------EEW-GCPFMETSAKSKTMVNELFAE  157 (163)
T ss_pred             CCCCCCEEEEEECccchhcCccCH--HHHHHHH----------------------HHh-CCEEEEecCCCCCCHHHHHHH
Confidence            225799999999999865321100  0011110                      111 368899999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       158 l~~~l  162 (163)
T cd04176         158 IVRQM  162 (163)
T ss_pred             HHHhc
Confidence            98653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04149 Arf6 Arf6 subfamily

Probab=99.82  E-value=1.1e-19  Score=151.10  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||+++|....+.. ..       |++       .++...                  +.     
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~-------~t~-------g~~~~~------------------~~-----   49 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TI-------PTV-------GFNVET------------------VT-----   49 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-cc-------CCc-------ccceEE------------------EE-----
Confidence            45789999999999999999998754431 11       111       000000                  00     


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~  226 (324)
                                     .....+.||||||+.++.  ..    ....+  ..+|+++||+|+.....- ..+...+. .+..
T Consensus        50 ---------------~~~~~~~l~Dt~G~~~~~--~~----~~~~~--~~a~~ii~v~D~t~~~s~-~~~~~~~~~~~~~  105 (168)
T cd04149          50 ---------------YKNVKFNVWDVGGQDKIR--PL----WRHYY--TGTQGLIFVVDSADRDRI-DEARQELHRIIND  105 (168)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH--HH----HHHHh--ccCCEEEEEEeCCchhhH-HHHHHHHHHHhcC
Confidence                           125678999999987651  11    11112  346899999998763211 11111111 1111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|++||+||+|+.......+..+... +..                     ......+++++||++|.|++++|.
T Consensus       106 ~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~-~~~---------------------~~~~~~~~~~~SAk~g~gv~~~~~  163 (168)
T cd04149         106 REMRDALLLVFANKQDLPDAMKPHEIQEKLG-LTR---------------------IRDRNWYVQPSCATSGDGLYEGLT  163 (168)
T ss_pred             HhhcCCcEEEEEECcCCccCCCHHHHHHHcC-CCc---------------------cCCCcEEEEEeeCCCCCChHHHHH
Confidence            1124689999999999864311111111100 000                     001124689999999999999999


Q ss_pred             HHHH
Q 020549          307 AVEE  310 (324)
Q Consensus       307 ~i~~  310 (324)
                      .|.+
T Consensus       164 ~l~~  167 (168)
T cd04149         164 WLSS  167 (168)
T ss_pred             HHhc
Confidence            8864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=2.9e-19  Score=167.32  Aligned_cols=167  Identities=23%  Similarity=0.321  Sum_probs=102.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      -|+|+|.||||||||+++|++....             +..+|++|.                  .++.|.+..      
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k-------------Ia~ypfTTl------------------~PnlG~v~~------  202 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK-------------IANYHFTTL------------------VPNLGVVET------  202 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc-------------cccCCccee------------------ceEEEEEEE------
Confidence            6999999999999999999986532             344555541                  112222210      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                  .....+.||||||+.+...+ ..++....+.+  ..++++++|+|++..  ..+...+..+...+..+
T Consensus       203 ------------~~~~~~~laD~PGliega~~~~gLg~~fLrhi--er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y  268 (424)
T PRK12297        203 ------------DDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLY  268 (424)
T ss_pred             ------------eCCceEEEEECCCCcccccccchHHHHHHHHH--hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhh
Confidence                        11467999999998653211 12233333322  346899999998643  12222222222222222


Q ss_pred             hh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       228 ~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ..  .++|+++|+||+|+.....   ..+.+.                         +.+. .+++++||++++|+++|+
T Consensus       269 ~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~-------------------------~~l~-~~i~~iSA~tgeGI~eL~  319 (424)
T PRK12297        269 NPRLLERPQIVVANKMDLPEAEE---NLEEFK-------------------------EKLG-PKVFPISALTGQGLDELL  319 (424)
T ss_pred             chhccCCcEEEEEeCCCCcCCHH---HHHHHH-------------------------HHhC-CcEEEEeCCCCCCHHHHH
Confidence            21  4789999999999853321   111111                         1122 579999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          306 KAVEESAQEFME  317 (324)
Q Consensus       306 ~~i~~~~~~~~~  317 (324)
                      +.|.+.+...+.
T Consensus       320 ~~L~~~l~~~~~  331 (424)
T PRK12297        320 YAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHhCcc
Confidence            999998876543

>cd04163 Era Era subfamily

Probab=99.82  E-value=3.2e-19  Score=146.66  Aligned_cols=162  Identities=23%  Similarity=0.345  Sum_probs=98.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|+|||||+|+|++.....      ....      +.++    +...              .+...     
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~------~~~~------~~~~----~~~~--------------~~~~~-----   47 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISI------VSPK------PQTT----RNRI--------------RGIYT-----   47 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEe------ccCC------CCce----eceE--------------EEEEE-----
Confidence            4679999999999999999998764321      1111      1111    0000              00110     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||||+......  ....+.....  ...+|++++++|+.........+     ....
T Consensus        48 --------------~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~-----~~~~  106 (168)
T cd04163          48 --------------DDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEF-----ILEL  106 (168)
T ss_pred             --------------cCCeEEEEEECCCCCcchHH--HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHH-----HHHH
Confidence                          12467899999998765221  1111111111  13468999999998774333322     1123


Q ss_pred             HhhcCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      +...+.|+++|+||+|+.. .....++...+.                         ...+..+++++||+++.|+++++
T Consensus       107 ~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~~~~~l~  161 (168)
T cd04163         107 LKKSKTPVILVLNKIDLVKDKEDLLPLLEKLK-------------------------ELGPFAEIFPISALKGENVDELL  161 (168)
T ss_pred             HHHhCCCEEEEEEchhccccHHHHHHHHHHHH-------------------------hccCCCceEEEEeccCCChHHHH
Confidence            3445789999999999984 333333322222                         12235789999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      +.|.+.
T Consensus       162 ~~l~~~  167 (168)
T cd04163         162 EEIVKY  167 (168)
T ss_pred             HHHHhh
Confidence            999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.82  E-value=1.2e-19  Score=149.66  Aligned_cols=111  Identities=22%  Similarity=0.284  Sum_probs=68.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ...+.+|||||+..+..      .....+  ..+|++++|+|..+..  .....|...+   ... ..+.|+++|+||+|
T Consensus        51 ~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~---~~~-~~~~p~ilv~nK~D  118 (164)
T cd04101          51 TVELFIFDSAGQELYSD------MVSNYW--ESPSVFILVYDVSNKASFENCSRWVNKV---RTA-SKHMPGVLVGNKMD  118 (164)
T ss_pred             EEEEEEEECCCHHHHHH------HHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHH---HHh-CCCCCEEEEEECcc
Confidence            46789999999765411      111122  3569999999986532  1122332211   111 14689999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                      +.+........  ...+                       ....+.+++++||++|.|++++|+.|.+.+
T Consensus       119 l~~~~~~~~~~--~~~~-----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         119 LADKAEVTDAQ--AQAF-----------------------AQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             cccccCCCHHH--HHHH-----------------------HHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            97543211100  0100                       001246799999999999999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.82  E-value=4e-19  Score=147.07  Aligned_cols=118  Identities=19%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +.++.||||||+..+...      ....  ...+|++++|+|+.++.....+     ..+..+...++|+++|+||+|+.
T Consensus        49 ~~~~~iiDtpG~~~~~~~------~~~~--~~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~~p~ivv~NK~Dl~  115 (168)
T cd01887          49 IPGITFIDTPGHEAFTNM------RARG--ASLTDIAILVVAADDGVMPQTI-----EAIKLAKAANVPFIVALNKIDKP  115 (168)
T ss_pred             cceEEEEeCCCcHHHHHH------HHHH--HhhcCEEEEEEECCCCccHHHH-----HHHHHHHHcCCCEEEEEEceecc
Confidence            568999999998664210      1111  1346999999999876543331     11233445789999999999987


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      .... ......+..+...                 ..+.+....+++++||++|.|+++|++.|.+...
T Consensus       116 ~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         116 NANP-ERVKNELSELGLQ-----------------GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cccH-HHHHHHHHHhhcc-----------------ccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            5321 1111111110000                 0001223468999999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.81  E-value=3.7e-19  Score=154.67  Aligned_cols=172  Identities=15%  Similarity=0.157  Sum_probs=99.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|.+|||||||+++|++..|...+.+++...        +...+.+.                          
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~--------~~~~i~~~--------------------------   57 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--------YTAGLETE--------------------------   57 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee--------eEEEEEEC--------------------------
Confidence            45789999999999999999999988776544433110        00000000                          


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCc-hhHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANP-MTFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~-~~~~~~~~~~~  224 (324)
                                     .....+.||||||++++..      ....++  ..+|++++|.|...  ++.. ...|...+   
T Consensus        58 ---------------~~~v~l~iwDTaG~e~~~~------~~~~~~--~~ad~vIlVyDit~~~Sf~~~~~~w~~~i---  111 (232)
T cd04174          58 ---------------EQRVELSLWDTSGSPYYDN------VRPLCY--SDSDAVLLCFDISRPETVDSALKKWKAEI---  111 (232)
T ss_pred             ---------------CEEEEEEEEeCCCchhhHH------HHHHHc--CCCcEEEEEEECCChHHHHHHHHHHHHHH---
Confidence                           2256789999999877621      111122  34577777777654  3333 23454333   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccC-ceeeeccccCC-Ch
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSVGVSSVSGA-GI  301 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~iv~vSA~~g~-gv  301 (324)
                      ... ..+.|+|||+||+|+..... ..+......   ..  -..+.+..++++        . ++ .+++|||++|+ ||
T Consensus       112 ~~~-~~~~piilVgNK~DL~~~~~~~~~l~~~~~---~~--Vs~~e~~~~a~~--------~-~~~~~~EtSAktg~~~V  176 (232)
T cd04174         112 MDY-CPSTRILLIGCKTDLRTDLSTLMELSNQKQ---AP--ISYEQGCALAKQ--------L-GAEVYLECSAFTSEKSI  176 (232)
T ss_pred             HHh-CCCCCEEEEEECcccccccchhhhhccccC---Cc--CCHHHHHHHHHH--------c-CCCEEEEccCCcCCcCH
Confidence            222 24689999999999864211 000000000   00  000011222222        1 34 58999999998 89


Q ss_pred             HHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQE  314 (324)
Q Consensus       302 ~~l~~~i~~~~~~  314 (324)
                      +++|..++..+..
T Consensus       177 ~e~F~~~~~~~~~  189 (232)
T cd04174         177 HSIFRSASLLCLN  189 (232)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.81  E-value=2.1e-19  Score=147.13  Aligned_cols=115  Identities=23%  Similarity=0.320  Sum_probs=73.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.++.............+....+|++++|+|+....... .+   .   ..+...++|+++|+||+|+.
T Consensus        42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~---~---~~~~~~~~~~iiv~NK~Dl~  114 (158)
T cd01879          42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL-YL---T---LQLLELGLPVVVALNMIDEA  114 (158)
T ss_pred             CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH-HH---H---HHHHHcCCCEEEEEehhhhc
Confidence            35789999999987633222222222233324679999999987632211 11   1   23344689999999999997


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                      .........+.+   .                      . ..+.+++++||++|.|++++++.|...+
T Consensus       115 ~~~~~~~~~~~~---~----------------------~-~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         115 EKRGIKIDLDKL---S----------------------E-LLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ccccchhhHHHH---H----------------------H-hhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence            654322111111   1                      1 1146899999999999999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01866 Rab2 Rab2 subfamily

Probab=99.81  E-value=3e-19  Score=148.29  Aligned_cols=161  Identities=18%  Similarity=0.190  Sum_probs=96.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|++..+...+..++            +..+....                  +...    
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~------------~~~~~~~~------------------~~~~----   49 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI------------GVEFGARM------------------ITID----   49 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc------------ceeEEEEE------------------EEEC----
Confidence            3689999999999999999999876654322111            00000000                  0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||++++..      .....+  ..+|++++|+|....  +.....|   +..+..
T Consensus        50 --------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~il~v~d~~~~~s~~~~~~~---~~~~~~  104 (168)
T cd01866          50 --------------GKQIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLTSW---LEDARQ  104 (168)
T ss_pred             --------------CEEEEEEEEECCCcHHHHH------HHHHHh--ccCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence                          1134788999999766411      111122  346899999998642  1122222   222222


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......  .+....+..                     .  ...+++++||++|.|++++|.
T Consensus       105 ~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~i~~~~~  159 (168)
T cd01866         105 HSNSNMTIMLIGNKCDLESRREVS--YEEGEAFAK---------------------E--HGLIFMETSAKTASNVEEAFI  159 (168)
T ss_pred             hCCCCCcEEEEEECcccccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence            223578999999999997532110  011111110                     1  246799999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .+.+.+.
T Consensus       160 ~~~~~~~  166 (168)
T cd01866         160 NTAKEIY  166 (168)
T ss_pred             HHHHHHH
Confidence            9988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04109 Rab28 Rab28 subfamily

Probab=99.81  E-value=7.5e-20  Score=158.19  Aligned_cols=165  Identities=18%  Similarity=0.161  Sum_probs=97.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.+++.     +.  .+...+.+.                            
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~-----~d--~~~~~i~~~----------------------------   45 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIG-----LD--FFSKRVTLP----------------------------   45 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee-----EE--EEEEEEEeC----------------------------
Confidence            3799999999999999999998876544332220     00  000000000                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                      .            .....+.||||||+..+..      .....+  ..+|++++|+|....  +.....|...+......
T Consensus        46 ~------------~~~~~~~i~Dt~G~~~~~~------l~~~~~--~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~  105 (215)
T cd04109          46 G------------NLNVTLQVWDIGGQSIGGK------MLDKYI--YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKS  105 (215)
T ss_pred             C------------CCEEEEEEEECCCcHHHHH------HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccc
Confidence            0            1135788999999866521      111122  346899999997653  33333343333211100


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      .. .+.+++++||++|+||+++|+.
T Consensus       106 ~~~~~piilVgNK~DL~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109         106 SETQPLVVLVGNKTDLEHNRTVK--DDKHARFA----------------------QA-NGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             cCCCceEEEEEECcccccccccC--HHHHHHHH----------------------HH-cCCEEEEEECCCCCCHHHHHHH
Confidence            12346899999999997532110  01111111                      11 1367899999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+..
T Consensus       161 l~~~l~~  167 (215)
T cd04109         161 LAAELLG  167 (215)
T ss_pred             HHHHHHh
Confidence            9988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.81  E-value=1.2e-19  Score=149.41  Aligned_cols=160  Identities=14%  Similarity=0.181  Sum_probs=93.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.+++.       .. +..                       .....     
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-------~~-~~~-----------------------~~~~~-----   44 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-------DS-YRK-----------------------KVVLD-----   44 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-------hh-EEE-----------------------EEEEC-----
Confidence            4799999999999999999998776543221110       00 000                       00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+  ..++.+++++|....  +.....|...+.  ...
T Consensus        45 -------------~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~--~~~  101 (164)
T cd04139          45 -------------GEDVQLNILDTAGQEDYAA------IRDNYH--RSGEGFLLVFSITDMESFTATAEFREQIL--RVK  101 (164)
T ss_pred             -------------CEEEEEEEEECCChhhhhH------HHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence                         1245688999999876521      111122  234677777776432  222233322121  111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+......  .......+.+                     +  ...+++++||++|.|++++|..
T Consensus       102 ~~~~~piiiv~NK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~  156 (164)
T cd04139         102 DDDNVPLLLVGNKCDLEDKRQV--SSEEAANLAR---------------------Q--WGVPYVETSAKTRQNVEKAFYD  156 (164)
T ss_pred             CCCCCCEEEEEEcccccccccc--CHHHHHHHHH---------------------H--hCCeEEEeeCCCCCCHHHHHHH
Confidence            2357999999999999762111  0011111110                     1  1368999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |.+.+.
T Consensus       157 l~~~~~  162 (164)
T cd04139         157 LVREIR  162 (164)
T ss_pred             HHHHHH
Confidence            987664

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PTZ00369 Ras-like protein; Provisional

Probab=99.81  E-value=1.2e-19  Score=153.76  Aligned_cols=162  Identities=13%  Similarity=0.179  Sum_probs=96.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||++++++..+...+.+++       . ..+...                       +...    
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~-------~-~~~~~~-----------------------~~~~----   49 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI-------E-DSYRKQ-----------------------CVID----   49 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch-------h-hEEEEE-----------------------EEEC----
Confidence            4789999999999999999999887653322111       0 000000                       0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..      ....++  ..+|++++|+|..+..  .....|...+.  ..
T Consensus        50 --------------~~~~~l~i~Dt~G~~~~~~------l~~~~~--~~~d~iilv~D~s~~~s~~~~~~~~~~i~--~~  105 (189)
T PTZ00369         50 --------------EETCLLDILDTAGQEEYSA------MRDQYM--RTGQGFLCVYSITSRSSFEEIASFREQIL--RV  105 (189)
T ss_pred             --------------CEEEEEEEEeCCCCccchh------hHHHHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHH--Hh
Confidence                          1234678999999887621      111122  2357888888876532  22333322221  11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.+......  .....+.                      ... ..+++++||++|.||+++|.
T Consensus       106 ~~~~~~piiiv~nK~Dl~~~~~i~~--~~~~~~~----------------------~~~-~~~~~e~Sak~~~gi~~~~~  160 (189)
T PTZ00369        106 KDKDRVPMILVGNKCDLDSERQVST--GEGQELA----------------------KSF-GIPFLETSAKQRVNVDEAFY  160 (189)
T ss_pred             cCCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------HHh-CCEEEEeeCCCCCCHHHHHH
Confidence            2234789999999999865321110  0011000                      111 36899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.+..
T Consensus       161 ~l~~~l~~  168 (189)
T PTZ00369        161 ELVREIRK  168 (189)
T ss_pred             HHHHHHHH
Confidence            99987754

>cd04131 Rnd Rnd subfamily

Probab=99.81  E-value=2.9e-19  Score=149.92  Aligned_cols=169  Identities=13%  Similarity=0.140  Sum_probs=95.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||++++.+..+...+.+++..      .+  ...+.+.                            
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~------~~--~~~~~~~----------------------------   45 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFE------NY--TASFEID----------------------------   45 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEE------EE--EEEEEEC----------------------------
Confidence            57999999999999999999998876544433310      00  0000000                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCC--CCCCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP--RSANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~--~~~~~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||||++++..  .    ....+  ..+|++++|.|..  .++... ..|...+   ..
T Consensus        46 -------------~~~~~l~iwDt~G~~~~~~--~----~~~~~--~~a~~~ilvfdit~~~Sf~~~~~~w~~~i---~~  101 (178)
T cd04131          46 -------------EQRIELSLWDTSGSPYYDN--V----RPLCY--PDSDAVLICFDISRPETLDSVLKKWRGEI---QE  101 (178)
T ss_pred             -------------CEEEEEEEEECCCchhhhh--c----chhhc--CCCCEEEEEEECCChhhHHHHHHHHHHHH---HH
Confidence                         2246788999999876521  0    01111  2356777777764  344442 4454333   22


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-hHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v~~l~  305 (324)
                      . ..+.|+|+|+||+|+......   ...+.... ...-..+.+..++++        ....++++|||++|+| |+++|
T Consensus       102 ~-~~~~~iilVgnK~DL~~~~~~---~~~~~~~~-~~~v~~~e~~~~a~~--------~~~~~~~E~SA~~~~~~v~~~F  168 (178)
T cd04131         102 F-CPNTKVLLVGCKTDLRTDLST---LMELSHQR-QAPVSYEQGCAIAKQ--------LGAEIYLECSAFTSEKSVRDIF  168 (178)
T ss_pred             H-CCCCCEEEEEEChhhhcChhH---HHHHHhcC-CCCCCHHHHHHHHHH--------hCCCEEEECccCcCCcCHHHHH
Confidence            2 247899999999998642110   00000000 000000011222222        2223789999999995 99999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      ..+.+.
T Consensus       169 ~~~~~~  174 (178)
T cd04131         169 HVATMA  174 (178)
T ss_pred             HHHHHH
Confidence            999885

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.81  E-value=1.1e-19  Score=149.68  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=91.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|+|||||+++|++..+...+..++.     .   .+..    .                  .+..     .
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~-----~---~~~~----~------------------~~~~-----~   45 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG-----V---DFLE----K------------------QIFL-----R   45 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE-----E---EEEE----E------------------EEEE-----c
Confidence            3799999999999999999998766543222110     0   0000    0                  0000     0


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                 .......+.||||||++++..      .....+  ..+|.+++|+|..+  ++.....|...+   . .
T Consensus        46 -----------~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~~v~v~d~~~~~s~~~l~~~~~~~---~-~  102 (162)
T cd04106          46 -----------QSDEDVRLMLWDTAGQEEFDA------ITKAYY--RGAQACILVFSTTDRESFEAIESWKEKV---E-A  102 (162)
T ss_pred             -----------CCCCEEEEEEeeCCchHHHHH------hHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHH---H-H
Confidence                       001245789999999876521      112222  23567777777643  222223332222   1 1


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......  .++...+.                      .. .+.+++++||++|.|++++++.
T Consensus       103 ~~~~~p~iiv~nK~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106         103 ECGDIPMVLVQTKIDLLDQAVIT--NEEAEALA----------------------KR-LQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             hCCCCCEEEEEEChhcccccCCC--HHHHHHHH----------------------HH-cCCeEEEEECCCCCCHHHHHHH
Confidence            22479999999999997643211  01111111                      11 1358999999999999999999


Q ss_pred             HHH
Q 020549          308 VEE  310 (324)
Q Consensus       308 i~~  310 (324)
                      |..
T Consensus       158 l~~  160 (162)
T cd04106         158 LAE  160 (162)
T ss_pred             HHH
Confidence            875

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04158 ARD1 ARD1 subfamily

Probab=99.81  E-value=1.5e-19  Score=150.41  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ...+.+|||||+.++.  .    .....+  ..+|+++||+|.+..  +.....|...+  +......+.|+++|+||+|
T Consensus        42 ~~~i~l~Dt~G~~~~~--~----~~~~~~--~~ad~ii~V~D~s~~~s~~~~~~~~~~~--~~~~~~~~~piilv~NK~D  111 (169)
T cd04158          42 NLKFTIWDVGGKHKLR--P----LWKHYY--LNTQAVVFVVDSSHRDRVSEAHSELAKL--LTEKELRDALLLIFANKQD  111 (169)
T ss_pred             CEEEEEEECCCChhcc--h----HHHHHh--ccCCEEEEEEeCCcHHHHHHHHHHHHHH--hcChhhCCCCEEEEEeCcC
Confidence            5678999999987651  1    111122  236899999998653  22222221111  1111123589999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHHHHHHHHHHHHHh
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMET  318 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~~  318 (324)
                      +.......+..+... +.                      ..  .....++++||++|.||+++|+.|.+.+.+..+.
T Consensus       112 l~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~  166 (169)
T cd04158         112 VAGALSVEEMTELLS-LH----------------------KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL  166 (169)
T ss_pred             cccCCCHHHHHHHhC-Cc----------------------cccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence            864311111111000 00                      00  0123688999999999999999999888776543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01893 Miro1 Miro1 subfamily

Probab=99.81  E-value=6.4e-19  Score=146.03  Aligned_cols=159  Identities=17%  Similarity=0.230  Sum_probs=94.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|.+|||||||+++|.+..+......+       ........                        ..        
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-------~~~~~~~~------------------------~~--------   42 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-------LPEITIPA------------------------DV--------   42 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccCCCc-------ccceEeee------------------------ee--------
Confidence            7999999999999999999988765321100       00000000                        00        


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch---hHHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM---TFMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~---~~~~~~~~~~~~~  227 (324)
                                 .....++.||||||+.++..      .....+  ..+|++++|+|......-.   ..|...+   ...
T Consensus        43 -----------~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~~i---~~~  100 (166)
T cd01893          43 -----------TPERVPTTIVDTSSRPQDRA------NLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLI---RRL  100 (166)
T ss_pred             -----------cCCeEEEEEEeCCCchhhhH------HHhhhc--ccCCEEEEEEECCCHHHHHHHHHHHHHHH---HHh
Confidence                       02356789999999866421      112222  3468889999876532211   1343222   222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                       ..+.|+++|+||+|+.+........+....+..                     .+....+++++||++|.|++++|..
T Consensus       101 -~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893         101 -GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN---------------------EFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             -CCCCCEEEEEEchhcccccchhHHHHHHHHHHH---------------------HHhcccEEEEeccccccCHHHHHHH
Confidence             247999999999999765422111111111110                     1222247999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      +.+.+
T Consensus       159 ~~~~~  163 (166)
T cd01893         159 AQKAV  163 (166)
T ss_pred             HHHHh
Confidence            98765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.81  E-value=3.7e-20  Score=145.64  Aligned_cols=167  Identities=16%  Similarity=0.185  Sum_probs=111.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|.|||.+|+|||||+.++....|......+| +.|.-+..                                    
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI-GvDFkvk~------------------------------------   52 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI-GVDFKVKV------------------------------------   52 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCcee-eeeEEEEE------------------------------------
Confidence            45899999999999999999999988875432222 11111100                                    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                 +...+...++-||||+||++|..      ....+++.+..-++||.|..++.+...+.|..++..  +.
T Consensus        53 -----------m~vdg~~~KlaiWDTAGqErFRt------LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~--Ys  113 (209)
T KOG0080|consen   53 -----------MQVDGKRLKLAIWDTAGQERFRT------LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL--YS  113 (209)
T ss_pred             -----------EEEcCceEEEEEEeccchHhhhc------cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHh--hc
Confidence                       00014467889999999999822      112233444455889999999999888888766642  22


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++-.++|+||+|..+...+    ..-            .+..+++++         .+-++++|||+.+||...|+.
T Consensus       114 tn~diikmlVgNKiDkes~R~V----~re------------EG~kfAr~h---------~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen  114 TNPDIIKMLVGNKIDKESERVV----DRE------------EGLKFARKH---------RCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             CCccHhHhhhcccccchhcccc----cHH------------HHHHHHHhh---------CcEEEEcchhhhccHHHHHHH
Confidence            3456777899999997643211    111            122333333         245788999999999999999


Q ss_pred             HHHHHHHH
Q 020549          308 VEESAQEF  315 (324)
Q Consensus       308 i~~~~~~~  315 (324)
                      +++.+.+-
T Consensus       169 lveKIi~t  176 (209)
T KOG0080|consen  169 LVEKIIET  176 (209)
T ss_pred             HHHHHhcC
Confidence            99988653

>cd01895 EngA2 EngA2 subfamily

Probab=99.81  E-value=9.6e-19  Score=145.00  Aligned_cols=167  Identities=21%  Similarity=0.333  Sum_probs=98.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +.+|+++|.+|+|||||+++|++.....            ....+.++    +...              .....     
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~----~~~~--------------~~~~~-----   46 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVI------------VSDIAGTT----RDSI--------------DVPFE-----   46 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccee------------ccCCCCCc----cCce--------------eeEEE-----
Confidence            4679999999999999999998864321            11111111    0000              00000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHH--HHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA--IITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~--~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                    ..+..+.+|||||+.+.........  ...+.+ ....+|++++|+|+.........     ..+.
T Consensus        47 --------------~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~  107 (174)
T cd01895          47 --------------YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-----RIAG  107 (174)
T ss_pred             --------------ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-----HHHH
Confidence                          1245688999999865421111100  111111 11346999999999876554331     1123


Q ss_pred             HHhhcCCCeEEEeeccccCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      .+...+.|+++|+||+|+....  ....+...+.   +.+                   ......+++++||++|.|+++
T Consensus       108 ~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~Sa~~~~~i~~  165 (174)
T cd01895         108 LILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIR---RKL-------------------PFLDYAPIVFISALTGQGVDK  165 (174)
T ss_pred             HHHhcCCCEEEEEeccccCCccHHHHHHHHHHHH---hhc-------------------ccccCCceEEEeccCCCCHHH
Confidence            3444679999999999998652  2222222211   100                   112357899999999999999


Q ss_pred             HHHHHHHH
Q 020549          304 YFKAVEES  311 (324)
Q Consensus       304 l~~~i~~~  311 (324)
                      +++.+.+.
T Consensus       166 ~~~~l~~~  173 (174)
T cd01895         166 LFDAIDEV  173 (174)
T ss_pred             HHHHHHHh
Confidence            99998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01890 LepA LepA subfamily

Probab=99.81  E-value=4.6e-19  Score=148.49  Aligned_cols=112  Identities=21%  Similarity=0.290  Sum_probs=70.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||++++..      .....++  .+|++++|+|+..+.......     .+..+...++|+++|+||+|+.
T Consensus        66 ~~~~~l~Dt~G~~~~~~------~~~~~~~--~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~  132 (179)
T cd01890          66 EYLLNLIDTPGHVDFSY------EVSRSLA--ACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP  132 (179)
T ss_pred             cEEEEEEECCCChhhHH------HHHHHHH--hcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence            56788999999987622      2222222  368999999998765433311     1122334679999999999986


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      .... ....+.+.   +              .+     . .+..+++++||++|.|+++|++.|.+.++
T Consensus       133 ~~~~-~~~~~~~~---~--------------~~-----~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         133 SADP-ERVKQQIE---D--------------VL-----G-LDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             cCCH-HHHHHHHH---H--------------Hh-----C-CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            5321 11111111   1              00     0 11235899999999999999999987753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04154 Arl2 Arl2 subfamily

Probab=99.81  E-value=2.5e-19  Score=149.54  Aligned_cols=159  Identities=17%  Similarity=0.208  Sum_probs=92.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+++|.+..+.. ..       +++.       +....                  +.    
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-~~-------~t~g-------~~~~~------------------~~----   54 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDIDT-IS-------PTLG-------FQIKT------------------LE----   54 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cC-------Cccc-------cceEE------------------EE----
Confidence            345789999999999999999998763321 00       0000       00000                  00    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.+|||||+..+.  .    .....+  ..+|++++|+|+....  .....|..  ..+
T Consensus        55 ----------------~~~~~l~l~D~~G~~~~~--~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~--~~~  108 (173)
T cd04154          55 ----------------YEGYKLNIWDVGGQKTLR--P----YWRNYF--ESTDALIWVVDSSDRLRLDDCKRELK--ELL  108 (173)
T ss_pred             ----------------ECCEEEEEEECCCCHHHH--H----HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHH--HHH
Confidence                            124578999999987641  1    111222  2468999999987642  11112211  111


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......+.|+++|+||+|+.......+..+.+. +..                     ......+++++||++|.|++++
T Consensus       109 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~---------------------~~~~~~~~~~~Sa~~g~gi~~l  166 (173)
T cd04154         109 QEERLAGATLLILANKQDLPGALSEEEIREALE-LDK---------------------ISSHHWRIQPCSAVTGEGLLQG  166 (173)
T ss_pred             hChhhcCCCEEEEEECcccccCCCHHHHHHHhC-ccc---------------------cCCCceEEEeccCCCCcCHHHH
Confidence            112235799999999999975421111111110 000                     0012468999999999999999


Q ss_pred             HHHHHH
Q 020549          305 FKAVEE  310 (324)
Q Consensus       305 ~~~i~~  310 (324)
                      |+.|..
T Consensus       167 ~~~l~~  172 (173)
T cd04154         167 IDWLVD  172 (173)
T ss_pred             HHHHhc
Confidence            998863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01894 EngA1 EngA1 subfamily

Probab=99.81  E-value=2.7e-19  Score=146.14  Aligned_cols=111  Identities=23%  Similarity=0.271  Sum_probs=72.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +..+.||||||+.++..  .....+.+...  ...+|++++|+|+.........+     ....+...+.|+++|+||+|
T Consensus        44 ~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~piiiv~nK~D  116 (157)
T cd01894          44 GREFILIDTGGIEPDDE--GISKEIREQAELAIEEADVILFVVDGREGLTPADEE-----IAKYLRKSKKPVILVVNKVD  116 (157)
T ss_pred             CeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-----HHHHHHhcCCCEEEEEECcc
Confidence            46789999999877521  12222222111  13468999999998765544322     12334456799999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      +......   .....                         . ....+++++||++|.|++++++.|.+.
T Consensus       117 ~~~~~~~---~~~~~-------------------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         117 NIKEEDE---AAEFY-------------------------S-LGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             cCChHHH---HHHHH-------------------------h-cCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            9875432   11110                         1 122378999999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=4.5e-19  Score=169.17  Aligned_cols=172  Identities=19%  Similarity=0.320  Sum_probs=107.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|++|+|||||+|+|++.....            +...++++    ++.+               .....  
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~------------~~~~~gtt----~~~~---------------~~~~~--  217 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVI------------VSDIAGTT----RDSI---------------DTPFE--  217 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCce----EEEE---------------EEEEE--
Confidence            356899999999999999999999864321            22222222    1100               00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHH-HHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGA-IITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~-~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                      ..+..+.||||||+.+...... ... ...+.+.. ..+|++++|+|+..+...++.     ..
T Consensus       218 ----------------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-----~i  276 (435)
T PRK00093        218 ----------------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-----RI  276 (435)
T ss_pred             ----------------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-----HH
Confidence                            1255789999999865421111 110 11111211 347999999999988766552     22


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +..+...++|+|+|+||+|+.+.+...+..+.+..   .+                   .+..+.+++++||++|.|+++
T Consensus       277 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~---~l-------------------~~~~~~~i~~~SA~~~~gv~~  334 (435)
T PRK00093        277 AGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRR---RL-------------------PFLDYAPIVFISALTGQGVDK  334 (435)
T ss_pred             HHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHH---hc-------------------ccccCCCEEEEeCCCCCCHHH
Confidence            23445568999999999999865433322222221   10                   223568999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          304 YFKAVEESAQE  314 (324)
Q Consensus       304 l~~~i~~~~~~  314 (324)
                      +++.+.+....
T Consensus       335 l~~~i~~~~~~  345 (435)
T PRK00093        335 LLEAIDEAYEN  345 (435)
T ss_pred             HHHHHHHHHHH
Confidence            99999886653

>cd04128 Spg1 Spg1p

Probab=99.81  E-value=1.4e-19  Score=152.30  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=95.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++|++..+...+.+++-     . ++ +...+.+.                            
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g-----~-~~-~~~~i~~~----------------------------   45 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG-----V-NF-MEKTISIR----------------------------   45 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-----e-EE-EEEEEEEC----------------------------
Confidence            3799999999999999999998877643322210     0 00 00000000                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||+|+.++..       +... .-..+|++++|+|..+..  .....|...   +...
T Consensus        46 -------------~~~~~l~iwDt~G~~~~~~-------~~~~-~~~~a~~iilv~D~t~~~s~~~i~~~~~~---~~~~  101 (182)
T cd04128          46 -------------GTEITFSIWDLGGQREFIN-------MLPL-VCNDAVAILFMFDLTRKSTLNSIKEWYRQ---ARGF  101 (182)
T ss_pred             -------------CEEEEEEEEeCCCchhHHH-------hhHH-HCcCCCEEEEEEECcCHHHHHHHHHHHHH---HHHh
Confidence                         1245789999999877521       1111 113468999999976532  222234322   2222


Q ss_pred             hhcCCCeEEEeeccccCChH---hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHE---FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .....| |+|+||+|+....   ......+....+.                      ... +.+++++||++|.|++++
T Consensus       102 ~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a----------------------~~~-~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128         102 NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA----------------------KAM-KAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH----------------------HHc-CCEEEEEeCCCCCCHHHH
Confidence            234466 7899999996321   1001111111111                      111 368999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      |..|.+.+.+
T Consensus       158 f~~l~~~l~~  167 (182)
T cd04128         158 FKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.81  E-value=1.7e-19  Score=156.22  Aligned_cols=161  Identities=20%  Similarity=0.273  Sum_probs=97.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|.+|||||||+++++...+...+.+++     +.......  +                       ...  
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~ti-----g~~~~~~~--~-----------------------~~~--   58 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----GVEVHPLD--F-----------------------FTN--   58 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcc-----ceeEEEEE--E-----------------------EEC--
Confidence            456899999999999999999998877654332221     00000000  0                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..      ....++  ..++++|+|+|....  +.....|...+   
T Consensus        59 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilvfD~~~~~s~~~i~~w~~~i---  111 (219)
T PLN03071         59 ----------------CGKIRFYCWDTAGQEKFGG------LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDL---  111 (219)
T ss_pred             ----------------CeEEEEEEEECCCchhhhh------hhHHHc--ccccEEEEEEeCCCHHHHHHHHHHHHHH---
Confidence                            1245788999999877621      111122  234677777776543  33333443333   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ... ..++|+++|+||+|+.......+.   . .+.                      . ....+++++||++|.||+++
T Consensus       112 ~~~-~~~~piilvgNK~Dl~~~~v~~~~---~-~~~----------------------~-~~~~~~~e~SAk~~~~i~~~  163 (219)
T PLN03071        112 CRV-CENIPIVLCGNKVDVKNRQVKAKQ---V-TFH----------------------R-KKNLQYYEISAKSNYNFEKP  163 (219)
T ss_pred             HHh-CCCCcEEEEEEchhhhhccCCHHH---H-HHH----------------------H-hcCCEEEEcCCCCCCCHHHH
Confidence            222 357999999999998643211100   1 010                      0 12467899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      |..|.+.+..
T Consensus       164 f~~l~~~~~~  173 (219)
T PLN03071        164 FLYLARKLAG  173 (219)
T ss_pred             HHHHHHHHHc
Confidence            9999988754

>cd04113 Rab4 Rab4 subfamily

Probab=99.81  E-value=3.5e-19  Score=146.57  Aligned_cols=158  Identities=19%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+......++.     .........+  .                            
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~-----~~~~~~~~~~--~----------------------------   45 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG-----VEFGSKIIRV--G----------------------------   45 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----eeEEEEEEEE--C----------------------------
Confidence            3799999999999999999998876543221110     0000000000  0                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+  ..+|.+++|+|..+...  ....|   +..+..+
T Consensus        46 -------------~~~~~l~l~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~  101 (161)
T cd04113          46 -------------GKRVKLQIWDTAGQERFRS------VTRSYY--RGAAGALLVYDITNRTSFEALPTW---LSDARAL  101 (161)
T ss_pred             -------------CEEEEEEEEECcchHHHHH------hHHHHh--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence                         1135788999999866521      111112  34689999999866332  22233   2222334


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+......  ..+....+..                     .  .+.+++++||++|.|++++|+.
T Consensus       102 ~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~~~~~  156 (161)
T cd04113         102 ASPNIVVILVGNKSDLADQREV--TFLEASRFAQ---------------------E--NGLLFLETSALTGENVEEAFLK  156 (161)
T ss_pred             CCCCCeEEEEEEchhcchhccC--CHHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHHHHH
Confidence            4568999999999999753211  0011111111                     1  2378999999999999999999


Q ss_pred             HHHH
Q 020549          308 VEES  311 (324)
Q Consensus       308 i~~~  311 (324)
                      +.+.
T Consensus       157 ~~~~  160 (161)
T cd04113         157 CARS  160 (161)
T ss_pred             HHHh
Confidence            9864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04127 Rab27A Rab27a subfamily

Probab=99.81  E-value=2.3e-19  Score=150.44  Aligned_cols=171  Identities=17%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|.+..+...+.+++. .+.......+..    ..              ++....      
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~----~~--------------~~~~~~------   58 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVG-IDFREKRVVYNS----SG--------------PGGTLG------   58 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc-eEEEEEEEEEcC----cc--------------cccccc------
Confidence            47899999999999999999998877554322210 000000000000    00              000000      


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                   ......+.||||||+.++..      .....+  ..+|++++|+|..+.  +.....|...+   ..
T Consensus        59 -------------~~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i---~~  114 (180)
T cd04127          59 -------------RGQRIHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQL---QT  114 (180)
T ss_pred             -------------CCCEEEEEEEeCCChHHHHH------HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHH---HH
Confidence                         01245788999999876521      111122  346888999987642  22222332222   11


Q ss_pred             H-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          227 L-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      . ...+.|+++|+||+|+.+.....  .+....+.+                     .  ...+++++||++|.|++++|
T Consensus       115 ~~~~~~~piiiv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~~~~v~~l~  169 (180)
T cd04127         115 HAYCENPDIVLCGNKADLEDQRQVS--EEQAKALAD---------------------K--YGIPYFETSAATGTNVEKAV  169 (180)
T ss_pred             hcCCCCCcEEEEEeCccchhcCccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHH
Confidence            1 12468999999999997542210  011111111                     1  13689999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      +.|.+.+.
T Consensus       170 ~~l~~~~~  177 (180)
T cd04127         170 ERLLDLVM  177 (180)
T ss_pred             HHHHHHHH
Confidence            99988664

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3.4e-19  Score=138.55  Aligned_cols=163  Identities=17%  Similarity=0.193  Sum_probs=112.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .-++|+++|..|+|||.|++++....|+.+...++     ++.-.-.+..                              
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgati-----gvdfmiktve------------------------------   50 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI-----GVDFMIKTVE------------------------------   50 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee-----eeeEEEEEEE------------------------------
Confidence            45789999999999999999999999998755444     2211111110                              


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   ..+..++++||||+||++|.      .+...+.+++.+-+++|.|....++.-...|..++   ..+
T Consensus        51 -------------v~gekiklqiwdtagqerfr------sitqsyyrsahalilvydiscqpsfdclpewlrei---e~y  108 (213)
T KOG0095|consen   51 -------------VNGEKIKLQIWDTAGQERFR------SITQSYYRSAHALILVYDISCQPSFDCLPEWLREI---EQY  108 (213)
T ss_pred             -------------ECCeEEEEEEeeccchHHHH------HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHH---HHH
Confidence                         01446789999999999982      23344556666667778787777887776775544   445


Q ss_pred             hhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      .....--|+|+||+|+.+..++ +..-+++.                 +.         ..+-++++||+..+||+.||.
T Consensus       109 an~kvlkilvgnk~d~~drrevp~qigeefs-----------------~~---------qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen  109 ANNKVLKILVGNKIDLADRREVPQQIGEEFS-----------------EA---------QDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             hhcceEEEeeccccchhhhhhhhHHHHHHHH-----------------Hh---------hhhhhhhhcccchhhHHHHHH
Confidence            5556667999999999876433 22222222                 11         123467799999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .+.-.+.
T Consensus       163 ~~a~rli  169 (213)
T KOG0095|consen  163 DLACRLI  169 (213)
T ss_pred             HHHHHHH
Confidence            9876654

>cd01868 Rab11_like Rab11-like

Probab=99.80  E-value=1.7e-19  Score=149.03  Aligned_cols=159  Identities=19%  Similarity=0.270  Sum_probs=94.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+.....+++     +.   .+..    .                  .+...     
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-----~~---~~~~----~------------------~~~~~-----   48 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI-----GV---EFAT----R------------------SIQID-----   48 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-----ce---EEEE----E------------------EEEEC-----
Confidence            689999999999999999999886653322111     00   0000    0                  00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+.++..      .....+  ..++.+++|+|..+..  .....|   +..+...
T Consensus        49 -------------~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~  104 (165)
T cd01868          49 -------------GKTIKAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKKQTFENVERW---LKELRDH  104 (165)
T ss_pred             -------------CEEEEEEEEeCCChHHHHH------HHHHHH--CCCCEEEEEEECcCHHHHHHHHHH---HHHHHHh
Confidence                         1134688999999876411      111122  2357888999986422  112223   2222222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+......  ..+....+.                      . ....+++++||++|.|++++++.
T Consensus       105 ~~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~l~~~  159 (165)
T cd01868         105 ADSNIVIMLVGNKSDLRHLRAV--PTEEAKAFA----------------------E-KNGLSFIETSALDGTNVEEAFKQ  159 (165)
T ss_pred             CCCCCeEEEEEECccccccccC--CHHHHHHHH----------------------H-HcCCEEEEEECCCCCCHHHHHHH
Confidence            3346899999999998754211  011111111                      1 12468999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |...+
T Consensus       160 l~~~i  164 (165)
T cd01868         160 LLTEI  164 (165)
T ss_pred             HHHHh
Confidence            98764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.80  E-value=1.2e-18  Score=146.38  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=94.8

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...+..+|+|+|++|+|||||+|+|++..+...           +...+.++ .++.                    .  
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~-----------~~~~~~~t-~~~~--------------------~--   59 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLAR-----------TSKTPGRT-QLIN--------------------F--   59 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc-----------ccCCCCcc-eEEE--------------------E--
Confidence            346778899999999999999999998743210           11111111 0000                    0  


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHh
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSN  219 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~  219 (324)
                         +              ..+..+.||||||+.....    +......+..+++. ..++.+++|+|+..++......  
T Consensus        60 ---~--------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--  120 (179)
T TIGR03598        60 ---F--------------EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--  120 (179)
T ss_pred             ---E--------------EeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--
Confidence               0              0023689999999754211    11111122233333 2358999999998766554421  


Q ss_pred             HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                         .+..+...++|+++|+||+|+..........+.++...+                     ......+++++||++|+
T Consensus       121 ---~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~---------------------~~~~~~~v~~~Sa~~g~  176 (179)
T TIGR03598       121 ---MLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALK---------------------KDADDPSVQLFSSLKKT  176 (179)
T ss_pred             ---HHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHh---------------------hccCCCceEEEECCCCC
Confidence               123445568999999999999876543333333321111                     11223589999999999


Q ss_pred             ChH
Q 020549          300 GIE  302 (324)
Q Consensus       300 gv~  302 (324)
                      |++
T Consensus       177 gi~  179 (179)
T TIGR03598       177 GID  179 (179)
T ss_pred             CCC
Confidence            984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.80  E-value=5e-19  Score=145.76  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=65.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-HHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ...+.||||||+.++..      ....++  ..+|+++||+|..+... ...+...+..+ ......+.|+++|+||+|+
T Consensus        43 ~~~~~l~D~~G~~~~~~------~~~~~~--~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  113 (159)
T cd04150          43 NISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRER-IGEAREELQRMLNEDELRDAVLLVFANKQDL  113 (159)
T ss_pred             CEEEEEEECCCCHhHHH------HHHHHh--cCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence            56789999999876521      111122  34689999999865321 11111111111 1111135899999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      .......+..+.+. +                  .    .. .....++++||++|.||+++|+.|.+
T Consensus       114 ~~~~~~~~i~~~~~-~------------------~----~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         114 PNAMSAAEVTDKLG-L------------------H----SLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCHHHHHHHhC-c------------------c----ccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            65321111111110 0                  0    00 11245789999999999999998864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04151 Arl1 Arl1 subfamily

Probab=99.80  E-value=3.9e-19  Score=146.03  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH-HHHHHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ...+.||||||+.++.  .    .....+  ..+|++++|+|+........ ....+ ..+......+.|+++|+||+|+
T Consensus        42 ~~~~~i~Dt~G~~~~~--~----~~~~~~--~~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~Dl  112 (158)
T cd04151          42 NLKFQVWDLGGQTSIR--P----YWRCYY--SNTDAIIYVVDSTDRDRLGT-AKEELHAMLEEEELKGAVLLVFANKQDM  112 (158)
T ss_pred             CEEEEEEECCCCHHHH--H----HHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence            5678999999987651  1    111112  34799999999875321111 11111 1111112247899999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      .......+....+.                     ..  .+ ....+++++||++|.|++++|+.|++
T Consensus       113 ~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         113 PGALSEAEISEKLG---------------------LS--ELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCCHHHHHHHhC---------------------cc--ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            75421111111110                     00  00 11247999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04177 RSR1 RSR1 subgroup

Probab=99.80  E-value=2.3e-19  Score=148.99  Aligned_cols=160  Identities=16%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.+|||||||+++|.+..+.....+++       .. .+...                       +...     
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~-------~~-~~~~~-----------------------~~~~-----   45 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI-------ED-SYRKQ-----------------------VEID-----   45 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc-------hh-eEEEE-----------------------EEEC-----
Confidence            479999999999999999999876643221111       00 00000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+.++..      .....+.  .++.+++|+|...  .+.....|...+.  ...
T Consensus        46 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~vlv~~~~~~~s~~~~~~~~~~i~--~~~  102 (168)
T cd04177          46 -------------GRQCDLEILDTAGTEQFTA------MRELYIK--SGQGFLLVYSVTSEASLNELGELREQVL--RIK  102 (168)
T ss_pred             -------------CEEEEEEEEeCCCcccchh------hhHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHH--Hhh
Confidence                         1235778999999887621      1111222  2466677776654  3333333332221  122


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      ..+...+++++||++|.|++++|..
T Consensus       103 ~~~~~piiiv~nK~D~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~SA~~~~~i~~~f~~  158 (168)
T cd04177         103 DSDNVPMVLVGNKADLEDDRQVS--REDGVSLS----------------------QQWGNVPFYETSARKRTNVDEVFID  158 (168)
T ss_pred             CCCCCCEEEEEEChhccccCccC--HHHHHHHH----------------------HHcCCceEEEeeCCCCCCHHHHHHH
Confidence            34579999999999987543210  00111110                      1123368999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |...+
T Consensus       159 i~~~~  163 (168)
T cd04177         159 LVRQI  163 (168)
T ss_pred             HHHHH
Confidence            98754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.80  E-value=7.2e-19  Score=141.75  Aligned_cols=103  Identities=19%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             EEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh-HHHhHHHHHHHHhhcCCCeEEEeeccccCChH
Q 020549          169 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT-FMSNMLYACSILYKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       169 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~  247 (324)
                      .+|||||+...  .......+...  -..+|++++|+|+.+...... .|   .   ..   ...|+++|+||+|+.+..
T Consensus        38 ~~iDt~G~~~~--~~~~~~~~~~~--~~~ad~vilv~d~~~~~s~~~~~~---~---~~---~~~p~ilv~NK~Dl~~~~  104 (142)
T TIGR02528        38 GAIDTPGEYVE--NRRLYSALIVT--AADADVIALVQSATDPESRFPPGF---A---SI---FVKPVIGLVTKIDLAEAD  104 (142)
T ss_pred             eeecCchhhhh--hHHHHHHHHHH--hhcCCEEEEEecCCCCCcCCChhH---H---Hh---ccCCeEEEEEeeccCCcc
Confidence            58999997311  11111112121  235799999999876654322 22   1   11   235999999999997532


Q ss_pred             hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          248 FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       248 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...+   ....+.                      +.....+++++||++|.|++++|+.|.
T Consensus       105 ~~~~---~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       105 VDIE---RAKELL----------------------ETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             cCHH---HHHHHH----------------------HHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            1111   111111                      111234799999999999999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04157 Arl6 Arl6 subfamily

Probab=99.80  E-value=2.3e-19  Score=147.62  Aligned_cols=115  Identities=15%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc--hhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--MTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ...+.+|||||+.++..      .....+  ..+|+++||+|++.....  ...|...+.....+...++|+++|+||+|
T Consensus        44 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D  115 (162)
T cd04157          44 NLSFTAFDMSGQGKYRG------LWEHYY--KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD  115 (162)
T ss_pred             CEEEEEEECCCCHhhHH------HHHHHH--ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence            56789999999876521      111122  346999999998764321  11121111000011234799999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      +.......+....+. +.                      . .....+++++||++|.|++++|+.|.+
T Consensus       116 l~~~~~~~~~~~~l~-~~----------------------~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         116 LPDALTAVKITQLLG-LE----------------------NIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             ccCCCCHHHHHHHhC-Cc----------------------cccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            975422111111100 00                      0 011246899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04126 Rab20 Rab20 subfamily

Probab=99.80  E-value=4.5e-19  Score=153.21  Aligned_cols=184  Identities=11%  Similarity=0.072  Sum_probs=97.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++|++..+.. ..+++       .                             +....     
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Ti-------g-----------------------------~~~~~-----   38 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTV-------G-----------------------------GAFYL-----   38 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCcc-------c-----------------------------eEEEE-----
Confidence            379999999999999999999887642 11110       0                             00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                      ..           .....+.||||||++++..   ..   ..++  ..+|++|+|+|..+.  +.....|..   .+...
T Consensus        39 ~~-----------~~~~~l~iwDt~G~e~~~~---l~---~~~~--~~ad~~IlV~Dvt~~~Sf~~l~~~~~---~l~~~   96 (220)
T cd04126          39 KQ-----------WGPYNISIWDTAGREQFHG---LG---SMYC--RGAAAVILTYDVSNVQSLEELEDRFL---GLTDT   96 (220)
T ss_pred             EE-----------eeEEEEEEEeCCCcccchh---hH---HHHh--ccCCEEEEEEECCCHHHHHHHHHHHH---HHHHh
Confidence            00           1245788999999877521   11   1112  346888999887653  333322211   11122


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHH-HHHH--hcCccchhhHHHHHHH---hHHHH--hccCceeeeccccCC
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVF-QAAI--SSDHSYTSTLTNSLSL---ALDEF--YKNLKSVGVSSVSGA  299 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l-~~~~--~~~~~~~~~l~~~~~~---~~~~~--~~~~~iv~vSA~~g~  299 (324)
                      ...++|+|+|+||+|+................ ....  .-..+.+..++++.+.   +.+..  ....++++|||++|.
T Consensus        97 ~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~  176 (220)
T cd04126          97 ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY  176 (220)
T ss_pred             cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCC
Confidence            23568999999999997521000000000000 0000  0000001122222110   00000  112679999999999


Q ss_pred             ChHHHHHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQEFME  317 (324)
Q Consensus       300 gv~~l~~~i~~~~~~~~~  317 (324)
                      ||+++|..+++.+.....
T Consensus       177 ~V~elf~~i~~~~~~~~~  194 (220)
T cd04126         177 NVDELFEYLFNLVLPLIL  194 (220)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999988765443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01862 Rab7 Rab7 subfamily

Probab=99.80  E-value=5.2e-19  Score=146.94  Aligned_cols=164  Identities=16%  Similarity=0.212  Sum_probs=95.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+......++.     .. + ....+                       ...     
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~-----~~-~-~~~~~-----------------------~~~-----   45 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG-----AD-F-LTKEV-----------------------TVD-----   45 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc-----eE-E-EEEEE-----------------------EEC-----
Confidence            3799999999999999999998865433221110     00 0 00000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+..+..      .....+  ..+|++++++|......  ....|...+  ...+
T Consensus        46 -------------~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~  102 (172)
T cd01862          46 -------------DKLVTLQIWDTAGQERFQS------LGVAFY--RGADCCVLVYDVTNPKSFESLDSWRDEF--LIQA  102 (172)
T ss_pred             -------------CEEEEEEEEeCCChHHHHh------HHHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHH--HHhc
Confidence                         1234678999999765421      111122  33689999998865431  112232211  1111


Q ss_pred             h---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 ~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .   ..++|+++|+||+|+..+...  ..+....+.                      ......+++++||++|.|++++
T Consensus       103 ~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862         103 SPSDPENFPFVVLGNKIDLEEKRQV--STKKAQQWC----------------------QSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             CccCCCCceEEEEEECccccccccc--CHHHHHHHH----------------------HHcCCceEEEEECCCCCCHHHH
Confidence            1   237899999999999842211  001111111                      1122468999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      ++.|.+.+.+.
T Consensus       159 ~~~i~~~~~~~  169 (172)
T cd01862         159 FETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHhc
Confidence            99999877654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=4.1e-19  Score=165.60  Aligned_cols=176  Identities=22%  Similarity=0.297  Sum_probs=120.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+++.|+++|+...|||||+..+.+.....+....+.++            +                    |.+.... 
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQh------------I--------------------GA~~v~~-   49 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQH------------I--------------------GAYQVPL-   49 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeE------------e--------------------eeEEEEe-
Confidence            367889999999999999999998876554322222111            0                    0011110 


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                        +.            .....+.|+||||++-|..-++.+.        ..+|++++|||+.+++.+++     .+.++.
T Consensus        50 --~~------------~~~~~itFiDTPGHeAFt~mRaRGa--------~vtDIaILVVa~dDGv~pQT-----iEAI~h  102 (509)
T COG0532          50 --DV------------IKIPGITFIDTPGHEAFTAMRARGA--------SVTDIAILVVAADDGVMPQT-----IEAINH  102 (509)
T ss_pred             --cc------------CCCceEEEEcCCcHHHHHHHHhcCC--------ccccEEEEEEEccCCcchhH-----HHHHHH
Confidence              00            0246899999999766522111111        45799999999999999988     555677


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ++..+.|+|+++||+|+.+..-.. ...++                  .+.+...+.|.....++|+||++|+|+++|+.
T Consensus       103 ak~a~vP~iVAiNKiDk~~~np~~-v~~el------------------~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~  163 (509)
T COG0532         103 AKAAGVPIVVAINKIDKPEANPDK-VKQEL------------------QEYGLVPEEWGGDVIFVPVSAKTGEGIDELLE  163 (509)
T ss_pred             HHHCCCCEEEEEecccCCCCCHHH-HHHHH------------------HHcCCCHhhcCCceEEEEeeccCCCCHHHHHH
Confidence            888999999999999998643111 11111                  12244455777788999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 020549          307 AVEESAQEFMETYKY  321 (324)
Q Consensus       307 ~i~~~~~~~~~~~~~  321 (324)
                      .|.-...-...++.+
T Consensus       164 ~ill~aev~elka~~  178 (509)
T COG0532         164 LILLLAEVLELKANP  178 (509)
T ss_pred             HHHHHHHHHhhhcCC
Confidence            998877666555443

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.80  E-value=3.5e-19  Score=169.46  Aligned_cols=157  Identities=20%  Similarity=0.238  Sum_probs=100.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +.+++|+++|++|||||||+|+|++.....            +...++++    ++...              ..+.   
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~--------------~~i~---  259 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAI------------VTDIAGTT----RDVIE--------------EHIN---  259 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcc----cccEE--------------EEEE---
Confidence            456889999999999999999999865421            33334333    11100              0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHH-HHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA-IITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~-~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                      ..+..+.||||||+.++  ...... .+.+.+. ...+|++++|+|++.......     ...+
T Consensus       260 ----------------~~g~~i~l~DT~G~~~~--~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-----~~~l  316 (449)
T PRK05291        260 ----------------LDGIPLRLIDTAGIRET--DDEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-----DEIL  316 (449)
T ss_pred             ----------------ECCeEEEEEeCCCCCCC--ccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-----HHHH
Confidence                            12567899999998764  211111 1112221 144799999999977653322     1111


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..  ..++|+++|+||+|+.+.....      .                           ....+++++||++|.|+++|
T Consensus       317 ~~--~~~~piiiV~NK~DL~~~~~~~------~---------------------------~~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        317 EE--LKDKPVIVVLNKADLTGEIDLE------E---------------------------ENGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             Hh--cCCCCcEEEEEhhhccccchhh------h---------------------------ccCCceEEEEeeCCCCHHHH
Confidence            11  4578999999999997643211      0                           12467899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      ++.|.+.+..
T Consensus       362 ~~~L~~~l~~  371 (449)
T PRK05291        362 REAIKELAFG  371 (449)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.80  E-value=5.7e-19  Score=145.46  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+......++     ...  .....+                       ...     
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~-----~~~--~~~~~~-----------------------~~~-----   45 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTI-----GVD--FKTKTI-----------------------EVD-----   45 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----eeE--EEEEEE-----------------------EEC-----
Confidence            479999999999999999999876643221111     000  000000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   .....+.+|||||+.++.      ......+  ..+|++++|+|..+...... ...++..+.....
T Consensus        46 -------------~~~~~~~l~D~~G~~~~~------~~~~~~~--~~~d~~ilv~d~~~~~s~~~-~~~~l~~~~~~~~  103 (164)
T smart00175       46 -------------GKRVKLQIWDTAGQERFR------SITSSYY--RGAVGALLVYDITNRESFEN-LKNWLKELREYAD  103 (164)
T ss_pred             -------------CEEEEEEEEECCChHHHH------HHHHHHh--CCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCC
Confidence                         113478899999976641      1111112  34699999999876332211 1111221122222


Q ss_pred             cCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      .++|+++|+||+|+...... .+....+.                         . ..+.+++++||++|.|++++++.|
T Consensus       104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~-------------------------~-~~~~~~~e~Sa~~~~~i~~l~~~i  157 (164)
T smart00175      104 PNVVIMLVGNKSDLEDQRQVSREEAEAFA-------------------------E-EHGLPFFETSAKTNTNVEEAFEEL  157 (164)
T ss_pred             CCCeEEEEEEchhcccccCCCHHHHHHHH-------------------------H-HcCCeEEEEeCCCCCCHHHHHHHH
Confidence            57999999999998753211 11111111                         1 124679999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.+.+
T Consensus       158 ~~~~~~  163 (164)
T smart00175      158 AREILK  163 (164)
T ss_pred             HHHHhh
Confidence            987753

Rab GTPases are implicated in vesicle trafficking.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.80  E-value=3.5e-19  Score=152.05  Aligned_cols=163  Identities=18%  Similarity=0.185  Sum_probs=94.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|++|||||||+++|++..+...+..++.       ... ..                       .+...      
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-------~~~-~~-----------------------~~~~~------   43 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-------EMH-RK-----------------------EYEVG------   43 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-------hhe-eE-----------------------EEEEC------
Confidence            589999999999999999998765432211110       000 00                       00000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~  228 (324)
                                  .....+.||||||+.++..       +.. .....+|++++|+|..+..  .....|...+  .....
T Consensus        44 ------------~~~~~l~i~D~~G~~~~~~-------~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i--~~~~~  101 (198)
T cd04147          44 ------------GVSLTLDILDTSGSYSFPA-------MRK-LSIQNSDAFALVYAVDDPESFEEVERLREEI--LEVKE  101 (198)
T ss_pred             ------------CEEEEEEEEECCCchhhhH-------HHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHH--HHhcC
Confidence                        1135788999999876511       111 1123468999999986532  1112222111  12222


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+......... .......                      ......+++++||++|.|++++|+.|
T Consensus       102 ~~~~piilv~NK~Dl~~~~~~v~~-~~~~~~~----------------------~~~~~~~~~~~Sa~~g~gv~~l~~~l  158 (198)
T cd04147         102 DKFVPIVVVGNKADSLEEERQVPA-KDALSTV----------------------ELDWNCGFVETSAKDNENVLEVFKEL  158 (198)
T ss_pred             CCCCcEEEEEEccccccccccccH-HHHHHHH----------------------HhhcCCcEEEecCCCCCCHHHHHHHH
Confidence            357999999999999763211000 0000000                      00113678999999999999999999


Q ss_pred             HHHHHHH
Q 020549          309 EESAQEF  315 (324)
Q Consensus       309 ~~~~~~~  315 (324)
                      .+.+...
T Consensus       159 ~~~~~~~  165 (198)
T cd04147         159 LRQANLP  165 (198)
T ss_pred             HHHhhcc
Confidence            9987643

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.80  E-value=4.1e-19  Score=148.21  Aligned_cols=170  Identities=15%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+...+.+++...      +  ...                       +...     
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~------~--~~~-----------------------~~~~-----   45 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN------Y--VAD-----------------------IEVD-----   45 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccc------e--EEE-----------------------EEEC-----
Confidence            479999999999999999999987654332211000      0  000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||||++++.....      ..  -..+|+++++.|...  ++... ..|...+   ..
T Consensus        46 -------------~~~~~l~i~Dt~G~~~~~~~~~------~~--~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~---~~  101 (175)
T cd01870          46 -------------GKQVELALWDTAGQEDYDRLRP------LS--YPDTDVILMCFSIDSPDSLENIPEKWTPEV---KH  101 (175)
T ss_pred             -------------CEEEEEEEEeCCCchhhhhccc------cc--cCCCCEEEEEEECCCHHHHHHHHHHHHHHH---Hh
Confidence                         1245788999999876521000      01  133577776666543  33222 1232222   11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                       ...++|+++|+||+|+..............          ..  ......+..+.......++++|||++|.|++++|.
T Consensus       102 -~~~~~piilv~nK~Dl~~~~~~~~~i~~~~----------~~--~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  168 (175)
T cd01870         102 -FCPNVPIILVGNKKDLRNDEHTRRELAKMK----------QE--PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFE  168 (175)
T ss_pred             -hCCCCCEEEEeeChhcccChhhhhhhhhcc----------CC--CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHH
Confidence             124789999999999875432211110000          00  00001111111222345799999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|.+.+
T Consensus       169 ~l~~~~  174 (175)
T cd01870         169 MATRAA  174 (175)
T ss_pred             HHHHHh
Confidence            998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01861 Rab6 Rab6 subfamily

Probab=99.80  E-value=2e-19  Score=147.94  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=92.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|++|||||||+++|.+..+.....++.       ....+...                       +...      
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~-----------------------~~~~------   45 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATI-------GIDFLSKT-----------------------MYLE------   45 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccCCCce-------eeeEEEEE-----------------------EEEC------
Confidence            79999999999999999999886654221111       00000000                       0000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~  228 (324)
                                  .....+.+|||||+.++..      .....+  ..+|++++|+|....  +.....|...   +....
T Consensus        46 ------------~~~~~l~~~D~~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~---~~~~~  102 (161)
T cd01861          46 ------------DKTVRLQLWDTAGQERFRS------LIPSYI--RDSSVAVVVYDITNRQSFDNTDKWIDD---VRDER  102 (161)
T ss_pred             ------------CEEEEEEEEECCCcHHHHH------HHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHH---HHHhC
Confidence                        1134688999999866521      111222  345888899888653  2222233221   11122


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+......  ..+....+.                      . ..+.+++++||++|.|+++++..|
T Consensus       103 ~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~v~~l~~~i  157 (161)
T cd01861         103 GNDVIIVLVGNKTDLSDKRQV--STEEGEKKA----------------------K-ELNAMFIETSAKAGHNVKELFRKI  157 (161)
T ss_pred             CCCCEEEEEEEChhccccCcc--CHHHHHHHH----------------------H-HhCCEEEEEeCCCCCCHHHHHHHH
Confidence            235999999999999643211  011111110                      1 124789999999999999999999


Q ss_pred             HHH
Q 020549          309 EES  311 (324)
Q Consensus       309 ~~~  311 (324)
                      .+.
T Consensus       158 ~~~  160 (161)
T cd01861         158 ASA  160 (161)
T ss_pred             HHh
Confidence            875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04117 Rab15 Rab15 subfamily

Probab=99.80  E-value=2.5e-19  Score=147.80  Aligned_cols=158  Identities=16%  Similarity=0.138  Sum_probs=93.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|+|||||++++++..+...+.+++.     .. + ....+                       ...     
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~-----~~-~-~~~~~-----------------------~~~-----   45 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG-----VD-F-KMKTI-----------------------EVD-----   45 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee-----eE-E-EEEEE-----------------------EEC-----
Confidence            3699999999999999999998776543222110     00 0 00000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..      .....+  ..+|++++++|...  ++.....|..   .+...
T Consensus        46 -------------~~~~~l~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~sf~~~~~~~~---~~~~~  101 (161)
T cd04117          46 -------------GIKVRIQIWDTAGQERYQT------ITKQYY--RRAQGIFLVYDISSERSYQHIMKWVS---DVDEY  101 (161)
T ss_pred             -------------CEEEEEEEEeCCCcHhHHh------hHHHHh--cCCcEEEEEEECCCHHHHHHHHHHHH---HHHHh
Confidence                         1135688999999877521      111122  23577777777654  3333333432   22233


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+........  +....+.                      +. ...+++++||++|.||+++|..
T Consensus       102 ~~~~~~iilvgnK~Dl~~~~~v~~--~~~~~~~----------------------~~-~~~~~~e~Sa~~~~~v~~~f~~  156 (161)
T cd04117         102 APEGVQKILIGNKADEEQKRQVGD--EQGNKLA----------------------KE-YGMDFFETSACTNSNIKESFTR  156 (161)
T ss_pred             CCCCCeEEEEEECcccccccCCCH--HHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHH
Confidence            334689999999999875432110  1111111                      11 1367899999999999999999


Q ss_pred             HHHH
Q 020549          308 VEES  311 (324)
Q Consensus       308 i~~~  311 (324)
                      |.+.
T Consensus       157 l~~~  160 (161)
T cd04117         157 LTEL  160 (161)
T ss_pred             HHhh
Confidence            9864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PLN03118 Rab family protein; Provisional

Probab=99.80  E-value=1.2e-18  Score=150.29  Aligned_cols=168  Identities=15%  Similarity=0.205  Sum_probs=99.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+|+|++|||||||+++|++..+... .       +... ..+.    +..                  +... 
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~-------~t~~-~~~~----~~~------------------~~~~-   58 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-A-------PTIG-VDFK----IKQ------------------LTVG-   58 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCc-C-------CCce-eEEE----EEE------------------EEEC-
Confidence            34568999999999999999999998754321 0       0000 0000    000                  0000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~  222 (324)
                                       .....+.||||||++++..      .....+  ..+|++|+|+|......  .. ..|...+ 
T Consensus        59 -----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~vlv~D~~~~~sf~~~~~~~~~~~-  112 (211)
T PLN03118         59 -----------------GKRLKLTIWDTAGQERFRT------LTSSYY--RNAQGIILVYDVTRRETFTNLSDVWGKEV-  112 (211)
T ss_pred             -----------------CEEEEEEEEECCCchhhHH------HHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHH-
Confidence                             1235788999999887621      111122  23589999999865321  11 1232222 


Q ss_pred             HHHHH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          223 ACSIL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       223 ~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                        ... ...+.|+++|+||+|+.......  .+....+.                      . ....+++++||++|.|+
T Consensus       113 --~~~~~~~~~~~ilv~NK~Dl~~~~~i~--~~~~~~~~----------------------~-~~~~~~~e~SAk~~~~v  165 (211)
T PLN03118        113 --ELYSTNQDCVKMLVGNKVDRESERDVS--REEGMALA----------------------K-EHGCLFLECSAKTRENV  165 (211)
T ss_pred             --HHhcCCCCCCEEEEEECccccccCccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCH
Confidence              111 13467999999999997543210  00111110                      0 12367899999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 020549          302 EAYFKAVEESAQEFMET  318 (324)
Q Consensus       302 ~~l~~~i~~~~~~~~~~  318 (324)
                      +++|+.|.+.+...+..
T Consensus       166 ~~l~~~l~~~~~~~~~~  182 (211)
T PLN03118        166 EQCFEELALKIMEVPSL  182 (211)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999988765543

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.80  E-value=2.3e-19  Score=157.95  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=94.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++|++..+...+.+++       ... +...+.                       .      
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi-------~d~-~~k~~~-----------------------i------   43 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-------EDF-HRKLYS-----------------------I------   43 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh-------hHh-EEEEEE-----------------------E------
Confidence            369999999999999999999877754332211       000 000000                       0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                  ....+.+.||||+|++++..       +... .-..+|++++|+|..+  ++.....|...+......
T Consensus        44 ------------~~~~~~l~I~Dt~G~~~~~~-------~~~~-~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~  103 (247)
T cd04143          44 ------------RGEVYQLDILDTSGNHPFPA-------MRRL-SILTGDVFILVFSLDNRESFEEVCRLREQILETKSC  103 (247)
T ss_pred             ------------CCEEEEEEEEECCCChhhhH-------HHHH-HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcc
Confidence                        01235778999999876521       1111 1123577777776654  333333443333211110


Q ss_pred             ------hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          228 ------YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       228 ------~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                            ...++|+|+|+||+|+......  ..+++..+.                      ......+++++||++|.|+
T Consensus       104 ~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~----------------------~~~~~~~~~evSAktg~gI  159 (247)
T cd04143         104 LKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLV----------------------GGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             cccccccCCCCcEEEEEECccchhcccc--CHHHHHHHH----------------------HhcCCCEEEEEeCCCCCCH
Confidence                  2247899999999999753211  111111110                      0012467999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          302 EAYFKAVEESA  312 (324)
Q Consensus       302 ~~l~~~i~~~~  312 (324)
                      +++|..|....
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.80  E-value=7.9e-19  Score=144.62  Aligned_cols=159  Identities=16%  Similarity=0.222  Sum_probs=94.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+......+.     +......+..++                              
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~~~~~~v~~~------------------------------   46 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTI-----GAAFLTQTVNLD------------------------------   46 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc-----ceeEEEEEEEEC------------------------------
Confidence            579999999999999999999987654221111     000000000000                              


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+.++..       +.... -..+|++++++|+....  .....|   +..+...
T Consensus        47 -------------~~~~~~~i~D~~G~~~~~~-------~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~~  102 (163)
T cd01860          47 -------------DTTVKFEIWDTAGQERYRS-------LAPMY-YRGAAAAIVVYDITSEESFEKAKSW---VKELQRN  102 (163)
T ss_pred             -------------CEEEEEEEEeCCchHHHHH-------HHHHH-hccCCEEEEEEECcCHHHHHHHHHH---HHHHHHh
Confidence                         1245788999999766421       11111 13468999999986432  222222   2222222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+......  ..+....+..                     .  ...+++++||++|.|++++++.
T Consensus       103 ~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~~~  157 (163)
T cd01860         103 ASPNIIIALVGNKADLESKRQV--STEEAQEYAD---------------------E--NGLLFFETSAKTGENVNELFTE  157 (163)
T ss_pred             CCCCCeEEEEEECccccccCcC--CHHHHHHHHH---------------------H--cCCEEEEEECCCCCCHHHHHHH
Confidence            2356899999999998743211  0011111110                     1  1367999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       158 l~~~l  162 (163)
T cd01860         158 IAKKL  162 (163)
T ss_pred             HHHHh
Confidence            98876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=9.9e-19  Score=175.46  Aligned_cols=171  Identities=19%  Similarity=0.236  Sum_probs=107.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|++|||||||+|+|++..+..            +..+++++    ++.+.              ..+.    
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~------------v~~~~gtT----~d~~~--------------~~~~----  494 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAV------------VNDLAGTT----RDPVD--------------EIVE----  494 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccc------------cCCCCCCC----cCcce--------------eEEE----
Confidence            34789999999999999999999875431            33344443    11110              0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHH---Hh-ccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA---FA-STFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~---~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                     ..+..+.||||||+.+... ...+......   .. -..+|++++|+|+..+...++.     ..
T Consensus       495 ---------------~~~~~~~liDTaG~~~~~~-~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~-----~i  553 (712)
T PRK09518        495 ---------------IDGEDWLFIDTAGIKRRQH-KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL-----KV  553 (712)
T ss_pred             ---------------ECCCEEEEEECCCcccCcc-cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH-----HH
Confidence                           1255788999999865311 1111111111   11 1347999999999988765542     12


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +..+...++|+|+|+||+|+.+......+...+..   .+                   ....+.+++++||++|.|+++
T Consensus       554 ~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~---~l-------------------~~~~~~~ii~iSAktg~gv~~  611 (712)
T PRK09518        554 MSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT---EF-------------------DRVTWARRVNLSAKTGWHTNR  611 (712)
T ss_pred             HHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH---hc-------------------cCCCCCCEEEEECCCCCCHHH
Confidence            23444568999999999999875432211111110   00                   123457899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      |++.+.+..+..
T Consensus       612 L~~~i~~~~~~~  623 (712)
T PRK09518        612 LAPAMQEALESW  623 (712)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987753

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.80  E-value=6e-19  Score=144.97  Aligned_cols=114  Identities=23%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HHHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ...+.||||||+.++..      .....+  ..+|+++||+|+++...- ..+...+.. +......+.|+++|+||+|+
T Consensus        43 ~~~l~i~D~~G~~~~~~------~~~~~~--~~~~~iv~v~D~~~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  113 (160)
T cd04156          43 HLSLTVWDVGGQEKMRT------VWKCYL--ENTDGLVYVVDSSDEARL-DESQKELKHILKNEHIKGVPVVLLANKQDL  113 (160)
T ss_pred             ceEEEEEECCCCHhHHH------HHHHHh--ccCCEEEEEEECCcHHHH-HHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence            45789999999866411      111112  346899999998765311 111111111 11112257999999999998


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      .......+....+. + .                     .+.  ...+++++||++|+|++++|+.|.+
T Consensus       114 ~~~~~~~~i~~~~~-~-~---------------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         114 PGALTAEEITRRFK-L-K---------------------KYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccCcCHHHHHHHcC-C-c---------------------ccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            64321111111110 0 0                     111  2346899999999999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.80  E-value=8.8e-19  Score=147.39  Aligned_cols=160  Identities=19%  Similarity=0.248  Sum_probs=93.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|.+|||||||+++|....+.. ..       |++. ..... ++                            
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~-------pt~g-~~~~~-~~----------------------------   57 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TI-------PTIG-FNVET-VE----------------------------   57 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCcc-cc-------CCcc-eeEEE-EE----------------------------
Confidence            45789999999999999999998654431 11       1110 00000 00                            


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.++..      ....++  ..+|++|||+|+++...- ..+...+.  ..+
T Consensus        58 ---------------~~~~~~~i~D~~Gq~~~~~------~~~~~~--~~a~~iI~V~D~s~~~s~-~~~~~~l~--~~l  111 (181)
T PLN00223         58 ---------------YKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRDRV-VEARDELH--RML  111 (181)
T ss_pred             ---------------ECCEEEEEEECCCCHHHHH------HHHHHh--ccCCEEEEEEeCCcHHHH-HHHHHHHH--HHh
Confidence                           2256789999999866511      111122  336899999998753211 11211121  111


Q ss_pred             h---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       228 ~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~  303 (324)
                      .   ..+.|+++|+||+|+.......+..+.+                     +.  ... .....++++||++|+||++
T Consensus       112 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---------------------~l--~~~~~~~~~~~~~Sa~~g~gv~e  168 (181)
T PLN00223        112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKL---------------------GL--HSLRQRHWYIQSTCATSGEGLYE  168 (181)
T ss_pred             cCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---------------------Cc--cccCCCceEEEeccCCCCCCHHH
Confidence            1   1468999999999987543221111111                     00  000 0112466899999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          304 YFKAVEESAQE  314 (324)
Q Consensus       304 l~~~i~~~~~~  314 (324)
                      +|+.|.+.+..
T Consensus       169 ~~~~l~~~~~~  179 (181)
T PLN00223        169 GLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHhh
Confidence            99999887653

>cd04125 RabA_like RabA-like subfamily

Probab=99.79  E-value=1.3e-18  Score=147.19  Aligned_cols=162  Identities=14%  Similarity=0.209  Sum_probs=96.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+..++            +.......                  +...     
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~------------~~~~~~~~------------------~~~~-----   45 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI------------GVDFKIKT------------------VYIE-----   45 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce------------eeEEEEEE------------------EEEC-----
Confidence            479999999999999999999887654222111            00000000                  0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   .....+.||||||+.++..       +...+ -..+|++++|+|...... ......++..+.....
T Consensus        46 -------------~~~~~~~i~Dt~g~~~~~~-------~~~~~-~~~~d~iilv~d~~~~~s-~~~i~~~~~~i~~~~~  103 (188)
T cd04125          46 -------------NKIIKLQIWDTNGQERFRS-------LNNSY-YRGAHGYLLVYDVTDQES-FENLKFWINEINRYAR  103 (188)
T ss_pred             -------------CEEEEEEEEECCCcHHHHh-------hHHHH-ccCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhCC
Confidence                         1235678999999766421       11111 134689999999765321 1111112222233333


Q ss_pred             cCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ...|+++|+||+|+.+..... .....+   .                      .. .+.+++++||++|.|++++|..|
T Consensus       104 ~~~~~ivv~nK~Dl~~~~~v~~~~~~~~---~----------------------~~-~~~~~~evSa~~~~~i~~~f~~l  157 (188)
T cd04125         104 ENVIKVIVANKSDLVNNKVVDSNIAKSF---C----------------------DS-LNIPFFETSAKQSINVEEAFILL  157 (188)
T ss_pred             CCCeEEEEEECCCCcccccCCHHHHHHH---H----------------------HH-cCCeEEEEeCCCCCCHHHHHHHH
Confidence            468999999999987543110 011111   0                      11 24589999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.+..
T Consensus       158 ~~~~~~  163 (188)
T cd04125         158 VKLIIK  163 (188)
T ss_pred             HHHHHH
Confidence            998764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.79  E-value=2.9e-18  Score=166.86  Aligned_cols=136  Identities=21%  Similarity=0.320  Sum_probs=77.9

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+.||||||++.|..      .....  ...+|++++|+|+.++..++++.     .+..+...++|+++|+||+|+..
T Consensus        69 ~~l~~iDTpG~e~f~~------l~~~~--~~~aD~~IlVvD~~~g~~~qt~e-----~i~~l~~~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        69 PGLLFIDTPGHEAFTN------LRKRG--GALADLAILIVDINEGFKPQTQE-----ALNILRMYKTPFVVAANKIDRIP  135 (590)
T ss_pred             CcEEEEECCCcHhHHH------HHHHH--HhhCCEEEEEEECCcCCCHhHHH-----HHHHHHHcCCCEEEEEECCCccc
Confidence            3589999999877621      11111  13579999999999887766532     22344556899999999999975


Q ss_pred             hHhH---HHHHHhHHHHHHHHhcC-ccchhhHHH---HHHHh------HHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549          246 HEFA---LEWMQDFEVFQAAISSD-HSYTSTLTN---SLSLA------LDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       246 ~~~~---~~~~~~~~~l~~~~~~~-~~~~~~l~~---~~~~~------~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                      ....   ..+.+............ ......+..   +++..      ++++....+++|+||++|+|+++|+..|....
T Consensus       136 ~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       136 GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            3110   00111000000000000 000011111   11111      12455668999999999999999999887655


Q ss_pred             HH
Q 020549          313 QE  314 (324)
Q Consensus       313 ~~  314 (324)
                      ..
T Consensus       216 ~~  217 (590)
T TIGR00491       216 QQ  217 (590)
T ss_pred             HH
Confidence            43

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.79  E-value=1.6e-18  Score=142.61  Aligned_cols=108  Identities=11%  Similarity=0.078  Sum_probs=66.8

Q ss_pred             EEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhH
Q 020549          170 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFA  249 (324)
Q Consensus       170 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~  249 (324)
                      +|||||+...  +......+...+  ..+|++++|+|+.........|.  .   . + ..++|+++|+||+|+.+.+ .
T Consensus        41 ~iDtpG~~~~--~~~~~~~~~~~~--~~ad~il~v~d~~~~~s~~~~~~--~---~-~-~~~~~ii~v~nK~Dl~~~~-~  108 (158)
T PRK15467         41 DIDTPGEYFS--HPRWYHALITTL--QDVDMLIYVHGANDPESRLPAGL--L---D-I-GVSKRQIAVISKTDMPDAD-V  108 (158)
T ss_pred             cccCCccccC--CHHHHHHHHHHH--hcCCEEEEEEeCCCcccccCHHH--H---h-c-cCCCCeEEEEEccccCccc-H
Confidence            6999997432  111122222222  34699999999987654333221  1   1 1 2468999999999986532 1


Q ss_pred             HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          250 LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       250 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                          ..+..+..                     ......|++++||++|+|+++||+.|.+.+.+
T Consensus       109 ----~~~~~~~~---------------------~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        109 ----AATRKLLL---------------------ETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             ----HHHHHHHH---------------------HcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence                11111111                     11112589999999999999999999988754

>PRK11058 GTPase HflX; Provisional

Probab=99.79  E-value=1.2e-18  Score=164.03  Aligned_cols=162  Identities=23%  Similarity=0.260  Sum_probs=96.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|++|||||||+|+|++..+.             +.+.+++| .|...                ..+..     
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-------------v~~~~~tT-ld~~~----------------~~i~l-----  241 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVY-------------AADQLFAT-LDPTL----------------RRIDV-----  241 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcee-------------eccCCCCC-cCCce----------------EEEEe-----
Confidence            367999999999999999999886432             22222222 11000                00000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchh--HHHhHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMT--FMSNMLYACS  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~  225 (324)
                                    .....+.||||||+.+........ .+...+.. ..+|++++|+|+++......  .|...+   .
T Consensus       242 --------------~~~~~~~l~DTaG~~r~lp~~lve-~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL---~  303 (426)
T PRK11058        242 --------------ADVGETVLADTVGFIRHLPHDLVA-AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVL---E  303 (426)
T ss_pred             --------------CCCCeEEEEecCcccccCCHHHHH-HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHH---H
Confidence                          112377899999985421111111 12222222 45799999999977532221  222222   3


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc-eeeeccccCCChHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-iv~vSA~~g~gv~~l  304 (324)
                      .+...++|+++|+||+|+......     ...                         ......+ ++++||++|.|+++|
T Consensus       304 el~~~~~pvIiV~NKiDL~~~~~~-----~~~-------------------------~~~~~~~~~v~ISAktG~GIdeL  353 (426)
T PRK11058        304 EIDAHEIPTLLVMNKIDMLDDFEP-----RID-------------------------RDEENKPIRVWLSAQTGAGIPLL  353 (426)
T ss_pred             HhccCCCCEEEEEEcccCCCchhH-----HHH-------------------------HHhcCCCceEEEeCCCCCCHHHH
Confidence            333457999999999999753210     010                         0001223 588999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      ++.|.+.+.
T Consensus       354 ~e~I~~~l~  362 (426)
T PRK11058        354 FQALTERLS  362 (426)
T ss_pred             HHHHHHHhh
Confidence            999998875

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.79  E-value=1.4e-18  Score=145.46  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=92.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|.+|||||||+++|....+.. ..       |+.       .+++..                  + .    
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~-------~t~-------~~~~~~------------------~-~----   53 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVT-TI-------PTI-------GFNVET------------------V-T----   53 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCC-cC-------Ccc-------ccceEE------------------E-E----
Confidence            45889999999999999999997554321 10       110       000000                  0 0    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-HH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~  226 (324)
                                     .....+.||||||+.++..      ....++  ..+|++|||+|.+.... .......+..+ ..
T Consensus        54 ---------------~~~~~l~l~D~~G~~~~~~------~~~~~~--~~ad~ii~v~D~t~~~s-~~~~~~~l~~~~~~  109 (175)
T smart00177       54 ---------------YKNISFTVWDVGGQDKIRP------LWRHYY--TNTQGLIFVVDSNDRDR-IDEAREELHRMLNE  109 (175)
T ss_pred             ---------------ECCEEEEEEECCCChhhHH------HHHHHh--CCCCEEEEEEECCCHHH-HHHHHHHHHHHhhC
Confidence                           1256789999999876511      111122  34689999999865321 11111112111 11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......++.+.+.                     ... .......++++||++|.||+++|+
T Consensus       110 ~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~~Sa~~g~gv~e~~~  167 (175)
T smart00177      110 DELRDAVILVFANKQDLPDAMKAAEITEKLG---------------------LHS-IRDRNWYIQPTCATSGDGLYEGLT  167 (175)
T ss_pred             HhhcCCcEEEEEeCcCcccCCCHHHHHHHhC---------------------ccc-cCCCcEEEEEeeCCCCCCHHHHHH
Confidence            1124689999999999865321111111110                     000 001124577899999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|.+.+
T Consensus       168 ~l~~~~  173 (175)
T smart00177      168 WLSNNL  173 (175)
T ss_pred             HHHHHh
Confidence            998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.79  E-value=3e-19  Score=138.66  Aligned_cols=163  Identities=21%  Similarity=0.274  Sum_probs=113.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++.+|+|.+|+|||+|+.++....|...+..++ +.|..           +|..                          
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTi-GvDfk-----------irTv--------------------------   50 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI-GVDFK-----------IRTV--------------------------   50 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEe-eeeEE-----------EEEe--------------------------
Confidence            557899999999999999999998876655443 11111           1110                          


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                ...+..++++||||+|+++|..      +...+++.+..-++||.|.+.+++.....|.+.+.   . ..
T Consensus        51 ----------~i~G~~VkLqIwDtAGqErFrt------itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~---~-nc  110 (198)
T KOG0079|consen   51 ----------DINGDRVKLQIWDTAGQERFRT------ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIR---N-NC  110 (198)
T ss_pred             ----------ecCCcEEEEEEeecccHHHHHH------HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHH---h-cC
Confidence                      0013467899999999998832      55556666767788899999999998888865542   2 22


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...|-|+|+||+|......+..  ++-+.+              +.         ..++.++++|||...|++..|..|.
T Consensus       111 dsv~~vLVGNK~d~~~RrvV~t--~dAr~~--------------A~---------~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen  111 DSVPKVLVGNKNDDPERRVVDT--EDARAF--------------AL---------QMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             ccccceecccCCCCccceeeeh--HHHHHH--------------HH---------hcCchheehhhhhcccchHHHHHHH
Confidence            3688899999999987643211  111111              11         1357899999999999999999998


Q ss_pred             HHHHHH
Q 020549          310 ESAQEF  315 (324)
Q Consensus       310 ~~~~~~  315 (324)
                      +.....
T Consensus       166 ~qvl~~  171 (198)
T KOG0079|consen  166 KQVLQA  171 (198)
T ss_pred             HHHHHH
Confidence            876543

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.79  E-value=1.4e-18  Score=150.21  Aligned_cols=171  Identities=17%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|.+|||||||+++|++..+...+.+++..      .+  ...+.                       .      
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~------~~--~~~~~-----------------------~------   44 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFE------NY--TASFE-----------------------I------   44 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc------ce--EEEEE-----------------------E------
Confidence            57999999999999999999998877554443311      00  00000                       0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~  226 (324)
                                  ....+.+.||||+|++++..       +.. ..-..+|++++|+|..+.  +... ..|...+   . 
T Consensus        45 ------------~~~~v~L~iwDt~G~e~~~~-------l~~-~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~---~-  100 (222)
T cd04173          45 ------------DKRRIELNMWDTSGSSYYDN-------VRP-LAYPDSDAVLICFDISRPETLDSVLKKWQGET---Q-  100 (222)
T ss_pred             ------------CCEEEEEEEEeCCCcHHHHH-------HhH-HhccCCCEEEEEEECCCHHHHHHHHHHHHHHH---H-
Confidence                        02246788999999877521       111 111346888888887553  2222 2333221   1 


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-hHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-IEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v~~l~  305 (324)
                      ....+.|+|||+||+|+.......   ..+.   .. .     ...+..+.+..+..-....++++|||+++.| |+++|
T Consensus       101 ~~~~~~piiLVgnK~DL~~~~~~~---~~~~---~~-~-----~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F  168 (222)
T cd04173         101 EFCPNAKVVLVGCKLDMRTDLATL---RELS---KQ-R-----LIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVF  168 (222)
T ss_pred             hhCCCCCEEEEEECcccccchhhh---hhhh---hc-c-----CCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHH
Confidence            123578999999999997532110   0000   00 0     0001111121111222335899999999985 99999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      ..+.....
T Consensus       169 ~~~~~~~~  176 (222)
T cd04173         169 HVATVASL  176 (222)
T ss_pred             HHHHHHHH
Confidence            99988653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.79  E-value=1.7e-18  Score=144.36  Aligned_cols=117  Identities=20%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             CCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCC-----Cch---hHHHhHHHHHHHHh-------
Q 020549          165 HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA-----NPM---TFMSNMLYACSILY-------  228 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~-----~~~---~~~~~~~~~~~~~~-------  228 (324)
                      +..+.||||||+.+..... .....+...+  ..+|++++|+|+....     ...   ..|...+   ....       
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  117 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADAILHVVDASEDDDIGGVDPLEDYEILNAEL---KLYDLETILGL  117 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHH--hccCEEEEEEeccCCccccccCHHHHHHHHHHHH---HHhhhhhHHHH
Confidence            5678999999985432111 1111222222  2368999999997653     222   2232222   1111       


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+........+.....                         ......+++++||++|.|++++++.|
T Consensus       118 ~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~~~gl~~l~~~l  172 (176)
T cd01881         118 LTAKPVIYVLNKIDLDDAEELEEELVREL-------------------------ALEEGAEVVPISAKTEEGLDELIRAI  172 (176)
T ss_pred             HhhCCeEEEEEchhcCchhHHHHHHHHHH-------------------------hcCCCCCEEEEehhhhcCHHHHHHHH
Confidence            14799999999999987654332210000                         11235679999999999999999998


Q ss_pred             HHH
Q 020549          309 EES  311 (324)
Q Consensus       309 ~~~  311 (324)
                      ...
T Consensus       173 ~~~  175 (176)
T cd01881         173 YEL  175 (176)
T ss_pred             Hhh
Confidence            764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04114 Rab30 Rab30 subfamily

Probab=99.79  E-value=1.3e-18  Score=144.18  Aligned_cols=160  Identities=16%  Similarity=0.165  Sum_probs=95.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|++|||||||+++|++..+......++.     .......                         +...   
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----~~~~~~~-------------------------~~~~---   52 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG-----VDFMIKT-------------------------VEIK---   52 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----eEEEEEE-------------------------EEEC---
Confidence            347899999999999999999997655432211110     0000000                         0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                                     .....+.+|||||+.++.  .    .....+  ..+|++++++|......  ....|.   ..+.
T Consensus        53 ---------------~~~~~~~~~D~~g~~~~~--~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~---~~l~  106 (169)
T cd04114          53 ---------------GEKIKLQIWDTAGQERFR--S----ITQSYY--RSANALILTYDITCEESFRCLPEWL---REIE  106 (169)
T ss_pred             ---------------CEEEEEEEEECCCcHHHH--H----HHHHHh--cCCCEEEEEEECcCHHHHHHHHHHH---HHHH
Confidence                           113467899999986641  1    111122  33689999999865321  122332   2223


Q ss_pred             HHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .+...+.|+++|+||+|+...... ....+.+.                         .. ...+++++||++|.|++++
T Consensus       107 ~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~-------------------------~~-~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114         107 QYANNKVITILVGNKIDLAERREVSQQRAEEFS-------------------------DA-QDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             HhCCCCCeEEEEEECcccccccccCHHHHHHHH-------------------------HH-cCCeEEEeeCCCCCCHHHH
Confidence            334457999999999998754321 11111111                         11 2367999999999999999


Q ss_pred             HHHHHHHH
Q 020549          305 FKAVEESA  312 (324)
Q Consensus       305 ~~~i~~~~  312 (324)
                      |+.|.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99998753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=7.2e-19  Score=168.90  Aligned_cols=162  Identities=23%  Similarity=0.237  Sum_probs=100.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|.+|||||||+|+|++.....            +...++.+    ++.+.              +...    
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------v~~~~gvT----~d~~~--------------~~~~----   82 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAV------------VEDVPGVT----RDRVS--------------YDAE----   82 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccc------------ccCCCCCC----EeeEE--------------EEEE----
Confidence            34789999999999999999999865431            22222222    11100              0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                     ..+..+.||||||+...  .......+.....  -..+|+++||+|++.+....+.     ....
T Consensus        83 ---------------~~~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~-----~i~~  140 (472)
T PRK03003         83 ---------------WNGRRFTVVDTGGWEPD--AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDE-----AVAR  140 (472)
T ss_pred             ---------------ECCcEEEEEeCCCcCCc--chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-----HHHH
Confidence                           22557899999998642  1112112222211  1347999999999887654331     1123


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .+...++|+|+|+||+|+......  . ..+.                         . .....+++|||++|.|+++|+
T Consensus       141 ~l~~~~~piilV~NK~Dl~~~~~~--~-~~~~-------------------------~-~g~~~~~~iSA~~g~gi~eL~  191 (472)
T PRK03003        141 VLRRSGKPVILAANKVDDERGEAD--A-AALW-------------------------S-LGLGEPHPVSALHGRGVGDLL  191 (472)
T ss_pred             HHHHcCCCEEEEEECccCCccchh--h-HHHH-------------------------h-cCCCCeEEEEcCCCCCcHHHH
Confidence            444578999999999998643210  1 0000                         0 122346799999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+++
T Consensus       192 ~~i~~~l~~  200 (472)
T PRK03003        192 DAVLAALPE  200 (472)
T ss_pred             HHHHhhccc
Confidence            999988765

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.79  E-value=1.1e-18  Score=146.88  Aligned_cols=162  Identities=18%  Similarity=0.221  Sum_probs=93.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +...+|+++|++|||||||++++....+.. ..       |+.. ..+.. ++                           
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~-------~T~~-~~~~~-~~---------------------------   57 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TI-------PTIG-FNVET-VE---------------------------   57 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cC-------Cccc-cceEE-EE---------------------------
Confidence            345789999999999999999997654431 11       1110 00000 00                           


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-H
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-S  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~  225 (324)
                                      ..+..+.+|||||+.++.  .    ....++  ..+|++|||+|+.+... ...+...+..+ .
T Consensus        58 ----------------~~~~~~~l~D~~G~~~~~--~----~~~~~~--~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~  112 (182)
T PTZ00133         58 ----------------YKNLKFTMWDVGGQDKLR--P----LWRHYY--QNTNGLIFVVDSNDRER-IGDAREELERMLS  112 (182)
T ss_pred             ----------------ECCEEEEEEECCCCHhHH--H----HHHHHh--cCCCEEEEEEeCCCHHH-HHHHHHHHHHHHh
Confidence                            125678999999986641  1    111122  23689999999864211 11111112111 1


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~  303 (324)
                      .-...+.|+++|+||+|+.......+....+.                     .   .+.  ....++++||++|.|+++
T Consensus       113 ~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~---------------------~---~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133        113 EDELRDAVLLVFANKQDLPNAMSTTEVTEKLG---------------------L---HSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             CHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhC---------------------C---CcccCCcEEEEeeeCCCCCCHHH
Confidence            11114689999999999865321111111110                     0   001  123577899999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          304 YFKAVEESAQE  314 (324)
Q Consensus       304 l~~~i~~~~~~  314 (324)
                      +|+.|.+.+..
T Consensus       169 ~~~~l~~~i~~  179 (182)
T PTZ00133        169 GLDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>PLN03110 Rab GTPase; Provisional

Probab=99.79  E-value=5e-19  Score=153.10  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=99.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|++|||||||+++|.+..+...+.+++     ++......                         +...   
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~-----g~~~~~~~-------------------------v~~~---   57 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-----GVEFATRT-------------------------LQVE---   57 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce-----eEEEEEEE-------------------------EEEC---
Confidence            45789999999999999999999876653222111     00000000                         0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..      .....+  ..++++++|+|....  +.....|..   .+.
T Consensus        58 ---------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~---~~~  111 (216)
T PLN03110         58 ---------------GKTVKAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKRQTFDNVQRWLR---ELR  111 (216)
T ss_pred             ---------------CEEEEEEEEECCCcHHHHH------HHHHHh--CCCCEEEEEEECCChHHHHHHHHHHH---HHH
Confidence                           1245788999999877521      111222  246888999987543  222223322   222


Q ss_pred             HHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .....+.|+++|+||+|+...... .+....+.                         . ....+++++||++|.|++++
T Consensus       112 ~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~-------------------------~-~~~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110        112 DHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA-------------------------E-KEGLSFLETSALEATNVEKA  165 (216)
T ss_pred             HhCCCCCeEEEEEEChhcccccCCCHHHHHHHH-------------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence            233357999999999998653221 11111110                         1 12578999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      |+.|.+.+..
T Consensus       166 f~~l~~~i~~  175 (216)
T PLN03110        166 FQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>cd01863 Rab18 Rab18 subfamily

Probab=99.79  E-value=1e-18  Score=143.71  Aligned_cols=158  Identities=20%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+.....++.     +.   .+..    .                  .+...     
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~~---~~~~----~------------------~~~~~-----   45 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATI-----GV---DFKV----K------------------TLTVD-----   45 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcc-----cc---eEEE----E------------------EEEEC-----
Confidence            479999999999999999999876543211100     00   0000    0                  00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+..+..   .   ....+  ..+|++++++|......  ....|...+.  ...
T Consensus        46 -------------~~~~~~~l~D~~g~~~~~~---~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~--~~~  102 (161)
T cd01863          46 -------------GKKVKLAIWDTAGQERFRT---L---TSSYY--RGAQGVILVYDVTRRDTFTNLETWLNELE--TYS  102 (161)
T ss_pred             -------------CEEEEEEEEECCCchhhhh---h---hHHHh--CCCCEEEEEEECCCHHHHHhHHHHHHHHH--HhC
Confidence                         1235789999999866421   1   11111  24689999999764322  1222222111  122


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......+   ....+.                      . ....+++++||++|.|++++++.
T Consensus       103 ~~~~~~~~iv~nK~D~~~~~~~~~---~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~~~~~  156 (161)
T cd01863         103 TNNDIVKMLVGNKIDKENREVTRE---EGLKFA----------------------R-KHNMLFIETSAKTRDGVQQAFEE  156 (161)
T ss_pred             CCCCCcEEEEEECCcccccccCHH---HHHHHH----------------------H-HcCCEEEEEecCCCCCHHHHHHH
Confidence            245789999999999984321111   111111                      1 12468999999999999999999


Q ss_pred             HHHH
Q 020549          308 VEES  311 (324)
Q Consensus       308 i~~~  311 (324)
                      +.+.
T Consensus       157 ~~~~  160 (161)
T cd01863         157 LVEK  160 (161)
T ss_pred             HHHh
Confidence            8764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.79  E-value=2.2e-18  Score=167.93  Aligned_cols=165  Identities=19%  Similarity=0.302  Sum_probs=102.2

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...++++|+++|++|+|||||+++|.+..+.......+            +.++.                    .....
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GI------------T~~ig--------------------~~~v~  130 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGI------------TQHIG--------------------AYHVE  130 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCce------------eecce--------------------EEEEE
Confidence            34577889999999999999999998875543211100            00000                    00000


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                         +              .....+.||||||+++|..      ...+.  ...+|++++|+|+.++..+++.     ..+
T Consensus       131 ---~--------------~~~~~i~~iDTPGhe~F~~------~r~rg--a~~aDiaILVVda~dgv~~qT~-----e~i  180 (587)
T TIGR00487       131 ---N--------------EDGKMITFLDTPGHEAFTS------MRARG--AKVTDIVVLVVAADDGVMPQTI-----EAI  180 (587)
T ss_pred             ---E--------------CCCcEEEEEECCCCcchhh------HHHhh--hccCCEEEEEEECCCCCCHhHH-----HHH
Confidence               0              0122789999999887622      11111  2446999999999888766552     223


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+...++|+|+|+||+|+..... ......+.                  ..+...+.|....+++++||++|+|+++|
T Consensus       181 ~~~~~~~vPiIVviNKiDl~~~~~-e~v~~~L~------------------~~g~~~~~~~~~~~~v~iSAktGeGI~eL  241 (587)
T TIGR00487       181 SHAKAANVPIIVAINKIDKPEANP-DRVKQELS------------------EYGLVPEDWGGDTIFVPVSALTGDGIDEL  241 (587)
T ss_pred             HHHHHcCCCEEEEEECcccccCCH-HHHHHHHH------------------HhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence            445567899999999999964321 11111111                  01111113333468999999999999999


Q ss_pred             HHHHHH
Q 020549          305 FKAVEE  310 (324)
Q Consensus       305 ~~~i~~  310 (324)
                      ++.|..
T Consensus       242 l~~I~~  247 (587)
T TIGR00487       242 LDMILL  247 (587)
T ss_pred             HHhhhh
Confidence            999875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=7.3e-19  Score=136.38  Aligned_cols=168  Identities=17%  Similarity=0.232  Sum_probs=114.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      -.+++.|+|.+.+|||||+.+.++..|...+..++ +.+.-+           .                  .+..+   
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKv-----------K------------------Tvyr~---   66 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKV-----------K------------------TVYRS---   66 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEE-----------e------------------Eeeec---
Confidence            45689999999999999999999998876543332 111100           0                  01111   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .+.+++++|||+|++++.      .....+++.+.+-+++|.+.+.+++....-|...+   ...
T Consensus        67 ---------------~kRiklQiwDTagqEryr------tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqI---kty  122 (193)
T KOG0093|consen   67 ---------------DKRIKLQIWDTAGQERYR------TITTAYYRGAMGFILMYDITNEESFNSVQDWITQI---KTY  122 (193)
T ss_pred             ---------------ccEEEEEEEecccchhhh------HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHh---eee
Confidence                           346799999999998862      23444555566667777777777777766665444   445


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+|+|+||||+.+...+.  .+.              +..|++++|         .+++++|||.+.||+.+|+.
T Consensus       123 sw~naqvilvgnKCDmd~eRvis--~e~--------------g~~l~~~LG---------fefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen  123 SWDNAQVILVGNKCDMDSERVIS--HER--------------GRQLADQLG---------FEFFETSAKENINVKQVFER  177 (193)
T ss_pred             eccCceEEEEecccCCccceeee--HHH--------------HHHHHHHhC---------hHHhhhcccccccHHHHHHH
Confidence            56789999999999998754321  111              233444443         35677999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          308 VEESAQEFME  317 (324)
Q Consensus       308 i~~~~~~~~~  317 (324)
                      +...+-+...
T Consensus       178 lv~~Ic~kms  187 (193)
T KOG0093|consen  178 LVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHhh
Confidence            9998866543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.79  E-value=2.1e-18  Score=146.47  Aligned_cols=106  Identities=20%  Similarity=0.192  Sum_probs=67.1

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeeccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTD  242 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D  242 (324)
                      .+.++.|+||||+.++..      .+...+  ..+|++++|||+..+...++.     ..+..+...++| +|+|+||+|
T Consensus        63 ~~~~i~~iDtPG~~~~~~------~~~~~~--~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~~~iIvviNK~D  129 (195)
T cd01884          63 ANRHYAHVDCPGHADYIK------NMITGA--AQMDGAILVVSATDGPMPQTR-----EHLLLARQVGVPYIVVFLNKAD  129 (195)
T ss_pred             CCeEEEEEECcCHHHHHH------HHHHHh--hhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCcEEEEEeCCC
Confidence            356889999999765411      111111  347999999999988766542     223455567787 678999999


Q ss_pred             cCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCCh
Q 020549          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv  301 (324)
                      ++......+ ..+++..+...+                   .+ ...++++|+||++|.|+
T Consensus       130 ~~~~~~~~~~~~~~i~~~l~~~-------------------g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         130 MVDDEELLELVEMEVRELLSKY-------------------GFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHh-------------------cccccCCeEEEeeCccccCC
Confidence            975443222 222333222211                   11 13489999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04118 Rab24 Rab24 subfamily

Probab=99.79  E-value=1.6e-18  Score=147.14  Aligned_cols=162  Identities=19%  Similarity=0.278  Sum_probs=94.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+|+++|++|||||||+++|++..+.. .+..++ +.       .+..    . .                 +..     
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~-~~-------~~~~----~-~-----------------~~~-----   45 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTI-GA-------AFVA----K-R-----------------MVV-----   45 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccce-ee-------EEEE----E-E-----------------EEE-----
Confidence            379999999999999999999876653 111111 00       0000    0 0                 000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~  226 (324)
                                   .+....+.||||||+.++..       +...+ -..+|++++|+|......  ....|...+   ..
T Consensus        46 -------------~~~~~~l~i~D~~G~~~~~~-------~~~~~-~~~~d~iilv~d~~~~~s~~~~~~~~~~i---~~  101 (193)
T cd04118          46 -------------GERVVTLGIWDTAGSERYEA-------MSRIY-YRGAKAAIVCYDLTDSSSFERAKFWVKEL---QN  101 (193)
T ss_pred             -------------CCEEEEEEEEECCCchhhhh-------hhHhh-cCCCCEEEEEEECCCHHHHHHHHHHHHHH---Hh
Confidence                         01234678999999866511       11111 124689999998865321  122332222   21


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHH--HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWM--QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      . ..+.|+++|+||+|+..........  .....+..                     .  ...+++++||++|.|++++
T Consensus       102 ~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l  157 (193)
T cd04118         102 L-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD---------------------E--IKAQHFETSSKTGQNVDEL  157 (193)
T ss_pred             c-CCCCCEEEEEEcccccccccccCccCHHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHH
Confidence            1 2368999999999986532110000  11111100                     1  1367899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      |+.|.+.+..
T Consensus       158 ~~~i~~~~~~  167 (193)
T cd04118         158 FQKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHHH
Confidence            9999987754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=7e-19  Score=137.31  Aligned_cols=165  Identities=16%  Similarity=0.286  Sum_probs=112.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ..-+++.++|+.|.|||.|+.+++..++.....-++              .++...+                 |     
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi--------------GveFgSr-----------------I-----   50 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI--------------GVEFGSR-----------------I-----   50 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhccccccee--------------eeeecce-----------------e-----
Confidence            345789999999999999999999998875332211              1110100                 0     


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                  +....+.++++||||+||++|.      .....+.+.+...++||.+.++++++....|   +..++.
T Consensus        51 ------------inVGgK~vKLQIWDTAGQErFR------SVtRsYYRGAAGAlLVYD~TsrdsfnaLtnW---L~DaR~  109 (214)
T KOG0086|consen   51 ------------VNVGGKTVKLQIWDTAGQERFR------SVTRSYYRGAAGALLVYDITSRDSFNALTNW---LTDART  109 (214)
T ss_pred             ------------eeecCcEEEEEEeecccHHHHH------HHHHHHhccccceEEEEeccchhhHHHHHHH---HHHHHh
Confidence                        0111346789999999999982      1333444555556889999999999888878   445578


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      +...++.+|+++||.||.....+. +.+ -.              .++++         ....+.++||++|+||++.|-
T Consensus       110 lAs~nIvviL~GnKkDL~~~R~Vt-flE-As--------------~FaqE---------nel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen  110 LASPNIVVILCGNKKDLDPEREVT-FLE-AS--------------RFAQE---------NELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             hCCCcEEEEEeCChhhcChhhhhh-HHH-HH--------------hhhcc---------cceeeeeecccccccHHHHHH
Confidence            888899999999999998765331 111 01              01111         124678899999999999998


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      ...+.+.
T Consensus       165 ~c~~tIl  171 (214)
T KOG0086|consen  165 KCARTIL  171 (214)
T ss_pred             HHHHHHH
Confidence            8777654

>cd01892 Miro2 Miro2 subfamily

Probab=99.79  E-value=1.1e-18  Score=145.13  Aligned_cols=163  Identities=14%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC-CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ++.++|+++|.+|||||||+++|++..+. ..+.+++.      ..+...                        .+... 
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~------~~~~~~------------------------~~~~~-   50 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK------PRYAVN------------------------TVEVY-   50 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC------cceEEE------------------------EEEEC-
Confidence            45688999999999999999999998775 33322210      000000                        00000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       +....+.+||++|+.++..  ...    .++  ..+|++++|+|..+..   . +......+.
T Consensus        51 -----------------~~~~~l~~~d~~g~~~~~~--~~~----~~~--~~~d~~llv~d~~~~~---s-~~~~~~~~~  101 (169)
T cd01892          51 -----------------GQEKYLILREVGEDEVAIL--LND----AEL--AACDVACLVYDSSDPK---S-FSYCAEVYK  101 (169)
T ss_pred             -----------------CeEEEEEEEecCCcccccc--cch----hhh--hcCCEEEEEEeCCCHH---H-HHHHHHHHH
Confidence                             1234678999999877521  100    111  3469999999986531   1 111111112


Q ss_pred             HH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .+ ...++|+++|+||+|+.+....  .......+.                      ..+...+++++||++|.|++++
T Consensus       102 ~~~~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~v~~l  157 (169)
T cd01892         102 KYFMLGEIPCLFVAAKADLDEQQQR--YEVQPDEFC----------------------RKLGLPPPLHFSSKLGDSSNEL  157 (169)
T ss_pred             HhccCCCCeEEEEEEcccccccccc--cccCHHHHH----------------------HHcCCCCCEEEEeccCccHHHH
Confidence            22 1247999999999998654211  001111111                      1122235689999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      |+.|.+.+.
T Consensus       158 f~~l~~~~~  166 (169)
T cd01892         158 FTKLATAAQ  166 (169)
T ss_pred             HHHHHHHhh
Confidence            999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=1.2e-18  Score=157.62  Aligned_cols=164  Identities=21%  Similarity=0.272  Sum_probs=106.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ..-+.|+++|+.|||||||+|+|++...... ...+.+.||+.           |                   .+.   
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~-d~LFATLdptt-----------R-------------------~~~---  235 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA-DQLFATLDPTT-----------R-------------------RIE---  235 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeecc-ccccccccCce-----------e-------------------EEE---
Confidence            3557899999999999999999996533211 11111111111           0                   000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-----cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                     ...+..+++-||.|+.+-     +...+...|++     ..+|++++|||+++. ..........
T Consensus       236 ---------------l~~g~~vlLtDTVGFI~~-----LP~~LV~AFksTLEE~~~aDlllhVVDaSdp-~~~~~~~~v~  294 (411)
T COG2262         236 ---------------LGDGRKVLLTDTVGFIRD-----LPHPLVEAFKSTLEEVKEADLLLHVVDASDP-EILEKLEAVE  294 (411)
T ss_pred             ---------------eCCCceEEEecCccCccc-----CChHHHHHHHHHHHHhhcCCEEEEEeecCCh-hHHHHHHHHH
Confidence                           022578999999998663     33344444443     358999999999886 3333333334


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                      ..+..+...++|+|+|.||+|++.....   ...+.                         ...  ...+++||++|.|+
T Consensus       295 ~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~-------------------------~~~--~~~v~iSA~~~~gl  344 (411)
T COG2262         295 DVLAEIGADEIPIILVLNKIDLLEDEEI---LAELE-------------------------RGS--PNPVFISAKTGEGL  344 (411)
T ss_pred             HHHHHcCCCCCCEEEEEecccccCchhh---hhhhh-------------------------hcC--CCeEEEEeccCcCH
Confidence            3344444467899999999999876531   11111                         111  15899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQEF  315 (324)
Q Consensus       302 ~~l~~~i~~~~~~~  315 (324)
                      +.|++.|.+.++..
T Consensus       345 ~~L~~~i~~~l~~~  358 (411)
T COG2262         345 DLLRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999999988753

>cd04111 Rab39 Rab39 subfamily

Probab=99.79  E-value=8.7e-19  Score=151.02  Aligned_cols=165  Identities=19%  Similarity=0.196  Sum_probs=97.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.+++     +....  ...+.+.                            
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti-----~~d~~--~~~i~~~----------------------------   47 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV-----GVDFF--SRLIEIE----------------------------   47 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee-----ceEEE--EEEEEEC----------------------------
Confidence            689999999999999999999887654322211     00000  0000000                            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                      .            .....+.||||||+.++..      .....+  ..+|++++|+|..+.  +.....|...+.  ...
T Consensus        48 ~------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~Sf~~l~~~~~~i~--~~~  105 (211)
T cd04111          48 P------------GVRIKLQLWDTAGQERFRS------ITRSYY--RNSVGVLLVFDITNRESFEHVHDWLEEAR--SHI  105 (211)
T ss_pred             C------------CCEEEEEEEeCCcchhHHH------HHHHHh--cCCcEEEEEEECCCHHHHHHHHHHHHHHH--Hhc
Confidence            0            1235788999999876411      111122  335888888887643  222223322211  111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      .....|+++|+||+|+.......  .+....+.                      ... ..+++++||++|.||+++|+.
T Consensus       106 ~~~~~~iilvgNK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111         106 QPHRPVFILVGHKCDLESQRQVT--REEAEKLA----------------------KDL-GMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             CCCCCeEEEEEEccccccccccC--HHHHHHHH----------------------HHh-CCEEEEEeCCCCCCHHHHHHH
Confidence            22357789999999997642210  01111111                      111 378999999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          308 VEESAQEFM  316 (324)
Q Consensus       308 i~~~~~~~~  316 (324)
                      |.+.+....
T Consensus       161 l~~~~~~~~  169 (211)
T cd04111         161 LTQEIYERI  169 (211)
T ss_pred             HHHHHHHHh
Confidence            999876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.79  E-value=1e-18  Score=146.57  Aligned_cols=161  Identities=17%  Similarity=0.123  Sum_probs=92.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|++|||||||+++|++..+.....+++       . ..+..                       .+...     
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~-------~-~~~~~-----------------------~~~~~-----   45 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI-------E-NTFSK-----------------------IIRYK-----   45 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcch-------h-hhEEE-----------------------EEEEC-----
Confidence            479999999999999999999876543221111       0 00000                       00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||+.++..   ...   ..+  ..++.+++++|.....  .....|...  .++..
T Consensus        46 -------------~~~~~~~l~D~~g~~~~~~---~~~---~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~  102 (180)
T cd04137          46 -------------GQDYHLEIVDTAGQDEYSI---LPQ---KYS--IGIHGYILVYSVTSRKSFEVVKVIYDK--ILDML  102 (180)
T ss_pred             -------------CEEEEEEEEECCChHhhHH---HHH---HHH--hhCCEEEEEEECCCHHHHHHHHHHHHH--HHHhc
Confidence                         1135678999999876521   111   111  2246677777765432  222222111  11222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+|+|+||+|+.......  ......+.+                     .  ...+++++||++|.|+++++..
T Consensus       103 ~~~~~p~ilv~NK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l~~~  157 (180)
T cd04137         103 GKESVPIVLVGNKSDLHTQRQVS--TEEGKELAE---------------------S--WGAAFLESSARENENVEEAFEL  157 (180)
T ss_pred             CCCCCCEEEEEEchhhhhcCccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHH
Confidence            33578999999999987532110  001111110                     1  1367999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+..
T Consensus       158 l~~~~~~  164 (180)
T cd04137         158 LIEEIEK  164 (180)
T ss_pred             HHHHHHH
Confidence            9988764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.79  E-value=6.3e-18  Score=143.69  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=102.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+..++|+++|.+|||||||+++|++..+...           +...++++ ..+.                     .  
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~t-~~~~---------------------~--   65 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLAR-----------TSKTPGRT-QLIN---------------------F--   65 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc-----------ccCCCCce-eEEE---------------------E--
Confidence            44668899999999999999999998643211           11111111 0000                     0  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhcc-CCcEEEEEEcCCCCCCchhHHHhH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~~-~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                        +              ....++.||||||+.....    +......+...+... ..+++++++|+..+......+   
T Consensus        66 --~--------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~---  126 (196)
T PRK00454         66 --F--------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ---  126 (196)
T ss_pred             --E--------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH---
Confidence              0              0135789999999643210    011111222233322 346888899987765544321   


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                        ....+...++|+++|+||+|+.+..........+.....                     ..  ..+++++||++|.|
T Consensus       127 --i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~---------------------~~--~~~~~~~Sa~~~~g  181 (196)
T PRK00454        127 --MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALK---------------------FG--DDEVILFSSLKKQG  181 (196)
T ss_pred             --HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHH---------------------hc--CCceEEEEcCCCCC
Confidence              112344568999999999999876543333222221110                     11  46899999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQE  314 (324)
Q Consensus       301 v~~l~~~i~~~~~~  314 (324)
                      ++++++.|.+.+.+
T Consensus       182 i~~l~~~i~~~~~~  195 (196)
T PRK00454        182 IDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887653

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.78  E-value=1.8e-18  Score=144.60  Aligned_cols=158  Identities=18%  Similarity=0.277  Sum_probs=91.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|++|+|||||+++|++..+.. ..       ++..     .+.  .                  .+.     
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~-------~t~~-----~~~--~------------------~~~-----   55 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TS-------PTIG-----SNV--E------------------EIV-----   55 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cC-------Cccc-----cce--E------------------EEE-----
Confidence            35789999999999999999998765432 11       1110     000  0                  000     


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~  226 (324)
                                     .....+.||||||+.++..      .....+  ..+|+++||+|+++...-. .....+. .+..
T Consensus        56 ---------------~~~~~~~l~D~~G~~~~~~------~~~~~~--~~~d~vi~V~D~s~~~~~~-~~~~~l~~~~~~  111 (174)
T cd04153          56 ---------------YKNIRFLMWDIGGQESLRS------SWNTYY--TNTDAVILVIDSTDRERLP-LTKEELYKMLAH  111 (174)
T ss_pred             ---------------ECCeEEEEEECCCCHHHHH------HHHHHh--hcCCEEEEEEECCCHHHHH-HHHHHHHHHHhc
Confidence                           1256789999999866411      111122  2468999999987642111 1111111 1111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ....++|+++|+||+|+.......+..+.+.                     ..  .. ....+++++||++|.||+++|
T Consensus       112 ~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~---------------------~~--~~~~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153         112 EDLRKAVLLVLANKQDLKGAMTPAEISESLG---------------------LT--SIRDHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             hhhcCCCEEEEEECCCCCCCCCHHHHHHHhC---------------------cc--cccCCceEEEecccCCCCCHHHHH
Confidence            1124689999999999875311111111110                     00  00 013478999999999999999


Q ss_pred             HHHHH
Q 020549          306 KAVEE  310 (324)
Q Consensus       306 ~~i~~  310 (324)
                      +.|.+
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            99864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=8.9e-19  Score=166.86  Aligned_cols=159  Identities=25%  Similarity=0.283  Sum_probs=102.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+|+|++|||||||+|+|++.....            +...++.+    +++..              +.+.       
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~t----~d~~~--------------~~~~-------   43 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------VSDTPGVT----RDRKY--------------GDAE-------   43 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcce------------ecCCCCcc----cCceE--------------EEEE-------
Confidence            48999999999999999999875321            22333332    11110              0000       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                  ..+..+.||||||+....  ......+......  ..+|+++||+|+..+....+..     ....+.
T Consensus        44 ------------~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~  104 (429)
T TIGR03594        44 ------------WGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLR  104 (429)
T ss_pred             ------------ECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHH
Confidence                        225678999999975431  1112222222211  3479999999999877665522     123445


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+...+..   ..++.                          .....+++++||++|.|++++++.+
T Consensus       105 ~~~~piilVvNK~D~~~~~~~---~~~~~--------------------------~lg~~~~~~vSa~~g~gv~~ll~~i  155 (429)
T TIGR03594       105 KSGKPVILVANKIDGKKEDAV---AAEFY--------------------------SLGFGEPIPISAEHGRGIGDLLDAI  155 (429)
T ss_pred             HhCCCEEEEEECccCCccccc---HHHHH--------------------------hcCCCCeEEEeCCcCCChHHHHHHH
Confidence            568999999999998765421   11111                          1234579999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.++.
T Consensus       156 ~~~l~~  161 (429)
T TIGR03594       156 LELLPE  161 (429)
T ss_pred             HHhcCc
Confidence            988754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.78  E-value=1.4e-18  Score=146.65  Aligned_cols=168  Identities=19%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+++|.+|||||||+++|.+..+... .       ++.....                          +...   
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~-------~t~~~~~--------------------------~~~~---   57 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-Q-------PTQHPTS--------------------------EELA---   57 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-C-------Cccccce--------------------------EEEE---
Confidence            3558899999999999999999998754320 0       1110000                          0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~  225 (324)
                                      ..+.++.+|||||+..+.  .    ....++  ..+|.++||+|+++...- ......+. .+.
T Consensus        58 ----------------~~~~~~~~~D~~G~~~~~--~----~~~~~~--~~ad~ii~vvD~~~~~~~-~~~~~~l~~l~~  112 (184)
T smart00178       58 ----------------IGNIKFTTFDLGGHQQAR--R----LWKDYF--PEVNGIVYLVDAYDKERF-AESKRELDALLS  112 (184)
T ss_pred             ----------------ECCEEEEEEECCCCHHHH--H----HHHHHh--CCCCEEEEEEECCcHHHH-HHHHHHHHHHHc
Confidence                            125678999999986641  1    111222  346999999999653211 11111111 111


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+...-...+..+.+. +..           .....+.   .......+++|||++|+|+++++
T Consensus       113 ~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~-l~~-----------~~~~~~~---~~~~~~~i~~~Sa~~~~g~~~~~  177 (184)
T smart00178      113 DEELATVPFLILGNKIDAPYAASEDELRYALG-LTN-----------TTGSKGK---VGVRPLEVFMCSVVRRMGYGEGF  177 (184)
T ss_pred             ChhhcCCCEEEEEeCccccCCCCHHHHHHHcC-CCc-----------ccccccc---cCCceeEEEEeecccCCChHHHH
Confidence            11225789999999999864211111211111 000           0000000   00124579999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      +.|...
T Consensus       178 ~wl~~~  183 (184)
T smart00178      178 KWLSQY  183 (184)
T ss_pred             HHHHhh
Confidence            999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.78  E-value=3.3e-18  Score=170.59  Aligned_cols=165  Identities=20%  Similarity=0.300  Sum_probs=104.1

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...+++.|+|+|++|+|||||+++|.+..+..+....+            +.++                    +...+.
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GI------------T~~i--------------------ga~~v~  333 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGI------------TQHI--------------------GAYQVE  333 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCce------------eeec--------------------cEEEEE
Confidence            35678899999999999999999998765443211000            0000                    000000


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                        ..+..+.||||||+..|..      ...+.  ...+|++++|+|+.++..+++.     ..+
T Consensus       334 ------------------~~~~~ItfiDTPGhe~F~~------m~~rg--a~~aDiaILVVdAddGv~~qT~-----e~i  382 (787)
T PRK05306        334 ------------------TNGGKITFLDTPGHEAFTA------MRARG--AQVTDIVVLVVAADDGVMPQTI-----EAI  382 (787)
T ss_pred             ------------------ECCEEEEEEECCCCccchh------HHHhh--hhhCCEEEEEEECCCCCCHhHH-----HHH
Confidence                              1245789999999887621      11111  1346999999999988766552     223


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+|+|+||+|+...+. ......+..                  .+...+.|....+++++||++|.|+++|
T Consensus       383 ~~a~~~~vPiIVviNKiDl~~a~~-e~V~~eL~~------------------~~~~~e~~g~~vp~vpvSAktG~GI~eL  443 (787)
T PRK05306        383 NHAKAAGVPIIVAINKIDKPGANP-DRVKQELSE------------------YGLVPEEWGGDTIFVPVSAKTGEGIDEL  443 (787)
T ss_pred             HHHHhcCCcEEEEEECccccccCH-HHHHHHHHH------------------hcccHHHhCCCceEEEEeCCCCCCchHH
Confidence            445567899999999999965321 111111110                  0111113334578999999999999999


Q ss_pred             HHHHHHH
Q 020549          305 FKAVEES  311 (324)
Q Consensus       305 ~~~i~~~  311 (324)
                      ++.|...
T Consensus       444 le~I~~~  450 (787)
T PRK05306        444 LEAILLQ  450 (787)
T ss_pred             HHhhhhh
Confidence            9999764

>cd04123 Rab21 Rab21 subfamily

Probab=99.78  E-value=1.9e-18  Score=141.78  Aligned_cols=159  Identities=17%  Similarity=0.247  Sum_probs=93.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|+|||||+++|++..+......++       . .....    .                  .+...     
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~-------~-~~~~~----~------------------~~~~~-----   45 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT-------Q-ASFFQ----K------------------TVNIG-----   45 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc-------c-eeEEE----E------------------EEEEC-----
Confidence            379999999999999999999876653211100       0 00000    0                  00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+..+..       +...+. ..+|++++|+|..+...  ....|   +..+...
T Consensus        46 -------------~~~~~~~~~D~~g~~~~~~-------~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~---~~~i~~~  101 (162)
T cd04123          46 -------------GKRIDLAIWDTAGQERYHA-------LGPIYY-RDADGAILVYDITDADSFQKVKKW---IKELKQM  101 (162)
T ss_pred             -------------CEEEEEEEEECCchHHHHH-------hhHHHh-ccCCEEEEEEECCCHHHHHHHHHH---HHHHHHh
Confidence                         1134688999999866521       111111 34689999999765432  11223   2222223


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+........  +....+.+                     .  .+.+++++||++|.|++++++.
T Consensus       102 ~~~~~piiiv~nK~D~~~~~~~~~--~~~~~~~~---------------------~--~~~~~~~~s~~~~~gi~~~~~~  156 (162)
T cd04123         102 RGNNISLVIVGNKIDLERQRVVSK--SEAEEYAK---------------------S--VGAKHFETSAKTGKGIEELFLS  156 (162)
T ss_pred             CCCCCeEEEEEECcccccccCCCH--HHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHHH
Confidence            334789999999999875432100  11111110                     1  2467899999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       157 l~~~~  161 (162)
T cd04123         157 LAKRM  161 (162)
T ss_pred             HHHHh
Confidence            98764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.78  E-value=2.1e-18  Score=140.71  Aligned_cols=155  Identities=19%  Similarity=0.287  Sum_probs=95.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +.+|+++|++|+|||||+++|.+.....            ....+.++ .+...                 +. ..    
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~------------~~~~~~~~-~~~~~-----------------~~-~~----   45 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAI------------VSDIAGTT-RDVIE-----------------ES-ID----   45 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEe------------ccCCCCCc-cceEE-----------------EE-EE----
Confidence            4679999999999999999999864321            11111111 00000                 00 00    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                    ..+.++.+|||||+.++..... ...+.+.. ....+|++++|+|+..........  .+   .. 
T Consensus        46 --------------~~~~~~~i~DtpG~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~~---~~-  104 (157)
T cd04164          46 --------------IGGIPVRLIDTAGIRETEDEIE-KIGIERAREAIEEADLVLFVIDASRGLDEEDLE--IL---EL-  104 (157)
T ss_pred             --------------eCCEEEEEEECCCcCCCcchHH-HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHH--HH---Hh-
Confidence                          1245789999999876522111 11111111 113578999999998644333211  11   11 


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                       ..+.|+++|+||+|+......      .                          ......+++++||+++.|++++++.
T Consensus       105 -~~~~~vi~v~nK~D~~~~~~~------~--------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~  151 (157)
T cd04164         105 -PADKPIIVVLNKSDLLPDSEL------L--------------------------SLLAGKPIIAISAKTGEGLDELKEA  151 (157)
T ss_pred             -hcCCCEEEEEEchhcCCcccc------c--------------------------cccCCCceEEEECCCCCCHHHHHHH
Confidence             457999999999999865422      0                          1123578999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       152 l~~~~  156 (157)
T cd04164         152 LLELA  156 (157)
T ss_pred             HHHhh
Confidence            88754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.78  E-value=1.5e-18  Score=144.86  Aligned_cols=168  Identities=14%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|+|||||++++.+..+...+.+++..      .+...                         +...     
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~------~~~~~-------------------------~~~~-----   44 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD------NFSVV-------------------------VLVD-----   44 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee------eeeEE-------------------------EEEC-----
Confidence            47999999999999999999887665433322100      00000                         0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||||+.++.....        ..-..+|++++++|..+.  +... ..|...+   ..
T Consensus        45 -------------~~~~~~~i~Dt~G~~~~~~~~~--------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~---~~  100 (173)
T cd04130          45 -------------GKPVRLQLCDTAGQDEFDKLRP--------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI---RK  100 (173)
T ss_pred             -------------CEEEEEEEEECCCChhhccccc--------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHH---Hh
Confidence                         1135678999999877522111        011346889999887653  3222 1232222   11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                       ...+.|+++|+||+|+........   .+   ...    +.+  ....+....+.......+++++||++|.||+++|+
T Consensus       101 -~~~~~piilv~nK~Dl~~~~~~~~---~~---~~~----~~~--~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~  167 (173)
T cd04130         101 -HNPKAPIILVGTQADLRTDVNVLI---QL---ARY----GEK--PVSQSRAKALAEKIGACEYIECSALTQKNLKEVFD  167 (173)
T ss_pred             -hCCCCCEEEEeeChhhccChhHHH---HH---hhc----CCC--CcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence             124689999999999975431100   00   000    000  00000000011112234899999999999999999


Q ss_pred             HHHH
Q 020549          307 AVEE  310 (324)
Q Consensus       307 ~i~~  310 (324)
                      .+..
T Consensus       168 ~~~~  171 (173)
T cd04130         168 TAIL  171 (173)
T ss_pred             HHHh
Confidence            8764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.78  E-value=1.3e-18  Score=142.71  Aligned_cols=114  Identities=15%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ...+.||||||+..+.  ..    ....+  ..+|++++|+|+....  .....+.  ..........+.|+++|+||+|
T Consensus        42 ~~~~~i~D~~G~~~~~--~~----~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~--~~~~~~~~~~~~piiiv~nK~D  111 (158)
T cd00878          42 NVSFTVWDVGGQDKIR--PL----WKHYY--ENTNGIIFVVDSSDRERIEEAKEEL--HKLLNEEELKGVPLLIFANKQD  111 (158)
T ss_pred             CEEEEEEECCCChhhH--HH----HHHHh--ccCCEEEEEEECCCHHHHHHHHHHH--HHHHhCcccCCCcEEEEeeccC
Confidence            4678999999987641  11    11111  2358999999997642  1111111  1111111235789999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      +.......+..+.+...                     . ......+++++||++|.|++++|+.|..
T Consensus       112 ~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         112 LPGALSVSELIEKLGLE---------------------K-ILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CccccCHHHHHHhhChh---------------------h-ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            98644222221111100                     0 0112468999999999999999999864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.78  E-value=2.1e-18  Score=168.76  Aligned_cols=118  Identities=18%  Similarity=0.146  Sum_probs=79.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|||+.++..+++..     .+..+...++| +|+|+||+|+
T Consensus        49 ~~~v~~iDtPGhe~f~~------~~~~g~--~~aD~aILVVDa~~G~~~qT~e-----hl~il~~lgi~~iIVVlNK~Dl  115 (581)
T TIGR00475        49 DYRLGFIDVPGHEKFIS------NAIAGG--GGIDAALLVVDADEGVMTQTGE-----HLAVLDLLGIPHTIVVITKADR  115 (581)
T ss_pred             CEEEEEEECCCHHHHHH------HHHhhh--ccCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCCC
Confidence            35788999999766521      111111  3479999999999887665532     22344556888 9999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ++.+......+++..+.+..                   .+....+++++||++|.|+++++..|...+..
T Consensus       116 v~~~~~~~~~~ei~~~l~~~-------------------~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       116 VNEEEIKRTEMFMKQILNSY-------------------IFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             CCHHHHHHHHHHHHHHHHHh-------------------CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            87654333333333221110                   11125789999999999999999999887754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd00879 Sar1 Sar1 subfamily

Probab=99.78  E-value=1.7e-18  Score=146.56  Aligned_cols=172  Identities=17%  Similarity=0.136  Sum_probs=92.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+++|.+..+.. +.+       +....                          .+.+.   
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~-------T~~~~--------------------------~~~i~---   59 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVP-------TLHPT--------------------------SEELT---   59 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC-------ccCcc--------------------------eEEEE---
Confidence            356889999999999999999999865431 110       01000                          00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~  225 (324)
                                      ..+..+.+|||||+.++.  .    .....+  ..+|.+++|+|..+...- ......+.. +.
T Consensus        60 ----------------~~~~~~~l~D~~G~~~~~--~----~~~~~~--~~ad~iilV~D~~~~~s~-~~~~~~~~~i~~  114 (190)
T cd00879          60 ----------------IGNIKFKTFDLGGHEQAR--R----LWKDYF--PEVDGIVFLVDAADPERF-QESKEELDSLLS  114 (190)
T ss_pred             ----------------ECCEEEEEEECCCCHHHH--H----HHHHHh--ccCCEEEEEEECCcHHHH-HHHHHHHHHHHc
Confidence                            124578899999976641  1    111222  235899999998653111 111111111 11


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|+++|+||+|+.......+....+.    .   .    ..+........+......++++|||++|+|++++|
T Consensus       115 ~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~----~---~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~  183 (190)
T cd00879         115 DEELANVPFLILGNKIDLPGAVSEEELRQALG----L---Y----GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF  183 (190)
T ss_pred             CccccCCCEEEEEeCCCCCCCcCHHHHHHHhC----c---c----cccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence            11235699999999999864321111111110    0   0    00000000000011123578999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      +.|.+.
T Consensus       184 ~~l~~~  189 (190)
T cd00879         184 RWLSQY  189 (190)
T ss_pred             HHHHhh
Confidence            999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04110 Rab35 Rab35 subfamily

Probab=99.78  E-value=1.8e-18  Score=147.81  Aligned_cols=162  Identities=17%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|++|||||||+++|.+..+...+.+++     ++ .+.. ..                       +...   
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~-----~~-~~~~-~~-----------------------~~~~---   51 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-----GV-DFKI-RT-----------------------VEIN---   51 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc-----cc-eeEE-EE-----------------------EEEC---
Confidence            35789999999999999999999876653322211     00 0000 00                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+..+..      ....++  ..++++++|+|..+..  .....|...+   .
T Consensus        52 ---------------~~~~~l~l~D~~G~~~~~~------~~~~~~--~~a~~iilv~D~~~~~s~~~~~~~~~~i---~  105 (199)
T cd04110          52 ---------------GERVKLQIWDTAGQERFRT------ITSTYY--RGTHGVIVVYDVTNGESFVNVKRWLQEI---E  105 (199)
T ss_pred             ---------------CEEEEEEEEeCCCchhHHH------HHHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence                           1134688999999876521      111122  2357899999986532  2222232211   1


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      . .....|+++|+||+|+.......  ......+.+                     .  ...+++++||++|.||+++|
T Consensus       106 ~-~~~~~piivVgNK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~gi~~lf  159 (199)
T cd04110         106 Q-NCDDVCKVLVGNKNDDPERKVVE--TEDAYKFAG---------------------Q--MGISLFETSAKENINVEEMF  159 (199)
T ss_pred             H-hCCCCCEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEECCCCcCHHHHH
Confidence            1 12468999999999997543210  011111110                     1  13679999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+..
T Consensus       160 ~~l~~~~~~  168 (199)
T cd04110         160 NCITELVLR  168 (199)
T ss_pred             HHHHHHHHH
Confidence            999998754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.77  E-value=1.2e-18  Score=144.30  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=90.7

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChH
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK  151 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  151 (324)
                      |+++|++|||||||+++|.+..+...+.+++.     ..   .. .+                                 
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g-----~~---~~-~i---------------------------------   39 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG-----FN---SV-AI---------------------------------   39 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCC-----cc---eE-EE---------------------------------
Confidence            79999999999999999998765433222110     00   00 00                                 


Q ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh-hc
Q 020549          152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KT  230 (324)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~  230 (324)
                                ......+.||||||+.++..      ....++  ..+|+++||+|..+...- ..+...+.  ..+. ..
T Consensus        40 ----------~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~ii~V~D~t~~~s~-~~~~~~l~--~~~~~~~   98 (164)
T cd04162          40 ----------PTQDAIMELLEIGGSQNLRK------YWKRYL--SGSQGLIFVVDSADSERL-PLARQELH--QLLQHPP   98 (164)
T ss_pred             ----------eeCCeEEEEEECCCCcchhH------HHHHHH--hhCCEEEEEEECCCHHHH-HHHHHHHH--HHHhCCC
Confidence                      02356789999999877521      111122  236899999998664311 11111121  1111 25


Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc------CCChHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS------GAGIEAY  304 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~------g~gv~~l  304 (324)
                      ++|+++|+||+|+.......++...+.            ...++.         .....++++||++      ++||+++
T Consensus        99 ~~piilv~NK~Dl~~~~~~~~i~~~~~------------~~~~~~---------~~~~~~~~~Sa~~~~s~~~~~~v~~~  157 (164)
T cd04162          99 DLPLVVLANKQDLPAARSVQEIHKELE------------LEPIAR---------GRRWILQGTSLDDDGSPSRMEAVKDL  157 (164)
T ss_pred             CCcEEEEEeCcCCcCCCCHHHHHHHhC------------ChhhcC---------CCceEEEEeeecCCCChhHHHHHHHH
Confidence            799999999999876532222111110            000000         0135577788887      9999999


Q ss_pred             HHHHHH
Q 020549          305 FKAVEE  310 (324)
Q Consensus       305 ~~~i~~  310 (324)
                      |+.++.
T Consensus       158 ~~~~~~  163 (164)
T cd04162         158 LSQLIN  163 (164)
T ss_pred             HHHHhc
Confidence            998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.77  E-value=1.4e-18  Score=141.81  Aligned_cols=156  Identities=19%  Similarity=0.198  Sum_probs=90.7

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChH
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK  151 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  151 (324)
                      |+++|++|||||||+++|.+..+.....+++              .++..                   ...        
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~~-------------------~~~--------   40 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--------------GFNMR-------------------KVT--------   40 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--------------CcceE-------------------EEE--------
Confidence            7999999999999999999886653221110              00000                   000        


Q ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHHHhhc
Q 020549          152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKT  230 (324)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~~~~~  230 (324)
                                 .....+.+|||||+.++.  .    .....+  ..+|++++|+|+........ ....+. ........
T Consensus        41 -----------~~~~~~~~~D~~g~~~~~--~----~~~~~~--~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~  100 (159)
T cd04159          41 -----------KGNVTLKVWDLGGQPRFR--S----MWERYC--RGVNAIVYVVDAADRTALEA-AKNELHDLLEKPSLE  100 (159)
T ss_pred             -----------ECCEEEEEEECCCCHhHH--H----HHHHHH--hcCCEEEEEEECCCHHHHHH-HHHHHHHHHcChhhc
Confidence                       124578899999986641  1    111222  33689999999865321111 001111 01111125


Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      ++|+++|+||+|+............+. +.                  .   ......+++++||++|.|++++++.|.+
T Consensus       101 ~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~------------------~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         101 GIPLLVLGNKNDLPGALSVDELIEQMN-LK------------------S---ITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             CCCEEEEEeCccccCCcCHHHHHHHhC-cc------------------c---ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            789999999999876532222211110 00                  0   0012357899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.77  E-value=1e-18  Score=144.47  Aligned_cols=113  Identities=14%  Similarity=0.194  Sum_probs=67.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHHh--hcCCCeEEEeec
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILY--KTRLPLVLAFNK  240 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK  240 (324)
                      ...+.||||||+.+++..     .....++  .+|++++++|....  +.....|...+   ....  ..+.|+++|+||
T Consensus        46 ~~~~~i~D~~g~~~~~~~-----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~~~piilv~nK  115 (165)
T cd04146          46 QVSLEILDTAGQQQADTE-----QLERSIR--WADGFVLVYSITDRSSFDEISQLKQLI---REIKKRDREIPVILVGNK  115 (165)
T ss_pred             EEEEEEEECCCCcccccc-----hHHHHHH--hCCEEEEEEECCCHHHHHHHHHHHHHH---HHHhcCCCCCCEEEEEEC
Confidence            346789999998752111     1112222  35888888888654  22223343322   2222  347999999999


Q ss_pred             cccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC-CChHHHHHHHHHHH
Q 020549          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG-AGIEAYFKAVEESA  312 (324)
Q Consensus       241 ~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g-~gv~~l~~~i~~~~  312 (324)
                      +|+.....+.  .+....+.                      .- ...+++++||++| .||+++|..|++.+
T Consensus       116 ~Dl~~~~~v~--~~~~~~~~----------------------~~-~~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         116 ADLLHYRQVS--TEEGEKLA----------------------SE-LGCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             CchHHhCccC--HHHHHHHH----------------------HH-cCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            9986432110  00111111                      11 1368999999999 59999999998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.77  E-value=3.7e-18  Score=168.80  Aligned_cols=170  Identities=18%  Similarity=0.314  Sum_probs=104.8

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...+++.|+|+|++|+|||||+++|.+..+.......+            +.++.                    .....
T Consensus       240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~Gi------------Tq~i~--------------------~~~v~  287 (742)
T CHL00189        240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGI------------TQKIG--------------------AYEVE  287 (742)
T ss_pred             hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcc------------ccccc--------------------eEEEE
Confidence            35677899999999999999999998876543211100            00000                    00000


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                         +..           ......+.||||||+..|..      .+.+.+  ..+|++++|||+.++..+++.     ..+
T Consensus       288 ---~~~-----------~~~~~kItfiDTPGhe~F~~------mr~rg~--~~aDiaILVVDA~dGv~~QT~-----E~I  340 (742)
T CHL00189        288 ---FEY-----------KDENQKIVFLDTPGHEAFSS------MRSRGA--NVTDIAILIIAADDGVKPQTI-----EAI  340 (742)
T ss_pred             ---EEe-----------cCCceEEEEEECCcHHHHHH------HHHHHH--HHCCEEEEEEECcCCCChhhH-----HHH
Confidence               000           01246899999999876521      111122  346999999999888766542     223


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+...++|+|+|+||+|+..... ....+.+..                  .+...+.+....+++++||++|.|+++|
T Consensus       341 ~~~k~~~iPiIVViNKiDl~~~~~-e~v~~eL~~------------------~~ll~e~~g~~vpvv~VSAktG~GIdeL  401 (742)
T CHL00189        341 NYIQAANVPIIVAINKIDKANANT-ERIKQQLAK------------------YNLIPEKWGGDTPMIPISASQGTNIDKL  401 (742)
T ss_pred             HHHHhcCceEEEEEECCCccccCH-HHHHHHHHH------------------hccchHhhCCCceEEEEECCCCCCHHHH
Confidence            445567899999999999975321 111111110                  0000112223478999999999999999


Q ss_pred             HHHHHHHH
Q 020549          305 FKAVEESA  312 (324)
Q Consensus       305 ~~~i~~~~  312 (324)
                      ++.|....
T Consensus       402 le~I~~l~  409 (742)
T CHL00189        402 LETILLLA  409 (742)
T ss_pred             HHhhhhhh
Confidence            99998764

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.77  E-value=5.5e-18  Score=133.86  Aligned_cols=165  Identities=16%  Similarity=0.213  Sum_probs=111.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++.++||++-+|||+|++.++...++.-..+       ++       .+|...+.        +.+.+            
T Consensus         9 frlivigdstvgkssll~~ft~gkfaelsdp-------tv-------gvdffarl--------ie~~p------------   54 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDP-------TV-------GVDFFARL--------IELRP------------   54 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCcccccCCC-------cc-------chHHHHHH--------HhcCC------------
Confidence            5789999999999999999999988753322       21       11111110        00110            


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   +..+++++|||+||++|.      .+...+.+.+..-++||.+.++++++....|..+-  ......
T Consensus        55 -------------g~riklqlwdtagqerfr------sitksyyrnsvgvllvyditnr~sfehv~~w~~ea--~m~~q~  113 (213)
T KOG0091|consen   55 -------------GYRIKLQLWDTAGQERFR------SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEA--AMATQG  113 (213)
T ss_pred             -------------CcEEEEEEeeccchHHHH------HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHH--HHhcCC
Confidence                         346789999999999982      24444556666678899999999999888785332  122222


Q ss_pred             cCCCe-EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          230 TRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       230 ~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+++ .+|+.|+||.+...+  ..++-+.+++                       ..++.+|++||++|.||++.|..|
T Consensus       114 P~k~VFlLVGhKsDL~SqRqV--t~EEaEklAa-----------------------~hgM~FVETSak~g~NVeEAF~ml  168 (213)
T KOG0091|consen  114 PDKVVFLLVGHKSDLQSQRQV--TAEEAEKLAA-----------------------SHGMAFVETSAKNGCNVEEAFDML  168 (213)
T ss_pred             CCeeEEEEeccccchhhhccc--cHHHHHHHHH-----------------------hcCceEEEecccCCCcHHHHHHHH
Confidence            44454 669999999976543  1222222222                       236789999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.+-.
T Consensus       169 aqeIf~  174 (213)
T KOG0091|consen  169 AQEIFQ  174 (213)
T ss_pred             HHHHHH
Confidence            887643

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.77  E-value=2.4e-18  Score=143.10  Aligned_cols=161  Identities=19%  Similarity=0.241  Sum_probs=95.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|++..+......++     +..   +..    .                  .+...    
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~----   47 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI-----GVD---FRE----R------------------TVEID----   47 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce-----eEE---EEE----E------------------EEEEC----
Confidence            3689999999999999999999876654322211     000   000    0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++.  ..    +...+ ...+|++++|+|.....  .....|...+.  ..
T Consensus        48 --------------~~~~~~~i~Dt~G~~~~~--~~----~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--~~  104 (170)
T cd04115          48 --------------GERIKVQLWDTAGQERFR--KS----MVQHY-YRNVHAVVFVYDVTNMASFHSLPSWIEECE--QH  104 (170)
T ss_pred             --------------CeEEEEEEEeCCChHHHH--Hh----hHHHh-hcCCCEEEEEEECCCHHHHHhHHHHHHHHH--Hh
Confidence                          124578899999987652  11    11111 13358889999886532  22233432221  11


Q ss_pred             HhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc---CCChH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS---GAGIE  302 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~---g~gv~  302 (324)
                      ....++|+++|+||+|+...... .+....+.                         +. ...+++++||++   +.|++
T Consensus       105 ~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-------------------------~~-~~~~~~e~Sa~~~~~~~~i~  158 (170)
T cd04115         105 SLPNEVPRILVGNKCDLREQIQVPTDLAQRFA-------------------------DA-HSMPLFETSAKDPSENDHVE  158 (170)
T ss_pred             cCCCCCCEEEEEECccchhhcCCCHHHHHHHH-------------------------HH-cCCcEEEEeccCCcCCCCHH
Confidence            12356999999999998754321 11111111                         11 237899999999   89999


Q ss_pred             HHHHHHHHHH
Q 020549          303 AYFKAVEESA  312 (324)
Q Consensus       303 ~l~~~i~~~~  312 (324)
                      ++|..+.+.+
T Consensus       159 ~~f~~l~~~~  168 (170)
T cd04115         159 AIFMTLAHKL  168 (170)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd00154 Rab Rab family

Probab=99.77  E-value=5.7e-18  Score=137.99  Aligned_cols=158  Identities=19%  Similarity=0.263  Sum_probs=92.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+......+.     ......                           ....   . 
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~-----~~~~~~---------------------------~~~~---~-   44 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTI-----GVDFKS---------------------------KTIE---I-   44 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCce-----eeeeEE---------------------------EEEE---E-
Confidence            369999999999999999999887664321110     000000                           0000   0 


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                       .           .....+.+||+||+..+..      .....+  ..+|++++++|+.+.. .......++..+.....
T Consensus        45 -~-----------~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~  103 (159)
T cd00154          45 -D-----------GKTVKLQIWDTAGQERFRS------ITPSYY--RGAHGAILVYDITNRE-SFENLDKWLKELKEYAP  103 (159)
T ss_pred             -C-----------CEEEEEEEEecCChHHHHH------HHHHHh--cCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC
Confidence             0           1245788999999755411      111122  3368999999987621 11112112222222222


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .+.|+++|+||+|+..+...  ..+....+..                     .  ...+++++||++|.|+++++..|.
T Consensus       104 ~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~--~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         104 ENIPIILVGNKIDLEDQRQV--STEEAQQFAK---------------------E--NGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             CCCcEEEEEEcccccccccc--cHHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHHHHHHh
Confidence            46999999999999732211  1111111110                     1  247899999999999999999885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.77  E-value=1.4e-17  Score=145.69  Aligned_cols=135  Identities=19%  Similarity=0.303  Sum_probs=82.8

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +.+.++.||||||+.+|..      .....+  ..+|.+++|+|+..+...+.     ...+..+...++|+++|+||+|
T Consensus        61 ~~~~~i~liDTPG~~~f~~------~~~~~l--~~aD~~IlVvd~~~g~~~~~-----~~~~~~~~~~~~P~iivvNK~D  127 (237)
T cd04168          61 WEDTKVNLIDTPGHMDFIA------EVERSL--SVLDGAILVISAVEGVQAQT-----RILWRLLRKLNIPTIIFVNKID  127 (237)
T ss_pred             ECCEEEEEEeCCCccchHH------HHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcc
Confidence            3467899999999987622      122222  23589999999998875432     1112344456899999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcC------cc----------chhhHHHHHH----HhHHHHh-----------------
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSD------HS----------YTSTLTNSLS----LALDEFY-----------------  285 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~------~~----------~~~~l~~~~~----~~~~~~~-----------------  285 (324)
                      +...+. .+.   +..+.+.+...      |.          ....+.+.+.    .+++.|+                 
T Consensus       128 ~~~a~~-~~~---~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~  203 (237)
T cd04168         128 RAGADL-EKV---YQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSAR  203 (237)
T ss_pred             ccCCCH-HHH---HHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            986431 122   22333333221      10          0122222221    2333443                 


Q ss_pred             ----ccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          286 ----KNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       286 ----~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                          ...|+++.||.++.|+..|++.|.+++|.
T Consensus       204 ~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~  236 (237)
T cd04168         204 IAKRKVFPVYHGSALKGIGIEELLEGITKLFPT  236 (237)
T ss_pred             HHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence                23578888999999999999999998763

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.77  E-value=1.6e-18  Score=142.51  Aligned_cols=151  Identities=15%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|++|||||||+++++...+.....+       ....+  ...+                       ...      
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-------~~~~~--~~~i-----------------------~~~------   43 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-------EGGRF--KKEV-----------------------LVD------   43 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-------Cccce--EEEE-----------------------EEC------
Confidence            699999999999999999988766532111       00000  0000                       000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCC--CCCCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP--RSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~--~~~~~~~~~~~~~~~~~~~~  228 (324)
                                  +....+.||||+|+.+..           +.  ..+|++++|.|..  .++.....|...+   ....
T Consensus        44 ------------~~~~~l~i~D~~g~~~~~-----------~~--~~~~~~ilv~d~~~~~sf~~~~~~~~~i---~~~~   95 (158)
T cd04103          44 ------------GQSHLLLIRDEGGAPDAQ-----------FA--SWVDAVIFVFSLENEASFQTVYNLYHQL---SSYR   95 (158)
T ss_pred             ------------CEEEEEEEEECCCCCchh-----------HH--hcCCEEEEEEECCCHHHHHHHHHHHHHH---HHhc
Confidence                        123568899999986521           11  1246666666654  3444433443322   2222


Q ss_pred             -hcCCCeEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          229 -KTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       229 -~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                       ..+.|+++|+||+|+...  ..+.  .+....              +++        -....++++|||++|.||+++|
T Consensus        96 ~~~~~piilvgnK~Dl~~~~~~~v~--~~~~~~--------------~~~--------~~~~~~~~e~SAk~~~~i~~~f  151 (158)
T cd04103          96 NISEIPLILVGTQDAISESNPRVID--DARARQ--------------LCA--------DMKRCSYYETCATYGLNVERVF  151 (158)
T ss_pred             CCCCCCEEEEeeHHHhhhcCCcccC--HHHHHH--------------HHH--------HhCCCcEEEEecCCCCCHHHHH
Confidence             246899999999998531  1110  001111              111        1124689999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      ..+.+.
T Consensus       152 ~~~~~~  157 (158)
T cd04103         152 QEAAQK  157 (158)
T ss_pred             HHHHhh
Confidence            998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03108 Rab family protein; Provisional

Probab=99.77  E-value=3.6e-18  Score=147.08  Aligned_cols=163  Identities=19%  Similarity=0.193  Sum_probs=96.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+++|++..+...+.+++     .+.   +..    .                  .+...   
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti-----~~~---~~~----~------------------~i~~~---   51 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----GVE---FGA----R------------------MITID---   51 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-----cce---EEE----E------------------EEEEC---
Confidence            35789999999999999999999876654322111     000   000    0                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.+|||||++++..      .....+  ..+|.+|+|+|.....  .....|..   .+.
T Consensus        52 ---------------~~~i~l~l~Dt~G~~~~~~------~~~~~~--~~ad~~vlv~D~~~~~s~~~l~~~~~---~~~  105 (210)
T PLN03108         52 ---------------NKPIKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNHLASWLE---DAR  105 (210)
T ss_pred             ---------------CEEEEEEEEeCCCcHHHHH------HHHHHh--ccCCEEEEEEECCcHHHHHHHHHHHH---HHH
Confidence                           1134678999999876521      111122  2357888888876432  22223322   122


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .......|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.||+++|
T Consensus       106 ~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~~~v~e~f  160 (210)
T PLN03108        106 QHANANMTIMLIGNKCDLAHRRAVS--TEEGEQFAK---------------------E--HGLIFMEASAKTAQNVEEAF  160 (210)
T ss_pred             HhcCCCCcEEEEEECccCccccCCC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHH
Confidence            2233578999999999997542110  011111111                     1  14689999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      ..+++.+..
T Consensus       161 ~~l~~~~~~  169 (210)
T PLN03108        161 IKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHH
Confidence            999887754

>cd04155 Arl3 Arl3 subfamily

Probab=99.77  E-value=2.8e-18  Score=142.85  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=91.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||+++|.+..+....        ++.     +  +..                   ..+.    
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~--------~t~-----g--~~~-------------------~~i~----   54 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHIT--------PTQ-----G--FNI-------------------KTVQ----   54 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccC--------CCC-----C--cce-------------------EEEE----
Confidence            4688999999999999999999986442100        000     0  000                   0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     ..+..+.+|||||+.++.      ......+  ..+|.+++|+|+................+...
T Consensus        55 ---------------~~~~~~~~~D~~G~~~~~------~~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~  111 (173)
T cd04155          55 ---------------SDGFKLNVWDIGGQRAIR------PYWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEE  111 (173)
T ss_pred             ---------------ECCEEEEEEECCCCHHHH------HHHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh
Confidence                           124578899999976541      1111222  34689999999875321111000111111222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ...++|+++++||+|+.......++.+.+.                     .  ... ....+++++||++|+|++++|+
T Consensus       112 ~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~---------------------~--~~~~~~~~~~~~~Sa~~~~gi~~~~~  168 (173)
T cd04155         112 KLAGVPVLVFANKQDLATAAPAEEIAEALN---------------------L--HDLRDRTWHIQACSAKTGEGLQEGMN  168 (173)
T ss_pred             hhcCCCEEEEEECCCCccCCCHHHHHHHcC---------------------C--cccCCCeEEEEEeECCCCCCHHHHHH
Confidence            335799999999999976432222221111                     0  000 1123578999999999999999


Q ss_pred             HHHH
Q 020549          307 AVEE  310 (324)
Q Consensus       307 ~i~~  310 (324)
                      +|++
T Consensus       169 ~l~~  172 (173)
T cd04155         169 WVCK  172 (173)
T ss_pred             HHhc
Confidence            9875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.77  E-value=7.5e-18  Score=165.39  Aligned_cols=117  Identities=16%  Similarity=0.128  Sum_probs=78.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl  243 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|||+.+++.+++..     .+..+...++|. |+|+||+|+
T Consensus        50 g~~i~~IDtPGhe~fi~------~m~~g~--~~~D~~lLVVda~eg~~~qT~e-----hl~il~~lgi~~iIVVlNKiDl  116 (614)
T PRK10512         50 GRVLGFIDVPGHEKFLS------NMLAGV--GGIDHALLVVACDDGVMAQTRE-----HLAILQLTGNPMLTVALTKADR  116 (614)
T ss_pred             CcEEEEEECCCHHHHHH------HHHHHh--hcCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCcc
Confidence            34578999999866521      222222  3469999999999988776632     223445567774 799999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ++.+......+++..+...                    ..+...++|++||++|.|+++|++.|......
T Consensus       117 v~~~~~~~v~~ei~~~l~~--------------------~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        117 VDEARIAEVRRQVKAVLRE--------------------YGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCHHHHHHHHHHHHHHHHh--------------------cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            8765443333333322111                    01234789999999999999999999876543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.76  E-value=5.1e-18  Score=160.74  Aligned_cols=160  Identities=22%  Similarity=0.298  Sum_probs=100.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+.+++|+++|+||||||||+|+|++..+..            ++.+++++    ++..              .+.+.  
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------vs~~pgtT----rd~~--------------~~~i~--  247 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAI------------VSDIKGTT----RDVV--------------EGDFE--  247 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcE----EEEE--------------EEEEE--
Confidence            4567899999999999999999999865432            34444443    1110              00000  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhH-HHHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                       ..+..+.||||||+.++.  .... ..+.+... -..+|++++|+|+.........|   +  
T Consensus       248 -----------------~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~---l--  303 (442)
T TIGR00450       248 -----------------LNGILIKLLDTAGIREHA--DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFL---I--  303 (442)
T ss_pred             -----------------ECCEEEEEeeCCCcccch--hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHH---H--
Confidence                             124578899999987642  1111 11111111 13579999999998765433333   2  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                       ..+...++|+|+|+||+|+...+ .    +.+.                         + ..+.+++++||++ .||++
T Consensus       304 -~~~~~~~~piIlV~NK~Dl~~~~-~----~~~~-------------------------~-~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       304 -IDLNKSKKPFILVLNKIDLKINS-L----EFFV-------------------------S-SKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             -HHHhhCCCCEEEEEECccCCCcc-h----hhhh-------------------------h-hcCCceEEEEEec-CCHHH
Confidence             23334578999999999997541 1    1110                         1 1135789999998 69999


Q ss_pred             HHHHHHHHHHH
Q 020549          304 YFKAVEESAQE  314 (324)
Q Consensus       304 l~~~i~~~~~~  314 (324)
                      +++.|.+.+.+
T Consensus       351 ~~~~L~~~i~~  361 (442)
T TIGR00450       351 LVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHH
Confidence            99999887765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04148 RGK RGK subfamily

Probab=99.76  E-value=2.6e-18  Score=149.13  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHh-hcCCCeEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY-KTRLPLVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~  241 (324)
                      ...+.||||||+...         +...+....+|++++|+|..+..  .....|...+   .... ..++|+|+|+||+
T Consensus        49 ~~~l~i~Dt~G~~~~---------~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l---~~~~~~~~~piilV~NK~  116 (221)
T cd04148          49 ESTLVVIDHWEQEMW---------TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQL---RRNRQLEDRPIILVGNKS  116 (221)
T ss_pred             EEEEEEEeCCCcchH---------HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHH---HHhcCCCCCCEEEEEECh
Confidence            457889999998621         11111111568888888886532  2222232211   2211 2479999999999


Q ss_pred             ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      |+.......  .+....+.                      .. ...+++++||++|.||+++|+.|.+.+.
T Consensus       117 Dl~~~~~v~--~~~~~~~a----------------------~~-~~~~~~e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         117 DLARSREVS--VQEGRACA----------------------VV-FDCKFIETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             hccccceec--HHHHHHHH----------------------HH-cCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            997643211  00111111                      11 1467999999999999999999998875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.76  E-value=1.3e-17  Score=141.77  Aligned_cols=110  Identities=17%  Similarity=0.162  Sum_probs=64.0

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ....+.||||||+.++..      .....+  ..+|++++|+|+..+......+  .+   ..+...++|+++|+||+|+
T Consensus        63 ~~~~~~l~DtpG~~~~~~------~~~~~~--~~~d~~ilV~d~~~~~~~~~~~--~~---~~~~~~~~p~iiv~NK~Dl  129 (194)
T cd01891          63 KDTKINIVDTPGHADFGG------EVERVL--SMVDGVLLLVDASEGPMPQTRF--VL---KKALELGLKPIVVINKIDR  129 (194)
T ss_pred             CCEEEEEEECCCcHHHHH------HHHHHH--HhcCEEEEEEECCCCccHHHHH--HH---HHHHHcCCCEEEEEECCCC
Confidence            356889999999887621      122222  2358999999998765433321  12   3334568999999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      ..... ....+++..+...+              +..  ......+++++||++|.|+.+
T Consensus       130 ~~~~~-~~~~~~~~~~~~~~--------------~~~--~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         130 PDARP-EEVVDEVFDLFIEL--------------GAT--EEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             CCCCH-HHHHHHHHHHHHHh--------------CCc--cccCccCEEEeehhccccccc
Confidence            75321 11222222111110              000  001146899999999976643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.76  E-value=1.3e-17  Score=145.72  Aligned_cols=163  Identities=23%  Similarity=0.319  Sum_probs=105.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .-|+++|.||||||||+|+|+..+..             +..|++||                  |.|.-|.+..     
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpk-------------Va~YaFTT------------------L~P~iG~v~y-----  240 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPK-------------VAHYAFTT------------------LRPHIGTVNY-----  240 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCc-------------ccccceee------------------eccccceeec-----
Confidence            34899999999999999999988654             66777776                  2233332221     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh-hhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                   ....++.+-|.||+.+-.. ..-.+..+++.+.+  ++.++||||.+...  .+.+.+..+...++.
T Consensus       241 -------------ddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER--~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~  305 (366)
T KOG1489|consen  241 -------------DDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER--CKGLLFVVDLSGKQLRNPWQQLQLLIEELEL  305 (366)
T ss_pred             -------------cccceeEeccCccccccccccCcccHHHHHHHHh--hceEEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence                         1233588999999887532 22355566666543  57999999998762  222222222222233


Q ss_pred             Hhh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      +..  ...|.++|+||+|+.+.+.  ..   +.+|.+                      ......++++||++++|+++|
T Consensus       306 yek~L~~rp~liVaNKiD~~eae~--~~---l~~L~~----------------------~lq~~~V~pvsA~~~egl~~l  358 (366)
T KOG1489|consen  306 YEKGLADRPALIVANKIDLPEAEK--NL---LSSLAK----------------------RLQNPHVVPVSAKSGEGLEEL  358 (366)
T ss_pred             HhhhhccCceEEEEeccCchhHHH--HH---HHHHHH----------------------HcCCCcEEEeeeccccchHHH
Confidence            322  5689999999999974331  11   222222                      223345999999999999999


Q ss_pred             HHHHHH
Q 020549          305 FKAVEE  310 (324)
Q Consensus       305 ~~~i~~  310 (324)
                      ++.|-+
T Consensus       359 l~~lr~  364 (366)
T KOG1489|consen  359 LNGLRE  364 (366)
T ss_pred             HHHHhh
Confidence            988754

>cd00876 Ras Ras family

Probab=99.76  E-value=4e-18  Score=139.62  Aligned_cols=157  Identities=16%  Similarity=0.198  Sum_probs=90.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+++|++|||||||+++|++..+.....++..        ..+...                       ....      
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~--------~~~~~~-----------------------~~~~------   43 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE--------DSYRKT-----------------------IVVD------   43 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh--------HeEEEE-----------------------EEEC------
Confidence            589999999999999999998765433221110        000000                       0000      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~  228 (324)
                                  .....+.+||+||+.++..      .....+  ..+|++++|+|.....  .....|...+  .....
T Consensus        44 ------------~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~  101 (160)
T cd00876          44 ------------GETYTLDILDTAGQEEFSA------MRDLYI--RQGDGFILVYSITDRESFEEIKGYREQI--LRVKD  101 (160)
T ss_pred             ------------CEEEEEEEEECCChHHHHH------HHHHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHH--HHhcC
Confidence                        1135688999999766421      111122  2358888888875432  1122221111  11112


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ....|+++|+||+|+......  ..+....+..                     .+  ..+++++||++|.|++++++.|
T Consensus       102 ~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---------------------~~--~~~~~~~S~~~~~~i~~l~~~l  156 (160)
T cd00876         102 DEDIPIVLVGNKCDLENERQV--SKEEGKALAK---------------------EW--GCPFIETSAKDNINIDEVFKLL  156 (160)
T ss_pred             CCCCcEEEEEECCccccccee--cHHHHHHHHH---------------------Hc--CCcEEEeccCCCCCHHHHHHHH
Confidence            247999999999999863211  0111111111                     11  2689999999999999999999


Q ss_pred             HHH
Q 020549          309 EES  311 (324)
Q Consensus       309 ~~~  311 (324)
                      .+.
T Consensus       157 ~~~  159 (160)
T cd00876         157 VRE  159 (160)
T ss_pred             Hhh
Confidence            875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=4.4e-17  Score=134.99  Aligned_cols=172  Identities=16%  Similarity=0.157  Sum_probs=113.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....+-|+++|++|||||||||+|+++..-.           -++..|+.|..    .                      
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------rtSktPGrTq~----i----------------------   63 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------RTSKTPGRTQL----I----------------------   63 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCccee-----------ecCCCCCccce----e----------------------
Confidence            3355679999999999999999999975211           14444544410    0                      


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcch----hhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI----FTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                      ++|              .-...+.|+|.||..-.    .........+.+++.. ..-..++++||+++.....+.    
T Consensus        64 Nff--------------~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~----  125 (200)
T COG0218          64 NFF--------------EVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR----  125 (200)
T ss_pred             EEE--------------EecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH----
Confidence            001              11234889999995432    1123345566667654 235788999999999987763    


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccC-ceeeeccccCC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSVGVSSVSGA  299 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~iv~vSA~~g~  299 (324)
                       +.+..+...++|+++|+||+|.++..........+.   +.+..                  ..... .++.+|+.++.
T Consensus       126 -em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~---~~l~~------------------~~~~~~~~~~~ss~~k~  183 (200)
T COG0218         126 -EMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVA---EELKK------------------PPPDDQWVVLFSSLKKK  183 (200)
T ss_pred             -HHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHH---HHhcC------------------CCCccceEEEEeccccc
Confidence             233667788999999999999999765443333332   11100                  01111 28899999999


Q ss_pred             ChHHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQE  314 (324)
Q Consensus       300 gv~~l~~~i~~~~~~  314 (324)
                      |+++|...|.+.+..
T Consensus       184 Gi~~l~~~i~~~~~~  198 (200)
T COG0218         184 GIDELKAKILEWLKE  198 (200)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999887653

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.76  E-value=3.6e-17  Score=159.83  Aligned_cols=127  Identities=25%  Similarity=0.343  Sum_probs=75.3

Q ss_pred             CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCCh
Q 020549          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      .+.||||||+++|...      ..+.  ...+|++++|+|+.+++.++++.     .+..+...++|+++|+||+|+...
T Consensus        72 ~i~~iDTPG~e~f~~~------~~~~--~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~~vpiIvviNK~D~~~~  138 (586)
T PRK04004         72 GLLFIDTPGHEAFTNL------RKRG--GALADIAILVVDINEGFQPQTIE-----AINILKRRKTPFVVAANKIDRIPG  138 (586)
T ss_pred             CEEEEECCChHHHHHH------HHHh--HhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCchh
Confidence            4789999998876221      1111  13479999999999887766532     223445578999999999998632


Q ss_pred             HhH--------------HHHHHhHHHHHHHHhcCccchhhHHHHHHHh------HHHHhccCceeeeccccCCChHHHHH
Q 020549          247 EFA--------------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLA------LDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       247 ~~~--------------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ...              ......+......+      ...|. ..+..      +.++....+++++||++|+|+++|++
T Consensus       139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev------~~~L~-~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~  211 (586)
T PRK04004        139 WKSTEDAPFLESIEKQSQRVQQELEEKLYEL------IGQLS-ELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLM  211 (586)
T ss_pred             hhhhcCchHHHHHhhhhHHHHHHHHHHHHHH------HHHHH-hcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHH
Confidence            110              00011111110000      00010 00100      12344568999999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .+.....
T Consensus       212 ~i~~~~~  218 (586)
T PRK04004        212 VLAGLAQ  218 (586)
T ss_pred             HHHHHHH
Confidence            9876543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.75  E-value=1.5e-17  Score=142.96  Aligned_cols=108  Identities=19%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeeccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTD  242 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D  242 (324)
                      .+.++.||||||+.+|..      .+...+  ..+|++++|+|+..++......     ....+...+. ++|+|+||+|
T Consensus        75 ~~~~~~liDTpG~~~~~~------~~~~~~--~~ad~~llVvD~~~~~~~~~~~-----~~~~~~~~~~~~iIvviNK~D  141 (208)
T cd04166          75 PKRKFIIADTPGHEQYTR------NMVTGA--STADLAILLVDARKGVLEQTRR-----HSYILSLLGIRHVVVAVNKMD  141 (208)
T ss_pred             CCceEEEEECCcHHHHHH------HHHHhh--hhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCCcEEEEEEchh
Confidence            366899999999866521      111211  3479999999998876554421     1122333454 4677999999


Q ss_pred             cCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      +....  ........++.+.+.+                   . +...+++++||++|.|+++.
T Consensus       142 ~~~~~~~~~~~i~~~~~~~~~~~-------------------~-~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         142 LVDYSEEVFEEIVADYLAFAAKL-------------------G-IEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHc-------------------C-CCCceEEEEeCCCCCCCccC
Confidence            97532  1122222222221111                   0 12356999999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.75  E-value=3.1e-18  Score=146.02  Aligned_cols=111  Identities=19%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ...+.||||||++++..      ....++  ..+|++|+|+|.....  .....|...+   ... ..++|+++|+||+|
T Consensus        43 ~~~l~iwDt~G~e~~~~------l~~~~~--~~ad~~ilV~D~t~~~S~~~i~~w~~~i---~~~-~~~~piilvgNK~D  110 (200)
T smart00176       43 PIRFNVWDTAGQEKFGG------LRDGYY--IQGQCAIIMFDVTARVTYKNVPNWHRDL---VRV-CENIPIVLCGNKVD  110 (200)
T ss_pred             EEEEEEEECCCchhhhh------hhHHHh--cCCCEEEEEEECCChHHHHHHHHHHHHH---HHh-CCCCCEEEEEECcc
Confidence            46788999999987621      111122  2357888888876543  2233443333   222 24799999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      +.......+.   . .+.                      . ....++++|||++|.||+++|..|.+.+..
T Consensus       111 l~~~~v~~~~---~-~~~----------------------~-~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      111 VKDRKVKAKS---I-TFH----------------------R-KKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             cccccCCHHH---H-HHH----------------------H-HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            8542211000   0 010                      1 124789999999999999999999988754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=5.8e-17  Score=138.19  Aligned_cols=177  Identities=14%  Similarity=0.059  Sum_probs=99.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +.+|+++|++|||||||+|+|++........+.+.     .  .. ++    ...                ..+..    
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-----~--~~-~t----~~~----------------~~~~~----   48 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-----V--VE-TT----MKR----------------TPYPH----   48 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccC-----c--cc-cc----cCc----------------eeeec----
Confidence            36799999999999999999998655432211110     0  00 00    000                00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    .....+.+|||||+.+...  ... ...+.+.-..+|+++++.+.  .+...+.     ..+..+.
T Consensus        49 --------------~~~~~l~l~DtpG~~~~~~--~~~-~~l~~~~~~~~d~~l~v~~~--~~~~~d~-----~~~~~l~  104 (197)
T cd04104          49 --------------PKFPNVTLWDLPGIGSTAF--PPD-DYLEEMKFSEYDFFIIISST--RFSSNDV-----KLAKAIQ  104 (197)
T ss_pred             --------------CCCCCceEEeCCCCCcccC--CHH-HHHHHhCccCcCEEEEEeCC--CCCHHHH-----HHHHHHH
Confidence                          1134788999999876421  111 11222222345888887654  3333331     1123344


Q ss_pred             hcCCCeEEEeeccccCChHhH---------HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccc--
Q 020549          229 KTRLPLVLAFNKTDVAQHEFA---------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSV--  296 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~--  296 (324)
                      ..+.|+++|+||+|+..+...         .+.++.+.                 +.....+.. .....+++.+|+.  
T Consensus       105 ~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~-----------------~~~~~~~~~~~~~~p~v~~vS~~~~  167 (197)
T cd04104         105 CMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR-----------------DNCLENLQEAGVSEPPVFLVSNFDP  167 (197)
T ss_pred             HhCCCEEEEEecccchhhhhhccccccccHHHHHHHHH-----------------HHHHHHHHHcCCCCCCEEEEeCCCh
Confidence            457899999999999654221         11222222                 111111111 1234589999999  


Q ss_pred             cCCChHHHHHHHHHHHHHHHHh
Q 020549          297 SGAGIEAYFKAVEESAQEFMET  318 (324)
Q Consensus       297 ~g~gv~~l~~~i~~~~~~~~~~  318 (324)
                      .+.|+..|.+.+...+++..+.
T Consensus       168 ~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         168 SDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             hhcChHHHHHHHHHHhhHHHHH
Confidence            6899999999999999875543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.75  E-value=1.1e-17  Score=167.44  Aligned_cols=162  Identities=23%  Similarity=0.287  Sum_probs=103.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|+||||||||+|+|++....             +.+++++|. +..                 .+...     
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------vgn~pGvTv-e~k-----------------~g~~~-----   46 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR-------------VGNWAGVTV-ERK-----------------EGQFS-----   46 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCceE-eeE-----------------EEEEE-----
Confidence            357999999999999999999886442             233333331 100                 01111     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh---hhhHHHH-HHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~-~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                    ..+.++.+|||||+.++...   ......+ ...+....+|++++|+|+++...... +      .
T Consensus        47 --------------~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~-l------~  105 (772)
T PRK09554         47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY-L------T  105 (772)
T ss_pred             --------------cCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHH-H------H
Confidence                          23568899999999876311   1122222 23334456799999999976433222 1      1


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+...++|+++|+||+|+.+.....   ...+.+.+.                       -+.+++++||++|+|++++
T Consensus       106 ~ql~e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~-----------------------LG~pVvpiSA~~g~GIdeL  159 (772)
T PRK09554        106 LQLLELGIPCIVALNMLDIAEKQNIR---IDIDALSAR-----------------------LGCPVIPLVSTRGRGIEAL  159 (772)
T ss_pred             HHHHHcCCCEEEEEEchhhhhccCcH---HHHHHHHHH-----------------------hCCCEEEEEeecCCCHHHH
Confidence            23445789999999999987543221   122222211                       1479999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      ++.+.+...
T Consensus       160 ~~~I~~~~~  168 (772)
T PRK09554        160 KLAIDRHQA  168 (772)
T ss_pred             HHHHHHhhh
Confidence            999987653

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.75  E-value=3.3e-17  Score=144.82  Aligned_cols=170  Identities=20%  Similarity=0.269  Sum_probs=116.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      -|+++|.||||||||+++++..+..             +.+||+||                  |-||.|.+..      
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPK-------------IadYpFTT------------------L~PnLGvV~~------  203 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPK-------------IADYPFTT------------------LVPNLGVVRV------  203 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCc-------------ccCCcccc------------------ccCcccEEEe------
Confidence            3899999999999999999987654             67889998                  5567776653      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                  .....+++-|.||+.+-.... -++..+++.+.+  +-++++|||.+..-  .+...+..+...+..+
T Consensus       204 ------------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER--t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y  269 (369)
T COG0536         204 ------------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER--TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY  269 (369)
T ss_pred             ------------cCCCcEEEecCcccccccccCCCccHHHHHHHHh--hheeEEEEecCcccCCCHHHHHHHHHHHHHHh
Confidence                        235679999999998864333 366677777655  35899999987543  2333232223222332


Q ss_pred             --hhcCCCeEEEeeccccCChH-hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          228 --YKTRLPLVLAFNKTDVAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 --~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                        .-.++|.++|+||+|++..+ ..+.+.+.+.                         ....+...+++||.+++|+++|
T Consensus       270 ~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~-------------------------~~~~~~~~~~ISa~t~~g~~~L  324 (369)
T COG0536         270 SPKLAEKPRIVVLNKIDLPLDEEELEELKKALA-------------------------EALGWEVFYLISALTREGLDEL  324 (369)
T ss_pred             hHHhccCceEEEEeccCCCcCHHHHHHHHHHHH-------------------------HhcCCCcceeeehhcccCHHHH
Confidence              23679999999999966543 2222222221                         1122333333999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFM  316 (324)
Q Consensus       305 ~~~i~~~~~~~~  316 (324)
                      ...+.+.+.+..
T Consensus       325 ~~~~~~~l~~~~  336 (369)
T COG0536         325 LRALAELLEETK  336 (369)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887664

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.75  E-value=1.7e-17  Score=131.53  Aligned_cols=141  Identities=20%  Similarity=0.205  Sum_probs=86.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..........+                                               
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i-----------------------------------------------   34 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAI-----------------------------------------------   34 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCcCcccee-----------------------------------------------
Confidence            469999999999999999998865432211111                                               


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                     .+.=.++||||-  |.........+..  .+..+|+++++.|+......-.-        ....-
T Consensus        35 ---------------~~~~~~IDTPGE--yiE~~~~y~aLi~--ta~dad~V~ll~dat~~~~~~pP--------~fa~~   87 (143)
T PF10662_consen   35 ---------------EYYDNTIDTPGE--YIENPRFYHALIV--TAQDADVVLLLQDATEPRSVFPP--------GFASM   87 (143)
T ss_pred             ---------------EecccEEECChh--heeCHHHHHHHHH--HHhhCCEEEEEecCCCCCccCCc--------hhhcc
Confidence                           011136999992  1111111111111  12457999999999875432210        11222


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .++|+|-|+||+|+...+...+..+...                         ......++|++||.+|+||++|.+.|.
T Consensus        88 f~~pvIGVITK~Dl~~~~~~i~~a~~~L-------------------------~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   88 FNKPVIGVITKIDLPSDDANIERAKKWL-------------------------KNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             cCCCEEEEEECccCccchhhHHHHHHHH-------------------------HHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            4689999999999994332111111111                         122345789999999999999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.75  E-value=6.4e-18  Score=169.64  Aligned_cols=161  Identities=22%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+|+|++|||||||+|+|++....      +      +...++.+    ++++.              +...     
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~------i------v~~~pGvT----~d~~~--------------~~~~-----  319 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREA------V------VEDTPGVT----RDRVS--------------YDAE-----  319 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCce------e------ecCCCCee----EEEEE--------------EEEE-----
Confidence            467999999999999999999986432      1      22223322    11100              0000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                    ..+..+.||||||+....  ......+.....  -..+|+++||+|+..++...+..     .+..
T Consensus       320 --------------~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~-----i~~~  378 (712)
T PRK09518        320 --------------WAGTDFKLVDTGGWEADV--EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDER-----IVRM  378 (712)
T ss_pred             --------------ECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHH
Confidence                          225678999999976421  112222222211  14579999999999877665421     1234


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      +...++|+|+|+||+|+.....   ....+.                         . .....++++||++|.||++|++
T Consensus       379 Lr~~~~pvIlV~NK~D~~~~~~---~~~~~~-------------------------~-lg~~~~~~iSA~~g~GI~eLl~  429 (712)
T PRK09518        379 LRRAGKPVVLAVNKIDDQASEY---DAAEFW-------------------------K-LGLGEPYPISAMHGRGVGDLLD  429 (712)
T ss_pred             HHhcCCCEEEEEECcccccchh---hHHHHH-------------------------H-cCCCCeEEEECCCCCCchHHHH
Confidence            4567899999999999865321   111110                         0 1223568999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.++.
T Consensus       430 ~i~~~l~~  437 (712)
T PRK09518        430 EALDSLKV  437 (712)
T ss_pred             HHHHhccc
Confidence            99998865

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=1.3e-17  Score=159.17  Aligned_cols=158  Identities=25%  Similarity=0.274  Sum_probs=98.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+|+|.+|||||||+|+|++.....            +...++.+    ++..              .+.+.      
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~------------v~~~~~~t----~d~~--------------~~~~~------   45 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAI------------VADTPGVT----RDRI--------------YGEAE------   45 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee------------eCCCCCCc----ccce--------------EEEEE------
Confidence            479999999999999999999865321            22222222    1110              00000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   ..+..+.||||||+...  .......+.....  -..+|+++||+|+..+....+.+.     ...+
T Consensus        46 -------------~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~-----~~~l  105 (435)
T PRK00093         46 -------------WLGREFILIDTGGIEPD--DDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEI-----AKIL  105 (435)
T ss_pred             -------------ECCcEEEEEECCCCCCc--chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH-----HHHH
Confidence                         22568999999998762  1111112222111  134799999999988766554321     2334


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.+...   ...++.                         . .....++++||++|.|++++++.
T Consensus       106 ~~~~~piilv~NK~D~~~~~~---~~~~~~-------------------------~-lg~~~~~~iSa~~g~gv~~l~~~  156 (435)
T PRK00093        106 RKSNKPVILVVNKVDGPDEEA---DAYEFY-------------------------S-LGLGEPYPISAEHGRGIGDLLDA  156 (435)
T ss_pred             HHcCCcEEEEEECccCccchh---hHHHHH-------------------------h-cCCCCCEEEEeeCCCCHHHHHHH
Confidence            456899999999999764221   111111                         0 12335899999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |....
T Consensus       157 I~~~~  161 (435)
T PRK00093        157 ILEEL  161 (435)
T ss_pred             HHhhC
Confidence            98743

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.75  E-value=4.9e-17  Score=147.58  Aligned_cols=201  Identities=20%  Similarity=0.214  Sum_probs=121.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC-----Ccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-----GGI  141 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~  141 (324)
                      .++..|+|+|+||||||||+++|.......+..+.++..||... ..++.-+  .++++    |+.+...+.     .+-
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~-~~~gall--gd~~r----~~~~~~~~~~~~r~~~~  126 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST-RTGGSIL--GDKTR----MERLSRHPNAFIRPSPS  126 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc-ccchhhh--chHhH----HHhhcCCCCeEEEecCC
Confidence            45788999999999999999999988777788899999888542 2111111  12222    222222111     122


Q ss_pred             cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                      +|....++....+.+..+.  ..+++++|+||+|..+...      .+     ...+|+++++++...+..-+....   
T Consensus       127 ~~~l~~~a~~~~~~~~~~~--~~g~d~viieT~Gv~qs~~------~i-----~~~aD~vlvv~~p~~gd~iq~~k~---  190 (332)
T PRK09435        127 SGTLGGVARKTRETMLLCE--AAGYDVILVETVGVGQSET------AV-----AGMVDFFLLLQLPGAGDELQGIKK---  190 (332)
T ss_pred             cccccchHHHHHHHHHHHh--ccCCCEEEEECCCCccchh------HH-----HHhCCEEEEEecCCchHHHHHHHh---
Confidence            3333334455555555555  3478999999999765311      11     124699999987433322111111   


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhcc-CceeeeccccCCC
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAG  300 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~iv~vSA~~g~g  300 (324)
                            ....+..++|+||+|+.+.........++......+..                 ....+ .|++++||++|.|
T Consensus       191 ------gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~-----------------~~~~w~~pVi~vSA~~g~G  247 (332)
T PRK09435        191 ------GIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRP-----------------KDPGWQPPVLTCSALEGEG  247 (332)
T ss_pred             ------hhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccc-----------------cccCCCCCEEEEECCCCCC
Confidence                  11234459999999998765333333333211110000                 00012 5899999999999


Q ss_pred             hHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQ  313 (324)
Q Consensus       301 v~~l~~~i~~~~~  313 (324)
                      +++|++.|.++++
T Consensus       248 IdeL~~~I~~~~~  260 (332)
T PRK09435        248 IDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.75  E-value=5e-18  Score=140.90  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=68.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH-hhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl  243 (324)
                      ...+.+|||||+.++..      ....++  ..+|+++||+|++.... .......+..+... ...++|+++|+||+|+
T Consensus        42 ~~~~~i~D~~G~~~~~~------~~~~~~--~~a~~ii~V~D~s~~~s-~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl  112 (167)
T cd04161          42 KYEVCIFDLGGGANFRG------IWVNYY--AEAHGLVFVVDSSDDDR-VQEVKEILRELLQHPRVSGKPILVLANKQDK  112 (167)
T ss_pred             CEEEEEEECCCcHHHHH------HHHHHH--cCCCEEEEEEECCchhH-HHHHHHHHHHHHcCccccCCcEEEEEeCCCC
Confidence            56789999999866411      112222  34689999999876421 11111112111111 1247899999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC------CChHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG------AGIEAYFKAVEE  310 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g------~gv~~l~~~i~~  310 (324)
                      .......+..+.+. +           ..+.+       +......++++||++|      .|+++.|++|.+
T Consensus       113 ~~~~~~~~i~~~~~-l-----------~~~~~-------~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         113 KNALLGADVIEYLS-L-----------EKLVN-------ENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             cCCCCHHHHHHhcC-c-----------ccccC-------CCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            76542222222211 0           00000       0111357888999998      899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=8.9e-18  Score=160.89  Aligned_cols=162  Identities=23%  Similarity=0.327  Sum_probs=111.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.||+|||||+|+|+|....             +.++|+.| ++                 ...|...      
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~-------------VgNwpGvT-VE-----------------kkeg~~~------   46 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQK-------------VGNWPGVT-VE-----------------KKEGKLK------   46 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCce-------------ecCCCCee-EE-----------------EEEEEEE------
Confidence            45999999999999999999998654             44455443 10                 0012221      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   ..+.++.++|.||.......+.......+.+.....|++|.|+|+..--.....       .-.+..
T Consensus        47 -------------~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE  106 (653)
T COG0370          47 -------------YKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL-------TLQLLE  106 (653)
T ss_pred             -------------ecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH-------HHHHHH
Confidence                         235679999999998875554555555556666778999999999653322221       123556


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .++|+|+++|++|.....-.   .-+.+.|.+.                       -++|++++||++|.|++++...+.
T Consensus       107 ~g~p~ilaLNm~D~A~~~Gi---~ID~~~L~~~-----------------------LGvPVv~tvA~~g~G~~~l~~~i~  160 (653)
T COG0370         107 LGIPMILALNMIDEAKKRGI---RIDIEKLSKL-----------------------LGVPVVPTVAKRGEGLEELKRAII  160 (653)
T ss_pred             cCCCeEEEeccHhhHHhcCC---cccHHHHHHH-----------------------hCCCEEEEEeecCCCHHHHHHHHH
Confidence            89999999999998765322   1222322222                       268999999999999999999998


Q ss_pred             HHHHH
Q 020549          310 ESAQE  314 (324)
Q Consensus       310 ~~~~~  314 (324)
                      +..+.
T Consensus       161 ~~~~~  165 (653)
T COG0370         161 ELAES  165 (653)
T ss_pred             Hhccc
Confidence            75543

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.75  E-value=5.9e-18  Score=143.92  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchh-HHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMT-FMSNMLYACSILYKTRLPLVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~  241 (324)
                      ...+.||||||+++.. +.       .++  ..+|++++|.|..+  ++.... .|...+   ... ..+.|+|+|+||+
T Consensus        65 ~v~l~iwDTaG~~~~~-~~-------~~~--~~ad~iilv~d~t~~~Sf~~~~~~w~~~i---~~~-~~~~piilvgNK~  130 (195)
T cd01873          65 SVSLRLWDTFGDHDKD-RR-------FAY--GRSDVVLLCFSIASPNSLRNVKTMWYPEI---RHF-CPRVPVILVGCKL  130 (195)
T ss_pred             EEEEEEEeCCCChhhh-hc-------ccC--CCCCEEEEEEECCChhHHHHHHHHHHHHH---HHh-CCCCCEEEEEEch
Confidence            5688999999986521 00       011  34677777777644  343332 354333   222 2478999999999


Q ss_pred             ccCChHhHHHHHHhHHHHHHHHhc----CccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          242 DVAQHEFALEWMQDFEVFQAAISS----DHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      |+....... .......+......    ....+..++++        . ++++++|||++|.||+++|+.+++.
T Consensus       131 DL~~~~~~~-~~~~~~~~~~~~~~~~~V~~~e~~~~a~~--------~-~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         131 DLRYADLDE-VNRARRPLARPIKNADILPPETGRAVAKE--------L-GIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             hccccccch-hhhcccccccccccCCccCHHHHHHHHHH--------h-CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            986421000 00000000000000    00011122221        1 3589999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.75  E-value=1.9e-17  Score=130.14  Aligned_cols=168  Identities=18%  Similarity=0.197  Sum_probs=111.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++++++|..-+|||||+-+++...|.-....+                        ++..+..-            
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsT------------------------lQASF~~k------------   53 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLST------------------------LQASFQNK------------   53 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHH------------------------HHHHHhhc------------
Confidence            345689999999999999999999998886432110                        00000000            


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                  .+.......++.||||+||++|.   +++.+   +++.+...++||.|..+++++....|...   ++
T Consensus        54 ------------k~n~ed~ra~L~IWDTAGQErfH---ALGPI---YYRgSnGalLVyDITDrdSFqKVKnWV~E---lr  112 (218)
T KOG0088|consen   54 ------------KVNVEDCRADLHIWDTAGQERFH---ALGPI---YYRGSNGALLVYDITDRDSFQKVKNWVLE---LR  112 (218)
T ss_pred             ------------ccccccceeeeeeeeccchHhhh---ccCce---EEeCCCceEEEEeccchHHHHHHHHHHHH---HH
Confidence                        01111336789999999999972   22221   11233345788888888888777777444   46


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .+....+.++||+||+||.....+.  .++-.              ..++.         .++.++++||+.+.||.+||
T Consensus       113 ~mlGnei~l~IVGNKiDLEeeR~Vt--~qeAe--------------~YAes---------vGA~y~eTSAk~N~Gi~elF  167 (218)
T KOG0088|consen  113 TMLGNEIELLIVGNKIDLEEERQVT--RQEAE--------------AYAES---------VGALYMETSAKDNVGISELF  167 (218)
T ss_pred             HHhCCeeEEEEecCcccHHHhhhhh--HHHHH--------------HHHHh---------hchhheecccccccCHHHHH
Confidence            7778889999999999997654321  11111              11111         24678889999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          306 KAVEESAQEF  315 (324)
Q Consensus       306 ~~i~~~~~~~  315 (324)
                      +.|.....+.
T Consensus       168 e~Lt~~MiE~  177 (218)
T KOG0088|consen  168 ESLTAKMIEH  177 (218)
T ss_pred             HHHHHHHHHH
Confidence            9998876553

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=1.7e-17  Score=153.81  Aligned_cols=166  Identities=19%  Similarity=0.306  Sum_probs=114.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+++.|.|+|+...|||||+.+|.+.....+....|.+.            +                    |.+..+ 
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQh------------I--------------------GAF~V~-  196 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQH------------I--------------------GAFTVT-  196 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccce------------e--------------------ceEEEe-
Confidence            5678899999999999999999998876553322211110            0                    011111 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                            +          ..+..+.|+||||+.-|..-+         .+. ...|++|+||.+.+|+.+++     .+.+
T Consensus       197 ------~----------p~G~~iTFLDTPGHaAF~aMR---------aRGA~vtDIvVLVVAadDGVmpQT-----~EaI  246 (683)
T KOG1145|consen  197 ------L----------PSGKSITFLDTPGHAAFSAMR---------ARGANVTDIVVLVVAADDGVMPQT-----LEAI  246 (683)
T ss_pred             ------c----------CCCCEEEEecCCcHHHHHHHH---------hccCccccEEEEEEEccCCccHhH-----HHHH
Confidence                  0          125688999999976652211         112 23599999999999999987     4555


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ...+..+.|+|+++||||.....-- ..+   ++|.               .++..++.+.+.++++|+||++|+|++.|
T Consensus       247 khAk~A~VpiVvAinKiDkp~a~pe-kv~---~eL~---------------~~gi~~E~~GGdVQvipiSAl~g~nl~~L  307 (683)
T KOG1145|consen  247 KHAKSANVPIVVAINKIDKPGANPE-KVK---RELL---------------SQGIVVEDLGGDVQVIPISALTGENLDLL  307 (683)
T ss_pred             HHHHhcCCCEEEEEeccCCCCCCHH-HHH---HHHH---------------HcCccHHHcCCceeEEEeecccCCChHHH
Confidence            6778899999999999998764311 111   2111               12344557777899999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      .+++.....
T Consensus       308 ~eaill~Ae  316 (683)
T KOG1145|consen  308 EEAILLLAE  316 (683)
T ss_pred             HHHHHHHHH
Confidence            999877654

>PRK09866 hypothetical protein; Provisional

Probab=99.74  E-value=4.4e-17  Score=155.56  Aligned_cols=119  Identities=16%  Similarity=0.063  Sum_probs=76.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC--CCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR--LPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~D  242 (324)
                      ..+++|+||||++.... ..+...+.+.+  ..+|+|+||||+.......+..     .++.+...+  .|+++|+||+|
T Consensus       229 ~~QIIFVDTPGIhk~~~-~~L~k~M~eqL--~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNKID  300 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQ-PHLQKMLNQQL--ARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNKFD  300 (741)
T ss_pred             cCCEEEEECCCCCCccc-hHHHHHHHHHH--hhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEccc
Confidence            46899999999987521 12344455533  3469999999998766554422     123444445  49999999999


Q ss_pred             cCChHh--HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          243 VAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       243 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      +.+...  ...+...+....                 .   ....++..||||||++|.|++.|++.|...
T Consensus       301 l~dreeddkE~Lle~V~~~L-----------------~---q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        301 QQDRNSDDADQVRALISGTL-----------------M---KGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             CCCcccchHHHHHHHHHHHH-----------------H---hcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            975321  111111111000                 0   012245789999999999999999999884

>cd00880 Era_like Era (E

Probab=99.74  E-value=3.1e-17  Score=133.28  Aligned_cols=118  Identities=23%  Similarity=0.258  Sum_probs=77.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhh-HHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ...+.||||||+.++...... .......+  ..+|++++++|+..........     ........+.|+++|+||+|+
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~  116 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL  116 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence            568999999998775321111 01111112  3468999999998876554422     123445578999999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      ...............                      ........+++++||+++.|+++++..|.+.
T Consensus       117 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         117 LPEEEEEELLELRLL----------------------ILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             CChhhHHHHHHHHHh----------------------hcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            886544333210000                      0023456899999999999999999998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.74  E-value=5.2e-17  Score=144.59  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=49.8

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+.++.||||||+.++..      .....+  ..+|++++|||+..+...++.     ..+..+...++|+++++||+|+
T Consensus        62 ~~~~i~liDTPG~~df~~------~~~~~l--~~aD~ailVVDa~~g~~~~t~-----~~~~~~~~~~~p~ivviNK~D~  128 (270)
T cd01886          62 KDHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVAGVEPQTE-----TVWRQADRYNVPRIAFVNKMDR  128 (270)
T ss_pred             CCEEEEEEECCCcHHHHH------HHHHHH--HHcCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence            467899999999877521      122222  235899999999998866542     2224455678999999999999


Q ss_pred             CCh
Q 020549          244 AQH  246 (324)
Q Consensus       244 ~~~  246 (324)
                      ...
T Consensus       129 ~~a  131 (270)
T cd01886         129 TGA  131 (270)
T ss_pred             CCC
Confidence            753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04129 Rho2 Rho2 subfamily

Probab=99.73  E-value=2.4e-17  Score=139.33  Aligned_cols=167  Identities=20%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|++|+|||||+++|....+......++      ...+  ...                       +...     
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~------~~~~--~~~-----------------------~~~~-----   45 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTV------FENY--VTD-----------------------CRVD-----   45 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc------cceE--EEE-----------------------EEEC-----
Confidence            479999999999999999998665543221111      0000  000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchh-HHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMT-FMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~-~~~~~~~~~~~  226 (324)
                                   .....+.+|||||+.++....  ..    .+  ..+++++++.|.  ..++.... .|...+   ..
T Consensus        46 -------------~~~~~l~i~Dt~g~~~~~~~~--~~----~~--~~a~~~llv~~i~~~~s~~~~~~~~~~~i---~~  101 (187)
T cd04129          46 -------------GKPVQLALWDTAGQEEYERLR--PL----SY--SKAHVILIGFAVDTPDSLENVRTKWIEEV---RR  101 (187)
T ss_pred             -------------CEEEEEEEEECCCChhccccc--hh----hc--CCCCEEEEEEECCCHHHHHHHHHHHHHHH---HH
Confidence                         113467899999987652111  00    11  334666655554  44443332 343333   21


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHH--HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEW--MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                       ...+.|+|+|+||+|+.......+.  ........        ....++        ......+++++||++|.||+++
T Consensus       102 -~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~~~e~Sa~~~~~v~~~  164 (187)
T cd04129         102 -YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQ--------QGKRVA--------KEIGAKKYMECSALTGEGVDDV  164 (187)
T ss_pred             -hCCCCCEEEEeeChhhhhCcccccccccCCcCCHH--------HHHHHH--------HHhCCcEEEEccCCCCCCHHHH
Confidence             2246999999999998542110000  00000000        000011        1123357999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      |+.+.+.+.
T Consensus       165 f~~l~~~~~  173 (187)
T cd04129         165 FEAATRAAL  173 (187)
T ss_pred             HHHHHHHHh
Confidence            999997664

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.73  E-value=5.9e-18  Score=139.33  Aligned_cols=159  Identities=18%  Similarity=0.252  Sum_probs=96.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      ||+++|++|||||||+++|.+..+...+..++     +.......  +...                             
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~-----~~~~~~~~--~~~~-----------------------------   44 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI-----GIDSYSKE--VSID-----------------------------   44 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS-----SEEEEEEE--EEET-----------------------------
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccc-----cccccccc--cccc-----------------------------
Confidence            69999999999999999999987765332110     00000000  0000                             


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                  .....+.|||++|+.++..   .   ....+  ..+|+++++.|.  ..++.....|...+   ....
T Consensus        45 ------------~~~~~l~i~D~~g~~~~~~---~---~~~~~--~~~~~~ii~fd~~~~~S~~~~~~~~~~i---~~~~  101 (162)
T PF00071_consen   45 ------------GKPVNLEIWDTSGQERFDS---L---RDIFY--RNSDAIIIVFDVTDEESFENLKKWLEEI---QKYK  101 (162)
T ss_dssp             ------------TEEEEEEEEEETTSGGGHH---H---HHHHH--TTESEEEEEEETTBHHHHHTHHHHHHHH---HHHS
T ss_pred             ------------ccccccccccccccccccc---c---ccccc--cccccccccccccccccccccccccccc---cccc
Confidence                        2245788999999877521   1   11112  234566666654  34444444554333   3333


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+.....+.  .++.+.+.                      ... ..+++++||+++.||.++|..+
T Consensus       102 ~~~~~iivvg~K~D~~~~~~v~--~~~~~~~~----------------------~~~-~~~~~e~Sa~~~~~v~~~f~~~  156 (162)
T PF00071_consen  102 PEDIPIIVVGNKSDLSDEREVS--VEEAQEFA----------------------KEL-GVPYFEVSAKNGENVKEIFQEL  156 (162)
T ss_dssp             TTTSEEEEEEETTTGGGGSSSC--HHHHHHHH----------------------HHT-TSEEEEEBTTTTTTHHHHHHHH
T ss_pred             cccccceeeeccccccccccch--hhHHHHHH----------------------HHh-CCEEEEEECCCCCCHHHHHHHH
Confidence            4468999999999988632211  01111111                      112 3899999999999999999999


Q ss_pred             HHHHH
Q 020549          309 EESAQ  313 (324)
Q Consensus       309 ~~~~~  313 (324)
                      ++.+.
T Consensus       157 i~~i~  161 (162)
T PF00071_consen  157 IRKIL  161 (162)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=139.49  Aligned_cols=171  Identities=20%  Similarity=0.270  Sum_probs=108.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..+.|+|.|+||||||||++++++....             +.+||+||.    ..              +-|...    
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE-------------vA~YPFTTK----~i--------------~vGhfe----  211 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE-------------VAPYPFTTK----GI--------------HVGHFE----  211 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCc-------------cCCCCcccc----ce--------------eEeeee----
Confidence            4577999999999999999999998654             788999981    10              001111    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCch-hHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPM-TFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~  225 (324)
                                     .+...++++||||+.+.-............++ ....++|+|++|.+..+.-. .....++.  .
T Consensus       212 ---------------~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~--e  274 (346)
T COG1084         212 ---------------RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLE--E  274 (346)
T ss_pred             ---------------cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHH--H
Confidence                           23568999999998764111111111111111 24568999999998765432 22222222  1


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .......|+++|+||+|+...+...+....+.                          -......+.+|+..+.+++.+.
T Consensus       275 Ik~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~d~~~  328 (346)
T COG1084         275 IKELFKAPIVVVINKIDIADEEKLEEIEASVL--------------------------EEGGEEPLKISATKGCGLDKLR  328 (346)
T ss_pred             HHHhcCCCeEEEEecccccchhHHHHHHHHHH--------------------------hhccccccceeeeehhhHHHHH
Confidence            22234589999999999998765443332221                          0122346679999999999988


Q ss_pred             HHHHHHHHHHH
Q 020549          306 KAVEESAQEFM  316 (324)
Q Consensus       306 ~~i~~~~~~~~  316 (324)
                      ..+.....+..
T Consensus       329 ~~v~~~a~~~~  339 (346)
T COG1084         329 EEVRKTALEPL  339 (346)
T ss_pred             HHHHHHhhchh
Confidence            88877754443

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.73  E-value=1.3e-16  Score=139.28  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=38.7

Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      .+|+++|+||+|+.+.+....    +                            ....+++++||++|.|++++++.|.+
T Consensus       176 y~p~iiV~NK~Dl~~~~~~~~----~----------------------------~~~~~~~~~SA~~g~gi~~l~~~i~~  223 (233)
T cd01896         176 YIPCLYVYNKIDLISIEELDL----L----------------------------ARQPNSVVISAEKGLNLDELKERIWD  223 (233)
T ss_pred             EeeEEEEEECccCCCHHHHHH----H----------------------------hcCCCEEEEcCCCCCCHHHHHHHHHH
Confidence            369999999999987653321    1                            12246899999999999999999988


Q ss_pred             HH
Q 020549          311 SA  312 (324)
Q Consensus       311 ~~  312 (324)
                      .+
T Consensus       224 ~L  225 (233)
T cd01896         224 KL  225 (233)
T ss_pred             Hh
Confidence            65

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.72  E-value=7.2e-17  Score=151.56  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=75.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|||+.++...++.     ..+..+...++| +|+|+||+|+
T Consensus        74 ~~~i~~iDtPGh~~f~~------~~~~~~--~~~d~~llVvd~~~g~~~~t~-----~~~~~~~~~g~~~~IvviNK~D~  140 (394)
T PRK12736         74 KRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVAATDGPMPQTR-----EHILLARQVGVPYLVVFLNKVDL  140 (394)
T ss_pred             CcEEEEEECCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCEEEEEEEecCC
Confidence            56789999999766521      111111  357999999999988776652     223445567888 5789999999


Q ss_pred             CChHhHHHH-HHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCC--------ChHHHHHHHHHHHH
Q 020549          244 AQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA--------GIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~--------gv~~l~~~i~~~~~  313 (324)
                      ++.+...+. .+++..+.+.+                   .+ ....+++++||++|.        ++..|++.|.+.++
T Consensus       141 ~~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        141 VDDEELLELVEMEVRELLSEY-------------------DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHh-------------------CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            865433222 22333222111                   11 124689999999983        67888888888765

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=1.5e-16  Score=141.58  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +.+.++.||||||+.+|..      .....+  ..+|.+++|+|+..+......     ..+......++|+++++||+|
T Consensus        68 ~~~~~i~liDTPG~~df~~------~~~~~l--~~aD~~IlVvda~~g~~~~~~-----~i~~~~~~~~~P~iivvNK~D  134 (267)
T cd04169          68 YRDCVINLLDTPGHEDFSE------DTYRTL--TAVDSAVMVIDAAKGVEPQTR-----KLFEVCRLRGIPIITFINKLD  134 (267)
T ss_pred             eCCEEEEEEECCCchHHHH------HHHHHH--HHCCEEEEEEECCCCccHHHH-----HHHHHHHhcCCCEEEEEECCc
Confidence            3477899999999877621      122222  236999999999887654331     112334456899999999999


Q ss_pred             cCCh
Q 020549          243 VAQH  246 (324)
Q Consensus       243 l~~~  246 (324)
                      +...
T Consensus       135 ~~~a  138 (267)
T cd04169         135 REGR  138 (267)
T ss_pred             cCCC
Confidence            8754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1.7e-16  Score=151.27  Aligned_cols=202  Identities=18%  Similarity=0.246  Sum_probs=115.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      -+.++|||+|+...|||-|+..|.+.....+.-..+       +..-+.+.+.+...                       
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggi-------tqqIgAt~fp~~ni-----------------------  522 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGI-------TQQIGATYFPAENI-----------------------  522 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccce-------eeeccccccchHHH-----------------------
Confidence            356779999999999999999998865544322222       11111111111110                       


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                        ...++...........-+.+++|||||++.|...        +..-+++||++|+|||..+|+.+++     +..++.
T Consensus       523 --~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl--------RsrgsslC~~aIlvvdImhGlepqt-----iESi~l  587 (1064)
T KOG1144|consen  523 --REKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL--------RSRGSSLCDLAILVVDIMHGLEPQT-----IESINL  587 (1064)
T ss_pred             --HHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh--------hhccccccceEEEEeehhccCCcch-----hHHHHH
Confidence              0011111111111133567899999997666221        1112367899999999999999987     555677


Q ss_pred             HhhcCCCeEEEeeccccCChHhH---HHHHHhHH----HHHHHHhcCc-cchhhHHHHHHHhHHHHh------ccCceee
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFA---LEWMQDFE----VFQAAISSDH-SYTSTLTNSLSLALDEFY------KNLKSVG  292 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~----~l~~~~~~~~-~~~~~l~~~~~~~~~~~~------~~~~iv~  292 (324)
                      +.....|+|+++||+|.+.....   ..+...+.    .....++.+. .....|+ ++++-.+-||      ..+.+||
T Consensus       588 LR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa-EQgLN~~LyykNk~~~~~vsiVP  666 (1064)
T KOG1144|consen  588 LRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA-EQGLNAELYYKNKEMGETVSIVP  666 (1064)
T ss_pred             HHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HcccchhheeecccccceEEeee
Confidence            88889999999999998754211   01111111    1111110000 0000111 1111111222      2467999


Q ss_pred             eccccCCChHHHHHHHHHHHHH
Q 020549          293 VSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       293 vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      +||.+|+||.+|+.+|++....
T Consensus       667 TSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  667 TSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             cccccCCCcHHHHHHHHHHHHH
Confidence            9999999999999999987754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.72  E-value=2.9e-17  Score=160.89  Aligned_cols=115  Identities=25%  Similarity=0.326  Sum_probs=73.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +.++.+|||||+.++.............+....+|++++|+|+++.....       .....+...++|+++|+||+|+.
T Consensus        40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l-------~l~~ql~~~~~PiIIVlNK~Dl~  112 (591)
T TIGR00437        40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNL-------YLTLQLLELGIPMILALNLVDEA  112 (591)
T ss_pred             CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhH-------HHHHHHHhcCCCEEEEEehhHHH
Confidence            45689999999987633222222222333345679999999997632211       11123345689999999999986


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                      +......   +.+.+.+                      . -+.+++++||++|+|++++++.+.+..
T Consensus       113 ~~~~i~~---d~~~L~~----------------------~-lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       113 EKKGIRI---DEEKLEE----------------------R-LGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             HhCCChh---hHHHHHH----------------------H-cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5432211   1121111                      1 247899999999999999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.72  E-value=7.1e-17  Score=131.05  Aligned_cols=53  Identities=23%  Similarity=0.361  Sum_probs=37.6

Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      +.|+++|+||+|+......    .......                      ......+++++||++|.|+++++..|.
T Consensus       108 ~~p~ivv~nK~D~~~~~~~----~~~~~~~----------------------~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       108 NVPIILVGNKIDLRDAKLK----THVAFLF----------------------AKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             CCcEEEEEEcccCCcchhh----HHHHHHH----------------------hhccCCceEEeecCCCCCHHHHHHHhh
Confidence            7899999999999865411    1111111                      112346799999999999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.72  E-value=1.1e-16  Score=150.99  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=74.8

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D  242 (324)
                      ...+.||||||+++|..      .+....  ..+|++++|||+.++. ..+..  +.+   ..+...+ .|+++|+||+|
T Consensus        79 ~~~i~liDtPGh~~f~~------~~~~g~--~~aD~aIlVVDa~~g~~~~qt~--e~l---~~l~~~gi~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMA------TMLSGA--ALMDGALLVIAANEPCPQPQTK--EHL---MALEIIGIKNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHHHHHH------HHHHHH--HHCCEEEEEEECCCCccccchH--HHH---HHHHHcCCCeEEEEEEccc
Confidence            35789999999877521      121111  3469999999999876 44331  112   2233344 46899999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      +.+.+...+..+++..+.+.                    .+....+++++||++|.|+++|++.|...++
T Consensus       146 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       146 LVSKEKALENYEEIKEFVKG--------------------TVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             cCCHHHHHHHHHHHHhhhhh--------------------cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            98765432222222211110                    0123578999999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.72  E-value=2.6e-16  Score=129.54  Aligned_cols=119  Identities=18%  Similarity=0.202  Sum_probs=72.6

Q ss_pred             CEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549          167 DYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT  241 (324)
Q Consensus       167 ~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~  241 (324)
                      .+.+|||||+.....    .......+..++.. ...+.+++++|..........     .....+...+.|+++|+||+
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-----~~~~~l~~~~~~vi~v~nK~  120 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL-----EMLDWLEELGIPFLVVLTKA  120 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-----HHHHHHHHcCCCEEEEEEch
Confidence            788999999654311    01111122233332 234788899988765433321     11234455679999999999


Q ss_pred             ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      |+.+...............+                     ......+++++||+++.|++++++.|.++
T Consensus       121 D~~~~~~~~~~~~~~~~~l~---------------------~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         121 DKLKKSELAKALKEIKKELK---------------------LFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hcCChHHHHHHHHHHHHHHH---------------------hccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            99876543322222221100                     12345789999999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=140.19  Aligned_cols=198  Identities=19%  Similarity=0.246  Sum_probs=123.2

Q ss_pred             hhhhhhhhHhhhhhhhhhhhccc--cCCCCC--CCccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           32 KANDKEKEEITESMDKLHIEESS--SGLAGS--SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      |.++.....++.+|.+++.+...  .+..+.  .-.-....-..|+++|+|++|||||+++|++....            
T Consensus        22 KaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~se------------   89 (365)
T COG1163          22 KATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSE------------   89 (365)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcc------------
Confidence            44555556778888888776655  222111  11112334467999999999999999999987543            


Q ss_pred             cccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hH
Q 020549          108 AVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SG  186 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~  186 (324)
                       +.+++|||-    ..+              -|++.                   ..+.+++|+|+||+.+-...+. .+
T Consensus        90 -va~y~FTTl----~~V--------------PG~l~-------------------Y~ga~IQild~Pgii~gas~g~grG  131 (365)
T COG1163          90 -VADYPFTTL----EPV--------------PGMLE-------------------YKGAQIQLLDLPGIIEGASSGRGRG  131 (365)
T ss_pred             -ccccCceec----ccc--------------cceEe-------------------ecCceEEEEcCcccccCcccCCCCc
Confidence             667777771    111              12222                   3488999999999887533222 12


Q ss_pred             HHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH--------------------------------------------HH
Q 020549          187 AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM--------------------------------------------LY  222 (324)
Q Consensus       187 ~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~--------------------------------------------~~  222 (324)
                      .++....  ..||++++|+|+.......+.+..+                                            +.
T Consensus       132 ~~vlsv~--R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~  209 (365)
T COG1163         132 RQVLSVA--RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILR  209 (365)
T ss_pred             ceeeeee--ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHH
Confidence            2222222  3479999999986544321111111                                            11


Q ss_pred             -------------------HHHHH--hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhH
Q 020549          223 -------------------ACSIL--YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLAL  281 (324)
Q Consensus       223 -------------------~~~~~--~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  281 (324)
                                         .+..+  ...-+|.+.|+||+|+.+.+....+    .                        
T Consensus       210 Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l----~------------------------  261 (365)
T COG1163         210 EYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERL----A------------------------  261 (365)
T ss_pred             HhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHH----H------------------------
Confidence                               00111  1234799999999999985532211    1                        


Q ss_pred             HHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          282 DEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       282 ~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                          ...+.+++||++|.|+++|.+.|.+.+.
T Consensus       262 ----~~~~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         262 ----RKPNSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ----hccceEEEecccCCCHHHHHHHHHHhhC
Confidence                1237899999999999999999998764

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.71  E-value=3.6e-18  Score=130.41  Aligned_cols=162  Identities=19%  Similarity=0.222  Sum_probs=107.3

Q ss_pred             EEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHH
Q 020549           74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD  153 (324)
Q Consensus        74 iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  153 (324)
                      ++|.+++|||.|+-++-...|..+.-+..++             +|.|+.+                             
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvg-------------id~rnkl-----------------------------   39 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVG-------------IDFRNKL-----------------------------   39 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeee-------------eccccce-----------------------------
Confidence            6899999999999888776665443332222             2223221                             


Q ss_pred             HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC
Q 020549          154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP  233 (324)
Q Consensus       154 ~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p  233 (324)
                           +......+++++|||+||++|.  +    ....+.+.+.+-+++|.|.+..+++....|...+   ..+.+..+.
T Consensus        40 -----i~~~~~kvklqiwdtagqerfr--s----vt~ayyrda~allllydiankasfdn~~~wlsei---~ey~k~~v~  105 (192)
T KOG0083|consen   40 -----IDMDDKKVKLQIWDTAGQERFR--S----VTHAYYRDADALLLLYDIANKASFDNCQAWLSEI---HEYAKEAVA  105 (192)
T ss_pred             -----eccCCcEEEEEEeeccchHHHh--h----hhHhhhcccceeeeeeecccchhHHHHHHHHHHH---HHHHHhhHh
Confidence                 0011346789999999999982  2    2223344444456777777888888877775544   455666788


Q ss_pred             eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          234 LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       234 ~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      +.+++||||+.+...+.  .++              +..|++++         +.|+.++|||+|-||+..|-.|.+.+.
T Consensus       106 l~llgnk~d~a~er~v~--~dd--------------g~kla~~y---------~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen  106 LMLLGNKCDLAHERAVK--RDD--------------GEKLAEAY---------GIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             Hhhhccccccchhhccc--cch--------------HHHHHHHH---------CCCceeccccccccHhHHHHHHHHHHH
Confidence            89999999997643221  011              22233322         478999999999999999999999876


Q ss_pred             HHH
Q 020549          314 EFM  316 (324)
Q Consensus       314 ~~~  316 (324)
                      ..+
T Consensus       161 k~~  163 (192)
T KOG0083|consen  161 KLK  163 (192)
T ss_pred             Hhc
Confidence            543

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.71  E-value=1e-16  Score=152.32  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHhhcCC-CeEEEeec
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRL-PLVLAFNK  240 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK  240 (324)
                      .+..+.||||||+.++..      .+...  ...+|++++|+|+.+  +...++.+.  +   ..+...+. |+++|+||
T Consensus        82 ~~~~i~liDtpG~~~~~~------~~~~~--~~~aD~~ilVvDa~~~~~~~~~~~~~--~---~~~~~~~~~~iivviNK  148 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVK------NMITG--ASQADAAVLVVAADDAGGVMPQTREH--V---FLARTLGINQLIVAINK  148 (425)
T ss_pred             CCeEEEEEECCCcccchh------hHhhc--hhcCCEEEEEEEcccCCCCCcchHHH--H---HHHHHcCCCeEEEEEEc
Confidence            367899999999876521      11111  134799999999988  665554332  2   22333454 68999999


Q ss_pred             cccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHHH
Q 020549          241 TDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       241 ~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~  305 (324)
                      +|+...  +......+++..+.+..                   .+. ...+++++||++|.|++++.
T Consensus       149 ~Dl~~~~~~~~~~~~~~i~~~l~~~-------------------g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        149 MDAVNYDEKRYEEVKEEVSKLLKMV-------------------GYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhh-------------------CCCcCcceEEEeecccCCCccccc
Confidence            999752  22222222222221110                   110 13679999999999998743

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.71  E-value=1.2e-16  Score=133.60  Aligned_cols=162  Identities=19%  Similarity=0.249  Sum_probs=96.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+++|..|||||||+++|.......    ...+....+..+.                                 
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~---------------------------------   54 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIK---------------------------------   54 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEE---------------------------------
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceee---------------------------------
Confidence            466889999999999999999998753321    1110000000000                                 


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh-hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-H
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF-TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-C  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~  224 (324)
                                      ..+..+.|||.+|+..+. .|....         ..+|.+|||||+++... .......+.. +
T Consensus        55 ----------------~~~~~~~~~d~gG~~~~~~~w~~y~---------~~~~~iIfVvDssd~~~-l~e~~~~L~~ll  108 (175)
T PF00025_consen   55 ----------------YKGYSLTIWDLGGQESFRPLWKSYF---------QNADGIIFVVDSSDPER-LQEAKEELKELL  108 (175)
T ss_dssp             ----------------ETTEEEEEEEESSSGGGGGGGGGGH---------TTESEEEEEEETTGGGG-HHHHHHHHHHHH
T ss_pred             ----------------eCcEEEEEEeccccccccccceeec---------cccceeEEEEeccccee-ecccccchhhhc
Confidence                            125688999999986642 121111         23589999999975321 1111111211 1


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++++||+|+...-...++...+. +           ..+         .......++.|||++|+|+.+.
T Consensus       109 ~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~-l-----------~~l---------~~~~~~~v~~~sa~~g~Gv~e~  167 (175)
T PF00025_consen  109 NDPELKDIPILILANKQDLPDAMSEEEIKEYLG-L-----------EKL---------KNKRPWSVFSCSAKTGEGVDEG  167 (175)
T ss_dssp             TSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT-G-----------GGT---------TSSSCEEEEEEBTTTTBTHHHH
T ss_pred             chhhcccceEEEEeccccccCcchhhHHHhhhh-h-----------hhc---------ccCCceEEEeeeccCCcCHHHH
Confidence            111124699999999999876432222222111 0           000         0012467999999999999999


Q ss_pred             HHHHHHHH
Q 020549          305 FKAVEESA  312 (324)
Q Consensus       305 ~~~i~~~~  312 (324)
                      +++|.+.+
T Consensus       168 l~WL~~~~  175 (175)
T PF00025_consen  168 LEWLIEQI  175 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.71  E-value=8.4e-17  Score=139.10  Aligned_cols=166  Identities=20%  Similarity=0.200  Sum_probs=98.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|++|||||||+++++...+...+.+++..   .+....+.                           ..  
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~---~~~~~~~~---------------------------~~--   54 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV---EVHPLKFY---------------------------TN--   54 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEEE---------------------------EC--
Confidence            34578999999999999999888776554333221100   00000000                           00  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.+|||+|+.++..  .    ....+  ..++.+++++|.....  .....|...+   
T Consensus        55 ----------------~~~i~i~~~Dt~g~~~~~~--~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i---  107 (215)
T PTZ00132         55 ----------------CGPICFNVWDTAGQEKFGG--L----RDGYY--IKGQCAIIMFDVTSRITYKNVPNWHRDI---  107 (215)
T ss_pred             ----------------CeEEEEEEEECCCchhhhh--h----hHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHH---
Confidence                            2246788999999876521  1    11112  2347788888876432  2222332222   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ... ..++|+++|+||+|+.......+.. .   +.                      . ..+..++++||++|.|++++
T Consensus       108 ~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~-~---~~----------------------~-~~~~~~~e~Sa~~~~~v~~~  159 (215)
T PTZ00132        108 VRV-CENIPIVLVGNKVDVKDRQVKARQI-T---FH----------------------R-KKNLQYYDISAKSNYNFEKP  159 (215)
T ss_pred             HHh-CCCCCEEEEEECccCccccCCHHHH-H---HH----------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence            112 2468999999999986432111111 0   00                      1 12467899999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 020549          305 FKAVEESAQEFMETY  319 (324)
Q Consensus       305 ~~~i~~~~~~~~~~~  319 (324)
                      |..|.+.+...+..+
T Consensus       160 f~~ia~~l~~~p~~~  174 (215)
T PTZ00132        160 FLWLARRLTNDPNLV  174 (215)
T ss_pred             HHHHHHHHhhcccce
Confidence            999999887655544

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=1.5e-16  Score=150.18  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      +.++.|+||||+.+|..      .+...+  ..+|++++|||+..+...++.     ..+..+...++| +|+|+||+|+
T Consensus        74 ~~~~~~iDtPGh~~~~~------~~~~~~--~~~D~~ilVvda~~g~~~qt~-----~~~~~~~~~g~~~iIvvvNK~D~  140 (409)
T CHL00071         74 NRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVSAADGPMPQTK-----EHILLAKQVGVPNIVVFLNKEDQ  140 (409)
T ss_pred             CeEEEEEECCChHHHHH------HHHHHH--HhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEccCC
Confidence            56789999999765421      121222  346999999999988776552     223445567889 6789999999


Q ss_pred             CChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC
Q 020549          244 AQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG  300 (324)
Q Consensus       244 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g  300 (324)
                      ++.+...+.. +++..+.+.+                   .+. ...+++++||++|.|
T Consensus       141 ~~~~~~~~~~~~~l~~~l~~~-------------------~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        141 VDDEELLELVELEVRELLSKY-------------------DFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCHHHHHHHHHHHHHHHHHHh-------------------CCCCCcceEEEcchhhccc
Confidence            8754432221 2333222111                   111 137899999999863

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.70  E-value=9.9e-17  Score=157.13  Aligned_cols=113  Identities=18%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||+.+|..      .+.+.++  .+|++++|+|+.++...++...     +......++|+|+|+||+|+.
T Consensus        69 ~~~l~liDTPG~~dF~~------~v~~~l~--~aD~aILVvDat~g~~~qt~~~-----~~~~~~~~ipiIiViNKiDl~  135 (595)
T TIGR01393        69 TYVLNLIDTPGHVDFSY------EVSRSLA--ACEGALLLVDAAQGIEAQTLAN-----VYLALENDLEIIPVINKIDLP  135 (595)
T ss_pred             EEEEEEEECCCcHHHHH------HHHHHHH--hCCEEEEEecCCCCCCHhHHHH-----HHHHHHcCCCEEEEEECcCCC
Confidence            36789999999988622      2222332  3689999999998876654211     112234578999999999986


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      .... ....+++.   +              .++      ....+++++||++|.|+++|++.|.+.++.
T Consensus       136 ~~~~-~~~~~el~---~--------------~lg------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       136 SADP-ERVKKEIE---E--------------VIG------LDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             ccCH-HHHHHHHH---H--------------HhC------CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            4321 11111221   1              000      112358999999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.70  E-value=1.1e-15  Score=133.39  Aligned_cols=202  Identities=19%  Similarity=0.273  Sum_probs=126.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGI  141 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~  141 (324)
                      ..+..+|+|.|.||||||||+..|.......+..+.|+..||.. .++++.  -+-++++.++.-..-+.    .++.|.
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGs--iLGDRiRM~~~~~~~~vFiRs~~srG~  124 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGS--ILGDRIRMQRLAVDPGVFIRSSPSRGT  124 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCcc--ccccHhhHHhhccCCCeEEeecCCCcc
Confidence            34567899999999999999999999999999999999999854 333332  23455555443322111    112222


Q ss_pred             cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                      .-   .+|......+..+++.  +++++|++|.|..+.-      ..+.     ..+|++++|.-+..+-+-+..-..++
T Consensus       125 lG---GlS~at~~~i~~ldAa--G~DvIIVETVGvGQse------v~I~-----~~aDt~~~v~~pg~GD~~Q~iK~Gim  188 (323)
T COG1703         125 LG---GLSRATREAIKLLDAA--GYDVIIVETVGVGQSE------VDIA-----NMADTFLVVMIPGAGDDLQGIKAGIM  188 (323)
T ss_pred             ch---hhhHHHHHHHHHHHhc--CCCEEEEEecCCCcch------hHHh-----hhcceEEEEecCCCCcHHHHHHhhhh
Confidence            22   3566666666666644  7999999999976641      1121     22588888887765544443333333


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCC
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAG  300 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~g  300 (324)
                               .+.-|+|+||.|+...+...   .++...+....              ..+ .... ..|++.+||.+|+|
T Consensus       189 ---------EiaDi~vINKaD~~~A~~a~---r~l~~al~~~~--------------~~~-~~~~W~ppv~~t~A~~g~G  241 (323)
T COG1703         189 ---------EIADIIVINKADRKGAEKAA---RELRSALDLLR--------------EVW-RENGWRPPVVTTSALEGEG  241 (323)
T ss_pred             ---------hhhheeeEeccChhhHHHHH---HHHHHHHHhhc--------------ccc-cccCCCCceeEeeeccCCC
Confidence                     34559999999965543221   11111111100              000 1111 35899999999999


Q ss_pred             hHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQ  313 (324)
Q Consensus       301 v~~l~~~i~~~~~  313 (324)
                      +++|++.|.++..
T Consensus       242 i~~L~~ai~~h~~  254 (323)
T COG1703         242 IDELWDAIEDHRK  254 (323)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998865

>PLN03127 Elongation factor Tu; Provisional

Probab=99.70  E-value=3.2e-16  Score=148.71  Aligned_cols=117  Identities=22%  Similarity=0.281  Sum_probs=73.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl  243 (324)
                      +.++.|+||||+++|..      .+...+  ..+|++++|||+.++...++     ...+..+...++|. |+|+||+|+
T Consensus       123 ~~~i~~iDtPGh~~f~~------~~~~g~--~~aD~allVVda~~g~~~qt-----~e~l~~~~~~gip~iIvviNKiDl  189 (447)
T PLN03127        123 KRHYAHVDCPGHADYVK------NMITGA--AQMDGGILVVSAPDGPMPQT-----KEHILLARQVGVPSLVVFLNKVDV  189 (447)
T ss_pred             CeEEEEEECCCccchHH------HHHHHH--hhCCEEEEEEECCCCCchhH-----HHHHHHHHHcCCCeEEEEEEeecc
Confidence            56889999999876521      111111  34799999999998876655     22334566678995 689999999


Q ss_pred             CChHhHHHHHH-hHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccc---cCCC-------hHHHHHHHHHH
Q 020549          244 AQHEFALEWMQ-DFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSV---SGAG-------IEAYFKAVEES  311 (324)
Q Consensus       244 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~---~g~g-------v~~l~~~i~~~  311 (324)
                      ++.+...+..+ ++..+...+                   .| ....+++++||.   +|.|       +..|++.|...
T Consensus       190 v~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        190 VDDEELLELVEMELRELLSFY-------------------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCHHHHHHHHHHHHHHHHHHh-------------------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            86543322221 222221110                   11 123688999886   4555       77888888887


Q ss_pred             HH
Q 020549          312 AQ  313 (324)
Q Consensus       312 ~~  313 (324)
                      ++
T Consensus       251 lp  252 (447)
T PLN03127        251 IP  252 (447)
T ss_pred             CC
Confidence            65

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=1.1e-16  Score=143.02  Aligned_cols=70  Identities=19%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+.++.||||||+.++..      .....+  ..+|.+++|+|+..+.....     ...+..+...++|+++|+||+|+
T Consensus        62 ~~~~i~liDtPG~~~f~~------~~~~~l--~~aD~~i~Vvd~~~g~~~~~-----~~~~~~~~~~~~p~iivvNK~D~  128 (268)
T cd04170          62 KGHKINLIDTPGYADFVG------ETRAAL--RAADAALVVVSAQSGVEVGT-----EKLWEFADEAGIPRIIFINKMDR  128 (268)
T ss_pred             CCEEEEEEECcCHHHHHH------HHHHHH--HHCCEEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECCcc
Confidence            356889999999866521      122222  23699999999988765442     11123445678999999999998


Q ss_pred             CCh
Q 020549          244 AQH  246 (324)
Q Consensus       244 ~~~  246 (324)
                      ...
T Consensus       129 ~~~  131 (268)
T cd04170         129 ERA  131 (268)
T ss_pred             CCC
Confidence            865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=9.5e-17  Score=153.63  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D  242 (324)
                      .+.++.||||||+.+|..      .+...+  ..+|++++|||+..+...++...  +   ..+...+ .|+|+|+||+|
T Consensus       105 ~~~~i~~iDTPGh~~f~~------~~~~~l--~~aD~allVVDa~~G~~~qt~~~--~---~l~~~lg~~~iIvvvNKiD  171 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTR------NMATGA--STCDLAILLIDARKGVLDQTRRH--S---FIATLLGIKHLVVAVNKMD  171 (474)
T ss_pred             CCcEEEEEECCCcHHHHH------HHHHHH--hhCCEEEEEEECCCCccccchHH--H---HHHHHhCCCceEEEEEeec
Confidence            356899999999655411      122221  45799999999999887665321  1   1222233 46889999999


Q ss_pred             cCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          243 VAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       243 l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ++..+  ...+....+..+.+.+                   .+....+++|+||++|.|++.+
T Consensus       172 ~~~~~~~~~~~i~~~l~~~~~~~-------------------~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        172 LVDYSEEVFERIREDYLTFAEQL-------------------PGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cccchhHHHHHHHHHHHHHHHhc-------------------CCCCCceEEEEEeecCCCcccc
Confidence            98532  1222222222111110                   1123578999999999999875

>PRK12735 elongation factor Tu; Reviewed

Probab=99.69  E-value=2.7e-16  Score=147.83  Aligned_cols=117  Identities=18%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeE-EEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl  243 (324)
                      +.++.|+||||+++|..      .+...  ...+|++++|+|+..+...++.     ..+..+...++|.+ +|+||+|+
T Consensus        74 ~~~i~~iDtPGh~~f~~------~~~~~--~~~aD~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~Dl  140 (396)
T PRK12735         74 NRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM  140 (396)
T ss_pred             CcEEEEEECCCHHHHHH------HHHhh--hccCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecCC
Confidence            56789999999865421      11111  1457999999999987765542     22244556788976 57999999


Q ss_pred             CChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCC----------ChHHHHHHHHHH
Q 020549          244 AQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGA----------GIEAYFKAVEES  311 (324)
Q Consensus       244 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~----------gv~~l~~~i~~~  311 (324)
                      .+.+...+.. .++..+.+..                   .+. ...+++++||++|.          ++..|++.|...
T Consensus       141 ~~~~~~~~~~~~ei~~~l~~~-------------------~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        141 VDDEELLELVEMEVRELLSKY-------------------DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             cchHHHHHHHHHHHHHHHHHc-------------------CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            8643322221 1232222110                   111 13789999999984          678899888887


Q ss_pred             HH
Q 020549          312 AQ  313 (324)
Q Consensus       312 ~~  313 (324)
                      ++
T Consensus       202 ~~  203 (396)
T PRK12735        202 IP  203 (396)
T ss_pred             CC
Confidence            64

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.69  E-value=3e-16  Score=147.92  Aligned_cols=115  Identities=23%  Similarity=0.295  Sum_probs=73.3

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcCC-CeEEEeeccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRL-PLVLAFNKTD  242 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D  242 (324)
                      ..+.||||||+.+|..         .++.. ..+|++++|+|+.++. ..++..  .+   ..+...+. |+++|+||+|
T Consensus        85 ~~i~liDtPG~~~f~~---------~~~~~~~~~D~~llVVDa~~~~~~~~t~~--~l---~~l~~~~i~~iiVVlNK~D  150 (411)
T PRK04000         85 RRVSFVDAPGHETLMA---------TMLSGAALMDGAILVIAANEPCPQPQTKE--HL---MALDIIGIKNIVIVQNKID  150 (411)
T ss_pred             cEEEEEECCCHHHHHH---------HHHHHHhhCCEEEEEEECCCCCCChhHHH--HH---HHHHHcCCCcEEEEEEeec
Confidence            5789999999766521         11211 3469999999999875 343311  12   22333444 6899999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      +.+.+......+.+..+.+.                    .+....+++++||++|.|+++|++.|...++.
T Consensus       151 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        151 LVSKERALENYEQIKEFVKG--------------------TVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             cccchhHHHHHHHHHHHhcc--------------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            98754332222222211110                    01234789999999999999999999987653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.69  E-value=1.1e-16  Score=138.84  Aligned_cols=107  Identities=18%  Similarity=0.272  Sum_probs=62.2

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-------CchhHHHhHHHHHHHHhhcC-CCeE
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTR-LPLV  235 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~~~-~p~i  235 (324)
                      .+..+.||||||+.++..      .+...  ...+|++++|||+..+.       ..+..     ..+......+ .|+|
T Consensus        75 ~~~~i~liDtpG~~~~~~------~~~~~--~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ii  141 (219)
T cd01883          75 EKYRFTILDAPGHRDFVP------NMITG--ASQADVAVLVVDARKGEFEAGFEKGGQTR-----EHALLARTLGVKQLI  141 (219)
T ss_pred             CCeEEEEEECCChHHHHH------HHHHH--hhhCCEEEEEEECCCCccccccccccchH-----HHHHHHHHcCCCeEE
Confidence            467899999999866521      11111  13479999999998742       22221     1112223344 6889


Q ss_pred             EEeeccccCCh----HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChH
Q 020549          236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       236 lv~NK~Dl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~  302 (324)
                      +|+||+|+...    .......+.+..+.+.+                   .+ ....+++++||++|.|++
T Consensus       142 ivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~-------------------~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         142 VAVNKMDDVTVNWSEERYDEIKKELSPFLKKV-------------------GYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             EEEEccccccccccHHHHHHHHHHHHHHHHHc-------------------CCCcCCceEEEeecCcCCCCC
Confidence            99999999842    22222222222111110                   01 013689999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.69  E-value=4.5e-16  Score=147.53  Aligned_cols=116  Identities=14%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl  243 (324)
                      ..+.|+||||+++|..      .+...+  ..+|++++|||+.++ ..+++.  +   ++..+...++ ++|+|+||+|+
T Consensus       117 ~~i~~IDtPGH~~fi~------~m~~g~--~~~D~alLVVda~~g~~~~qT~--e---hl~i~~~lgi~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGHDILMA------TMLNGA--AVMDAALLLIAANESCPQPQTS--E---HLAAVEIMKLKHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCccchhhH--H---HHHHHHHcCCCcEEEEEecccc
Confidence            4688999999765411      121111  356999999999986 455431  1   1233334555 57899999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ++.+...+..+++..+.+.                    .+....+++++||++|.|++.|++.|.+.++.
T Consensus       184 v~~~~~~~~~~ei~~~l~~--------------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        184 VKEAQAQDQYEEIRNFVKG--------------------TIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             cCHHHHHHHHHHHHHHHHh--------------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            9765544444444322211                    11246799999999999999999999976653

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=4.6e-17  Score=128.05  Aligned_cols=172  Identities=21%  Similarity=0.316  Sum_probs=108.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcH-HHHHHHHHHcCCCCCCccccccccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDT-IRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +++..+|.+|+||||++-++....|......++ +.|             .|.. +.+.      .-+++++- .     
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV-GID-------------FreKrvvY~------s~gp~g~g-r-----   63 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV-GID-------------FREKRVVYN------SSGPGGGG-R-----   63 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEe-ecc-------------cccceEEEe------ccCCCCCC-c-----
Confidence            456788999999999999999888876554433 222             1111 0000      00111110 0     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    ...+.+++|||+||++|  ++    .....++.+..-+++|.+.+..++.....|...+...  ..
T Consensus        64 --------------~~rihLQlWDTAGQERF--RS----LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h--AY  121 (219)
T KOG0081|consen   64 --------------GQRIHLQLWDTAGQERF--RS----LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH--AY  121 (219)
T ss_pred             --------------ceEEEEeeeccccHHHH--HH----HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh--hc
Confidence                          23567899999999998  22    2222334455678899998888887777775544322  22


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+-.+|+++||+|+.+...+.+.  +..              .|++.       |  +.|++++||.+|.||++..+.|
T Consensus       122 cE~PDivlcGNK~DL~~~R~Vs~~--qa~--------------~La~k-------y--glPYfETSA~tg~Nv~kave~L  176 (219)
T KOG0081|consen  122 CENPDIVLCGNKADLEDQRVVSED--QAA--------------ALADK-------Y--GLPYFETSACTGTNVEKAVELL  176 (219)
T ss_pred             cCCCCEEEEcCccchhhhhhhhHH--HHH--------------HHHHH-------h--CCCeeeeccccCcCHHHHHHHH
Confidence            345567889999999876533211  111              12222       1  5899999999999999988888


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      ...+.+
T Consensus       177 ldlvM~  182 (219)
T KOG0081|consen  177 LDLVMK  182 (219)
T ss_pred             HHHHHH
Confidence            777654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.68  E-value=8.9e-16  Score=132.82  Aligned_cols=176  Identities=24%  Similarity=0.233  Sum_probs=104.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+...+.+++.+..+.....+..                                  
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----------------------------------   51 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR----------------------------------   51 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC----------------------------------
Confidence            7899999999999999999999999887766664444333211111                                  


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCc-hhHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANP-MTFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~-~~~~~~~~~~~~~  226 (324)
                                    ...++.+|||+|+.++.      ..+..+..  .++.+++++|...  +... ...|...   +..
T Consensus        52 --------------~~~~~~~~Dt~gq~~~~------~~~~~y~~--~~~~~l~~~d~~~~~~~~~~~~~~~~~---l~~  106 (219)
T COG1100          52 --------------RNIKLQLWDTAGQEEYR------SLRPEYYR--GANGILIVYDSTLRESSDELTEEWLEE---LRE  106 (219)
T ss_pred             --------------CEEEEEeecCCCHHHHH------HHHHHHhc--CCCEEEEEEecccchhhhHHHHHHHHH---HHH
Confidence                          13468899999998862      12222222  3456666666654  2222 2234322   233


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc--cCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV--SGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~--~g~gv~~l  304 (324)
                      ......|+++|.||+|+...............      +    ...+................++++||+  ++.||.++
T Consensus       107 ~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~  176 (219)
T COG1100         107 LAPDDVPILLVGNKIDLFDEQSSSEEILNQLN------R----EVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL  176 (219)
T ss_pred             hCCCCceEEEEecccccccchhHHHHHHhhhh------c----CcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHH
Confidence            33346999999999999876432211111000      0    000000000000011112338999999  99999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      |..+...+..
T Consensus       177 ~~~~~~~~~~  186 (219)
T COG1100         177 FKELLRKLLE  186 (219)
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.68  E-value=7.5e-16  Score=151.11  Aligned_cols=113  Identities=22%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||+.+|..      .+.+.++  .+|.+++|+|+..+...++..     .+......++|+|+|+||+|+.
T Consensus        73 ~~~lnLiDTPGh~dF~~------~v~~sl~--~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~  139 (600)
T PRK05433         73 TYILNLIDTPGHVDFSY------EVSRSLA--ACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP  139 (600)
T ss_pred             cEEEEEEECCCcHHHHH------HHHHHHH--HCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence            56789999999988732      2222332  368999999999887665421     1122334689999999999986


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      .... ....+++.   +              .++      ....+++++||++|.|+++|++.|.+.++.
T Consensus       140 ~a~~-~~v~~ei~---~--------------~lg------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        140 AADP-ERVKQEIE---D--------------VIG------IDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             cccH-HHHHHHHH---H--------------HhC------CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            5321 11111221   0              000      112358999999999999999999998864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.68  E-value=1.9e-16  Score=157.24  Aligned_cols=107  Identities=20%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D  242 (324)
                      .+.++.|+||||+++|..      .+...  ...+|++++|||+..+..+++.-     .+..+...+ .++|+|+||+|
T Consensus       102 ~~~~~~liDtPG~~~f~~------~~~~~--~~~aD~~llVvda~~g~~~~t~e-----~~~~~~~~~~~~iivvvNK~D  168 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTR------NMVTG--ASTADLAIILVDARKGVLTQTRR-----HSFIASLLGIRHVVLAVNKMD  168 (632)
T ss_pred             CCceEEEEECCChHHHHH------HHHHH--HHhCCEEEEEEECCCCccccCHH-----HHHHHHHhCCCeEEEEEEecc
Confidence            366899999999766411      12111  24579999999999887765421     112233334 46788999999


Q ss_pred             cCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          243 VAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       243 l~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +++  .+...+...++..+.+.+                    .+...+++|+||++|.|+++
T Consensus       169 ~~~~~~~~~~~i~~~i~~~~~~~--------------------~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        169 LVDYDQEVFDEIVADYRAFAAKL--------------------GLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             cccchhHHHHHHHHHHHHHHHHc--------------------CCCCccEEEEecccCCCccc
Confidence            985  222222222222221110                    12346799999999999984

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.8e-16  Score=121.25  Aligned_cols=164  Identities=18%  Similarity=0.255  Sum_probs=106.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++.+|+|.-|+|||.|+..+...+|....        |......+++.+                      +..+   
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadc--------phtigvefgtri----------------------ievs---   56 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--------PHTIGVEFGTRI----------------------IEVS---   56 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcC--------CcccceecceeE----------------------EEec---
Confidence            3578999999999999999999988775321        111111222210                      0111   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     +..++++||||+||++|.      .....+.+.+...+.||.|.-+........|   +...+.+
T Consensus        57 ---------------gqkiklqiwdtagqerfr------avtrsyyrgaagalmvyditrrstynhlssw---l~dar~l  112 (215)
T KOG0097|consen   57 ---------------GQKIKLQIWDTAGQERFR------AVTRSYYRGAAGALMVYDITRRSTYNHLSSW---LTDARNL  112 (215)
T ss_pred             ---------------CcEEEEEEeecccHHHHH------HHHHHHhccccceeEEEEehhhhhhhhHHHH---Hhhhhcc
Confidence                           446789999999999972      2334445555456778888777666666666   3344556


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+..+++++||.|+.....+  ..++..              .++++         .+..++++||++|.||++.|-.
T Consensus       113 tnpnt~i~lignkadle~qrdv--~yeeak--------------~faee---------ngl~fle~saktg~nvedafle  167 (215)
T KOG0097|consen  113 TNPNTVIFLIGNKADLESQRDV--TYEEAK--------------EFAEE---------NGLMFLEASAKTGQNVEDAFLE  167 (215)
T ss_pred             CCCceEEEEecchhhhhhcccC--cHHHHH--------------HHHhh---------cCeEEEEecccccCcHHHHHHH
Confidence            6677888999999999765432  111111              11111         2467889999999999998877


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      ..+.+.
T Consensus       168 ~akkiy  173 (215)
T KOG0097|consen  168 TAKKIY  173 (215)
T ss_pred             HHHHHH
Confidence            666554

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=6.8e-16  Score=145.45  Aligned_cols=106  Identities=17%  Similarity=0.291  Sum_probs=65.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl  243 (324)
                      +.++.||||||+++|..      .+...+  ..+|++++|||+..++.+++...     +..+...+. ++|+|+||+|+
T Consensus        79 ~~~~~liDtPGh~~f~~------~~~~~~--~~aD~allVVda~~G~~~qt~~~-----~~~~~~~~~~~iivviNK~D~  145 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTR------NMATGA--STADLAVLLVDARKGVLEQTRRH-----SYIASLLGIRHVVLAVNKMDL  145 (406)
T ss_pred             CeEEEEEeCCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCCccccHHH-----HHHHHHcCCCcEEEEEEeccc
Confidence            56889999999876521      122211  35799999999999987765321     122333344 57889999999


Q ss_pred             CChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          244 AQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       244 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      ...+  ...+..+.+..+.+.+                   . +...+++++||++|+|+++
T Consensus       146 ~~~~~~~~~~i~~~~~~~~~~~-------------------~-~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       146 VDYDEEVFENIKKDYLAFAEQL-------------------G-FRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ccchHHHHHHHHHHHHHHHHHc-------------------C-CCCccEEEeecccCCCCcc
Confidence            8532  1112222222111110                   1 1246899999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.67  E-value=6.6e-16  Score=145.09  Aligned_cols=117  Identities=18%  Similarity=0.215  Sum_probs=74.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeE-EEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl  243 (324)
                      +.++.|+||||+.+|..      .+...  ...+|++++|||+..+...++     ...+..+...++|++ +++||+|+
T Consensus        74 ~~~i~~iDtPG~~~f~~------~~~~~--~~~aD~~llVVDa~~g~~~qt-----~~~~~~~~~~g~p~iiVvvNK~D~  140 (396)
T PRK00049         74 KRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFLNKCDM  140 (396)
T ss_pred             CeEEEEEECCCHHHHHH------HHHhh--hccCCEEEEEEECCCCCchHH-----HHHHHHHHHcCCCEEEEEEeecCC
Confidence            56789999999765411      11111  145799999999998876654     222344556789986 58999999


Q ss_pred             CChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCC----------ChHHHHHHHHHH
Q 020549          244 AQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGA----------GIEAYFKAVEES  311 (324)
Q Consensus       244 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~----------gv~~l~~~i~~~  311 (324)
                      .+.+...+ ...++..+...+                   .+ ....+++++||++|.          |+..|++.|...
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~-------------------~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        141 VDDEELLELVEMEVRELLSKY-------------------DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             cchHHHHHHHHHHHHHHHHhc-------------------CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            86433221 122232221111                   11 124789999999975          577888888876


Q ss_pred             HH
Q 020549          312 AQ  313 (324)
Q Consensus       312 ~~  313 (324)
                      ++
T Consensus       202 ~~  203 (396)
T PRK00049        202 IP  203 (396)
T ss_pred             CC
Confidence            54

>TIGR00101 ureG urease accessory protein UreG

Probab=99.67  E-value=1.2e-15  Score=129.96  Aligned_cols=189  Identities=16%  Similarity=0.141  Sum_probs=102.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHH-HHHHH--HHcCCCCCCcccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR-YKEVM--KQFNLGPNGGILTSL  145 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~  145 (324)
                      +.+|+|+|++|+|||||++++++...... .+.++..+....       .+ ..... ..-+.  ....+..+++.+|..
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~-~~~~~~~d~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQKY-QLAVITNDIYTQ-------ED-AEFLVKNSALPPERILGVETGGCPHTAI   71 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcCC-cEEEEeCCcCCh-------hH-HHHHHHcCCCCcCceehhhcCCCcccee
Confidence            46899999999999999999998754432 344443333210       00 00000 00000  011123445566543


Q ss_pred             cccC-hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          146 NLFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~-~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      ..-. .......... ......++++++|.|..-..   ...    .    ..++.++.|+|+.++.......       
T Consensus        72 ~~~~~~~~~~L~~l~-~~~~~~D~iiIEt~G~~l~~---~~~----~----~l~~~~i~vvD~~~~~~~~~~~-------  132 (199)
T TIGR00101        72 REDASMNLEAVAEME-ARFPPLEMVFIESGGDNLSA---TFS----P----ELADLTIFVIDVAAGDKIPRKG-------  132 (199)
T ss_pred             ccCHHHHHHHHHHHH-hcCCCCCEEEEECCCCCccc---ccc----h----hhhCcEEEEEEcchhhhhhhhh-------
Confidence            2111 1111112221 12236899999999942110   000    0    1136789999987654422111       


Q ss_pred             HHHhhcCCCeEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                        ..+....-++++||+|+.+.  .......+.++                         .+.+..+++++||++|+|++
T Consensus       133 --~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi~  185 (199)
T TIGR00101       133 --GPGITRSDLLVINKIDLAPMVGADLGVMERDAK-------------------------KMRGEKPFIFTNLKTKEGLD  185 (199)
T ss_pred             --HhHhhhccEEEEEhhhccccccccHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCHH
Confidence              11223344999999999852  21211122222                         33457899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          303 AYFKAVEESA  312 (324)
Q Consensus       303 ~l~~~i~~~~  312 (324)
                      +++++|.++.
T Consensus       186 el~~~i~~~~  195 (199)
T TIGR00101       186 TVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHhhc
Confidence            9999998653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.3e-16  Score=146.78  Aligned_cols=175  Identities=22%  Similarity=0.181  Sum_probs=111.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+.+..|+|+|+||||||||+|+|++....+            |+..+++|    ||-+...              +.  
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI------------VSpv~GTT----RDaiea~--------------v~--  312 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSI------------VSPVPGTT----RDAIEAQ--------------VT--  312 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceE------------eCCCCCcc----hhhheeE--------------ee--
Confidence            4567899999999999999999999987764            78888888    6554210              00  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchh-HHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMT-FMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~-~~~~~~~~  223 (324)
                                       ..++.+.|.||+|+.+-.........+.+..++ ..+|++++|||+.++....+ .+...+..
T Consensus       313 -----------------~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~  375 (531)
T KOG1191|consen  313 -----------------VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILET  375 (531)
T ss_pred             -----------------cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHH
Confidence                             237899999999998721111122223333333 45799999999977665544 22222322


Q ss_pred             HHHHhh------cCCCeEEEeeccccCChH-hHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc-eeeec
Q 020549          224 CSILYK------TRLPLVLAFNKTDVAQHE-FALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK-SVGVS  294 (324)
Q Consensus       224 ~~~~~~------~~~p~ilv~NK~Dl~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-iv~vS  294 (324)
                      ......      ...|+++|.||+|+..+- .... ......   +                     ......+ .+++|
T Consensus       376 ~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~---~---------------------~~~~~~~i~~~vs  431 (531)
T KOG1191|consen  376 EGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS---A---------------------EGRSVFPIVVEVS  431 (531)
T ss_pred             hccceEEEeccccccceEEEechhhccCccccccCCceeccc---c---------------------ccCcccceEEEee
Confidence            211111      237889999999998762 1110 000000   0                     0011234 45599


Q ss_pred             cccCCChHHHHHHHHHHHH
Q 020549          295 SVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       295 A~~g~gv~~l~~~i~~~~~  313 (324)
                      |++++|++.|...|.+.+.
T Consensus       432 ~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  432 CTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             echhhhHHHHHHHHHHHHH
Confidence            9999999999999988654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.67  E-value=2.3e-16  Score=135.89  Aligned_cols=202  Identities=18%  Similarity=0.279  Sum_probs=112.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC-Cccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTSLN  146 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  146 (324)
                      +..+|+|.|+||||||||+++|.......+.++.++..||.. .++++.-.  -|+++..+....-+.... ..---+.-
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS-p~tGGAlL--GDRiRM~~~~~d~~vfIRS~atRG~lG  104 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS-PFTGGALL--GDRIRMQELSRDPGVFIRSMATRGSLG  104 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG-GCC---SS----GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC-CCCCCccc--ccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence            567899999999999999999999988888999999999854 34443322  344433322211110000 00000111


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                      .++......+..+.+  .+++++|++|.|..+.-      ..+     ...+|.+++|+-...+-.-+..-..+++    
T Consensus       105 Gls~~t~~~v~ll~a--aG~D~IiiETVGvGQsE------~~I-----~~~aD~~v~v~~Pg~GD~iQ~~KaGimE----  167 (266)
T PF03308_consen  105 GLSRATRDAVRLLDA--AGFDVIIIETVGVGQSE------VDI-----ADMADTVVLVLVPGLGDEIQAIKAGIME----  167 (266)
T ss_dssp             HHHHHHHHHHHHHHH--TT-SEEEEEEESSSTHH------HHH-----HTTSSEEEEEEESSTCCCCCTB-TTHHH----
T ss_pred             CccHhHHHHHHHHHH--cCCCEEEEeCCCCCccH------HHH-----HHhcCeEEEEecCCCccHHHHHhhhhhh----
Confidence            244455555555553  37899999999876531      111     1346999999987666555544444442    


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                           ++-|+|+||+|+...+..   ..+++..........           .   .|  ..|++.+||.+|.||++|++
T Consensus       168 -----iaDi~vVNKaD~~gA~~~---~~~l~~~l~l~~~~~-----------~---~W--~ppV~~tsA~~~~Gi~eL~~  223 (266)
T PF03308_consen  168 -----IADIFVVNKADRPGADRT---VRDLRSMLHLLRERE-----------D---GW--RPPVLKTSALEGEGIDELWE  223 (266)
T ss_dssp             -----H-SEEEEE--SHHHHHHH---HHHHHHHHHHCSTSC-----------T---SB----EEEEEBTTTTBSHHHHHH
T ss_pred             -----hccEEEEeCCChHHHHHH---HHHHHHHHhhccccc-----------c---CC--CCCEEEEEeCCCCCHHHHHH
Confidence                 345999999996544432   222222111100000           0   11  25899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|.++..
T Consensus       224 ~i~~~~~  230 (266)
T PF03308_consen  224 AIDEHRD  230 (266)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.67  E-value=5.6e-16  Score=145.70  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeE-EEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl  243 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|+|+.++...++.     ..+..+...++|.+ +|+||+|+
T Consensus        74 ~~~~~liDtpGh~~f~~------~~~~~~--~~~D~~ilVvda~~g~~~qt~-----e~l~~~~~~gi~~iIvvvNK~Dl  140 (394)
T TIGR00485        74 NRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVSATDGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM  140 (394)
T ss_pred             CEEEEEEECCchHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEeccc
Confidence            55789999999877521      121111  356999999999988766652     22234555688876 58999999


Q ss_pred             CChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCC
Q 020549          244 AQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGA  299 (324)
Q Consensus       244 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~  299 (324)
                      .+.+...+ ..+++..+.+..                   .+. ..++++++||++|.
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~-------------------~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       141 VDDEELLELVEMEVRELLSEY-------------------DFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHhc-------------------CCCccCccEEECcccccc
Confidence            87543222 112233222111                   011 12789999999985

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.67  E-value=7.3e-16  Score=150.76  Aligned_cols=122  Identities=18%  Similarity=0.204  Sum_probs=79.1

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +.+.++.||||||+.+|..      .+...+  ..+|.+++|||+.++...++.     ..+..+...++|+|+|+||+|
T Consensus        61 ~~~~kinlIDTPGh~DF~~------ev~~~l--~~aD~alLVVDa~~G~~~qT~-----~~l~~a~~~~ip~IVviNKiD  127 (594)
T TIGR01394        61 YNGTKINIVDTPGHADFGG------EVERVL--GMVDGVLLLVDASEGPMPQTR-----FVLKKALELGLKPIVVINKID  127 (594)
T ss_pred             ECCEEEEEEECCCHHHHHH------HHHHHH--HhCCEEEEEEeCCCCCcHHHH-----HHHHHHHHCCCCEEEEEECCC
Confidence            3467899999999877621      222222  236999999999988766542     122445567899999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC----------ChHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESA  312 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~----------gv~~l~~~i~~~~  312 (324)
                      +.... ..+...++..+...+...                .-....+++++||++|.          |++.||+.|.+.+
T Consensus       128 ~~~a~-~~~v~~ei~~l~~~~g~~----------------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       128 RPSAR-PDEVVDEVFDLFAELGAD----------------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             CCCcC-HHHHHHHHHHHHHhhccc----------------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            87532 112223333222111000                00013689999999996          8999999999988


Q ss_pred             HH
Q 020549          313 QE  314 (324)
Q Consensus       313 ~~  314 (324)
                      |.
T Consensus       191 P~  192 (594)
T TIGR01394       191 PA  192 (594)
T ss_pred             CC
Confidence            64

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.67  E-value=1.9e-16  Score=134.21  Aligned_cols=164  Identities=13%  Similarity=0.168  Sum_probs=108.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|.+|+|||+|+.++.+..|...+.+++-      +.+.....++                             
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie------d~y~k~~~v~-----------------------------   47 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE------DSYRKELTVD-----------------------------   47 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc------ccceEEEEEC-----------------------------
Confidence            46899999999999999999999988876544331      1111111110                             


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    +....+.|+||+|++++.      .....+++...+-++||.|+.+.+++....+...+  .+...
T Consensus        48 --------------~~~~~l~ilDt~g~~~~~------~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I--~r~~~  105 (196)
T KOG0395|consen   48 --------------GEVCMLEILDTAGQEEFS------AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQI--LRVKG  105 (196)
T ss_pred             --------------CEEEEEEEEcCCCcccCh------HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHH--HHhhC
Confidence                          224567899999988762      12223344455568899999988887776554433  23333


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ...+|+++|+||+|+.....+.  .++-..+.              .       .|  .++++++||+...+|+++|..|
T Consensus       106 ~~~~PivlVGNK~Dl~~~R~V~--~eeg~~la--------------~-------~~--~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen  106 RDDVPIILVGNKCDLERERQVS--EEEGKALA--------------R-------SW--GCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             cCCCCEEEEEEcccchhccccC--HHHHHHHH--------------H-------hc--CCcEEEeeccCCcCHHHHHHHH
Confidence            4568999999999998642210  01111111              1       11  3569999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            997764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.66  E-value=6.2e-16  Score=124.16  Aligned_cols=113  Identities=16%  Similarity=0.105  Sum_probs=69.9

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.+||+||+.......      ...  ...+|.+++|+|........................+.|+++|+||+|+.
T Consensus        44 ~~~~~l~D~~g~~~~~~~~------~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~  115 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLR------RLY--YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP  115 (157)
T ss_pred             EEEEEEEecCChHHHHhHH------HHH--hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence            4578999999976642111      111  13468999999997644322211000112233455789999999999998


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ......... .....                       ......+++++||+++.|++++++.|.
T Consensus       116 ~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         116 EERVVSEEE-LAEQL-----------------------AKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cccchHHHH-HHHHH-----------------------HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            654322111 00000                       112457899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.66  E-value=2.3e-16  Score=126.57  Aligned_cols=166  Identities=17%  Similarity=0.207  Sum_probs=112.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      -...++++|+|..++||||++.+++...|..++.-+|     +++       +                           
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI-----gvd-------f---------------------------   57 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI-----GVD-------F---------------------------   57 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhcccccccccccc-----chh-------h---------------------------
Confidence            3467899999999999999999999988776554332     110       0                           


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                               ....+........+.+|||+||++|      .++...+.+.+.+.++||.-..+.+++....|.+...   
T Consensus        58 ---------lerqi~v~~Edvr~mlWdtagqeEf------DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~---  119 (246)
T KOG4252|consen   58 ---------LERQIKVLIEDVRSMLWDTAGQEEF------DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQ---  119 (246)
T ss_pred             ---------hhHHHHhhHHHHHHHHHHhccchhH------HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHH---
Confidence                     0011112233456679999999987      2234445566667788888888888876666654432   


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                       .....+|.++|-||+|++++..+..  ...+.+.+.                       ...+++.+|++...||..+|
T Consensus       120 -~e~~~IPtV~vqNKIDlveds~~~~--~evE~lak~-----------------------l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen  120 -KETERIPTVFVQNKIDLVEDSQMDK--GEVEGLAKK-----------------------LHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             -HHhccCCeEEeeccchhhHhhhcch--HHHHHHHHH-----------------------hhhhhhhhhhhhhhhhHHHH
Confidence             2235799999999999998764311  112212111                       13456779999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      ..|++.+..
T Consensus       174 ~YLaeK~~q  182 (246)
T KOG4252|consen  174 AYLAEKLTQ  182 (246)
T ss_pred             HHHHHHHHH
Confidence            999987654

>PLN03126 Elongation factor Tu; Provisional

Probab=99.65  E-value=1.1e-15  Score=145.86  Aligned_cols=104  Identities=19%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|||+..+...++     ..++..+...++| +|+|+||+|+
T Consensus       143 ~~~i~liDtPGh~~f~~------~~~~g~--~~aD~ailVVda~~G~~~qt-----~e~~~~~~~~gi~~iIvvvNK~Dl  209 (478)
T PLN03126        143 NRHYAHVDCPGHADYVK------NMITGA--AQMDGAILVVSGADGPMPQT-----KEHILLAKQVGVPNMVVFLNKQDQ  209 (478)
T ss_pred             CcEEEEEECCCHHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCeEEEEEecccc
Confidence            56889999999877522      222222  34799999999999877665     2223445567888 6789999999


Q ss_pred             CChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC
Q 020549          244 AQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG  300 (324)
Q Consensus       244 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g  300 (324)
                      ++.+...+.. +++..+.+.+                   .|. ...+++++||.+|.+
T Consensus       210 ~~~~~~~~~i~~~i~~~l~~~-------------------g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        210 VDDEELLELVELEVRELLSSY-------------------EFPGDDIPIISGSALLALE  249 (478)
T ss_pred             cCHHHHHHHHHHHHHHHHHhc-------------------CCCcCcceEEEEEcccccc
Confidence            8754332222 2333222211                   111 257899999999853

>cd04167 Snu114p Snu114p subfamily

Probab=99.65  E-value=2e-15  Score=130.36  Aligned_cols=67  Identities=25%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||+.++..      .....+  ..+|++++|+|+.++.....     ...+......++|+++|+||+|++
T Consensus        70 ~~~i~iiDtpG~~~f~~------~~~~~~--~~aD~~llVvD~~~~~~~~~-----~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          70 SYLFNIIDTPGHVNFMD------EVAAAL--RLSDGVVLVVDVVEGVTSNT-----ERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEEEECCCCcchHH------HHHHHH--HhCCEEEEEEECCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcccC
Confidence            46789999999887621      111222  24689999999987764432     111123334569999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.65  E-value=3.5e-15  Score=141.85  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC---CCchhHHHhHHHHHHHHhhcC-CCeEEEee
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS---ANPMTFMSNMLYACSILYKTR-LPLVLAFN  239 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~---~~~~~~~~~~~~~~~~~~~~~-~p~ilv~N  239 (324)
                      .+..+.||||||+.+|..      .+...  ...+|++++|+|+..+   ...+..+  .+   ......+ .|+|+|+|
T Consensus        83 ~~~~i~iiDtpGh~~f~~------~~~~~--~~~aD~~ilVvDa~~~~~~~~~~t~~--~~---~~~~~~~~~~iIVviN  149 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIK------NMITG--ASQADAAVLVVAVGDGEFEVQPQTRE--HA---FLARTLGINQLIVAIN  149 (426)
T ss_pred             CCeEEEEEECCCHHHHHH------HHHhh--hhhCCEEEEEEECCCCCcccCCchHH--HH---HHHHHcCCCeEEEEEE
Confidence            367889999999766521      11111  1347999999999887   3333221  11   1222233 46889999


Q ss_pred             ccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549          240 KTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       240 K~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~  303 (324)
                      |+|+.+  .+......+++..+.+..                   .+. ...+++++||++|.|+++
T Consensus       150 K~Dl~~~~~~~~~~~~~ei~~~~~~~-------------------g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       150 KMDSVNYDEEEFEAIKKEVSNLIKKV-------------------GYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ChhccCccHHHHHHHHHHHHHHHHHc-------------------CCCcccceEEEeeccccccccc
Confidence            999974  222222223333222111                   011 236899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.64  E-value=2.8e-15  Score=144.84  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+..+.||||||+.+|..      .....+  ..+|.+|+|+|+..+...+.     ...+......++|+++++||+|+
T Consensus        77 ~~~~inliDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~~t-----~~l~~~~~~~~iPiiv~iNK~D~  143 (526)
T PRK00741         77 RDCLINLLDTPGHEDFSE------DTYRTL--TAVDSALMVIDAAKGVEPQT-----RKLMEVCRLRDTPIFTFINKLDR  143 (526)
T ss_pred             CCEEEEEEECCCchhhHH------HHHHHH--HHCCEEEEEEecCCCCCHHH-----HHHHHHHHhcCCCEEEEEECCcc
Confidence            367899999999877621      122222  23699999999998875543     11223445578999999999998


Q ss_pred             CChH
Q 020549          244 AQHE  247 (324)
Q Consensus       244 ~~~~  247 (324)
                      ....
T Consensus       144 ~~a~  147 (526)
T PRK00741        144 DGRE  147 (526)
T ss_pred             cccC
Confidence            7643

>PRK10218 GTP-binding protein; Provisional

Probab=99.64  E-value=3.6e-15  Score=145.80  Aligned_cols=121  Identities=16%  Similarity=0.192  Sum_probs=78.0

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+..+.||||||+.+|..      .+...+  ..+|.+++|+|+.++...++..     .+..+...++|.++|+||+|+
T Consensus        66 ~~~~inliDTPG~~df~~------~v~~~l--~~aDg~ILVVDa~~G~~~qt~~-----~l~~a~~~gip~IVviNKiD~  132 (607)
T PRK10218         66 NDYRINIVDTPGHADFGG------EVERVM--SMVDSVLLVVDAFDGPMPQTRF-----VTKKAFAYGLKPIVVINKVDR  132 (607)
T ss_pred             CCEEEEEEECCCcchhHH------HHHHHH--HhCCEEEEEEecccCccHHHHH-----HHHHHHHcCCCEEEEEECcCC
Confidence            467899999999988721      122222  3469999999999887655411     123445578999999999998


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC----------ChHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA----------GIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~----------gv~~l~~~i~~~~~  313 (324)
                      .... ......++..+...+              ...  ......|++++||++|.          |+..|++.|.+.+|
T Consensus       133 ~~a~-~~~vl~ei~~l~~~l--------------~~~--~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        133 PGAR-PDWVVDQVFDLFVNL--------------DAT--DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCCc-hhHHHHHHHHHHhcc--------------Ccc--ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            7532 112223333221111              000  00123789999999998          68999999999886


Q ss_pred             H
Q 020549          314 E  314 (324)
Q Consensus       314 ~  314 (324)
                      .
T Consensus       196 ~  196 (607)
T PRK10218        196 A  196 (607)
T ss_pred             C
Confidence            4

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=5.3e-15  Score=148.24  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+.++.||||||+.++..      .....+  ..+|++++|+|+..+...++.     ..+..+...++|+++|+||+|+
T Consensus        73 ~~~~i~liDTPG~~~~~~------~~~~~l--~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~p~ivviNK~D~  139 (689)
T TIGR00484        73 KGHRINIIDTPGHVDFTV------EVERSL--RVLDGAVAVLDAVGGVQPQSE-----TVWRQANRYEVPRIAFVNKMDK  139 (689)
T ss_pred             CCeEEEEEECCCCcchhH------HHHHHH--HHhCEEEEEEeCCCCCChhHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence            467899999999987621      122222  235999999999988766542     1223455678999999999999


Q ss_pred             CChH
Q 020549          244 AQHE  247 (324)
Q Consensus       244 ~~~~  247 (324)
                      ....
T Consensus       140 ~~~~  143 (689)
T TIGR00484       140 TGAN  143 (689)
T ss_pred             CCCC
Confidence            8643

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.63  E-value=1.8e-15  Score=143.77  Aligned_cols=108  Identities=13%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC-------chhHHHhHHHHHHHHhhcCCCe-E
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLPL-V  235 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p~-i  235 (324)
                      .+..+.|+||||+.+|..      .+...  ...+|++++|||+..+..       .++     ..++..+...++|. |
T Consensus        83 ~~~~i~lIDtPGh~~f~~------~~~~g--~~~aD~ailVVda~~G~~e~~~~~~~qT-----~eh~~~~~~~gi~~ii  149 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIK------NMITG--TSQADVAILVVASTAGEFEAGISKDGQT-----REHALLAFTLGVKQMI  149 (446)
T ss_pred             CCeEEEEEECCChHHHHH------HHHHh--hhhcCEEEEEEEcCCCceecccCCCccH-----HHHHHHHHHcCCCeEE
Confidence            367889999999877521      11111  145799999999998863       232     22334566678885 6


Q ss_pred             EEeeccccCC----hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549          236 LAFNKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       236 lv~NK~Dl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~  303 (324)
                      +|+||+|+..    .++..+..+++..+...+                   .+. ...++||+||++|+|+.+
T Consensus       150 v~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~-------------------g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        150 VCINKMDDKTVNYSQERYDEIKKEVSAYLKKV-------------------GYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             EEEEccccccchhhHHHHHHHHHHHHHHHHhc-------------------CCCcccceEEEeecccCCCccc
Confidence            8999999532    233333333333222111                   111 247899999999999964

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.63  E-value=3.7e-15  Score=135.19  Aligned_cols=60  Identities=18%  Similarity=0.167  Sum_probs=44.0

Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH-HHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-AVE  309 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~-~i~  309 (324)
                      .+|+|+|+||+|+......   .+.+.                         ....+.+++++||+.+.|+++|.+ .|.
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~---~~~l~-------------------------~~~~~~~iI~iSA~~e~~L~~L~~~~i~  265 (318)
T cd01899         214 SKPMVIAANKADIPDAENN---ISKLR-------------------------LKYPDEIVVPTSAEAELALRRAAKQGLI  265 (318)
T ss_pred             CCcEEEEEEHHHccChHHH---HHHHH-------------------------hhCCCCeEEEEeCcccccHHHHHHhhHH
Confidence            4799999999998654422   11111                         112356899999999999999998 699


Q ss_pred             HHHHHHHHh
Q 020549          310 ESAQEFMET  318 (324)
Q Consensus       310 ~~~~~~~~~  318 (324)
                      +++|++++.
T Consensus       266 ~~lPe~~~f  274 (318)
T cd01899         266 KYDPGDSDF  274 (318)
T ss_pred             HhCCCCCCc
Confidence            999876644

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.63  E-value=8.7e-15  Score=126.48  Aligned_cols=67  Identities=25%  Similarity=0.282  Sum_probs=47.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||+++|..      .+...+  ..+|.+++|+|+.++...+.  ..   .+......++|+|+|+||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~------~~~~~l--~~aD~~ilVvD~~~g~~~~t--~~---~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSS------EVTAAL--RLCDGALVVVDAVEGVCVQT--ET---VLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHH------HHHHHH--HhcCeeEEEEECCCCCCHHH--HH---HHHHHHHcCCCEEEEEECCCcc
Confidence            56788999999988622      222222  33689999999998876544  11   2233445678999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.63  E-value=1e-14  Score=129.25  Aligned_cols=180  Identities=14%  Similarity=0.165  Sum_probs=105.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGI  141 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~  141 (324)
                      ......|.|+|+||||||||++++++...... .+.++..|.+..       .|   .    +.+...+.    ..+||.
T Consensus       101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~-~~~VI~gD~~t~-------~D---a----~rI~~~g~pvvqi~tG~~  165 (290)
T PRK10463        101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSV-PCAVIEGDQQTV-------ND---A----ARIRATGTPAIQVNTGKG  165 (290)
T ss_pred             hcCCeEEEEECCCCCCHHHHHHHHHHHhccCC-CEEEECCCcCcH-------HH---H----HHHHhcCCcEEEecCCCC
Confidence            34678899999999999999999998765443 344443333211       11   1    11222222    234566


Q ss_pred             cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                      |+.   ....+...+..+.  ....+++|+++.|. ..+... .++.           +.-+.+++..++........  
T Consensus       166 Chl---~a~mv~~Al~~L~--~~~~d~liIEnvGnLvcPa~f-dlge-----------~~~v~vlsV~eg~dkplKyp--  226 (290)
T PRK10463        166 CHL---DAQMIADAAPRLP--LDDNGILFIENVGNLVCPASF-DLGE-----------KHKVAVLSVTEGEDKPLKYP--  226 (290)
T ss_pred             CcC---cHHHHHHHHHHHh--hcCCcEEEEECCCCccCCCcc-chhh-----------ceeEEEEECccccccchhcc--
Confidence            653   2233344444444  34679999999995 232110 1111           23346666666643211111  


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g  298 (324)
                             .....+-++|+||+|+++.  .......+.++                         ...++.+++++||++|
T Consensus       227 -------~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr-------------------------~lnp~a~I~~vSA~tG  274 (290)
T PRK10463        227 -------HMFAAASLMLLNKVDLLPYLNFDVEKCIACAR-------------------------EVNPEIEIILISATSG  274 (290)
T ss_pred             -------chhhcCcEEEEEhHHcCcccHHHHHHHHHHHH-------------------------hhCCCCcEEEEECCCC
Confidence                   1134677999999999863  22222222222                         3456789999999999


Q ss_pred             CChHHHHHHHHHH
Q 020549          299 AGIEAYFKAVEES  311 (324)
Q Consensus       299 ~gv~~l~~~i~~~  311 (324)
                      +|++++.++|...
T Consensus       275 eGld~L~~~L~~~  287 (290)
T PRK10463        275 EGMDQWLNWLETQ  287 (290)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998763

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1e-15  Score=142.21  Aligned_cols=179  Identities=16%  Similarity=0.198  Sum_probs=110.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+-..++||-+...|||||..+|+.........                        ..-..+|+.+.+....||.....
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~------------------------~~q~q~LDkl~vERERGITIkaQ  113 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN------------------------IGQEQVLDKLQVERERGITIKAQ  113 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCC------------------------CchhhhhhhhhhhhhcCcEEEee
Confidence            344568999999999999999999874422100                        00012223333333334332100


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                      .-+-.  +     . .+..+.+.++||||+.+|..  ...    +.+  +.|+.+++||||.+|.+.++..     ....
T Consensus       114 tasif--y-----~-~~~~ylLNLIDTPGHvDFs~--EVs----Rsl--aac~G~lLvVDA~qGvqAQT~a-----nf~l  172 (650)
T KOG0462|consen  114 TASIF--Y-----K-DGQSYLLNLIDTPGHVDFSG--EVS----RSL--AACDGALLVVDASQGVQAQTVA-----NFYL  172 (650)
T ss_pred             eeEEE--E-----E-cCCceEEEeecCCCcccccc--eeh----ehh--hhcCceEEEEEcCcCchHHHHH-----HHHH
Confidence            00000  0     0 02347889999999999832  222    222  3368999999999999888622     1123


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+..+|.|+||+|+...+- .....++..+-                       -.+..+++.+|||+|.|++++++
T Consensus       173 Afe~~L~iIpVlNKIDlp~adp-e~V~~q~~~lF-----------------------~~~~~~~i~vSAK~G~~v~~lL~  228 (650)
T KOG0462|consen  173 AFEAGLAIIPVLNKIDLPSADP-ERVENQLFELF-----------------------DIPPAEVIYVSAKTGLNVEELLE  228 (650)
T ss_pred             HHHcCCeEEEeeeccCCCCCCH-HHHHHHHHHHh-----------------------cCCccceEEEEeccCccHHHHHH
Confidence            4457889999999999987531 11111221110                       02346899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      +|++.+|.
T Consensus       229 AII~rVPp  236 (650)
T KOG0462|consen  229 AIIRRVPP  236 (650)
T ss_pred             HHHhhCCC
Confidence            99999864

>PRK00007 elongation factor G; Reviewed

Probab=99.63  E-value=3.3e-15  Score=149.57  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+..+.|+||||+.+|..      .+...+  ..+|++|+|||+..+...++.     ..+..+...++|+|+++||+|+
T Consensus        73 ~~~~~~liDTPG~~~f~~------ev~~al--~~~D~~vlVvda~~g~~~qt~-----~~~~~~~~~~~p~iv~vNK~D~  139 (693)
T PRK00007         73 KDHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVGGVEPQSE-----TVWRQADKYKVPRIAFVNKMDR  139 (693)
T ss_pred             CCeEEEEEeCCCcHHHHH------HHHHHH--HHcCEEEEEEECCCCcchhhH-----HHHHHHHHcCCCEEEEEECCCC
Confidence            467899999999877521      122222  235899999999999877662     2234566778999999999999


Q ss_pred             CChH
Q 020549          244 AQHE  247 (324)
Q Consensus       244 ~~~~  247 (324)
                      ....
T Consensus       140 ~~~~  143 (693)
T PRK00007        140 TGAD  143 (693)
T ss_pred             CCCC
Confidence            8643

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.63  E-value=1e-14  Score=125.32  Aligned_cols=182  Identities=14%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..+.|+++|++|+|||||+++++..... ...+.++..++..       .+|   ...+...-...-...+|++||..  
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~-------~~D---~~~~~~~~~~~~~l~~gcic~~~--   87 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVIT-------KFD---AERLRKYGAPAIQINTGKECHLD--   87 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCC-------ccc---HHHHHHcCCcEEEEcCCCcccCC--
Confidence            4678999999999999999999986432 2355555444421       111   11111100012223456676521  


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                       ...+...+..+.  ..+++++|++|.|. ....   ..         ....+..+.++|...+.....         ..
T Consensus        88 -~~~~~~~l~~~~--~~~~d~IiIEt~G~l~~~~---~~---------~~~~~~~i~Vvd~~~~d~~~~---------~~  143 (207)
T TIGR00073        88 -AHMVAHALEDLP--LDDIDLLFIENVGNLVCPA---DF---------DLGEHMRVVLLSVTEGDDKPL---------KY  143 (207)
T ss_pred             -hHHHHHHHHHhc--cCCCCEEEEecCCCcCCCc---cc---------ccccCeEEEEEecCcccchhh---------hh
Confidence             111212222221  23679999999992 1110   00         011245567788765432211         11


Q ss_pred             HhhcCCCeEEEeeccccCChHh--HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......|.++|+||+|+.+...  .....+.++                         ...+..+++++||++|.|++++
T Consensus       144 ~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~-------------------------~~~~~~~i~~~Sa~~g~gv~~l  198 (207)
T TIGR00073       144 PGMFKEADLIVINKADLAEAVGFDVEKMKADAK-------------------------KINPEAEIILMSLKTGEGLDEW  198 (207)
T ss_pred             HhHHhhCCEEEEEHHHccccchhhHHHHHHHHH-------------------------HhCCCCCEEEEECCCCCCHHHH
Confidence            1224578899999999986421  111211111                         2235689999999999999999


Q ss_pred             HHHHHHH
Q 020549          305 FKAVEES  311 (324)
Q Consensus       305 ~~~i~~~  311 (324)
                      ++.+.++
T Consensus       199 ~~~i~~~  205 (207)
T TIGR00073       199 LEFLEGQ  205 (207)
T ss_pred             HHHHHHh
Confidence            9999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.62  E-value=4.7e-15  Score=126.93  Aligned_cols=184  Identities=17%  Similarity=0.318  Sum_probs=95.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+++|++|||||||+++|.+..+........             .+.                     +...    +..
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-------------~~~---------------------~~~~----~~~   43 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-------------PNV---------------------ATFI----LNS   43 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-------------ecc---------------------eEEE----eec
Confidence            58999999999999999999875543211100             000                     0000    000


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HHH--H
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI--L  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~~--~  227 (324)
                                 ......+.||||||+.++  +    ..+...++.. .+.+|||+|+.............+.. +..  .
T Consensus        44 -----------~~~~~~~~l~D~pG~~~~--~----~~~~~~~~~~-~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~  105 (203)
T cd04105          44 -----------EGKGKKFRLVDVPGHPKL--R----DKLLETLKNS-AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEK  105 (203)
T ss_pred             -----------CCCCceEEEEECCCCHHH--H----HHHHHHHhcc-CCEEEEEEECccchhHHHHHHHHHHHHHHHHhh
Confidence                       012567899999998765  1    1222333322 38999999998753222221111111 111  1


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHH----hHHHHHHHHhcCc-------cchhhHHHHHHH--hHHHHhccCceeeec
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQ----DFEVFQAAISSDH-------SYTSTLTNSLSL--ALDEFYKNLKSVGVS  294 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~----~~~~l~~~~~~~~-------~~~~~l~~~~~~--~~~~~~~~~~iv~vS  294 (324)
                      ...++|+++|+||+|+........+.+    ++..+...-....       .....+...-+.  .+......+.++++|
T Consensus       106 ~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s  185 (203)
T cd04105         106 VKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGS  185 (203)
T ss_pred             ccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeE
Confidence            225799999999999876432222222    2222222111100       000000000000  011111246889999


Q ss_pred             cccCC-ChHHHHHHHHH
Q 020549          295 SVSGA-GIEAYFKAVEE  310 (324)
Q Consensus       295 A~~g~-gv~~l~~~i~~  310 (324)
                      ++.+. |++.+.++|.+
T Consensus       186 ~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         186 VKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             EecCCCChHhHHHHHhh
Confidence            99876 69998888764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=5.6e-15  Score=148.05  Aligned_cols=70  Identities=17%  Similarity=0.205  Sum_probs=50.5

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+.++.||||||+.+|..      .+...+  ..+|++++|||+..+...++.     ..+..+...++|+|+++||+|+
T Consensus        71 ~~~~i~liDTPG~~~f~~------e~~~al--~~~D~~ilVvDa~~g~~~qt~-----~i~~~~~~~~~p~iv~iNK~D~  137 (691)
T PRK12739         71 KGHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVSGVEPQSE-----TVWRQADKYGVPRIVFVNKMDR  137 (691)
T ss_pred             CCEEEEEEcCCCHHHHHH------HHHHHH--HHhCeEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence            467899999999877521      222222  235999999999998876652     2234455678999999999999


Q ss_pred             CCh
Q 020549          244 AQH  246 (324)
Q Consensus       244 ~~~  246 (324)
                      ...
T Consensus       138 ~~~  140 (691)
T PRK12739        138 IGA  140 (691)
T ss_pred             CCC
Confidence            864

>PRK13351 elongation factor G; Reviewed

Probab=99.61  E-value=1.4e-14  Score=145.42  Aligned_cols=70  Identities=21%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+..+.||||||+.+|..      .....+  ..+|++++|+|+..+......     ..+..+...++|+++|+||+|+
T Consensus        71 ~~~~i~liDtPG~~df~~------~~~~~l--~~aD~~ilVvd~~~~~~~~~~-----~~~~~~~~~~~p~iiviNK~D~  137 (687)
T PRK13351         71 DNHRINLIDTPGHIDFTG------EVERSL--RVLDGAVVVFDAVTGVQPQTE-----TVWRQADRYGIPRLIFINKMDR  137 (687)
T ss_pred             CCEEEEEEECCCcHHHHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHhcCCCEEEEEECCCC
Confidence            367899999999877621      122222  235899999999887655431     1223445568999999999999


Q ss_pred             CCh
Q 020549          244 AQH  246 (324)
Q Consensus       244 ~~~  246 (324)
                      ...
T Consensus       138 ~~~  140 (687)
T PRK13351        138 VGA  140 (687)
T ss_pred             CCC
Confidence            865

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=2.2e-15  Score=131.81  Aligned_cols=118  Identities=19%  Similarity=0.235  Sum_probs=85.3

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ..+.|+|.||++-         .|...+.. +.-|.+++||++.+.+... +..+.+..+..+.-  +.+|+|-||+|++
T Consensus        86 R~VSfVDaPGHe~---------LMATMLsGAAlMDgAlLvIaANEpcPQP-QT~EHl~AleIigi--k~iiIvQNKIDlV  153 (415)
T COG5257          86 RRVSFVDAPGHET---------LMATMLSGAALMDGALLVIAANEPCPQP-QTREHLMALEIIGI--KNIIIVQNKIDLV  153 (415)
T ss_pred             EEEEEeeCCchHH---------HHHHHhcchhhhcceEEEEecCCCCCCC-chHHHHHHHhhhcc--ceEEEEeccccee
Confidence            3567999999533         22223322 3458999999998876432 23344444444322  4578999999999


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                      +.++..+.++++..+.+.                    .+.++.||+|+||..+.||+.|+++|.+.++..
T Consensus       154 ~~E~AlE~y~qIk~FvkG--------------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         154 SRERALENYEQIKEFVKG--------------------TVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             cHHHHHHHHHHHHHHhcc--------------------cccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            999887777777765543                    345678999999999999999999999998753

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.60  E-value=6.9e-14  Score=126.76  Aligned_cols=201  Identities=19%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc-
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS-  144 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  144 (324)
                      ...+..|+|+|++|+|||||++.|.......+..+.++..|+.... +.+.-.  .++.+..+    ....+ +..+.+ 
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~-~~~~~~--~~~~~~~~----~~~~~-~~~~~~~  102 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF-TGGSIL--GDRTRMQR----LATDP-GAFIRSM  102 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc-chhhhc--ccchhhhh----cccCC-Cceeeec
Confidence            3457889999999999999999999987777888888888864321 111100  11111111    11001 011111 


Q ss_pred             -----ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHh
Q 020549          145 -----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN  219 (324)
Q Consensus       145 -----~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~  219 (324)
                           ...........+..+.  ..+++++|+||||.....    .  .+.     ..+|.++++.+...+ ......  
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~--~~g~D~viidT~G~~~~e----~--~i~-----~~aD~i~vv~~~~~~-~el~~~--  166 (300)
T TIGR00750       103 PTRGHLGGLSQATRELILLLD--AAGYDVIIVETVGVGQSE----V--DIA-----NMADTFVVVTIPGTG-DDLQGI--  166 (300)
T ss_pred             CccccccchhHHHHHHHHHHH--hCCCCEEEEeCCCCchhh----h--HHH-----HhhceEEEEecCCcc-HHHHHH--
Confidence                 1112223444444444  348999999999965421    0  111     224777777544322 111111  


Q ss_pred             HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccC
Q 020549          220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSG  298 (324)
Q Consensus       220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g  298 (324)
                       .   ..  -.++|.++|+||+|+............+..-...+                 ...... ..+++++||++|
T Consensus       167 -~---~~--l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l-----------------~~~~~~~~~~v~~iSA~~g  223 (300)
T TIGR00750       167 -K---AG--LMEIADIYVVNKADGEGATNVTIARLMLALALEEI-----------------RRREDGWRPPVLTTSAVEG  223 (300)
T ss_pred             -H---HH--HhhhccEEEEEcccccchhHHHHHHHHHHHHHhhc-----------------cccccCCCCCEEEEEccCC
Confidence             1   11  14688899999999987643211111111000000                 000001 146999999999


Q ss_pred             CChHHHHHHHHHHHH
Q 020549          299 AGIEAYFKAVEESAQ  313 (324)
Q Consensus       299 ~gv~~l~~~i~~~~~  313 (324)
                      .|+++|++.|.+...
T Consensus       224 ~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       224 RGIDELWDAIEEHKT  238 (300)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.59  E-value=2.8e-14  Score=137.91  Aligned_cols=69  Identities=19%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+..+.||||||+.+|..      ...+.+  ..+|++|+|+|+..++..+...     .+..+...++|+++++||+|+
T Consensus        78 ~~~~inliDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~~t~~-----l~~~~~~~~~PiivviNKiD~  144 (527)
T TIGR00503        78 RDCLVNLLDTPGHEDFSE------DTYRTL--TAVDNCLMVIDAAKGVETRTRK-----LMEVTRLRDTPIFTFMNKLDR  144 (527)
T ss_pred             CCeEEEEEECCChhhHHH------HHHHHH--HhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEEEEECccc
Confidence            467899999999876521      112222  2369999999999887655311     113344467999999999998


Q ss_pred             CC
Q 020549          244 AQ  245 (324)
Q Consensus       244 ~~  245 (324)
                      ..
T Consensus       145 ~~  146 (527)
T TIGR00503       145 DI  146 (527)
T ss_pred             cC
Confidence            64

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.59  E-value=2.6e-14  Score=133.50  Aligned_cols=63  Identities=17%  Similarity=0.083  Sum_probs=47.3

Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH-HHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA-YFKAVE  309 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~-l~~~i~  309 (324)
                      .+|+|+|+||+|+.....   ....+.                         ++ ++..++++||+.+.+++. +.+.+.
T Consensus       217 ~KPvI~VlNK~D~~~~~~---~l~~i~-------------------------~~-~~~~vvpISA~~e~~l~~~l~~~i~  267 (396)
T PRK09602        217 SKPMVIAANKADLPPAEE---NIERLK-------------------------EE-KYYIVVPTSAEAELALRRAAKAGLI  267 (396)
T ss_pred             CCCEEEEEEchhcccchH---HHHHHH-------------------------hc-CCCcEEEEcchhhhhHHHHHHHhHH
Confidence            489999999999764321   111111                         22 457799999999999999 899999


Q ss_pred             HHHHHHHHhhhcc
Q 020549          310 ESAQEFMETYKYC  322 (324)
Q Consensus       310 ~~~~~~~~~~~~~  322 (324)
                      +++|..++.|+.+
T Consensus       268 ~~lp~~p~~~~~d  280 (396)
T PRK09602        268 DYIPGDSDFEILG  280 (396)
T ss_pred             hhCCCCCccCccc
Confidence            9999888877664

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.58  E-value=1.5e-15  Score=126.43  Aligned_cols=176  Identities=18%  Similarity=0.186  Sum_probs=112.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+++|+|+.++|||+|+..+....|+..+.++++.+-...      ..++                            
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~------v~V~----------------------------   48 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN------VTVD----------------------------   48 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE------EEec----------------------------
Confidence            357899999999999999999999999999998886433221      1110                            


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYACSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~~  226 (324)
                                    .+..+.+-+|||+||+++..-+.+      .+..+..-+++|.|+...++... ..|..++.   .
T Consensus        49 --------------dg~~v~L~LwDTAGqedYDrlRpl------sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~---~  105 (198)
T KOG0393|consen   49 --------------DGKPVELGLWDTAGQEDYDRLRPL------SYPQTDVFLLCFSVVSPESFENVKSKWIPEIK---H  105 (198)
T ss_pred             --------------CCCEEEEeeeecCCCccccccccc------CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHH---h
Confidence                          022456789999999997221111      11122223455667777777654 46655442   2


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHh--cCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAIS--SDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                       ...+.|+|+|++|.||.......+.      +...-.  -....+..+++++        +...++++||++..|+.++
T Consensus       106 -~cp~vpiiLVGtk~DLr~d~~~~~~------l~~~~~~~Vt~~~g~~lA~~i--------ga~~y~EcSa~tq~~v~~v  170 (198)
T KOG0393|consen  106 -HCPNVPIILVGTKADLRDDPSTLEK------LQRQGLEPVTYEQGLELAKEI--------GAVKYLECSALTQKGVKEV  170 (198)
T ss_pred             -hCCCCCEEEEeehHHhhhCHHHHHH------HHhccCCcccHHHHHHHHHHh--------CcceeeeehhhhhCCcHHH
Confidence             2268999999999999854311111      111000  0112234444444        3478999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |+.........
T Consensus       171 F~~a~~~~l~~  181 (198)
T KOG0393|consen  171 FDEAIRAALRP  181 (198)
T ss_pred             HHHHHHHHhcc
Confidence            99998877543

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.57  E-value=5.2e-14  Score=111.66  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=99.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|.|+|..||||||++++|.+.....            +   ..+-.+.+++..                      
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~------------i---~pt~gf~Iktl~----------------------   56 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDT------------I---SPTLGFQIKTLE----------------------   56 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccc------------c---CCccceeeEEEE----------------------
Confidence            346789999999999999999998874221            0   001011111100                      


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      ...+.+.+||..||....      ..-..++.  ..|.+|||||.++...-+......-..+.-
T Consensus        57 ----------------~~~~~L~iwDvGGq~~lr------~~W~nYfe--stdglIwvvDssD~~r~~e~~~~L~~lL~e  112 (185)
T KOG0073|consen   57 ----------------YKGYTLNIWDVGGQKTLR------SYWKNYFE--STDGLIWVVDSSDRMRMQECKQELTELLVE  112 (185)
T ss_pred             ----------------ecceEEEEEEcCCcchhH------HHHHHhhh--ccCeEEEEEECchHHHHHHHHHHHHHHHhh
Confidence                            347789999999986541      11112222  248999999996644332222211111222


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHH--HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWM--QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      -.-.+.|++++.||.|+...=....+.  -.+.++.+                       ....+++-|||.+|+++.+-
T Consensus       113 erlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k-----------------------s~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen  113 ERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK-----------------------SHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             hhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc-----------------------ccCceEEEEeccccccHHHH
Confidence            223678999999999998432111111  12221111                       12478999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      +++|...+.+
T Consensus       170 idWL~~~l~~  179 (185)
T KOG0073|consen  170 IDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999887765

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.57  E-value=1.7e-14  Score=137.05  Aligned_cols=113  Identities=10%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-hhHH-HhHHHHHHHHhhcCCC-eEEEeec
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFM-SNMLYACSILYKTRLP-LVLAFNK  240 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-~~~~-~~~~~~~~~~~~~~~p-~ilv~NK  240 (324)
                      .+..+.|+||||+.+|..      .+...+  ..+|.+++|||+..+... .-.| .....++..+...++| +|+|+||
T Consensus        83 ~~~~i~liDtPGh~df~~------~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK  154 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIK------NMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK  154 (447)
T ss_pred             CCEEEEEEECCCHHHHHH------HHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence            356889999999888622      122111  357999999999886321 0000 0112233445567886 5779999


Q ss_pred             cccCCh----HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549          241 TDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       241 ~Dl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~  303 (324)
                      +|+...    .+..+..+++..+.+.+                   .+. ...+++|+||++|+|+.+
T Consensus       155 mD~~~~~~~~~~~~~i~~ei~~~l~~~-------------------g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        155 MDATTPKYSKARYDEIVKEVSSYLKKV-------------------GYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ccCCchhhhHHHHHHHHHHHHHHHHHc-------------------CCCcccceEEEEeccccccccc
Confidence            998732    22222333333222211                   111 236899999999999853

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=1.1e-13  Score=112.37  Aligned_cols=165  Identities=20%  Similarity=0.232  Sum_probs=99.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc---ccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL---PFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (324)
                      -...+|+|+|+.|+||||++++++......-     ...-+..+..   +.+...|+                   |.+.
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t-----~~~~~~~s~k~kr~tTva~D~-------------------g~~~   63 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVIT-----EADASSVSGKGKRPTTVAMDF-------------------GSIE   63 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhcccccee-----eccccccccccccceeEeecc-------------------cceE
Confidence            4567899999999999999999988753210     0000000000   01111111                   0000


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                        ...+..+.|+|||||.+|.+       +...+. ..++.+|++||++.......     ...
T Consensus        64 ------------------~~~~~~v~LfgtPGq~RF~f-------m~~~l~-~ga~gaivlVDss~~~~~~a-----~~i  112 (187)
T COG2229          64 ------------------LDEDTGVHLFGTPGQERFKF-------MWEILS-RGAVGAIVLVDSSRPITFHA-----EEI  112 (187)
T ss_pred             ------------------EcCcceEEEecCCCcHHHHH-------HHHHHh-CCcceEEEEEecCCCcchHH-----HHH
Confidence                              02246889999999999833       111111 22578899999987665411     222


Q ss_pred             HHHHhhcC-CCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          224 CSILYKTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       224 ~~~~~~~~-~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      +..+.... +|+++++||.|+.+..-...+.+.+.    .                    + ....++|+++|..+++..
T Consensus       113 i~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~----~--------------------~-~~~~~vi~~~a~e~~~~~  167 (187)
T COG2229         113 IDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK----L--------------------E-LLSVPVIEIDATEGEGAR  167 (187)
T ss_pred             HHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH----h--------------------c-cCCCceeeeecccchhHH
Confidence            23444444 99999999999987532222222111    0                    0 125899999999999999


Q ss_pred             HHHHHHHHH
Q 020549          303 AYFKAVEES  311 (324)
Q Consensus       303 ~l~~~i~~~  311 (324)
                      +.++.+...
T Consensus       168 ~~L~~ll~~  176 (187)
T COG2229         168 DQLDVLLLK  176 (187)
T ss_pred             HHHHHHHhh
Confidence            988887765

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=7e-14  Score=120.67  Aligned_cols=185  Identities=16%  Similarity=0.223  Sum_probs=106.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...+..|.|+|..|+|||||+|+|.......            ++..+.++.+..+.+..                    
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~------------v~~vg~~t~~~~~~~~~--------------------   83 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKE------------VSKVGVGTDITTRLRLS--------------------   83 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCce------------eeecccCCCchhhHHhh--------------------
Confidence            3467778899999999999999999654332            22112121111111110                    


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~  222 (324)
                                       .....+.||||||.++...+.. +...+.+.+  ...|++++++++.+...  +.++|...+ 
T Consensus        84 -----------------~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL~~d~~f~~dVi-  143 (296)
T COG3596          84 -----------------YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRALGTDEDFLRDVI-  143 (296)
T ss_pred             -----------------ccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccccCCHHHHHHHH-
Confidence                             2246789999999988522111 222233333  23589999998876553  344665433 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                          ....+.++++|+|.+|...+..-  |...-.      ...+..-..+.++.+.+..-+.+..|++.+|+..+.|++
T Consensus       144 ----~~~~~~~~i~~VtQ~D~a~p~~~--W~~~~~------~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~  211 (296)
T COG3596         144 ----ILGLDKRVLFVVTQADRAEPGRE--WDSAGH------QPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLK  211 (296)
T ss_pred             ----HhccCceeEEEEehhhhhccccc--cccccC------CCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHH
Confidence                23345899999999998765210  100000      000000011111112222123345789999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQE  314 (324)
Q Consensus       303 ~l~~~i~~~~~~  314 (324)
                      .|..++++.+|.
T Consensus       212 ~l~~ali~~lp~  223 (296)
T COG3596         212 ELVRALITALPV  223 (296)
T ss_pred             HHHHHHHHhCcc
Confidence            999999998874

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.56  E-value=8.7e-14  Score=118.49  Aligned_cols=140  Identities=13%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             CCCEEEEeCCCCcchhh-hhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh--hcCCCeEEEee
Q 020549          165 HLDYVLVDTPGQIEIFT-WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFN  239 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~N  239 (324)
                      +.++.++||||..+... .......+.+.+..  ...++++||+++.. +...+.  ..+..+..+.  ..-.++|+|+|
T Consensus        48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T  124 (196)
T cd01852          48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFT  124 (196)
T ss_pred             CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEE
Confidence            56899999999877532 11223334443332  34689999999877 443331  1122222211  12257899999


Q ss_pred             ccccCChHhHHHHHHhH-HHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH-HHH
Q 020549          240 KTDVAQHEFALEWMQDF-EVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE-FME  317 (324)
Q Consensus       240 K~Dl~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~-~~~  317 (324)
                      ++|........+++... ..|...+           ++.+.   .+..+....+ |+..+.++++|++.|.+.+++ .++
T Consensus       125 ~~d~l~~~~~~~~~~~~~~~l~~l~-----------~~c~~---r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~  189 (196)
T cd01852         125 RGDDLEGGTLEDYLENSCEALKRLL-----------EKCGG---RYVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGK  189 (196)
T ss_pred             CccccCCCcHHHHHHhccHHHHHHH-----------HHhCC---eEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCC
Confidence            99988765444333322 1111111           11000   0111112223 567789999999999999998 666


Q ss_pred             hhhcc
Q 020549          318 TYKYC  322 (324)
Q Consensus       318 ~~~~~  322 (324)
                      .|..+
T Consensus       190 ~~~~~  194 (196)
T cd01852         190 PYTND  194 (196)
T ss_pred             CCCCC
Confidence            66554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.56  E-value=8.9e-15  Score=129.62  Aligned_cols=183  Identities=19%  Similarity=0.284  Sum_probs=106.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE-EEeccCCccccccccc---ccchhcHHHHHHHHHHcCCCCCCccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAA---NIDIRDTIRYKEVMKQFNLGPNGGIL  142 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~-~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~  142 (324)
                      +...+++.+|...-|||||+.+|+......-... .-+    ...+..+++   .+|..-.+..-+.-++-|+    .|-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l----~~dS~~~~t~g~~~D~ALLvDGL~AEREQGI----TID   75 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASL----ERDSKRKGTQGEKIDLALLVDGLEAEREQGI----TID   75 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHH----hcccccccCCCCccchhhhhhhhHHHHhcCc----eEE
Confidence            4567899999999999999999998754421000 000    001111111   2222111111111111111    122


Q ss_pred             ccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                      ....+|+..             ..++++.||||+++| .+...-.       .+-||++|++||++.++..++.-...+.
T Consensus        76 VAYRyFsT~-------------KRkFIiADTPGHeQY-TRNMaTG-------ASTadlAIlLVDAR~Gvl~QTrRHs~I~  134 (431)
T COG2895          76 VAYRYFSTE-------------KRKFIIADTPGHEQY-TRNMATG-------ASTADLAILLVDARKGVLEQTRRHSFIA  134 (431)
T ss_pred             EEeeecccc-------------cceEEEecCCcHHHH-hhhhhcc-------cccccEEEEEEecchhhHHHhHHHHHHH
Confidence            344455543             679999999998775 2221111       1447999999999999988875544332


Q ss_pred             HHHHHhhcCCC-eEEEeeccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          223 ACSILYKTRLP-LVLAFNKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       223 ~~~~~~~~~~p-~ilv~NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                      .     -.++. +|+++|||||++-  +...++..++..+++.+              +     . ....+||+||+.|+
T Consensus       135 s-----LLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L--------------~-----~-~~~~~IPiSAl~GD  189 (431)
T COG2895         135 S-----LLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQL--------------G-----L-KDVRFIPISALLGD  189 (431)
T ss_pred             H-----HhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHc--------------C-----C-CcceEEechhccCC
Confidence            2     23443 5779999999974  33455555555554433              1     1 23589999999999


Q ss_pred             ChHH
Q 020549          300 GIEA  303 (324)
Q Consensus       300 gv~~  303 (324)
                      ||-.
T Consensus       190 NV~~  193 (431)
T COG2895         190 NVVS  193 (431)
T ss_pred             cccc
Confidence            9863

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=1.2e-14  Score=133.10  Aligned_cols=173  Identities=21%  Similarity=0.276  Sum_probs=107.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc-----
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS-----  144 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----  144 (324)
                      ..++|+-+-..|||||..+|+......             +           .+.--..+++...+....||...     
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~-------------~-----------~Rem~~Q~LDsMdiERERGITIKaq~v~   65 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGL-------------S-----------EREMRAQVLDSMDIERERGITIKAQAVR   65 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCc-------------C-----------hHHHHHHhhhhhhhHhhcCceEEeeEEE
Confidence            447899999999999999999864321             1           11111122333333333343321     


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      +.+-...           +..+.+.|+||||+.+|.+      .+.+.++  .|-.+++||||+.|.+.++.     ...
T Consensus        66 l~Yk~~~-----------g~~Y~lnlIDTPGHVDFsY------EVSRSLA--ACEGalLvVDAsQGveAQTl-----AN~  121 (603)
T COG0481          66 LNYKAKD-----------GETYVLNLIDTPGHVDFSY------EVSRSLA--ACEGALLVVDASQGVEAQTL-----ANV  121 (603)
T ss_pred             EEEEeCC-----------CCEEEEEEcCCCCccceEE------EehhhHh--hCCCcEEEEECccchHHHHH-----HHH
Confidence            1111100           2356788999999999844      2222222  24678999999999987762     222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......+.-+|-|+||+||...+- ....++++.                 -++      ......+.+|||+|.||+++
T Consensus       122 YlAle~~LeIiPViNKIDLP~Adp-ervk~eIe~-----------------~iG------id~~dav~~SAKtG~gI~~i  177 (603)
T COG0481         122 YLALENNLEIIPVLNKIDLPAADP-ERVKQEIED-----------------IIG------IDASDAVLVSAKTGIGIEDV  177 (603)
T ss_pred             HHHHHcCcEEEEeeecccCCCCCH-HHHHHHHHH-----------------HhC------CCcchheeEecccCCCHHHH
Confidence            234456788899999999986531 112222221                 011      13357899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      ++.|++.+|.
T Consensus       178 Le~Iv~~iP~  187 (603)
T COG0481         178 LEAIVEKIPP  187 (603)
T ss_pred             HHHHHhhCCC
Confidence            9999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.55  E-value=1.2e-14  Score=112.98  Aligned_cols=115  Identities=23%  Similarity=0.390  Sum_probs=66.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+|+|.+|||||||+|+|++.....            +...++++.....                  +...       
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------~~~~~~~T~~~~~------------------~~~~-------   43 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAK------------VSNIPGTTRDPVY------------------GQFE-------   43 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSE------------ESSSTTSSSSEEE------------------EEEE-------
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccc------------ccccccceeeeee------------------eeee-------
Confidence            58999999999999999999854221            2222322210000                  0000       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                  ..+..+.|+||||+.+..........+.+.++. ..+|+++||+|+.....  .....++   +.+. 
T Consensus        44 ------------~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~--~~~~~~~---~~l~-  105 (116)
T PF01926_consen   44 ------------YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT--EDDKNIL---RELK-  105 (116)
T ss_dssp             ------------ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH--HHHHHHH---HHHH-
T ss_pred             ------------eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC--HHHHHHH---HHHh-
Confidence                        124567899999987642222211122223322 45699999999766211  1122222   3344 


Q ss_pred             cCCCeEEEeec
Q 020549          230 TRLPLVLAFNK  240 (324)
Q Consensus       230 ~~~p~ilv~NK  240 (324)
                      .+.|+++|+||
T Consensus       106 ~~~~~i~v~NK  116 (116)
T PF01926_consen  106 NKKPIILVLNK  116 (116)
T ss_dssp             TTSEEEEEEES
T ss_pred             cCCCEEEEEcC
Confidence            78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.55  E-value=2e-14  Score=122.58  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=72.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+++|++..+...+.+++. .+..+....+..                       +. .      
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig-~~~~~k~~~~~~-----------------------~~-~------   49 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVG-CSVDVKHHTYKE-----------------------GT-P------   49 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCccee-eeEEEEEEEEcC-----------------------CC-C------
Confidence            3799999999999999999999877654333220 000000000000                       00 0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcC--CCCCCchhHHHhHHHHHH--
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT--PRSANPMTFMSNMLYACS--  225 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~--~~~~~~~~~~~~~~~~~~--  225 (324)
                                  ....+.+.||||+|++++..      .....++  .++++|+|.|.  ..++.....|...+....  
T Consensus        50 ------------~~~~~~l~IwDtaG~e~~~~------l~~~~yr--~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~  109 (202)
T cd04102          50 ------------EEKTFFVELWDVGGSESVKS------TRAVFYN--QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTF  109 (202)
T ss_pred             ------------CCcEEEEEEEecCCchhHHH------HHHHHhC--cCCEEEEEEECcChHHHHHHHHHHHHHHHhhcc
Confidence                        01245788999999987621      1111222  34666666664  445555556654442110  


Q ss_pred             --------------HHhhcCCCeEEEeeccccCCh
Q 020549          226 --------------ILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       226 --------------~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                                    .....++|+|||+||+|+.+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102         110 PTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             ccccccccccccccccCCCCceEEEEEECccchhh
Confidence                          011246899999999999764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.53  E-value=5.1e-14  Score=115.89  Aligned_cols=177  Identities=19%  Similarity=0.209  Sum_probs=108.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHH-cC---CCCCCcccccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ-FN---LGPNGGILTSL  145 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---l~~~~~~~~~~  145 (324)
                      ..|.+.|+||||||+|+.+++...... +...++..|....          .+.    +.+.. .+   .+.+.|-.|. 
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~----------~Da----~~l~~~~g~~i~~v~TG~~CH-   77 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTK----------EDA----DRLRKLPGEPIIGVETGKGCH-   77 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeech----------hhH----HHHHhCCCCeeEEeccCCccC-
Confidence            789999999999999999999887665 6777766664331          000    01111 11   1223342331 


Q ss_pred             cccChHH-HHHHHHHHHHhCCCCEEEEeCCC-CcchhhhhhhHHHHHHHHhccCCc-EEEEEEcCCCCCCchhHHHhHHH
Q 020549          146 NLFTTKF-DEVISLIERRADHLDYVLVDTPG-QIEIFTWSASGAIITEAFASTFPT-VVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG-~~~~~~~~~~~~~~~~~~~~~~~d-~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                        +..+| .+.++.+.......+++|+++.| ..-++. -            ...| +-|||+|..+|..-....-..+ 
T Consensus        78 --~da~m~~~ai~~l~~~~~~~Dll~iEs~GNL~~~~s-p------------~L~d~~~v~VidvteGe~~P~K~gP~i-  141 (202)
T COG0378          78 --LDASMNLEAIEELVLDFPDLDLLFIESVGNLVCPFS-P------------DLGDHLRVVVIDVTEGEDIPRKGGPGI-  141 (202)
T ss_pred             --CcHHHHHHHHHHHhhcCCcCCEEEEecCcceecccC-c------------chhhceEEEEEECCCCCCCcccCCCce-
Confidence              22233 23344444444457999999999 322211 0            1123 7899999998876554311111 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                              -..-++|+||.|+.+.-..  ....+..+                         +..+..+++++|+++|+|
T Consensus       142 --------~~aDllVInK~DLa~~v~~dlevm~~da~-------------------------~~np~~~ii~~n~ktg~G  188 (202)
T COG0378         142 --------FKADLLVINKTDLAPYVGADLEVMARDAK-------------------------EVNPEAPIIFTNLKTGEG  188 (202)
T ss_pred             --------eEeeEEEEehHHhHHHhCccHHHHHHHHH-------------------------HhCCCCCEEEEeCCCCcC
Confidence                    1234899999999865221  11111111                         345789999999999999


Q ss_pred             hHHHHHHHHHH
Q 020549          301 IEAYFKAVEES  311 (324)
Q Consensus       301 v~~l~~~i~~~  311 (324)
                      ++++++++...
T Consensus       189 ~~~~~~~i~~~  199 (202)
T COG0378         189 LDEWLRFIEPQ  199 (202)
T ss_pred             HHHHHHHHHhh
Confidence            99999888754

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.53  E-value=1.9e-14  Score=128.64  Aligned_cols=225  Identities=14%  Similarity=0.112  Sum_probs=134.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+....|+..|+.++|||||+..|.......+.-.+-...|..-++..-+-+.++.        +.-+|+.. ++++.-.
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS--------~~v~Gf~d-gk~~rlk  184 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADIS--------LRVYGFDD-GKVVRLK  184 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhcccccee--------EEEEEecC-CceEeec
Confidence            34457899999999999999999987766544322211111111111111111111        11233333 3333222


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                      +.+....+..    .....+.-+.|+||.|++. |.+.....     +.....|+.+++|.|.++....+     .+++.
T Consensus       185 nPld~aE~~~----vv~~aDklVsfVDtvGHEp-wLrTtirG-----L~gqk~dYglLvVaAddG~~~~t-----kEHLg  249 (527)
T COG5258         185 NPLDEAEKAA----VVKRADKLVSFVDTVGHEP-WLRTTIRG-----LLGQKVDYGLLVVAADDGVTKMT-----KEHLG  249 (527)
T ss_pred             CcccHHHHhH----hhhhcccEEEEEecCCccH-HHHHHHHH-----HhccccceEEEEEEccCCcchhh-----hHhhh
Confidence            2232222221    1112245567999999544 33333332     23344699999999999987665     33446


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHH-hHHHHhc-cCceeeeccccCCChHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSL-ALDEFYK-NLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~iv~vSA~~g~gv~~  303 (324)
                      .+...++|+|+|++|||+...++.+...+++..+++...+.|-...+....... ...+... .+|||.+||.+|+|++-
T Consensus       250 i~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl  329 (527)
T COG5258         250 IALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL  329 (527)
T ss_pred             hhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH
Confidence            667789999999999999999999999999998888876654332222222111 1112222 57999999999999998


Q ss_pred             HHHHHHHHHHH
Q 020549          304 YFKAVEESAQE  314 (324)
Q Consensus       304 l~~~i~~~~~~  314 (324)
                      |.+.+....+.
T Consensus       330 L~e~f~~Lp~r  340 (527)
T COG5258         330 LDEFFLLLPKR  340 (527)
T ss_pred             HHHHHHhCCcc
Confidence            87777655443

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.52  E-value=8.1e-14  Score=127.46  Aligned_cols=181  Identities=17%  Similarity=0.217  Sum_probs=113.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..|+||-+...|||||+..|+.+...-...                      .. ..+.+|+.-.+....||..    ++
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~----------------------e~-v~ERvMDSnDlEkERGITI----La   58 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFRER----------------------EE-VAERVMDSNDLEKERGITI----LA   58 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccc----------------------cc-hhhhhcCccchhhhcCcEE----Ee
Confidence            459999999999999999999874321100                      00 0122333333333344432    22


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                      ++.       ...+.+..+.|+||||+.+|  .+.....+      ...|.++++|||.++..+++..     .+.+...
T Consensus        59 KnT-------av~~~~~~INIvDTPGHADF--GGEVERvl------~MVDgvlLlVDA~EGpMPQTrF-----VlkKAl~  118 (603)
T COG1217          59 KNT-------AVNYNGTRINIVDTPGHADF--GGEVERVL------SMVDGVLLLVDASEGPMPQTRF-----VLKKALA  118 (603)
T ss_pred             ccc-------eeecCCeEEEEecCCCcCCc--cchhhhhh------hhcceEEEEEEcccCCCCchhh-----hHHHHHH
Confidence            221       11255789999999999998  33333222      2348999999999999999733     2245556


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC----------C
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG----------A  299 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g----------~  299 (324)
                      .+++-|+|+||+|.....-- +...+.-.|.-.+...                .-.-..|++..||+.|          .
T Consensus       119 ~gL~PIVVvNKiDrp~Arp~-~Vvd~vfDLf~~L~A~----------------deQLdFPivYAS~~~G~a~~~~~~~~~  181 (603)
T COG1217         119 LGLKPIVVINKIDRPDARPD-EVVDEVFDLFVELGAT----------------DEQLDFPIVYASARNGTASLDPEDEAD  181 (603)
T ss_pred             cCCCcEEEEeCCCCCCCCHH-HHHHHHHHHHHHhCCC----------------hhhCCCcEEEeeccCceeccCcccccc
Confidence            78888999999999874311 1222222222222111                0012468999999988          4


Q ss_pred             ChHHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQE  314 (324)
Q Consensus       300 gv~~l~~~i~~~~~~  314 (324)
                      ++..||+.|.+++|.
T Consensus       182 ~m~pLfe~I~~hvp~  196 (603)
T COG1217         182 DMAPLFETILDHVPA  196 (603)
T ss_pred             chhHHHHHHHHhCCC
Confidence            789999999999875

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=2e-13  Score=123.93  Aligned_cols=107  Identities=18%  Similarity=0.307  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-------CCchhHHHhHHHHHHHHhhcCC-CeEE
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRL-PLVL  236 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~~~~~-p~il  236 (324)
                      .+.+.|+|+||+.+|......+        .+.+|++|+|||++.+       ...++....++     ..-.++ -+|+
T Consensus        84 k~~~tIiDaPGHrdFvknmItG--------asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L-----a~tlGi~~lIV  150 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITG--------ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL-----ARTLGIKQLIV  150 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcc--------hhhccEEEEEEECCCCccccccccCCchhHHHHH-----HHhcCCceEEE
Confidence            4568899999965652211111        1346999999999987       45555333222     222343 4588


Q ss_pred             EeeccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCChHH
Q 020549          237 AFNKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       237 v~NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~gv~~  303 (324)
                      ++||+|+++  .++..+....+..|.+.+                   .|.+ ..+++|+||..|+|+.+
T Consensus       151 avNKMD~v~wde~rf~ei~~~v~~l~k~~-------------------G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         151 AVNKMDLVSWDEERFEEIVSEVSKLLKMV-------------------GYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             EEEcccccccCHHHHHHHHHHHHHHHHHc-------------------CCCccCCeEEecccccCCcccc
Confidence            999999986  333344444444333322                   3333 37899999999999875

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.51  E-value=4.2e-14  Score=110.03  Aligned_cols=161  Identities=19%  Similarity=0.193  Sum_probs=99.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..+.++|-.++|||||+|.+....+.....+++              .+..+..                   +      
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptv--------------Gfnmrk~-------------------t------   61 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTV--------------GFNMRKV-------------------T------   61 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccchhhhcccc--------------cceeEEe-------------------c------
Confidence            458999999999999999987765543221111              1111111                   0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHHHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILY  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~~~~  228 (324)
                                   .+...+.+||.|||.+|.  ...    .++.+  ..++++|+||+.+.-. ..--.+++. .+....
T Consensus        62 -------------kgnvtiklwD~gGq~rfr--smW----erycR--~v~aivY~VDaad~~k-~~~sr~EL~~LL~k~~  119 (186)
T KOG0075|consen   62 -------------KGNVTIKLWDLGGQPRFR--SMW----ERYCR--GVSAIVYVVDAADPDK-LEASRSELHDLLDKPS  119 (186)
T ss_pred             -------------cCceEEEEEecCCCccHH--HHH----HHHhh--cCcEEEEEeecCCccc-chhhHHHHHHHhcchh
Confidence                         236678899999998872  211    11222  2489999999987322 222222222 222233


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      -.++|+++.+||.|+...-...++.+++.                     ..- ---..+-++.+||+...||+.+.+.|
T Consensus       120 l~gip~LVLGnK~d~~~AL~~~~li~rmg---------------------L~s-itdREvcC~siScke~~Nid~~~~Wl  177 (186)
T KOG0075|consen  120 LTGIPLLVLGNKIDLPGALSKIALIERMG---------------------LSS-ITDREVCCFSISCKEKVNIDITLDWL  177 (186)
T ss_pred             hcCCcEEEecccccCcccccHHHHHHHhC---------------------ccc-cccceEEEEEEEEcCCccHHHHHHHH
Confidence            36899999999999987543333333221                     100 00123678999999999999999999


Q ss_pred             HHHHH
Q 020549          309 EESAQ  313 (324)
Q Consensus       309 ~~~~~  313 (324)
                      .++-.
T Consensus       178 i~hsk  182 (186)
T KOG0075|consen  178 IEHSK  182 (186)
T ss_pred             HHHhh
Confidence            88753

>cd01882 BMS1 Bms1

Probab=99.50  E-value=5.8e-13  Score=115.80  Aligned_cols=145  Identities=19%  Similarity=0.291  Sum_probs=87.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...+..|+++|++|+|||||++.|.+.....           .+....++.                       .+..  
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------~~~~~~g~i-----------------------~i~~--   79 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------NISDIKGPI-----------------------TVVT--   79 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------ccccccccE-----------------------EEEe--
Confidence            4567889999999999999999998752211           000000000                       0000  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       ..+.++.|+||||...         .+....  ..+|++++++|+..++...+.     ..+.
T Consensus        80 -----------------~~~~~i~~vDtPg~~~---------~~l~~a--k~aDvVllviDa~~~~~~~~~-----~i~~  126 (225)
T cd01882          80 -----------------GKKRRLTFIECPNDIN---------AMIDIA--KVADLVLLLIDASFGFEMETF-----EFLN  126 (225)
T ss_pred             -----------------cCCceEEEEeCCchHH---------HHHHHH--HhcCEEEEEEecCcCCCHHHH-----HHHH
Confidence                             1256889999998421         122222  336999999999887765542     1224


Q ss_pred             HHhhcCCCeEE-EeeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          226 ILYKTRLPLVL-AFNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       226 ~~~~~~~p~il-v~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                      .+...++|.++ |+||+|+..... .....+.++.                 .+   ..++.++.+++++||++.-
T Consensus       127 ~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~-----------------~~---~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         127 ILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH-----------------RF---WTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH-----------------HH---HHhhCCCCcEEEEeeccCC
Confidence            44556788655 999999985432 2222222221                 11   1134567899999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=4.1e-13  Score=134.60  Aligned_cols=70  Identities=23%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+..+.||||||+.++..      .....+  ..+|++++++|+..+......     ..+..+...++|+++|+||+|+
T Consensus        58 ~~~~i~liDtPG~~~~~~------~~~~~l--~~aD~vllvvd~~~~~~~~~~-----~~~~~~~~~~~p~iiv~NK~D~  124 (668)
T PRK12740         58 KGHKINLIDTPGHVDFTG------EVERAL--RVLDGAVVVVCAVGGVEPQTE-----TVWRQAEKYGVPRIIFVNKMDR  124 (668)
T ss_pred             CCEEEEEEECCCcHHHHH------HHHHHH--HHhCeEEEEEeCCCCcCHHHH-----HHHHHHHHcCCCEEEEEECCCC
Confidence            467899999999876421      112222  236999999999887654431     1223445568999999999998


Q ss_pred             CCh
Q 020549          244 AQH  246 (324)
Q Consensus       244 ~~~  246 (324)
                      ...
T Consensus       125 ~~~  127 (668)
T PRK12740        125 AGA  127 (668)
T ss_pred             CCC
Confidence            754

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.46  E-value=6.4e-13  Score=135.77  Aligned_cols=136  Identities=23%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      .+.+.||||||++.|...      .  ......+|++++|+|+.+++.+++..     .+..+...++|+|+|+||+|+.
T Consensus       525 ~p~i~fiDTPGhe~F~~l------r--~~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~  591 (1049)
T PRK14845        525 IPGLLFIDTPGHEAFTSL------R--KRGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLI  591 (1049)
T ss_pred             cCcEEEEECCCcHHHHHH------H--HhhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCc
Confidence            356899999997665210      1  11124479999999999887776532     2234555689999999999997


Q ss_pred             ChHh-------HHHHHHhHHHHHHHHhcC-ccchhhHHHHHHH------hHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          245 QHEF-------ALEWMQDFEVFQAAISSD-HSYTSTLTNSLSL------ALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       245 ~~~~-------~~~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~------~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      ....       ...+..+.+....++... ......| .+++.      .++++....++|||||++|+|+++|+..|..
T Consensus       592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L-~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKL-YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH-HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4321       011111111100100000 0000001 01110      1234556789999999999999999998876


Q ss_pred             HHHH
Q 020549          311 SAQE  314 (324)
Q Consensus       311 ~~~~  314 (324)
                      ....
T Consensus       671 l~~~  674 (1049)
T PRK14845        671 LAQK  674 (1049)
T ss_pred             hhHH
Confidence            5543

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.45  E-value=9e-13  Score=121.68  Aligned_cols=175  Identities=17%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .....+.|+|.||+|||||+|.++.....             +-.+++||.    ..                       
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradve-------------vqpYaFTTk----sL-----------------------  205 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDE-------------VQPYAFTTK----LL-----------------------  205 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccc-------------cCCcccccc----hh-----------------------
Confidence            34567899999999999999998876443             566677761    11                       


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchh-HHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMT-FMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~-~~~~~~~~~  224 (324)
                       |..++.         ..-..|+++||||+.+.-........+.... ......+|+|++|.++.+...- ....++..+
T Consensus       206 -~vGH~d---------ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI  275 (620)
T KOG1490|consen  206 -LVGHLD---------YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI  275 (620)
T ss_pred             -hhhhhh---------hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh
Confidence             111221         1245788999999876421111111111111 1233468899999887664321 111112111


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      . -.-.++|+|+|+||||+..++.+.+..+++   ...+                   .--.+++++.+|+.+.+||.++
T Consensus       276 K-pLFaNK~~IlvlNK~D~m~~edL~~~~~~l---l~~~-------------------~~~~~v~v~~tS~~~eegVm~V  332 (620)
T KOG1490|consen  276 K-PLFANKVTILVLNKIDAMRPEDLDQKNQEL---LQTI-------------------IDDGNVKVVQTSCVQEEGVMDV  332 (620)
T ss_pred             H-HHhcCCceEEEeecccccCccccCHHHHHH---HHHH-------------------HhccCceEEEecccchhceeeH
Confidence            1 223689999999999998876432222111   1111                   0113478999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      ....++.+..
T Consensus       333 rt~ACe~LLa  342 (620)
T KOG1490|consen  333 RTTACEALLA  342 (620)
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>cd01850 CDC_Septin CDC/Septin

Probab=99.44  E-value=1.1e-12  Score=117.41  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CCcEEEEEEcCCC-CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHH
Q 020549          197 FPTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVF  259 (324)
Q Consensus       197 ~~d~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l  259 (324)
                      ..++++|++++.. +..+.+     +..++.+.. .+|+|+|+||+|+...++.....+.+...
T Consensus       114 rvh~~ly~i~~~~~~l~~~D-----~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~  171 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLD-----IEFMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMED  171 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHH-----HHHHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHH
Confidence            3589999998764 443333     222234443 79999999999998876554444444433

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.43  E-value=2.2e-12  Score=98.02  Aligned_cols=143  Identities=20%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+++++|..|+|||||.+.|.|.....+...++       +                                       
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAv-------e---------------------------------------   35 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAV-------E---------------------------------------   35 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhccccee-------e---------------------------------------
Confidence            468999999999999999998874332221111       0                                       


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                     -.+=-.+||||-  ++.+......+.-.  ...+|++++|-.+.+......   .     ....-
T Consensus        36 ---------------~~d~~~IDTPGE--y~~~~~~Y~aL~tt--~~dadvi~~v~~and~~s~f~---p-----~f~~~   88 (148)
T COG4917          36 ---------------FNDKGDIDTPGE--YFEHPRWYHALITT--LQDADVIIYVHAANDPESRFP---P-----GFLDI   88 (148)
T ss_pred             ---------------ccCccccCCchh--hhhhhHHHHHHHHH--hhccceeeeeecccCccccCC---c-----ccccc
Confidence                           001125899993  22222222222221  134689999888776543321   0     11222


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...|+|-|++|+|+.++..+....+.+.                         + .+..+||.+||.+..|+++|++.|.
T Consensus        89 ~~k~vIgvVTK~DLaed~dI~~~~~~L~-------------------------e-aGa~~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917          89 GVKKVIGVVTKADLAEDADISLVKRWLR-------------------------E-AGAEPIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             cccceEEEEecccccchHhHHHHHHHHH-------------------------H-cCCcceEEEeccCcccHHHHHHHHH
Confidence            4567899999999997654322221111                         1 1346899999999999999999987


Q ss_pred             HH
Q 020549          310 ES  311 (324)
Q Consensus       310 ~~  311 (324)
                      ..
T Consensus       143 ~~  144 (148)
T COG4917         143 SL  144 (148)
T ss_pred             hh
Confidence            54

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=99.43  E-value=3e-12  Score=115.99  Aligned_cols=160  Identities=19%  Similarity=0.196  Sum_probs=93.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +..+|.|+-|||||||+|.|+....  +.+++++-++.+...+.....+.        +.-+++..-.|||+||+++..-
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~--------~~~e~~~El~nGCICCT~r~dl   71 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLS--------DTGEEVVELTNGCICCTVRDDL   71 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccc--------cCCccEEEeCCceEEEeccchh
Confidence            3578999999999999999998866  44555544433332222100000        0001233456899999855433


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHH-HHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT-EAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      ..+.+.+.  . ....++.++|.|.|+.++..  -....+. ..+.. ..-|.+|-|||+.+...........     ..
T Consensus        72 ~~~~~~L~--~-~~~~~D~ivIEtTGlA~P~p--v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~-----~~  141 (323)
T COG0523          72 LPALERLL--R-RRDRPDRLVIETTGLADPAP--VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAEL-----AE  141 (323)
T ss_pred             HHHHHHHH--h-ccCCCCEEEEeCCCCCCCHH--HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHH-----HH
Confidence            33333322  2 34569999999999988721  0111111 11211 2247899999998766544322221     12


Q ss_pred             hhcCCCeEEEeeccccCChHhH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFA  249 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~  249 (324)
                      .+....-+||+||+|+++++..
T Consensus       142 ~Qia~AD~ivlNK~Dlv~~~~l  163 (323)
T COG0523         142 DQLAFADVIVLNKTDLVDAEEL  163 (323)
T ss_pred             HHHHhCcEEEEecccCCCHHHH
Confidence            2334455999999999998753

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.41  E-value=1.8e-12  Score=113.95  Aligned_cols=154  Identities=24%  Similarity=0.320  Sum_probs=95.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...+.|+++|+.|+|||||+++|++...-. ....+.+.||+...                            +..    
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~----------------------------a~L----  222 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHS----------------------------AHL----  222 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhh----------------------------ccC----
Confidence            445779999999999999999999543221 12222223332211                            111    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-----cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-----TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                      ..+..++|.||-|+..     .+...+...|++     ..+|+++.|+|.++..-... .   .
T Consensus       223 ----------------psg~~vlltDTvGFis-----dLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q-~---e  277 (410)
T KOG0410|consen  223 ----------------PSGNFVLLTDTVGFIS-----DLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQ-R---E  277 (410)
T ss_pred             ----------------CCCcEEEEeechhhhh-----hCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHH-H---H
Confidence                            2256788999999654     233344444433     34799999999987543322 1   2


Q ss_pred             HHHHHHhhcCCC-------eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeec
Q 020549          222 YACSILYKTRLP-------LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS  294 (324)
Q Consensus       222 ~~~~~~~~~~~p-------~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vS  294 (324)
                      ..+..++..+.|       +|=|=||+|..+..-     +.                              +..-.+++|
T Consensus       278 ~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----e~------------------------------E~n~~v~is  322 (410)
T KOG0410|consen  278 TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----EE------------------------------EKNLDVGIS  322 (410)
T ss_pred             HHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----cc------------------------------ccCCccccc
Confidence            223455666654       345778888765420     00                              112268899


Q ss_pred             cccCCChHHHHHHHHHHHH
Q 020549          295 SVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       295 A~~g~gv~~l~~~i~~~~~  313 (324)
                      |++|.|++++...+.....
T Consensus       323 altgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             cccCccHHHHHHHHHHHhh
Confidence            9999999999999987654

>PLN00023 GTP-binding protein; Provisional

Probab=99.41  E-value=6.6e-13  Score=119.25  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~   97 (324)
                      ....+|+|+|..|||||||+++|++..+...
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~   49 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR   49 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccc
Confidence            3457899999999999999999998876543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.40  E-value=4e-13  Score=104.72  Aligned_cols=67  Identities=21%  Similarity=0.322  Sum_probs=38.7

Q ss_pred             CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh--hcCCCeEEEeeccc
Q 020549          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD  242 (324)
Q Consensus       167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~NK~D  242 (324)
                      .+.|||++|+.++..  .....+      ..+|++++|+|..+.. .......++..+..+.  ..++|+|+|+||.|
T Consensus        51 ~~~~~d~~g~~~~~~--~~~~~~------~~~d~~ilv~D~s~~~-s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   51 SLQFWDFGGQEEFYS--QHQFFL------KKADAVILVYDLSDPE-SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEESSSHCHHC--TSHHHH------HHSCEEEEEEECCGHH-HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEEecCccceecc--cccchh------hcCcEEEEEEcCCChH-HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            478999999877532  111111      2258999999986532 1122222222223333  24599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.40  E-value=9.3e-12  Score=115.30  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ...+.+|+|+|.||||||||+|+|++...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~   46 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV   46 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcc
Confidence            34667899999999999999999977643

>PTZ00099 rab6; Provisional

Probab=99.38  E-value=1e-12  Score=109.86  Aligned_cols=114  Identities=18%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ..++.||||||++++..      ....++  ..+|++++|+|...  ++.....|...+   ......+.|+++|+||+|
T Consensus        28 ~v~l~iwDt~G~e~~~~------~~~~~~--~~ad~~ilv~D~t~~~sf~~~~~w~~~i---~~~~~~~~piilVgNK~D   96 (176)
T PTZ00099         28 PVRLQLWDTAGQERFRS------LIPSYI--RDSAAAIVVYDITNRQSFENTTKWIQDI---LNERGKDVIIALVGNKTD   96 (176)
T ss_pred             EEEEEEEECCChHHhhh------ccHHHh--CCCcEEEEEEECCCHHHHHHHHHHHHHH---HHhcCCCCeEEEEEECcc
Confidence            56889999999987621      111122  34689999999766  344444453322   122235689999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      +.......  ..+...+.                      .. ....++++||++|.||+++|+.|.+.+++
T Consensus        97 L~~~~~v~--~~e~~~~~----------------------~~-~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         97 LGDLRKVT--YEEGMQKA----------------------QE-YNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             cccccCCC--HHHHHHHH----------------------HH-cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            96432110  00001000                      11 13568999999999999999999999876

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=8.8e-12  Score=110.33  Aligned_cols=121  Identities=23%  Similarity=0.306  Sum_probs=75.3

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      ...++.|+|+||+...         ++..+.. ...|+.++|||...+.+.++.  +.+..-..   .....|+|+||+|
T Consensus        68 e~lq~tlvDCPGHasL---------IRtiiggaqiiDlm~lviDv~kG~QtQtA--EcLiig~~---~c~klvvvinkid  133 (522)
T KOG0461|consen   68 EQLQFTLVDCPGHASL---------IRTIIGGAQIIDLMILVIDVQKGKQTQTA--ECLIIGEL---LCKKLVVVINKID  133 (522)
T ss_pred             ccceeEEEeCCCcHHH---------HHHHHhhhheeeeeeEEEehhcccccccc--hhhhhhhh---hccceEEEEeccc
Confidence            3567899999996442         2222222 335999999999999887752  12211111   3345699999999


Q ss_pred             cCChHhHHHHHHhHH-HHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC----CChHHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFE-VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG----AGIEAYFKAVEESAQE  314 (324)
Q Consensus       243 l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g----~gv~~l~~~i~~~~~~  314 (324)
                      ..........++... ++.+.++.                ..+-++.||+++||+.|    +++.+|.+.|...+-+
T Consensus       134 ~lpE~qr~ski~k~~kk~~KtLe~----------------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  134 VLPENQRASKIEKSAKKVRKTLES----------------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHh----------------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            887654332322221 11111110                03445689999999999    7888888888776643

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.38  E-value=6.4e-12  Score=126.79  Aligned_cols=68  Identities=26%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.|+||||+++|..      .+...+  ..+|++|+|||+..++..++..     .+......+.|.|+++||+|+.
T Consensus        86 ~~~i~liDtPG~~df~~------~~~~~l--~~~D~avlVvda~~g~~~~t~~-----~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         86 EYLINLIDTPGHVDFGG------DVTRAM--RAVDGAIVVVDAVEGVMPQTET-----VLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             cEEEEEEcCCCccChHH------HHHHHH--HhcCEEEEEEECCCCCCccHHH-----HHHHHHHcCCCeEEEEECchhh
Confidence            56788999999988621      222222  3359999999999988766522     1233344578899999999987


Q ss_pred             C
Q 020549          245 Q  245 (324)
Q Consensus       245 ~  245 (324)
                      .
T Consensus       153 ~  153 (731)
T PRK07560        153 I  153 (731)
T ss_pred             c
Confidence            4

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=5.3e-12  Score=115.58  Aligned_cols=159  Identities=19%  Similarity=0.163  Sum_probs=107.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+..|+...|||||+.++.+..-....           ....-+.++|+.                   +..    +  
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~-----------EekKRG~TiDlg-------------------~~y----~--   45 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLP-----------EEKKRGITIDLG-------------------FYY----R--   45 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccch-----------hhhhcCceEeee-------------------eEe----c--
Confidence            5889999999999999999886433210           001111122211                   110    0  


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                 ...+..+-|+|.||+.++         +...+.. ...|+++++||+.+++..++     .+++..+..
T Consensus        46 -----------~~~d~~~~fIDvpgh~~~---------i~~miag~~~~d~alLvV~~deGl~~qt-----gEhL~iLdl  100 (447)
T COG3276          46 -----------KLEDGVMGFIDVPGHPDF---------ISNLLAGLGGIDYALLVVAADEGLMAQT-----GEHLLILDL  100 (447)
T ss_pred             -----------cCCCCceEEeeCCCcHHH---------HHHHHhhhcCCceEEEEEeCccCcchhh-----HHHHHHHHh
Confidence                       022457789999998775         2222222 34599999999999998876     333445566


Q ss_pred             cCCCe-EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          230 TRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       230 ~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      .+++. ++|+||+|+.+..+..+..+.+..   .+                   . ++..+++++||++|+||++|.+.|
T Consensus       101 lgi~~giivltk~D~~d~~r~e~~i~~Il~---~l-------------------~-l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276         101 LGIKNGIIVLTKADRVDEARIEQKIKQILA---DL-------------------S-LANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             cCCCceEEEEeccccccHHHHHHHHHHHHh---hc-------------------c-cccccccccccccCCCHHHHHHHH
Confidence            77777 899999999998765554444331   11                   1 356889999999999999999999


Q ss_pred             HHHHH
Q 020549          309 EESAQ  313 (324)
Q Consensus       309 ~~~~~  313 (324)
                      .+...
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            99884

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.35  E-value=5.8e-12  Score=104.49  Aligned_cols=121  Identities=22%  Similarity=0.332  Sum_probs=63.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ...|.|+|++|+|||+|+.+|.......           +++++...                       .+....    
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-----------T~tS~e~n-----------------------~~~~~~----   44 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-----------TVTSMENN-----------------------IAYNVN----   44 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS--------------B---SSEE-----------------------EECCGS----
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCC-----------eeccccCC-----------------------ceEEee----
Confidence            3459999999999999999999884432           22222111                       011100    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH-
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI-  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~-  226 (324)
                                   ......+.++|+||+.+.  +.    .+.+.+ ....+..||||||+...........+.+..+-. 
T Consensus        45 -------------~~~~~~~~lvD~PGH~rl--r~----~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~  105 (181)
T PF09439_consen   45 -------------NSKGKKLRLVDIPGHPRL--RS----KLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD  105 (181)
T ss_dssp             -------------STCGTCECEEEETT-HCC--CH----HHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred             -------------cCCCCEEEEEECCCcHHH--HH----HHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence                         023567899999998765  22    222221 113357999999986422222222222221111 


Q ss_pred             --HhhcCCCeEEEeeccccCCh
Q 020549          227 --LYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       227 --~~~~~~p~ilv~NK~Dl~~~  246 (324)
                        ......|++|++||.|+...
T Consensus       106 ~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen  106 TEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             HHCCTT--EEEEEEE-TTSTT-
T ss_pred             hhhccCCCCEEEEEeCcccccc
Confidence              12467899999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.8e-11  Score=119.51  Aligned_cols=135  Identities=21%  Similarity=0.199  Sum_probs=83.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCc-ccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~  145 (324)
                      .+...|+|+|+.++|||||..+|+-..........+...         .+..|.....      .+.|+-.... +.+. 
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---------~~~~D~~e~E------qeRGITI~saa~s~~-   71 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---------AATMDWMEQE------QERGITITSAATTLF-   71 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---------CccCCCcHHH------HhcCCEEeeeeeEEE-
Confidence            345669999999999999999998765544331111100         0011100000      0111111111 1111 


Q ss_pred             cccChHHHHHHHHHHHHhC-CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                       +. ...+.|+||||+.+|-  .    .+.+.++  .+|.+|.|+|+.+++.+++..     .+
T Consensus        72 -----------------~~~~~~iNlIDTPGHVDFt--~----EV~rslr--vlDgavvVvdaveGV~~QTEt-----v~  121 (697)
T COG0480          72 -----------------WKGDYRINLIDTPGHVDFT--I----EVERSLR--VLDGAVVVVDAVEGVEPQTET-----VW  121 (697)
T ss_pred             -----------------EcCceEEEEeCCCCccccH--H----HHHHHHH--hhcceEEEEECCCCeeecHHH-----HH
Confidence                             44 3899999999999982  2    2222222  258999999999999988732     23


Q ss_pred             HHHhhcCCCeEEEeeccccCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~  247 (324)
                      +.+...++|.++++||+|....+
T Consensus       122 rqa~~~~vp~i~fiNKmDR~~a~  144 (697)
T COG0480         122 RQADKYGVPRILFVNKMDRLGAD  144 (697)
T ss_pred             HHHhhcCCCeEEEEECccccccC
Confidence            56677899999999999998754

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.33  E-value=2.8e-11  Score=110.97  Aligned_cols=179  Identities=13%  Similarity=0.060  Sum_probs=84.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+..|+|+|.+|+|||||||+|.|-.....+...+     ++.   .+|.    ..                ..+..   
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t-----Gv~---etT~----~~----------------~~Y~~---   82 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPT-----GVV---ETTM----EP----------------TPYPH---   82 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S-----SSH---SCCT----S-----------------EEEE----
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC-----CCC---cCCC----CC----------------eeCCC---
Confidence            56789999999999999999998753332111100     010   0110    00                00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     ...+.+.|||.||+.....  . .....+.+.-...|+++++.+.+-  ...+     ...+..+
T Consensus        83 ---------------p~~pnv~lWDlPG~gt~~f--~-~~~Yl~~~~~~~yD~fiii~s~rf--~~nd-----v~La~~i  137 (376)
T PF05049_consen   83 ---------------PKFPNVTLWDLPGIGTPNF--P-PEEYLKEVKFYRYDFFIIISSERF--TEND-----VQLAKEI  137 (376)
T ss_dssp             ---------------SS-TTEEEEEE--GGGSS-----HHHHHHHTTGGG-SEEEEEESSS----HHH-----HHHHHHH
T ss_pred             ---------------CCCCCCeEEeCCCCCCCCC--C-HHHHHHHccccccCEEEEEeCCCC--chhh-----HHHHHHH
Confidence                           2246899999999755311  1 111111111133487777666532  2222     3334667


Q ss_pred             hhcCCCeEEEeeccccC-ChH------hH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc-
Q 020549          228 YKTRLPLVLAFNKTDVA-QHE------FA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-  297 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~-~~~------~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~-  297 (324)
                      .+.++|+.+|-+|+|.. ..+      ..  .+.++.++.   .          ..+.+.   ..-....+||-+|+.. 
T Consensus       138 ~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~---~----------c~~~L~---k~gv~~P~VFLVS~~dl  201 (376)
T PF05049_consen  138 QRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE---N----------CLENLQ---KAGVSEPQVFLVSSFDL  201 (376)
T ss_dssp             HHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH---H----------HHHHHH---CTT-SS--EEEB-TTTT
T ss_pred             HHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH---H----------HHHHHH---HcCCCcCceEEEeCCCc
Confidence            78899999999999961 111      00  111112110   0          000000   0111235789999987 


Q ss_pred             -CCChHHHHHHHHHHHHHHHHh
Q 020549          298 -GAGIEAYFKAVEESAQEFMET  318 (324)
Q Consensus       298 -g~gv~~l~~~i~~~~~~~~~~  318 (324)
                       ...+..|.+.|.+.+|...+.
T Consensus       202 ~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  202 SKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             TSTTHHHHHHHHHHHS-GGGHH
T ss_pred             ccCChHHHHHHHHHHhHHHHHH
Confidence             467888999999988875543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.31  E-value=1.1e-11  Score=101.74  Aligned_cols=151  Identities=15%  Similarity=0.222  Sum_probs=80.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .++++|+.|+|||||+++++....  +..+.++..+.+..      .+|-....  ..-..-.. -.+||+||+.   ..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~------~~d~~~~~--~~~~~v~~-l~~GCiCC~~---~~   67 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEV------GIDNQLVV--DTDEEIIE-MNNGCICCTV---RG   67 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCcc------chhHHHHh--CCCceEEE-eCCCEeEeeC---ch
Confidence            578999999999999999998743  33344433332211      11110000  00001111 2457899873   33


Q ss_pred             HHHHHH----HHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHH-Hhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          151 KFDEVI----SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA-FAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       151 ~~~~~~----~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~-~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      .+...+    ..+......++++|+||||.+++..  .....+.+. +.. ...|.++++||+..........   -   
T Consensus        68 ~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~--~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~---~---  139 (158)
T cd03112          68 DLIRALLDLLERLDAGKIAFDRIVIETTGLADPGP--VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ---T---  139 (158)
T ss_pred             hHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHH--HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc---H---
Confidence            333333    2222223478999999999987621  111111111 111 2358999999986544322111   0   


Q ss_pred             HHHhhcCCCeEEEeecccc
Q 020549          225 SILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ....+....-++|+||+|+
T Consensus       140 ~~~~Qi~~ad~ivlnk~dl  158 (158)
T cd03112         140 EAQSQIAFADRILLNKTDL  158 (158)
T ss_pred             HHHHHHHHCCEEEEecccC
Confidence            0112223344899999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=8.2e-12  Score=100.22  Aligned_cols=122  Identities=16%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.|||.-||...  ++.    -..+.  ..+..++|+||+...-.-+............-...+.|+++.+||-|+.
T Consensus        68 ~~~l~fwdlgGQe~l--rSl----w~~yY--~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q  139 (197)
T KOG0076|consen   68 NAPLSFWDLGGQESL--RSL----WKKYY--WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ  139 (197)
T ss_pred             cceeEEEEcCChHHH--HHH----HHHHH--HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh
Confidence            567899999998664  111    01111  2357999999997643222111111222223334689999999999998


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                      +.-...++...+.. .+.+                    --+..++.||||.+|+||++-..++...++..
T Consensus       140 ~~~~~~El~~~~~~-~e~~--------------------~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  140 NAMEAAELDGVFGL-AELI--------------------PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhHHHHHHHhhh-hhhc--------------------CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            76544444332221 1100                    01346899999999999999999999988765

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=6.5e-11  Score=101.66  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC---------------cccccccccccc----hh-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------------AVMTLPFAANID----IR-----  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~---------------~~~~~~~~~~~~----~~-----  121 (324)
                      ...+.+|+|+|++|||||||+|.+.|-..+..+.+.+.+...               .....+...++.    ..     
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~  105 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKA  105 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchH
Confidence            457888999999999999999999999888777666655432               111111111111    11     


Q ss_pred             -cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHHHhccC
Q 020549          122 -DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFASTF  197 (324)
Q Consensus       122 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~~~~~~  197 (324)
                       ......++++.+||.......+.  ++|.||+|++.++++....+++++.|.| |--+..++......+.+.+....
T Consensus       106 e~~~~a~~~L~~VgL~~~~~~~P~--qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~  181 (248)
T COG1116         106 EARERAKELLELVGLAGFEDKYPH--QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR  181 (248)
T ss_pred             hHHHHHHHHHHHcCCcchhhcCcc--ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence             12257788999999876665554  7999999999999999999999999999 66676677777777777776544

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=6.8e-11  Score=107.91  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=82.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc--ccccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL--TSLNL  147 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~  147 (324)
                      ...+||-+|.||||||...|+-....+..-.++-+..              ..+....+||+.-.   ..||.  .+.-+
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk--------------~~~~a~SDWM~iEk---qRGISVtsSVMq   75 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK--------------SGKHAKSDWMEIEK---QRGISVTSSVMQ   75 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc--------------CCcccccHHHHHHH---hcCceEEeeEEE
Confidence            4479999999999999998875544332222221110              01111234443211   11322  22111


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      |.             ..+..+.|+||||+++|..  .-.+ .+     +-.|.+|.|||+..|.++++.     +....+
T Consensus        76 F~-------------Y~~~~iNLLDTPGHeDFSE--DTYR-tL-----tAvDsAvMVIDaAKGiE~qT~-----KLfeVc  129 (528)
T COG4108          76 FD-------------YADCLVNLLDTPGHEDFSE--DTYR-TL-----TAVDSAVMVIDAAKGIEPQTL-----KLFEVC  129 (528)
T ss_pred             ec-------------cCCeEEeccCCCCccccch--hHHH-HH-----HhhheeeEEEecccCccHHHH-----HHHHHH
Confidence            21             3467889999999999721  1111 11     124899999999999998872     233556


Q ss_pred             hhcCCCeEEEeeccccCChH
Q 020549          228 YKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~  247 (324)
                      +..++|++-.+||+|....+
T Consensus       130 rlR~iPI~TFiNKlDR~~rd  149 (528)
T COG4108         130 RLRDIPIFTFINKLDREGRD  149 (528)
T ss_pred             hhcCCceEEEeeccccccCC
Confidence            66899999999999998754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.30  E-value=6.1e-11  Score=108.61  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=54.1

Q ss_pred             cCCcEEEEEE-cCCCC-CCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhH
Q 020549          196 TFPTVVTYVV-DTPRS-ANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTL  273 (324)
Q Consensus       196 ~~~d~iv~vv-D~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l  273 (324)
                      ..+|+.++|. |++-+ .....+.......+..++..++|+|+|+||+|-...+ ..++.+.+.                
T Consensus       143 dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~e-t~~l~~~l~----------------  205 (492)
T TIGR02836       143 EHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPE-TEALRQELE----------------  205 (492)
T ss_pred             hcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCch-hHHHHHHHH----------------
Confidence            3578988888 66421 1122233444555677888999999999999944333 112222221                


Q ss_pred             HHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549          274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       274 ~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                               +.+. .+++++|+.+- .-+++...+.+.+.++|
T Consensus       206 ---------eky~-vpvl~v~c~~l-~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       206 ---------EKYD-VPVLAMDVESM-RESDILSVLEEVLYEFP  237 (492)
T ss_pred             ---------HHhC-CceEEEEHHHc-CHHHHHHHHHHHHhcCC
Confidence                     2222 68888888763 34555555555555444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.29  E-value=1.4e-12  Score=105.73  Aligned_cols=166  Identities=19%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...-+++.|+|..|+|||+++.+++...|+..++.+|                      .+.-.+.-+.           
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI----------------------gvdfalkVl~-----------   68 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI----------------------GVDFALKVLQ-----------   68 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHH----------------------hHHHHHHHhc-----------
Confidence            3456789999999999999999999998876553322                      1110010000           


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcch------hhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHh
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI------FTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN  219 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~------~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~  219 (324)
                        +..            ....+++|||.+||++|      |++.+.+            ..+||.|..+..+++...|.+
T Consensus        69 --wdd------------~t~vRlqLwdIagQerfg~mtrVyykea~~------------~~iVfdvt~s~tfe~~skwkq  122 (229)
T KOG4423|consen   69 --WDD------------KTIVRLQLWDIAGQERFGNMTRVYYKEAHG------------AFIVFDVTRSLTFEPVSKWKQ  122 (229)
T ss_pred             --cCh------------HHHHHHHHhcchhhhhhcceEEEEecCCcc------------eEEEEEccccccccHHHHHHH
Confidence              000            11235679999999987      2333333            367777777767777777765


Q ss_pred             HHHH-HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549          220 MLYA-CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (324)
Q Consensus       220 ~~~~-~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g  298 (324)
                      .+.. +..-.....|+|+..||||+.+..... .-..+..+.                      .-..+...+++|||.+
T Consensus       123 dldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~f~----------------------kengf~gwtets~Ken  179 (229)
T KOG4423|consen  123 DLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDNFK----------------------KENGFEGWTETSAKEN  179 (229)
T ss_pred             hccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHHHH----------------------hccCccceeeeccccc
Confidence            4421 111223457889999999987654221 111121111                      1124567888999999


Q ss_pred             CChHHHHHHHHHHHH
Q 020549          299 AGIEAYFKAVEESAQ  313 (324)
Q Consensus       299 ~gv~~l~~~i~~~~~  313 (324)
                      .|+++....+++.+.
T Consensus       180 kni~Ea~r~lVe~~l  194 (229)
T KOG4423|consen  180 KNIPEAQRELVEKIL  194 (229)
T ss_pred             cChhHHHHHHHHHHH
Confidence            999999999998764

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.28  E-value=3.5e-11  Score=104.19  Aligned_cols=171  Identities=18%  Similarity=0.285  Sum_probs=91.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      ||.++|+.|+||||..+.+.+...+..-           ....  ++.++..                 ..+.    +  
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-----------~~L~--~T~~ve~-----------------~~v~----~--   44 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-----------LRLE--PTIDVEK-----------------SHVR----F--   44 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-----------GG-------SEEE-----------------EEEE----C--
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-----------cccC--CcCCceE-----------------EEEe----c--
Confidence            6899999999999999999887554210           0000  0111000                 0000    0  


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh--hhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                  .....+.+||.|||..+....  ....   ..+  ..+.++|||+|+...-  .+.......+..+. 
T Consensus        45 ------------~~~~~l~iwD~pGq~~~~~~~~~~~~~---~if--~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~-  106 (232)
T PF04670_consen   45 ------------LSFLPLNIWDCPGQDDFMENYFNSQRE---EIF--SNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR-  106 (232)
T ss_dssp             ------------TTSCEEEEEEE-SSCSTTHTTHTCCHH---HHH--CTESEEEEEEETT-STCHHHHHHHHHHHHHHH-
T ss_pred             ------------CCCcEEEEEEcCCccccccccccccHH---HHH--hccCEEEEEEEcccccHHHHHHHHHHHHHHHH-
Confidence                        125688999999998763210  1111   112  2347999999998321  11223333333322 


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ....+..+.+.++|+|++..+...+..+......             .+...    +.. ....++.+|--. +.+-+.|
T Consensus       107 ~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i-------------~~~~~----~~~~~~~~~~~TSI~D-~Sly~A~  168 (232)
T PF04670_consen  107 QYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI-------------RDELE----DLGIEDITFFLTSIWD-ESLYEAW  168 (232)
T ss_dssp             HHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH-------------HHHHH----HTT-TSEEEEEE-TTS-THHHHHH
T ss_pred             HhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH-------------HHHhh----hccccceEEEeccCcC-cHHHHHH
Confidence            2245788999999999998876655544443111             11111    111 136778888877 5788888


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      ..|+..+-
T Consensus       169 S~Ivq~Li  176 (232)
T PF04670_consen  169 SKIVQKLI  176 (232)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHHHc
Confidence            88877653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>smart00053 DYNc Dynamin, GTPase

Probab=99.27  E-value=1.2e-10  Score=101.51  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCCcchhhh---hhhHHHHHH---HHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTW---SASGAIITE---AFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~---~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  238 (324)
                      .+++.|+||||.......   ......+.+   .+.....+++++|+|+...+...+.    +..++.+...+.|+++|+
T Consensus       124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~----l~ia~~ld~~~~rti~Vi  199 (240)
T smart00053      124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA----LKLAKEVDPQGERTIGVI  199 (240)
T ss_pred             CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH----HHHHHHHHHcCCcEEEEE
Confidence            478999999998542100   111122222   2222345799999999887765541    233355667889999999


Q ss_pred             eccccCChH
Q 020549          239 NKTDVAQHE  247 (324)
Q Consensus       239 NK~Dl~~~~  247 (324)
                      ||+|..+..
T Consensus       200 TK~D~~~~~  208 (240)
T smart00053      200 TKLDLMDEG  208 (240)
T ss_pred             ECCCCCCcc
Confidence            999998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=99.27  E-value=2.3e-11  Score=105.87  Aligned_cols=182  Identities=19%  Similarity=0.229  Sum_probs=106.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHH----HHHHHHHHcCCCCCCcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI----RYKEVMKQFNLGPNGGI  141 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~  141 (324)
                      ..+-+.-+|.|+.|||||||+|.++.....  .+++++-+       .++...++....    ...+..+++-.-.|||.
T Consensus        54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~hg--KRIAVIlN-------EfGes~die~sl~~~~~gg~lyEewv~L~NGCl  124 (391)
T KOG2743|consen   54 GARIPVTIITGYLGAGKTTLLNYILTGQHG--KRIAVILN-------EFGESSDIEKSLAVSQEGGELYEEWVELRNGCL  124 (391)
T ss_pred             CCccceEEEEecccCChHHHHHHHHccCCC--ceEEEEhh-------hcccchhhhHHHHhccccchHHHHHHHhcCCeE
Confidence            456677899999999999999999886543  34444322       233333332221    11233344444468999


Q ss_pred             cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCch------
Q 020549          142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPM------  214 (324)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~------  214 (324)
                      ||++   .....+.++.+....+.++.+++.|.|+..+.. -+...+.-..+.+ ..-|.+|-|||+.+.....      
T Consensus       125 CCtV---k~~gvraie~lvqkkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~  200 (391)
T KOG2743|consen  125 CCTV---KDNGVRAIENLVQKKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPD  200 (391)
T ss_pred             EEEe---cchHHHHHHHHHhcCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcc
Confidence            9984   344445555555567789999999999988621 0011112222222 2348999999997654322      


Q ss_pred             hHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH---HHHHHHhcC
Q 020549          215 TFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE---VFQAAISSD  266 (324)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~---~l~~~~~~~  266 (324)
                      .+|.+-.   .   +....--+++||.|+++.+....+.+.++   +++..+...
T Consensus       201 g~i~EA~---~---QiA~AD~II~NKtDli~~e~~~~l~q~I~~INslA~m~~Tk  249 (391)
T KOG2743|consen  201 GLINEAT---R---QIALADRIIMNKTDLVSEEEVKKLRQRIRSINSLAQMIETK  249 (391)
T ss_pred             cchHHHH---H---HHhhhheeeeccccccCHHHHHHHHHHHHHhhhHHHhhhhh
Confidence            2333211   1   12223368899999999877655555444   444444333

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=3.5e-11  Score=104.58  Aligned_cols=182  Identities=17%  Similarity=0.206  Sum_probs=104.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +....|+.||+.+.|||||..+|+......+.....     ....+...+    ..+        ..|+-.|.....   
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~-----~y~~id~aP----eEk--------~rGITIntahve---   69 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAK-----AYDQIDNAP----EEK--------ARGITINTAHVE---   69 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhcccccc-----chhhhccCc----hHh--------hcCceeccceeE---
Confidence            345679999999999999999998875433211100     000000000    000        111111111110   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                       +             .-.+..+-.+|+||+.++-.      .|...  ....|.+++||.+.++..+++.-     ++..
T Consensus        70 -y-------------et~~rhyahVDcPGHaDYvK------NMItg--AaqmDgAILVVsA~dGpmPqTrE-----HiLl  122 (394)
T COG0050          70 -Y-------------ETANRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVAATDGPMPQTRE-----HILL  122 (394)
T ss_pred             -E-------------ecCCceEEeccCCChHHHHH------HHhhh--HHhcCccEEEEEcCCCCCCcchh-----hhhh
Confidence             0             02366888999999877622      11111  12358999999999999998733     2334


Q ss_pred             HhhcCCCeEE-EeeccccCChHhHHHHHH-hHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccC-C---
Q 020549          227 LYKTRLPLVL-AFNKTDVAQHEFALEWMQ-DFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSG-A---  299 (324)
Q Consensus       227 ~~~~~~p~il-v~NK~Dl~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g-~---  299 (324)
                      ..+.+.|.|+ ++||+|+++..+..++.+ +++.|+...                   .|. ...|++.-||+.- +   
T Consensus       123 arqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y-------------------~f~gd~~Pii~gSal~ale~~~  183 (394)
T COG0050         123 ARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY-------------------GFPGDDTPIIRGSALKALEGDA  183 (394)
T ss_pred             hhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc-------------------CCCCCCcceeechhhhhhcCCc
Confidence            5667887655 899999999766554443 333333211                   121 2468888888763 2   


Q ss_pred             ----ChHHHHHHHHHHHHH
Q 020549          300 ----GIEAYFKAVEESAQE  314 (324)
Q Consensus       300 ----gv~~l~~~i~~~~~~  314 (324)
                          .|.+|++++..+++.
T Consensus       184 ~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         184 KWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             chHHHHHHHHHHHHhcCCC
Confidence                356777777766653

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=99.26  E-value=2.3e-11  Score=101.98  Aligned_cols=151  Identities=20%  Similarity=0.266  Sum_probs=83.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcC----CCCCCcccccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGILTSL  145 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~  145 (324)
                      +.++|.|+.|||||||+++++. ....+.++.++.++.+...+      |       .+.+...+    .-.+||+||+ 
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~i------D-------~~~l~~~~~~v~~l~~gcicc~-   65 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNI------D-------AELLQEDGVPVVELNNGCICCT-   65 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHH------H-------HHHHHTTT-EEEEECTTTESS--
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccccc------c-------hhhhcccceEEEEecCCCcccc-
Confidence            3588999999999999999997 45556666666555543211      1       11122222    2235788886 


Q ss_pred             cccChHHHHHHHHHHHHh-CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRA-DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                        +...+...+..+.... ..++++|+.+.|..++...    ......+.. ...+.++.|||+...... .....    
T Consensus        66 --~~~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l----~~~~~~~~~~~~~~~iI~vVDa~~~~~~-~~~~~----  134 (178)
T PF02492_consen   66 --LRDDLVEALRRLLREYEERPDRIIIETSGLADPAPL----ILQDPPLKEDFRLDSIITVVDATNFDEL-ENIPE----  134 (178)
T ss_dssp             --TTS-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGH----HHHSHHHHHHESESEEEEEEEGTTHGGH-TTHCH----
T ss_pred             --cHHHHHHHHHHHHHhcCCCcCEEEECCccccccchh----hhccccccccccccceeEEecccccccc-ccchh----
Confidence              3333333333222111 2579999999998776332    001111211 234789999999664211 11111    


Q ss_pred             HHHHhhcCCCeEEEeeccccCChH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~  247 (324)
                       ....+....-++|+||+|+++.+
T Consensus       135 -~~~~Qi~~ADvIvlnK~D~~~~~  157 (178)
T PF02492_consen  135 -LLREQIAFADVIVLNKIDLVSDE  157 (178)
T ss_dssp             -HHHHHHCT-SEEEEE-GGGHHHH
T ss_pred             -hhhhcchhcCEEEEeccccCChh
Confidence             11233445569999999999876

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=2.4e-12  Score=104.69  Aligned_cols=162  Identities=20%  Similarity=0.233  Sum_probs=104.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++++++|..|.||||++++.+...|...+.+++     ++...|..-    .               .+         
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~-----Gv~~~pl~f----~---------------tn---------   55 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATL-----GVEVHPLLF----D---------------TN---------   55 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcc-----eeEEeeeee----e---------------cc---------
Confidence            46889999999999999999999988887655433     222111110    0               00         


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .+.+++..|||+|++.+.-.. .+.     ..+..|.+++|.|.++........|...+.   ..
T Consensus        56 ---------------~g~irf~~wdtagqEk~gglr-dgy-----yI~~qcAiimFdVtsr~t~~n~~rwhrd~~---rv  111 (216)
T KOG0096|consen   56 ---------------RGQIRFNVWDTAGQEKKGGLR-DGY-----YIQGQCAIIMFDVTSRFTYKNVPRWHRDLV---RV  111 (216)
T ss_pred             ---------------cCcEEEEeeecccceeecccc-ccc-----EEecceeEEEeeeeehhhhhcchHHHHHHH---HH
Confidence                           113678899999998862111 111     111224466677777666666666654331   22


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                       ..++|+++++||.|..........+...                           ......++++||+++.|++.=|-.
T Consensus       112 -~~NiPiv~cGNKvDi~~r~~k~k~v~~~---------------------------rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen  112 -RENIPIVLCGNKVDIKARKVKAKPVSFH---------------------------RKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             -hcCCCeeeeccceeccccccccccceee---------------------------ecccceeEEeecccccccccchHH
Confidence             2459999999999987654211111111                           123578999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      +.+.+..
T Consensus       164 LarKl~G  170 (216)
T KOG0096|consen  164 LARKLTG  170 (216)
T ss_pred             HhhhhcC
Confidence            9987753

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=6e-11  Score=98.64  Aligned_cols=182  Identities=18%  Similarity=0.298  Sum_probs=101.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..|.++|+.++|||+|+-.|.......    +       ++++.                       +|.+...      
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~----T-------vtSie-----------------------pn~a~~r------   78 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRG----T-------VTSIE-----------------------PNEATYR------   78 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccC----e-------eeeec-----------------------cceeeEe------
Confidence            459999999999999999998874331    1       11111                       1111111      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH-
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~-  227 (324)
                                   .+.-...++|.||+.+.      ...+..++.. ..+-.+|||||+.....+.....+++..+-.- 
T Consensus        79 -------------~gs~~~~LVD~PGH~rl------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~  139 (238)
T KOG0090|consen   79 -------------LGSENVTLVDLPGHSRL------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDS  139 (238)
T ss_pred             -------------ecCcceEEEeCCCcHHH------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhh
Confidence                         11334789999997554      3345555543 24568999999988776665444444322221 


Q ss_pred             --hhcCCCeEEEeeccccCChH---hHHHHHH-hHHHHHHHHhcCcc-chhhHHH-----HHHH--hHHHHh-ccCceee
Q 020549          228 --YKTRLPLVLAFNKTDVAQHE---FALEWMQ-DFEVFQAAISSDHS-YTSTLTN-----SLSL--ALDEFY-KNLKSVG  292 (324)
Q Consensus       228 --~~~~~p~ilv~NK~Dl~~~~---~~~~~~~-~~~~l~~~~~~~~~-~~~~l~~-----~~~~--~~~~~~-~~~~iv~  292 (324)
                        .....|++++.||.|+....   .++..++ ++..+.+.-+.-+. ...+.++     ..+.  .+.+.. ..+.+.+
T Consensus       140 ~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e  219 (238)
T KOG0090|consen  140 RVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAE  219 (238)
T ss_pred             ccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEee
Confidence              24678999999999997542   2222222 33333221110000 0000000     0000  011111 2357889


Q ss_pred             eccccCCChHHHHHHHHHH
Q 020549          293 VSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       293 vSA~~g~gv~~l~~~i~~~  311 (324)
                      .|+++| +++++.++|.+.
T Consensus       220 ~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  220 ASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccCcC-ChHHHHHHHHHh
Confidence            999998 899999988765

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.7e-11  Score=99.87  Aligned_cols=162  Identities=19%  Similarity=0.253  Sum_probs=96.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+..+|+++|--||||||++..|-....... .+++   ..-++...                                
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTi---GfnVE~v~--------------------------------   57 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTI---GFNVETVE--------------------------------   57 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcc---ccceeEEE--------------------------------
Confidence            34557899999999999999999866544321 0000   00010000                                


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       .++..+.+||..||..+..  .    -..++  ...+.+|||||+.+...-.. ....+.  .
T Consensus        58 -----------------ykn~~f~vWDvGGq~k~R~--l----W~~Y~--~~t~~lIfVvDS~Dr~Ri~e-ak~eL~--~  109 (181)
T KOG0070|consen   58 -----------------YKNISFTVWDVGGQEKLRP--L----WKHYF--QNTQGLIFVVDSSDRERIEE-AKEELH--R  109 (181)
T ss_pred             -----------------EcceEEEEEecCCCccccc--c----hhhhc--cCCcEEEEEEeCCcHHHHHH-HHHHHH--H
Confidence                             2377899999999976511  1    11111  23479999999976432211 111121  2


Q ss_pred             HHhh---cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCCh
Q 020549          226 ILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       226 ~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv  301 (324)
                      .+..   .+.|+++..||.|+...-...++...+. +.                      .. ...-.+-.++|.+|+|+
T Consensus       110 ~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~-l~----------------------~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen  110 MLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG-LH----------------------SLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             HHcCcccCCceEEEEechhhccccCCHHHHHhHhh-hh----------------------ccCCCCcEEeeccccccccH
Confidence            2222   4689999999999986532222222111 00                      00 01245778999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQE  314 (324)
Q Consensus       302 ~~l~~~i~~~~~~  314 (324)
                      .+-++.|...+..
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.25  E-value=3.9e-10  Score=102.57  Aligned_cols=154  Identities=16%  Similarity=0.190  Sum_probs=84.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..++++|++|+||||++..|.......++.+.+++.|+.-.          ........+.+..++    .++....
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~----------~a~eql~~~a~~~~i----~~~~~~~  177 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA----------AAIEQLQVWGERVGV----PVIAQKE  177 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch----------hhHHHHHHHHHHcCc----eEEEeCC
Confidence            45778999999999999999999998777777888877665211          000001111112221    1111100


Q ss_pred             ccCh--HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh------ccCCcEEEEEEcCCCCCCchhHHH
Q 020549          147 LFTT--KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA------STFPTVVTYVVDTPRSANPMTFMS  218 (324)
Q Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~------~~~~d~iv~vvD~~~~~~~~~~~~  218 (324)
                      ....  .....  .......+++++|+||||....  .......+.+..+      ...++-.++|+|+..+....... 
T Consensus       178 ~~dpa~~v~~~--l~~~~~~~~D~ViIDTaGr~~~--~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-  252 (318)
T PRK10416        178 GADPASVAFDA--IQAAKARGIDVLIIDTAGRLHN--KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-  252 (318)
T ss_pred             CCCHHHHHHHH--HHHHHhCCCCEEEEeCCCCCcC--CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-
Confidence            0000  01111  1222346789999999996553  2222223333221      23457889999998655433321 


Q ss_pred             hHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          219 NMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       219 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                            ......--+.-+|+||+|...
T Consensus       253 ------~~f~~~~~~~giIlTKlD~t~  273 (318)
T PRK10416        253 ------KAFHEAVGLTGIILTKLDGTA  273 (318)
T ss_pred             ------HHHHhhCCCCEEEEECCCCCC
Confidence                  111111234579999999554

>PRK14974 cell division protein FtsY; Provisional

Probab=99.23  E-value=7.3e-10  Score=101.18  Aligned_cols=157  Identities=18%  Similarity=0.191  Sum_probs=84.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+++|++|+||||++..|.......+..+.+++.|....          .....+..+.+.+++....+.... +
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~----------~a~eqL~~~a~~lgv~v~~~~~g~-d  206 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA----------GAIEQLEEHAERLGVKVIKHKYGA-D  206 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH----------HHHHHHHHHHHHcCCceecccCCC-C
Confidence            34678999999999999999999887655556666655442110          111122233334443211110000 0


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                       ........+..+.  ..+.+++|+||||....  .......+....+...+|.+++|+|+..+.+.....       ..
T Consensus       207 -p~~v~~~ai~~~~--~~~~DvVLIDTaGr~~~--~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-------~~  274 (336)
T PRK14974        207 -PAAVAYDAIEHAK--ARGIDVVLIDTAGRMHT--DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-------RE  274 (336)
T ss_pred             -HHHHHHHHHHHHH--hCCCCEEEEECCCccCC--cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-------HH
Confidence             0011122223332  34678999999996542  222333444444445578999999997654222211       22


Q ss_pred             HhhcCCCeEEEeeccccCCh
Q 020549          227 LYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ....--.--+++||+|....
T Consensus       275 f~~~~~~~giIlTKlD~~~~  294 (336)
T PRK14974        275 FNEAVGIDGVILTKVDADAK  294 (336)
T ss_pred             HHhcCCCCEEEEeeecCCCC
Confidence            22212235789999998653

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.22  E-value=6.5e-11  Score=111.48  Aligned_cols=168  Identities=17%  Similarity=0.188  Sum_probs=100.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+..+|+|+|..|+|||||+.+|+...+...-.       +....+....+                        ++  
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP-------~rl~~i~IPad------------------------vt--   52 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP-------RRLPRILIPAD------------------------VT--   52 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhcccccc-------ccCCccccCCc------------------------cC--
Confidence            3467889999999999999999999998864210       00111100000                        00  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~  224 (324)
                                       .......|+||+.-.+-      ...+.+.++++..-+++|-+|..+..+.. .+|..++...
T Consensus        53 -----------------Pe~vpt~ivD~ss~~~~------~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~  109 (625)
T KOG1707|consen   53 -----------------PENVPTSIVDTSSDSDD------RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQL  109 (625)
T ss_pred             -----------------cCcCceEEEecccccch------hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcc
Confidence                             22456789999853332      22334444444334555556665555544 4787665321


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      . -...+.|+|+|+||+|.......  ..+.                    ....++.+|.+--.+|.|||++-.++.++
T Consensus       110 ~-~~~~~~PVILvGNK~d~~~~~~~--s~e~--------------------~~~pim~~f~EiEtciecSA~~~~n~~e~  166 (625)
T KOG1707|consen  110 F-GDYHETPVILVGNKSDNGDNENN--SDEV--------------------NTLPIMIAFAEIETCIECSALTLANVSEL  166 (625)
T ss_pred             c-CCCccCCEEEEeeccCCcccccc--chhH--------------------HHHHHHHHhHHHHHHHhhhhhhhhhhHhh
Confidence            1 01257999999999999865432  0000                    00111223444456889999999999999


Q ss_pred             HHHHHHHH
Q 020549          305 FKAVEESA  312 (324)
Q Consensus       305 ~~~i~~~~  312 (324)
                      |....+.+
T Consensus       167 fYyaqKaV  174 (625)
T KOG1707|consen  167 FYYAQKAV  174 (625)
T ss_pred             hhhhhhee
Confidence            99888764

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=5.6e-11  Score=112.00  Aligned_cols=110  Identities=20%  Similarity=0.276  Sum_probs=67.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-----CCchhHHHhHHHHHHHHhhcCC-CeEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-----ANPMTFMSNMLYACSILYKTRL-PLVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-----~~~~~~~~~~~~~~~~~~~~~~-p~ilv~  238 (324)
                      ...+.|+|+||+.+|-. .+..       ..+.+|++++|||++.+     +.+.....++.   ..+...++ -+|+++
T Consensus       254 ~~~~tliDaPGhkdFi~-nmi~-------g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha---~llr~Lgi~qlivai  322 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIP-NMIS-------GASQADVAVLVVDASTGEFESGFDPGGQTREHA---LLLRSLGISQLIVAI  322 (603)
T ss_pred             ceeEEEecCCCccccch-hhhc-------cccccceEEEEEECCcchhhhccCCCCchHHHH---HHHHHcCcceEEEEe
Confidence            56788999999656522 1111       12457999999999864     33333444433   33444444 458899


Q ss_pred             eccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCChHH
Q 020549          239 NKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       239 NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~gv~~  303 (324)
                      ||+|+++  .++..++...+..++.+.                  ..|.+ .+.+||||+.+|+|+-.
T Consensus       323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~------------------~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  323 NKMDLVSWSQDRFEEIKNKLSSFLKES------------------CGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             ecccccCccHHHHHHHHHHHHHHHHHh------------------cCcccCCcceEecccccCCcccc
Confidence            9999986  455555555555443210                  02222 35899999999999765

>PTZ00416 elongation factor 2; Provisional

Probab=99.21  E-value=9e-11  Score=119.80  Aligned_cols=67  Identities=25%  Similarity=0.263  Sum_probs=49.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.|+||||+.+|..      .+...+  ..+|.+|+|||+..++..++..     .++.+...++|+|+++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~------~~~~al--~~~D~ailVvda~~g~~~~t~~-----~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSS------EVTAAL--RVTDGALVVVDCVEGVCVQTET-----VLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHH------HHHHHH--hcCCeEEEEEECCCCcCccHHH-----HHHHHHHcCCCEEEEEEChhhh
Confidence            45689999999888622      121111  4469999999999998877632     2245556679999999999997

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=99.21  E-value=3.1e-10  Score=104.42  Aligned_cols=168  Identities=20%  Similarity=0.179  Sum_probs=95.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHH----HHHcCCCCCCccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV----MKQFNLGPNGGILTS  144 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~  144 (324)
                      .+..+|.|+.|||||||+|+++...  .+.++.++.++.+-..      +|- ..+.-...    .+.+-.-.|||+||+
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~~--~~~~iavi~Ne~G~~~------ID~-~ll~~~~~~~~~~~~v~el~nGCiCCs   74 (341)
T TIGR02475         4 IPVTIVTGFLGAGKTTLIRHLLQNA--AGRRIAVIVNEFGDLG------IDG-EILKACGIEGCSEENIVELANGCICCT   74 (341)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhcc--CCCcEEEEECCCcccc------chH-HHHhccccccCCcceEEEeCCCCcccc
Confidence            4568999999999999999999753  3455666555544322      210 01100000    012233468999997


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-----c-cCCcEEEEEEcCCCCCCch----
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-----S-TFPTVVTYVVDTPRSANPM----  214 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-----~-~~~d~iv~vvD~~~~~~~~----  214 (324)
                         +...+...+..+......++.++++|.|..++.       .+.+.+.     . ..-|.+|.|||+.......    
T Consensus        75 ---~~~dl~~~l~~l~~~~~~~d~IvIEtsG~a~P~-------~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~  144 (341)
T TIGR02475        75 ---VADDFIPTMTKLLARRQRPDHILIETSGLALPK-------PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAAD  144 (341)
T ss_pred             ---CcHHHHHHHHHHHhccCCCCEEEEeCCCCCCHH-------HHHHHhcCccccceEEeeeEEEEEECchhhhhccccc
Confidence               445555554444333347899999999988762       2222221     1 1247899999997543210    


Q ss_pred             -hH----H---------HhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH
Q 020549          215 -TF----M---------SNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (324)
Q Consensus       215 -~~----~---------~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~  257 (324)
                       ..    +         .....  ....+....-+||+||+|+++.+........++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~--~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~  199 (341)
T TIGR02475       145 PDALDAQRAADDNLDHETPLEE--LFEDQLACADLVILNKADLLDAAGLARVRAEIA  199 (341)
T ss_pred             hhhhhhhccccccccccchHHH--HHHHHHHhCCEEEEeccccCCHHHHHHHHHHHH
Confidence             00    0         00000  012333445599999999999876544444443

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.21  E-value=8.5e-11  Score=120.19  Aligned_cols=67  Identities=24%  Similarity=0.246  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.|+||||+.+|..      .+...+  ..+|.+++|||+.+++..++..     .++.+...++|+|+++||+|+.
T Consensus        97 ~~~inliDtPGh~dF~~------e~~~al--~~~D~ailVvda~~Gv~~~t~~-----~~~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSS------EVTAAL--RITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHH------HHHHHH--hhcCEEEEEEECCCCCcccHHH-----HHHHHHHCCCCEEEEEECCccc
Confidence            45678999999888732      121111  3469999999999999877622     2345566789999999999998

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.20  E-value=4.3e-10  Score=103.14  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+|+|+|.||||||||+|+|++..
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~   26 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG   26 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            679999999999999999999875

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=99.19  E-value=1.3e-10  Score=105.84  Aligned_cols=157  Identities=17%  Similarity=0.222  Sum_probs=87.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.+..+|.|+.|||||||+|+++...  .+.++.++.++.+..      .+| ...+.  ..-..+-.-.|||+||+   
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~--~~~riaVi~NEfG~v------~iD-~~ll~--~~~~~v~eL~~GCiCCs---   68 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEV------SVD-DQLIG--DRATQIKTLTNGCICCS---   68 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhcc--cCCcccccccCcCCc------ccc-HHHHh--CcCceEEEECCCEEEEc---
Confidence            34678999999999999999999753  344556655554322      122 00010  00011223457899997   


Q ss_pred             cChHHHHHHHHH-HHHh---CCCCEEEEeCCCCcchhhhhhhHHHH-H-HHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          148 FTTKFDEVISLI-ERRA---DHLDYVLVDTPGQIEIFTWSASGAII-T-EAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       148 ~~~~~~~~~~~~-~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~-~-~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                      +...+...+..+ ....   ..++.++++|.|..++..   ....+ . ..+.. ..-+.++.|||+.......+.... 
T Consensus        69 ~~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~---i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~-  144 (318)
T PRK11537         69 RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-  144 (318)
T ss_pred             cCchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHH---HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHH-
Confidence            334443333322 2111   258999999999877521   11111 0 01111 123789999999765433221110 


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChH
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~  247 (324)
                           ...+....-+||+||+|+++..
T Consensus       145 -----~~~Qi~~AD~IvlnK~Dl~~~~  166 (318)
T PRK11537        145 -----AQSQVGYADRILLTKTDVAGEA  166 (318)
T ss_pred             -----HHHHHHhCCEEEEeccccCCHH
Confidence                 1123334459999999999753

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.19  E-value=7.2e-11  Score=118.97  Aligned_cols=70  Identities=24%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +.+.++.||||||+.+|..      .+...+  ..+|++++|+|+..++..++.     ..+......++|.++|+||+|
T Consensus        83 ~~~~~i~liDTPG~~~f~~------~~~~al--~~aD~~llVvda~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD  149 (720)
T TIGR00490        83 GNEYLINLIDTPGHVDFGG------DVTRAM--RAVDGAIVVVCAVEGVMPQTE-----TVLRQALKENVKPVLFINKVD  149 (720)
T ss_pred             CCceEEEEEeCCCccccHH------HHHHHH--HhcCEEEEEEecCCCCCccHH-----HHHHHHHHcCCCEEEEEEChh
Confidence            3467899999999988621      122222  346999999999988766542     112334456789999999999


Q ss_pred             cCC
Q 020549          243 VAQ  245 (324)
Q Consensus       243 l~~  245 (324)
                      +..
T Consensus       150 ~~~  152 (720)
T TIGR00490       150 RLI  152 (720)
T ss_pred             ccc
Confidence            874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.6e-10  Score=102.12  Aligned_cols=215  Identities=15%  Similarity=0.150  Sum_probs=121.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+++++|-..+|||||+.-|.......+.--+-.+.-...+++.-+.+..+.        .+-+|+...+..+.    ++
T Consensus       168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis--------~evlGFd~~g~vVN----Y~  235 (591)
T KOG1143|consen  168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSIS--------NEVLGFDNRGKVVN----YA  235 (591)
T ss_pred             EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccc--------hhcccccccccccc----hh
Confidence            5799999999999999999988766654322222221112222111110000        11233333332222    11


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                      ..+  ..+.+.. ....-+.|+|.+|++++......      .+..--.+.+++||.+..+..+.+     .+++.....
T Consensus       236 ~~~--taEEi~e-~SSKlvTfiDLAGh~kY~~TTi~------gLtgY~Ph~A~LvVsA~~Gi~~tT-----rEHLgl~~A  301 (591)
T KOG1143|consen  236 QNM--TAEEIVE-KSSKLVTFIDLAGHAKYQKTTIH------GLTGYTPHFACLVVSADRGITWTT-----REHLGLIAA  301 (591)
T ss_pred             hcc--cHHHHHh-hhcceEEEeecccchhhheeeee------ecccCCCceEEEEEEcCCCCcccc-----HHHHHHHHH
Confidence            110  0111111 12345679999998776211111      111223589999999999987765     334466677


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc--CccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      .++|++++++|+|+.++.......+++..+++...-  .|.....-.+++....+.- ..-.||+.+|..+|+|++-|..
T Consensus       302 L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  302 LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            899999999999999987666677777766654422  2222222222222111111 2236999999999999988776


Q ss_pred             HHHH
Q 020549          307 AVEE  310 (324)
Q Consensus       307 ~i~~  310 (324)
                      .|.-
T Consensus       382 fLn~  385 (591)
T KOG1143|consen  382 FLNC  385 (591)
T ss_pred             HHhh
Confidence            6643

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=4.1e-10  Score=101.95  Aligned_cols=104  Identities=19%  Similarity=0.321  Sum_probs=64.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+++|+|.||||||||.|+++.....             ..+||++|                  +.||-|+..-.   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~-------------~aNYPF~T------------------IePN~Giv~v~---   47 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAE-------------IANYPFCT------------------IEPNVGVVYVP---   47 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCcc-------------ccCCCccc------------------ccCCeeEEecC---
Confidence            467999999999999999999987532             56777776                  23333333210   


Q ss_pred             ChHHHHHHHHHH--HHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCC
Q 020549          149 TTKFDEVISLIE--RRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTP  208 (324)
Q Consensus       149 ~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~  208 (324)
                      ......+.++..  .......+.|+|.||+..-...+ .++..++..++.  +|.++.|||+.
T Consensus        48 d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRe--vdaI~hVVr~f  108 (372)
T COG0012          48 DCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIRE--VDAIIHVVRCF  108 (372)
T ss_pred             chHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhh--cCeEEEEEEec
Confidence            000111000000  00113467899999987754333 367777666654  58999999985

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.15  E-value=2.9e-10  Score=100.02  Aligned_cols=28  Identities=21%  Similarity=0.455  Sum_probs=24.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.+|+|+|.+|||||||+|+|++...
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~   56 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERK   56 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4568899999999999999999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.14  E-value=4.6e-10  Score=100.43  Aligned_cols=27  Identities=22%  Similarity=0.497  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ...+|+++|.+|+||||++|+|++...
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v   63 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERI   63 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCc
Confidence            467899999999999999999998754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=2.1e-09  Score=93.46  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC-------cccccccccccch------------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFAANIDI------------------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~------------------  120 (324)
                      ..++.+++|+||+|||||||++.++|...+..+.+.+.+...       .+...|....+|-                  
T Consensus        27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~  106 (254)
T COG1121          27 VEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK  106 (254)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence            356678999999999999999999998777766666654421       1222233222321                  


Q ss_pred             --------hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              .+...+.++++..++.....  ..+..+|.|+.|++-++++...+++++++|.|=
T Consensus       107 g~~~~~~~~d~~~v~~aL~~Vgm~~~~~--r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~  167 (254)
T COG1121         107 GWFRRLNKKDKEKVDEALERVGMEDLRD--RQIGELSGGQKQRVLLARALAQNPDLLLLDEPF  167 (254)
T ss_pred             cccccccHHHHHHHHHHHHHcCchhhhC--CcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence                    12345667777777764322  333469999999999999999999999999984

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.12  E-value=4.7e-09  Score=93.61  Aligned_cols=157  Identities=18%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+++|++|+||||++..|.......++.+.++..|+...          ........+.+..++..-...... +
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~----------~a~~ql~~~~~~~~i~~~~~~~~~-d  138 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA----------AAIEQLEEWAKRLGVDVIKQKEGA-D  138 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH----------HHHHHHHHHHHhCCeEEEeCCCCC-C
Confidence            44678999999999999999999987766667788876664211          111122233333332110000000 0


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc------cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~------~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                       ........+..+  ...+.+++|+||||....  .......+.+....      ..+|-+++|+|+..+.......   
T Consensus       139 -p~~~~~~~l~~~--~~~~~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~---  210 (272)
T TIGR00064       139 -PAAVAFDAIQKA--KARNIDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA---  210 (272)
T ss_pred             -HHHHHHHHHHHH--HHCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH---
Confidence             001111112111  245789999999996543  11222222222221      2368899999997543322211   


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCCh
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      .   ...... -+.-+|+||+|....
T Consensus       211 ~---~f~~~~-~~~g~IlTKlDe~~~  232 (272)
T TIGR00064       211 K---VFNEAV-GLTGIILTKLDGTAK  232 (272)
T ss_pred             H---HHHhhC-CCCEEEEEccCCCCC
Confidence            1   111122 245889999998653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=4.4e-10  Score=87.50  Aligned_cols=119  Identities=17%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ++.++++||..|+.....      --+.++  +..|.++||||..+...-...-.+....+..-.-.+..+++++||.|.
T Consensus        60 KNLk~~vwdLggqtSirP------yWRcYy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~  131 (182)
T KOG0072|consen   60 KNLKFQVWDLGGQTSIRP------YWRCYY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY  131 (182)
T ss_pred             ccccceeeEccCcccccH------HHHHHh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc
Confidence            477899999999755310      111122  234799999998765432211111111111111234567889999998


Q ss_pred             CChHhHHHHHHhHH--HHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFE--VFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ...-...+....+.  .|.                        ..-..||.+||.+|+|+++.+++|.+.+.+
T Consensus       132 ~~~~t~~E~~~~L~l~~Lk------------------------~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  132 SGALTRSEVLKMLGLQKLK------------------------DRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             hhhhhHHHHHHHhChHHHh------------------------hheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            76543333332221  111                        123689999999999999999999987754

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.09  E-value=4e-09  Score=98.84  Aligned_cols=152  Identities=18%  Similarity=0.164  Sum_probs=84.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc-ccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL-TSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~  145 (324)
                      .++..|+++|++||||||++..|.......+..+.++..|+...    +          .-+.++.++-..  ++. ...
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~----a----------A~eQLk~~a~~~--~vp~~~~  161 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA----G----------AFDQLKQNATKA--RIPFYGS  161 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch----h----------HHHHHHHHhhcc--CCeEEee
Confidence            34678999999999999999999877665566777766554221    0          011111111110  110 000


Q ss_pred             cccCh--H-HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          146 NLFTT--K-FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       146 ~~~~~--~-~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                      ..-..  . ....+..+.  ..+.+++|+||||....  .......+.+......++.++||+|+..+.......     
T Consensus       162 ~~~~dp~~i~~~~l~~~~--~~~~DvViIDTaGr~~~--d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a-----  232 (429)
T TIGR01425       162 YTESDPVKIASEGVEKFK--KENFDIIIVDTSGRHKQ--EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA-----  232 (429)
T ss_pred             cCCCCHHHHHHHHHHHHH--hCCCCEEEEECCCCCcc--hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH-----
Confidence            00000  0 011122222  34789999999996543  233444555554445678999999998765443222     


Q ss_pred             HHHHHhhcCCCeEEEeeccccCC
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                        ..+...--+.-+|+||+|-..
T Consensus       233 --~~F~~~~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       233 --KAFKDSVDVGSVIITKLDGHA  253 (429)
T ss_pred             --HHHHhccCCcEEEEECccCCC
Confidence              222222235688999999653

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.09  E-value=1.5e-09  Score=98.01  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=81.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------cccccccc----------c----hh-
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAANI----------D----IR-  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~----------~----~~-  121 (324)
                      .+++..++++|++|||||||++.|++...+..+.+.+.+.++...         ..+..+.+          +    ++ 
T Consensus        28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~  107 (293)
T COG1131          28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG  107 (293)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhC
Confidence            456778999999999999999999999999888888887665431         11111111          0    11 


Q ss_pred             -----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ....+.++++.++|....  -.....||.||++++.++.+...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt  164 (293)
T COG1131         108 LSKEEAEERIEELLELFGLEDKA--NKKVRTLSGGMKQRLSIALALLHDPELLILDEPT  164 (293)
T ss_pred             CChhHHHHHHHHHHHHcCCchhh--CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence                 123567889999998733  2234469999999999999999999999999884

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.08  E-value=2.9e-09  Score=89.39  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=81.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc------------------cccccccc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT------------------LPFAANID--------  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~------------------~~~~~~~~--------  119 (324)
                      ..++.+++|+||+|+|||||+++|-+......+.+.+.+.+.....                  +|.-+-.+        
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~  104 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK  104 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence            4578889999999999999999999998888888888775442210                  11111000        


Q ss_pred             ------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       120 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                            -.......++++.+|+......++.  ++|.|++|++.++++...++++.++|.|-.
T Consensus       105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--qLSGGQqQRVAIARALaM~P~vmLFDEPTS  165 (240)
T COG1126         105 VKKLSKAEAREKALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTS  165 (240)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--ccCcHHHHHHHHHHHHcCCCCEEeecCCcc
Confidence                  0112244577889999887666654  799999999999999999999999999974

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.06  E-value=2.9e-09  Score=91.76  Aligned_cols=177  Identities=13%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+|+|.+|+||||++|.|++.......          ....+.+.......                 +   .      
T Consensus         2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~----------~~~~~~t~~~~~~~-----------------~---~------   45 (212)
T PF04548_consen    2 RILLLGKTGSGKSSLGNSILGKEVFKSG----------SSAKSVTQECQKYS-----------------G---E------   45 (212)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS-SS------------TTTSS--SS-EEEE-----------------E---E------
T ss_pred             EEEEECCCCCCHHHHHHHHhcccceeec----------cccCCcccccceee-----------------e---e------
Confidence            6899999999999999999987643210          00000010000000                 0   0      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                  ..+..+.++||||..+.... ......+.+.+..  ...++++||+... .+...+.  ..+..+..+
T Consensus        46 ------------~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~  110 (212)
T PF04548_consen   46 ------------VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEI  110 (212)
T ss_dssp             ------------ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHH
T ss_pred             ------------ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHH--HHHHHHHHH
Confidence                        23678999999998664221 1122334443332  2358999999887 4543331  112111222


Q ss_pred             hh--cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc------cCC
Q 020549          228 YK--TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV------SGA  299 (324)
Q Consensus       228 ~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~------~g~  299 (324)
                      -.  .-.-++||++.+|........+.++.-.                ...+..++...  +.+++.++.+      ...
T Consensus       111 FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~----------------~~~l~~li~~c--~~R~~~f~n~~~~~~~~~~  172 (212)
T PF04548_consen  111 FGEEIWKHTIVVFTHADELEDDSLEDYLKKES----------------NEALQELIEKC--GGRYHVFNNKTKDKEKDES  172 (212)
T ss_dssp             HCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHH----------------HHHHHHHHHHT--TTCEEECCTTHHHHHHHHH
T ss_pred             ccHHHHhHhhHHhhhccccccccHHHHHhccC----------------chhHhHHhhhc--CCEEEEEeccccchhhhHH
Confidence            11  2245788999999887665443333111                00011111111  2355656655      335


Q ss_pred             ChHHHHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQEFM  316 (324)
Q Consensus       300 gv~~l~~~i~~~~~~~~  316 (324)
                      .+.+|+..|.+.+.+..
T Consensus       173 qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  173 QVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            68888888888876644

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.05  E-value=3.8e-09  Score=90.50  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc------------------chhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI------------------DIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------~~~~-----  122 (324)
                      -+++..|+|+|++|||||||+|.+.+-..++.+.+.+.+.+....+......+                  .+.+     
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp  107 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP  107 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence            45778899999999999999999999988888777777654432211111100                  0111     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCc-ccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcc
Q 020549          123 -----------TIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE  178 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~  178 (324)
                                 ......+++.+++..... ..+  .++|.|++|++.++++...+++++|.|.| |--+
T Consensus       108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p--~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD  174 (226)
T COG1136         108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP--SELSGGQQQRVAIARALINNPKIILADEPTGNLD  174 (226)
T ss_pred             HHHcCCChhHHHHHHHHHHHhcCChhhhccCCc--hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence                       113445566667764333 222  36999999999999999999999999999 4434

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.6e-10  Score=99.60  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             CEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          167 DYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      .+.|+|+||+ +.        .|...+.. +..|.+++++.+.++.... +..+.+.....+.-  +-++++-||+|++.
T Consensus       126 HVSfVDCPGH-Di--------LMaTMLnGaAvmDaalLlIA~NEsCPQP-QTsEHLaaveiM~L--khiiilQNKiDli~  193 (466)
T KOG0466|consen  126 HVSFVDCPGH-DI--------LMATMLNGAAVMDAALLLIAGNESCPQP-QTSEHLAAVEIMKL--KHIIILQNKIDLIK  193 (466)
T ss_pred             EEEeccCCch-HH--------HHHHHhcchHHhhhhhhhhhcCCCCCCC-chhhHHHHHHHhhh--ceEEEEechhhhhh
Confidence            5679999994 32        12222221 2247888888887765332 23344444444433  34688999999999


Q ss_pred             hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHHHhhhc
Q 020549          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFMETYKY  321 (324)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~~~~~  321 (324)
                      .+...+..+++..+...                    ...+++|++|+||--+.||+.+.++|++.+|...++|.+
T Consensus       194 e~~A~eq~e~I~kFi~~--------------------t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s  249 (466)
T KOG0466|consen  194 ESQALEQHEQIQKFIQG--------------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTS  249 (466)
T ss_pred             HHHHHHHHHHHHHHHhc--------------------cccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCC
Confidence            88776666666644432                    234578999999999999999999999999877776643

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.02  E-value=2.2e-09  Score=88.71  Aligned_cols=69  Identities=25%  Similarity=0.311  Sum_probs=42.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~  241 (324)
                      ...+.|+||||......  .......+++  ..+|+++||+++...+...+ .   .............+++|+||+
T Consensus       100 ~~~~~lvDtPG~~~~~~--~~~~~~~~~~--~~~d~vi~V~~~~~~~~~~~-~---~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNS--EHTEITEEYL--PKADVVIFVVDANQDLTESD-M---EFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHT--TTSHHHHHHH--STTEEEEEEEETTSTGGGHH-H---HHHHHHHTTTCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchh--hhHHHHHHhh--ccCCEEEEEeccCcccchHH-H---HHHHHHhcCCCCeEEEEEcCC
Confidence            46789999999865321  1223344444  56799999999988665443 1   111133444555689999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.00  E-value=8.1e-10  Score=87.13  Aligned_cols=170  Identities=17%  Similarity=0.170  Sum_probs=98.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      -..+|+++|++-.|||||+-.+.+..+...+..              +.                       |+.+-...
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q--------------~~-----------------------GvN~mdkt   61 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQ--------------TL-----------------------GVNFMDKT   61 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHH--------------Hh-----------------------CccceeeE
Confidence            357899999999999999999988765432110              00                       11110000


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      ++-           .+....+.|||..|++++...-...+        ..+-+++|+.|-.....- ....+....++..
T Consensus        62 ~~i-----------~~t~IsfSIwdlgG~~~~~n~lPiac--------~dsvaIlFmFDLt~r~TL-nSi~~WY~QAr~~  121 (205)
T KOG1673|consen   62 VSI-----------RGTDISFSIWDLGGQREFINMLPIAC--------KDSVAILFMFDLTRRSTL-NSIKEWYRQARGL  121 (205)
T ss_pred             EEe-----------cceEEEEEEEecCCcHhhhccCceee--------cCcEEEEEEEecCchHHH-HHHHHHHHHHhcc
Confidence            100           03355678999999988622111111        223578888887654322 1222224444445


Q ss_pred             hhcCCCeEEEeeccccC---ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          228 YKTRLPLVLAFNKTDVA---QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ++..+| |+|++|-|+.   +++-.......-+..++                       .-+++.+++|+....||..+
T Consensus       122 NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk-----------------------~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen  122 NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAK-----------------------VMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHH-----------------------HhCCcEEEeeccccccHHHH
Confidence            555566 7899999964   22211112112121111                       12578999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 020549          305 FKAVEESAQEFMET  318 (324)
Q Consensus       305 ~~~i~~~~~~~~~~  318 (324)
                      |..+...+-.-+|.
T Consensus       178 FK~vlAklFnL~~t  191 (205)
T KOG1673|consen  178 FKIVLAKLFNLPWT  191 (205)
T ss_pred             HHHHHHHHhCCcee
Confidence            99988776554443

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.99  E-value=4e-09  Score=83.05  Aligned_cols=165  Identities=18%  Similarity=0.218  Sum_probs=91.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|--++|||+++..|+......+.              ++.+++  .+..              .+.+.+  
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~--------------e~~pTi--EDiY--------------~~svet--   54 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGT--------------ELHPTI--EDIY--------------VASVET--   54 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCC--------------ccccch--hhhe--------------eEeeec--
Confidence            35678999999999999999998876443321              111110  0000              000000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEE--cCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVV--DTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vv--D~~~~~~~~~~~~~~~~~~  224 (324)
                                    ..+..-.+.|.||+|....      ...+-+... ..+|..|+|.  +..++++....+...+.  
T Consensus        55 --------------~rgarE~l~lyDTaGlq~~------~~eLprhy~-q~aDafVLVYs~~d~eSf~rv~llKk~Id--  111 (198)
T KOG3883|consen   55 --------------DRGAREQLRLYDTAGLQGG------QQELPRHYF-QFADAFVLVYSPMDPESFQRVELLKKEID--  111 (198)
T ss_pred             --------------CCChhheEEEeecccccCc------hhhhhHhHh-ccCceEEEEecCCCHHHHHHHHHHHHHHh--
Confidence                          0011346789999997553      112222222 2245545544  44455554443333231  


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      .......+|+++++||+|+.++.+.. +......                 .         .+-+..++++|.....+-+
T Consensus       112 k~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa-----------------~---------rEkvkl~eVta~dR~sL~e  165 (198)
T KOG3883|consen  112 KHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWA-----------------K---------REKVKLWEVTAMDRPSLYE  165 (198)
T ss_pred             hccccccccEEEEechhhcccchhcCHHHHHHHH-----------------h---------hhheeEEEEEeccchhhhh
Confidence            11223568999999999997654321 1111000                 0         1346788999999998888


Q ss_pred             HHHHHHHHH
Q 020549          304 YFKAVEESA  312 (324)
Q Consensus       304 l~~~i~~~~  312 (324)
                      -|-.+...+
T Consensus       166 pf~~l~~rl  174 (198)
T KOG3883|consen  166 PFTYLASRL  174 (198)
T ss_pred             HHHHHHHhc
Confidence            888887765

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2.8e-09  Score=82.76  Aligned_cols=161  Identities=18%  Similarity=0.248  Sum_probs=96.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|..+|-.++||||++-.|.-......    +          | ++.+.+..                   ++    
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~----i----------p-TvGFnvet-------------------Vt----   57 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT----I----------P-TVGFNVET-------------------VT----   57 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCccc----c----------c-ccceeEEE-------------------EE----
Confidence            456799999999999999999876543321    0          0 00111000                   00    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI  226 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~~  226 (324)
                                     .++..+..||..|+....      ..-..++.  ....++||+|+..+ +..+...+++.. +..
T Consensus        58 ---------------ykN~kfNvwdvGGqd~iR------plWrhYy~--gtqglIFV~Dsa~~-dr~eeAr~ELh~ii~~  113 (180)
T KOG0071|consen   58 ---------------YKNVKFNVWDVGGQDKIR------PLWRHYYT--GTQGLIFVVDSADR-DRIEEARNELHRIIND  113 (180)
T ss_pred             ---------------eeeeEEeeeeccCchhhh------HHHHhhcc--CCceEEEEEeccch-hhHHHHHHHHHHHhCC
Confidence                           237789999999986641      11112222  23588999999877 444433333321 111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ..-.+.|+++..||-|+...-..+++...++ |.+ +                    ....--+.|+||.+|.|+.+=+.
T Consensus       114 ~em~~~~~LvlANkQDlp~A~~pqei~d~le-Le~-~--------------------r~~~W~vqp~~a~~gdgL~egls  171 (180)
T KOG0071|consen  114 REMRDAIILILANKQDLPDAMKPQEIQDKLE-LER-I--------------------RDRNWYVQPSCALSGDGLKEGLS  171 (180)
T ss_pred             HhhhcceEEEEecCcccccccCHHHHHHHhc-ccc-c--------------------cCCccEeeccccccchhHHHHHH
Confidence            1224678999999999987644433332221 111 0                    01123578999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|...+
T Consensus       172 wlsnn~  177 (180)
T KOG0071|consen  172 WLSNNL  177 (180)
T ss_pred             HHHhhc
Confidence            887754

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.99  E-value=1.4e-08  Score=83.48  Aligned_cols=111  Identities=19%  Similarity=0.304  Sum_probs=83.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---ccccc-ccc----------------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAA-NID----------------------  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---~~~~~-~~~----------------------  119 (324)
                      -.++..+-++|++|||||||++.|.+...++.+.+.+.+.|.....   +|+-. .++                      
T Consensus        25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL  104 (223)
T COG2884          25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL  104 (223)
T ss_pred             ecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence            3567789999999999999999999999999888888777654321   11111 110                      


Q ss_pred             -h----h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcc
Q 020549          120 -I----R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIE  178 (324)
Q Consensus       120 -~----~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~  178 (324)
                       +    +  -+.++.++++..||.......++  ++|.|.+|++.++++.-..+.+++-|.| |-.+
T Consensus       105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD  169 (223)
T COG2884         105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPS--QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD  169 (223)
T ss_pred             hccCCCHHHHHHHHHHHHHHhccchhhhcCcc--ccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence             0    0  11256788999999887766665  7999999999999999999999999998 4434

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.97  E-value=7.2e-09  Score=88.99  Aligned_cols=139  Identities=18%  Similarity=0.214  Sum_probs=96.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------------ccccc---ccc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------LPFAA---NID------  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------------~~~~~---~~~------  119 (324)
                      -..+..++++|++||||||+++.+-+...++.+.+.+.+.+....+                 +|.-+   ++.      
T Consensus        24 I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~  103 (309)
T COG1125          24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL  103 (309)
T ss_pred             ecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc
Confidence            3567789999999999999999998887788888887776543211                 01111   110      


Q ss_pred             ----hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHHHh
Q 020549          120 ----IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFA  194 (324)
Q Consensus       120 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~~~  194 (324)
                          -+-..++.++|..++|.+..-.-...+++|.|++|++..+++...++.+++.|.| |-.++-.|..+...+.+.- 
T Consensus       104 ~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq-  182 (309)
T COG1125         104 GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ-  182 (309)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHH-
Confidence                0112257899999999985333333457999999999999999999999999999 6667666666555444332 


Q ss_pred             ccCCcEEEEEE
Q 020549          195 STFPTVVTYVV  205 (324)
Q Consensus       195 ~~~~d~iv~vv  205 (324)
                      ....-.+|||-
T Consensus       183 ~~l~kTivfVT  193 (309)
T COG1125         183 KELGKTIVFVT  193 (309)
T ss_pred             HHhCCEEEEEe
Confidence            23334555654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.96  E-value=5e-09  Score=89.40  Aligned_cols=91  Identities=20%  Similarity=0.357  Sum_probs=55.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .-.+|+++|.|.+|||||+..++.....             ...+.+++-.-+.                  |...    
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~Se-------------aA~yeFTTLtcIp------------------Gvi~----  105 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSE-------------AASYEFTTLTCIP------------------GVIH----  105 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhh-------------hhceeeeEEEeec------------------ceEE----
Confidence            3467999999999999999999875433             2223333300000                  1111    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhc-cCCcEEEEEEcCCCCC
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFAS-TFPTVVTYVVDTPRSA  211 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~-~~~d~iv~vvD~~~~~  211 (324)
                                     ..+..++++|.||+.+....+. .+.   +.++. .-+|+++.|+|+..+-
T Consensus       106 ---------------y~ga~IQllDLPGIieGAsqgkGRGR---QviavArtaDlilMvLDatk~e  153 (364)
T KOG1486|consen  106 ---------------YNGANIQLLDLPGIIEGASQGKGRGR---QVIAVARTADLILMVLDATKSE  153 (364)
T ss_pred             ---------------ecCceEEEecCcccccccccCCCCCc---eEEEEeecccEEEEEecCCcch
Confidence                           2367899999999987532211 111   11111 2369999999997653

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=98.94  E-value=2e-09  Score=83.65  Aligned_cols=160  Identities=20%  Similarity=0.216  Sum_probs=92.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc-ccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL-TSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~  145 (324)
                      ++.+++.++|--|||||||++.|.+.....            +.   -+.                       |.. .++
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~h------------lt---pT~-----------------------GFn~k~v   56 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH------------LT---PTN-----------------------GFNTKKV   56 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhh------------cc---ccC-----------------------CcceEEE
Confidence            567899999999999999999998764331            10   000                       110 000


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh-hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH-HH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF-TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~-~~  223 (324)
                      ++               ...+.+.+||..|+.... +|+.-.         ...|.++||||+.+...-. ...+.+ +.
T Consensus        57 ~~---------------~g~f~LnvwDiGGqr~IRpyWsNYy---------envd~lIyVIDS~D~krfe-E~~~el~EL  111 (185)
T KOG0074|consen   57 EY---------------DGTFHLNVWDIGGQRGIRPYWSNYY---------ENVDGLIYVIDSTDEKRFE-EISEELVEL  111 (185)
T ss_pred             ee---------------cCcEEEEEEecCCccccchhhhhhh---------hccceEEEEEeCCchHhHH-HHHHHHHHH
Confidence            00               235789999999986531 122221         2248999999965432111 111111 11


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +..-+-..+|+.+..||-|++......+....+.-  .                  .+  ......|-.+||.+++|+.+
T Consensus       112 leeeKl~~vpvlIfankQdlltaa~~eeia~klnl--~------------------~l--rdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen  112 LEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNL--A------------------GL--RDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             hhhhhhhccceeehhhhhHHHhhcchHHHHHhcch--h------------------hh--hhceEEeeeCccccccCccC
Confidence            22233457899999999998865433322221110  0                  00  01234677899999999887


Q ss_pred             HHHHHHHH
Q 020549          304 YFKAVEES  311 (324)
Q Consensus       304 l~~~i~~~  311 (324)
                      =.+.++..
T Consensus       170 g~~wv~sn  177 (185)
T KOG0074|consen  170 GSDWVQSN  177 (185)
T ss_pred             cchhhhcC
Confidence            76666544

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.94  E-value=1.3e-08  Score=86.42  Aligned_cols=151  Identities=19%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      |.+|+++|++||||||.+-.|.......+..+.++..|...    .+.    .+  ....+.+.+++..     +.. ..
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----~ga----~e--QL~~~a~~l~vp~-----~~~-~~   64 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----IGA----VE--QLKTYAEILGVPF-----YVA-RT   64 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----THH----HH--HHHHHHHHHTEEE-----EES-ST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----ccH----HH--HHHHHHHHhcccc-----chh-hc
Confidence            45799999999999999999988766557777776555321    011    11  1122222222211     000 00


Q ss_pred             ChHHH----HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          149 TTKFD----EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       149 ~~~~~----~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      .....    +.+...  ...+.+++|+||||....  .......+.+.+.....+-+++|+++..+.......   .   
T Consensus        65 ~~~~~~~~~~~l~~~--~~~~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~---~---  134 (196)
T PF00448_consen   65 ESDPAEIAREALEKF--RKKGYDLVLIDTAGRSPR--DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA---L---  134 (196)
T ss_dssp             TSCHHHHHHHHHHHH--HHTTSSEEEEEE-SSSST--HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH---H---
T ss_pred             chhhHHHHHHHHHHH--hhcCCCEEEEecCCcchh--hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH---H---
Confidence            00111    112222  244689999999996543  222333444444444568899999997654333322   1   


Q ss_pred             HHHhhcCCCeEEEeeccccCCh
Q 020549          225 SILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ......+. -=++++|.|-...
T Consensus       135 ~~~~~~~~-~~lIlTKlDet~~  155 (196)
T PF00448_consen  135 AFYEAFGI-DGLILTKLDETAR  155 (196)
T ss_dssp             HHHHHSST-CEEEEESTTSSST
T ss_pred             HHhhcccC-ceEEEEeecCCCC
Confidence            22222333 3577999997653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=7.3e-09  Score=91.97  Aligned_cols=117  Identities=19%  Similarity=0.242  Sum_probs=74.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~D  242 (324)
                      ...+-=+|+||+.+|..         ..+.. +.-|.+|+||.+.++..+++.-     ++...++.+++. ++.+||.|
T Consensus       116 ~RhYaH~DCPGHADYIK---------NMItGaaqMDGaILVVaatDG~MPQTrE-----HlLLArQVGV~~ivvfiNKvD  181 (449)
T KOG0460|consen  116 KRHYAHTDCPGHADYIK---------NMITGAAQMDGAILVVAATDGPMPQTRE-----HLLLARQVGVKHIVVFINKVD  181 (449)
T ss_pred             ccccccCCCCchHHHHH---------HhhcCccccCceEEEEEcCCCCCcchHH-----HHHHHHHcCCceEEEEEeccc
Confidence            45666799999888622         11111 3348999999999999998732     334456677665 55799999


Q ss_pred             cCChHhHHHHHH-hHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeecccc---CC-------ChHHHHHHHHH
Q 020549          243 VAQHEFALEWMQ-DFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVS---GA-------GIEAYFKAVEE  310 (324)
Q Consensus       243 l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~---g~-------gv~~l~~~i~~  310 (324)
                      ++++.+..++.+ ++++|+...                   .|. ...|+|.-||+-   |.       .|..|++.+..
T Consensus       182 ~V~d~e~leLVEmE~RElLse~-------------------gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDs  242 (449)
T KOG0460|consen  182 LVDDPEMLELVEMEIRELLSEF-------------------GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDS  242 (449)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHc-------------------CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhc
Confidence            997766655554 444443322                   121 247899888764   32       25667777766


Q ss_pred             HHHH
Q 020549          311 SAQE  314 (324)
Q Consensus       311 ~~~~  314 (324)
                      ++|.
T Consensus       243 yip~  246 (449)
T KOG0460|consen  243 YIPT  246 (449)
T ss_pred             cCCC
Confidence            6654

>cd01900 YchF YchF subfamily

Probab=98.92  E-value=2.7e-09  Score=94.86  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             EEEEccCCCcHHHHHHHHHhccc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      |+|+|.||||||||+|+|++...
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~   23 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA   23 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC
Confidence            58999999999999999998755

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=3.5e-09  Score=100.29  Aligned_cols=134  Identities=19%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCc-cccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSLN  146 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~  146 (324)
                      +...|+++-+-.+||||+-.+++...........+.+.         ++..|      .-+..+..|+-.+.+ ..+.  
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---------~a~md------~m~~er~rgITiqSAAt~~~--  100 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---------GATMD------SMELERQRGITIQSAATYFT--  100 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccC---------ceeee------hHHHHHhcCceeeeceeeee--
Confidence            44568999999999999999887653322111111111         11000      111122233332222 2232  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      +.+..+.||||||+.+|..  ...+    .+  ..-|.+|+++|+..+++.++.     ...+.
T Consensus       101 ----------------w~~~~iNiIDTPGHvDFT~--EVeR----AL--rVlDGaVlvl~aV~GVqsQt~-----tV~rQ  151 (721)
T KOG0465|consen  101 ----------------WRDYRINIIDTPGHVDFTF--EVER----AL--RVLDGAVLVLDAVAGVESQTE-----TVWRQ  151 (721)
T ss_pred             ----------------eccceeEEecCCCceeEEE--Eehh----hh--hhccCeEEEEEcccceehhhH-----HHHHH
Confidence                            5578999999999999832  2221    11  123888999999999988863     23356


Q ss_pred             HhhcCCCeEEEeeccccCChH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~  247 (324)
                      +++.++|.|..+||+|.....
T Consensus       152 ~~ry~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  152 MKRYNVPRICFINKMDRMGAS  172 (721)
T ss_pred             HHhcCCCeEEEEehhhhcCCC
Confidence            777899999999999998754

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=4.7e-09  Score=83.89  Aligned_cols=171  Identities=18%  Similarity=0.187  Sum_probs=91.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      -++..++.++|--|||||||++.|-.+.....    +.+..|+.+.                                  
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~----------------------------------   58 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEE----------------------------------   58 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHcccccccc----CCCcCCChHH----------------------------------
Confidence            34667899999999999999999977644321    1111111110                                  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                        ++             ..+..+.-+|..|+...      ...-.+++  ..+|.+||+||+.+.-.-..- ...+..+-
T Consensus        59 --l~-------------Ig~m~ftt~DLGGH~qA------rr~wkdyf--~~v~~iv~lvda~d~er~~es-~~eld~ll  114 (193)
T KOG0077|consen   59 --LS-------------IGGMTFTTFDLGGHLQA------RRVWKDYF--PQVDAIVYLVDAYDQERFAES-KKELDALL  114 (193)
T ss_pred             --he-------------ecCceEEEEccccHHHH------HHHHHHHH--hhhceeEeeeehhhHHHhHHH-HHHHHHHH
Confidence              00             23678889999996442      11122222  125789999998543221111 11111111


Q ss_pred             HH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHH--HhHHHHhccCceeeeccccCCChH
Q 020549          226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLS--LALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       226 ~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      .. .-...|+++.+||+|........+..-.+ -+....           ...+  ..-........++.||...+.|..
T Consensus       115 ~~e~la~vp~lilgnKId~p~a~se~~l~~~l-~l~~~t-----------~~~~~v~~~~~~~rp~evfmcsi~~~~gy~  182 (193)
T KOG0077|consen  115 SDESLATVPFLILGNKIDIPYAASEDELRFHL-GLSNFT-----------TGKGKVNLTDSNVRPLEVFMCSIVRKMGYG  182 (193)
T ss_pred             hHHHHhcCcceeecccccCCCcccHHHHHHHH-HHHHHh-----------cccccccccCCCCCeEEEEEEEEEccCccc
Confidence            11 12579999999999998764222211111 111100           0000  000011123568889998888876


Q ss_pred             HHHHHHHH
Q 020549          303 AYFKAVEE  310 (324)
Q Consensus       303 ~l~~~i~~  310 (324)
                      +-|..+..
T Consensus       183 e~fkwl~q  190 (193)
T KOG0077|consen  183 EGFKWLSQ  190 (193)
T ss_pred             eeeeehhh
Confidence            66655543

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.89  E-value=1.3e-08  Score=82.48  Aligned_cols=37  Identities=32%  Similarity=0.616  Sum_probs=32.4

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      |+++|++|+||||++..+.......+.++.++..|+.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~   38 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPS   38 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence            7899999999999999999887777888888887764

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.88  E-value=2.5e-09  Score=95.95  Aligned_cols=131  Identities=13%  Similarity=0.162  Sum_probs=79.7

Q ss_pred             CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCCh
Q 020549          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      -+.|+|.+|++++......+      +.....|..+++|-+..+.-..+     .+++........|+++|++|+|+-..
T Consensus       220 viTFIDLAGHEkYLKTTvFG------MTGH~PDf~MLMiGaNaGIiGmT-----KEHLgLALaL~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  220 VITFIDLAGHEKYLKTTVFG------MTGHMPDFTMLMIGANAGIIGMT-----KEHLGLALALHVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eEEEEeccchhhhhheeeec------cccCCCCceEEEecccccceecc-----HHhhhhhhhhcCcEEEEEEeeccCcH
Confidence            45699999987763211111      11244689999999888765544     22335556678999999999999988


Q ss_pred             HhHHHHHHhHHHHHHHH--hcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHHHHH
Q 020549          247 EFALEWMQDFEVFQAAI--SSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       247 ~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...++.++-+..+++.-  .+-|-......+.+... ..|  -..+|||-+|..+|+|++-|...|-
T Consensus       289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A-~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAA-VNFPSERVCPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEee-ccCccccccceEEeccccCCChHHHHHHHh
Confidence            87666666555554421  11111111111100000 011  1247999999999999998766654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.88  E-value=8e-08  Score=90.86  Aligned_cols=152  Identities=18%  Similarity=0.163  Sum_probs=80.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+++|++|+||||++..|.......+..+.++..|+...          ........+.+..++......     
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~----------aa~eQL~~la~~~gvp~~~~~-----  157 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP----------AAYDQLKQLAEKIGVPFYGDP-----  157 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH----------HHHHHHHHHHHHcCCcEEecC-----
Confidence            45778999999999999999999877665566777766554211          111111222233332211100     


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                       ........+..+.......+++|+||||....  .......+........+|.+++|+|+..+....       ..+..
T Consensus       158 -~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~--d~~lm~El~~l~~~~~pdevlLVvda~~gq~av-------~~a~~  227 (437)
T PRK00771        158 -DNKDAVEIAKEGLEKFKKADVIIVDTAGRHAL--EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK-------NQAKA  227 (437)
T ss_pred             -CccCHHHHHHHHHHHhhcCCEEEEECCCcccc--hHHHHHHHHHHHHHhcccceeEEEeccccHHHH-------HHHHH
Confidence             00111111111111122459999999996543  222333333333334578999999997753111       11122


Q ss_pred             HhhcCCC-eEEEeeccccC
Q 020549          227 LYKTRLP-LVLAFNKTDVA  244 (324)
Q Consensus       227 ~~~~~~p-~ilv~NK~Dl~  244 (324)
                      +.. .++ .-+|+||+|-.
T Consensus       228 F~~-~l~i~gvIlTKlD~~  245 (437)
T PRK00771        228 FHE-AVGIGGIIITKLDGT  245 (437)
T ss_pred             HHh-cCCCCEEEEecccCC
Confidence            221 122 35678999854

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.88  E-value=1.6e-08  Score=82.67  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=80.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc------------------ccc---------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA------------------NID---------  119 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~---------  119 (324)
                      ..+.+|+|+|++|+|||||+|.+.+...+..+.+.+.+.|.+-..-...+                  +++         
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL  102 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL  102 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence            46778999999999999999999999999999999988876433211111                  110         


Q ss_pred             -hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 -IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ..++..+..+....|+.......+.  .+|.|.+|++..+++......+.++|.|=
T Consensus       103 ~a~~r~~v~~aa~~vGl~~~~~RLP~--~LSGGqRQRvALARclvR~~PilLLDEPF  157 (231)
T COG3840         103 NAEQREKVEAAAAQVGLAGFLKRLPG--ELSGGQRQRVALARCLVREQPILLLDEPF  157 (231)
T ss_pred             CHHHHHHHHHHHHHhChhhHhhhCcc--ccCchHHHHHHHHHHHhccCCeEEecCch
Confidence             1234456666777777765555543  69999999999999999999999999984

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.88  E-value=7.9e-09  Score=89.55  Aligned_cols=169  Identities=17%  Similarity=0.134  Sum_probs=100.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.+.+++.|.+|+|||+|||.+++......          +....++.+                      .++-+. 
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~----------t~k~K~g~T----------------------q~in~f-  179 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIAD----------TSKSKNGKT----------------------QAINHF-  179 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhh----------hcCCCCccc----------------------eeeeee-
Confidence            45667899999999999999999988643321          011011111                      011110 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                                       .-+..+.++|.||.....+    ..........++.. ..--.+++++|++-++++.+.    
T Consensus       180 -----------------~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~----  238 (320)
T KOG2486|consen  180 -----------------HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDN----  238 (320)
T ss_pred             -----------------eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCCh----
Confidence                             2256889999999544311    11223333333322 222456788899999888873    


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhH------HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeee
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFA------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGV  293 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~v  293 (324)
                       ..+..+.+.++|+.+|+||||....-..      ......+..+-+                     ..+ ...|.+.+
T Consensus       239 -~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~---------------------~~f~~~~Pw~~~  296 (320)
T KOG2486|consen  239 -PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR---------------------GVFLVDLPWIYV  296 (320)
T ss_pred             -HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc---------------------cceeccCCceee
Confidence             2346677889999999999998754220      001111111100                     111 22467789


Q ss_pred             ccccCCChHHHHHHHHH
Q 020549          294 SSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       294 SA~~g~gv~~l~~~i~~  310 (324)
                      |+.++.|++.|+-.+..
T Consensus       297 Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  297 SSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ecccccCceeeeeehhh
Confidence            99999999998766543

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=6.3e-09  Score=99.31  Aligned_cols=132  Identities=22%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC--C-cccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN--G-GILTSL  145 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~  145 (324)
                      ...|+++|+-.+|||+|+..|..+..+......       -....|+...-       .+  .+.|....  . ..+++ 
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~-------e~~lrytD~l~-------~E--~eRg~sIK~~p~Tl~l~-  190 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNT-------EADLRYTDTLF-------YE--QERGCSIKSTPVTLVLS-  190 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccc-------cccccccccch-------hh--HhcCceEeecceEEEEe-
Confidence            457999999999999999999988665421110       00111221100       00  00011000  0 01111 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                           .+         .++.+-+.|+||||+..|..      .+...+  ..+|.+|++||+.+++.-...     ..++
T Consensus       191 -----D~---------~~KS~l~nilDTPGHVnF~D------E~ta~l--~~sDgvVlvvDv~EGVmlntE-----r~ik  243 (971)
T KOG0468|consen  191 -----DS---------KGKSYLMNILDTPGHVNFSD------ETTASL--RLSDGVVLVVDVAEGVMLNTE-----RIIK  243 (971)
T ss_pred             -----cC---------cCceeeeeeecCCCcccchH------HHHHHh--hhcceEEEEEEcccCceeeHH-----HHHH
Confidence                 10         02345678999999888722      222222  336999999999999865542     2234


Q ss_pred             HHhhcCCCeEEEeeccccC
Q 020549          226 ILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ..-+.+.|+++|+||+|++
T Consensus       244 haiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  244 HAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             HHHhccCcEEEEEehhHHH
Confidence            4556789999999999975

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.87  E-value=4.9e-09  Score=89.83  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             HhhhhhhhhhhhccccCCCCCCCc-cccCCCc-EEEEEccCCCcHHHHHHHHHhccc
Q 020549           40 EITESMDKLHIEESSSGLAGSSSI-NFKRKPV-IIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      -++..+.+++.+....+..+.... ...+.+. +|+++|.|.+|||||+..|++...
T Consensus        28 llkaklaKlrreli~~g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s   84 (358)
T KOG1487|consen   28 LLKAKLAKLRRELITGGGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFS   84 (358)
T ss_pred             HHHHHHhhhhHhhccCCCCCCCCCccceeecceeeeEEecCccchhhhhhhhcCCCC
Confidence            344555566655544332222211 1122333 799999999999999999998743

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.86  E-value=5.6e-08  Score=80.40  Aligned_cols=131  Identities=14%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec---------------cCCccccccccccc-------chhc--
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN---------------LDPAVMTLPFAANI-------DIRD--  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~---------------~d~~~~~~~~~~~~-------~~~~--  122 (324)
                      ..+..|+++|++|+|||||+|-+.+-..+..+.+.+.+               ++..........++       .+.+  
T Consensus        29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~  108 (259)
T COG4525          29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ  108 (259)
T ss_pred             cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHH
Confidence            35677999999999999999999998766554444433               22222111111111       1111  


Q ss_pred             -HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHHHhccCCc
Q 020549          123 -TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFASTFPT  199 (324)
Q Consensus       123 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~~~~~~~d  199 (324)
                       +.+...++...||....-..  .=++|.||+|++.++++...++++.++|.| |-.+.+.+......+.+.++.+..-
T Consensus       109 R~~~a~q~l~~VgL~~~~~~~--i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~  185 (259)
T COG4525         109 RREIAHQMLALVGLEGAEHKY--IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ  185 (259)
T ss_pred             HHHHHHHHHHHhCcccccccc--eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe
Confidence             22445667788887754322  225999999999999999999999999999 6556556666666667777665443

>cd01859 MJ1464 MJ1464

Probab=98.86  E-value=1.9e-08  Score=82.32  Aligned_cols=85  Identities=20%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549          198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL  277 (324)
Q Consensus       198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  277 (324)
                      +|++++|+|++........  .+.   ..+...++|+++|+||+|+........+. .+.                    
T Consensus        13 aD~vl~V~D~~~~~~~~~~--~l~---~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~-~~~--------------------   66 (156)
T cd01859          13 SDVVLEVLDARDPELTRSR--KLE---RYVLELGKKLLIVLNKADLVPKEVLEKWK-SIK--------------------   66 (156)
T ss_pred             CCEEEEEeeCCCCcccCCH--HHH---HHHHhCCCcEEEEEEhHHhCCHHHHHHHH-HHH--------------------
Confidence            6999999999775543331  111   22334579999999999997643221111 110                    


Q ss_pred             HHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                           . ..+.+++++||++|.|+++|++.|.+.++.
T Consensus        67 -----~-~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          67 -----E-SEGIPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             -----H-hCCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence                 1 124679999999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.86  E-value=5.3e-08  Score=85.16  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=76.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------------------------cccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------------------TLPF  114 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------------------------~~~~  114 (324)
                      ...+..++|+|++|||||||+++|.+...+..+.+.+.+.+....                               .+|+
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~  104 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH  104 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc
Confidence            346788999999999999999999998877766666655432210                               1111


Q ss_pred             ccccc---hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          115 AANID---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       115 ~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                      ...+.   ..+...+.++++..++......  ..+.+|.|.+|++.++.+...+.+++|+|.|--
T Consensus       105 ~~~~~~~~~~D~~~v~~aL~~~~~~~la~r--~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs  167 (258)
T COG1120         105 LGLFGRPSKEDEEIVEEALELLGLEHLADR--PVDELSGGERQRVLIARALAQETPILLLDEPTS  167 (258)
T ss_pred             cccccCCCHhHHHHHHHHHHHhCcHHHhcC--cccccChhHHHHHHHHHHHhcCCCEEEeCCCcc
Confidence            11111   1233356667888877664332  244699999999999999999999999999974

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.85  E-value=2.4e-08  Score=81.62  Aligned_cols=85  Identities=19%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             cEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHH
Q 020549          199 TVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLS  278 (324)
Q Consensus       199 d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~  278 (324)
                      |++++|+|++........+..   . ..+...++|+|+|+||+|+.+.+....++..+.                     
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~---~-~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~---------------------   55 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIE---R-VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLR---------------------   55 (155)
T ss_pred             CEEEEEEeccCCccccCHHHH---H-HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHH---------------------
Confidence            689999999776544432211   0 233456799999999999987654433332221                     


Q ss_pred             HhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          279 LALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       279 ~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                          .. .+.+++++||++|.|+++|++.|.+...
T Consensus        56 ----~~-~~~~ii~vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          56 ----HS-YPTIPFKISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             ----hh-CCceEEEEeccCCcChhhHHHHHHHHhH
Confidence                11 2467899999999999999999977643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.84  E-value=4.3e-08  Score=86.60  Aligned_cols=109  Identities=15%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc-----------------------ccccccc---
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-----------------------PFAANID---  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~---  119 (324)
                      -+++.+++|+|++|||||||++.+-+-..+..+.+.+.+.+...-..                       +...++-   
T Consensus        29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PL  108 (339)
T COG1135          29 IPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL  108 (339)
T ss_pred             EcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhH
Confidence            45778899999999999999999999888888888887755432110                       0000000   


Q ss_pred             -----hhcH--HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          120 -----IRDT--IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       120 -----~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                           .+..  .++.++++.+||.+.....++  ++|.|++|++.++++...++++++.|.|-.
T Consensus       109 eiag~~k~ei~~RV~elLelVgL~dk~~~yP~--qLSGGQKQRVaIARALa~~P~iLL~DEaTS  170 (339)
T COG1135         109 ELAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDEATS  170 (339)
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCChhhhccCch--hcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence                 0111  267789999999987776665  799999999999999999999999999864

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.83  E-value=1.1e-07  Score=87.70  Aligned_cols=153  Identities=14%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++.+|+|+|++||||||++..|.......+..+.++..|+...          ...-....+.+..++..    ...  .
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ri----------aAvEQLk~yae~lgipv----~v~--~  303 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI----------GTVQQLQDYVKTIGFEV----IAV--R  303 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcch----------HHHHHHHHHhhhcCCcE----Eec--C
Confidence            4578999999999999999999987666666666655543210          00101111122222110    000  0


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      -...+...+..+.. ..+.+++|+||||....  ....-..+.+.+.....+.+++|+|+.....+...      .+..+
T Consensus       304 d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~------i~~~F  374 (436)
T PRK11889        304 DEAAMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE------IITNF  374 (436)
T ss_pred             CHHHHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH------HHHHh
Confidence            01112222222211 12579999999995432  12223344444444556788899998654433221      12333


Q ss_pred             hhcCCCeEEEeeccccCCh
Q 020549          228 YKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ...+ .-=++++|.|-...
T Consensus       375 ~~~~-idglI~TKLDET~k  392 (436)
T PRK11889        375 KDIH-IDGIVFTKFDETAS  392 (436)
T ss_pred             cCCC-CCEEEEEcccCCCC
Confidence            3322 33689999997653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.83  E-value=6.1e-08  Score=82.71  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=77.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------------------cccccccc---
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------------LPFAANID---  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------------------~~~~~~~~---  119 (324)
                      ..++...+|+|++|+|||||++.+.+...+..+.+.+.+.+..-.+                       .+...++.   
T Consensus        31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl  110 (263)
T COG1127          31 VPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL  110 (263)
T ss_pred             ecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheeh
Confidence            4678889999999999999999999999999888888777642211                       11111110   


Q ss_pred             -----hhc-HH--HHHHHHHHcCCCCCC-cccccccccChHHHHHHHHHHHHhCCCCEEEEeCC--CC
Q 020549          120 -----IRD-TI--RYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP--GQ  176 (324)
Q Consensus       120 -----~~~-~~--~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp--G~  176 (324)
                           ... .+  .+..-++..||.+.. -..++  ++|.||+.++..+++..-+++++|+|.|  |+
T Consensus       111 re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps--ELSGGM~KRvaLARAialdPell~~DEPtsGL  176 (263)
T COG1127         111 REHTKLPESLIRELVLMKLELVGLRGAAADLYPS--ELSGGMRKRVALARAIALDPELLFLDEPTSGL  176 (263)
T ss_pred             HhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch--hhcchHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence                 001 11  122335567777663 34444  6999999999999999999999999987  64

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.81  E-value=2.9e-07  Score=76.59  Aligned_cols=151  Identities=18%  Similarity=0.175  Sum_probs=76.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc--c
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL--F  148 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~  148 (324)
                      .++++|++|+||||++..+.......+..+.++..|+...          ........+.+..++.    +......  .
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~----------~~~~~l~~~~~~~~~~----~~~~~~~~~~   67 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP----------AAIEQLRVLGEQVGVP----VFEEGEGKDP   67 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh----------HHHHHHHHhcccCCeE----EEecCCCCCH
Confidence            5789999999999999999877655566676666554211          0000111111122211    1110000  0


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                      .....+.+..  ....+.+++|+||||....  .......+.........+.+++|+|+.........    ..  ....
T Consensus        68 ~~~~~~~~~~--~~~~~~d~viiDt~g~~~~--~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~----~~--~~~~  137 (173)
T cd03115          68 VSIAKRAIEH--AREENFDVVIVDTAGRLQI--DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQ----AK--AFNE  137 (173)
T ss_pred             HHHHHHHHHH--HHhCCCCEEEEECcccchh--hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHH----HH--HHHh
Confidence            0111111111  2245788999999996532  11112222222222347899999998533221111    11  1222


Q ss_pred             hcCCCeEEEeeccccCCh
Q 020549          229 KTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~  246 (324)
                      ..+ ..-+|+||+|....
T Consensus       138 ~~~-~~~viltk~D~~~~  154 (173)
T cd03115         138 ALG-ITGVILTKLDGDAR  154 (173)
T ss_pred             hCC-CCEEEEECCcCCCC
Confidence            233 35788899998754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.81  E-value=2.8e-07  Score=87.03  Aligned_cols=154  Identities=18%  Similarity=0.166  Sum_probs=79.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .++..|+++|++|+||||++..|+...... +..+.++..|+...          ........+.+..++.......   
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~----------aa~eQL~~~a~~~gv~v~~~~~---  164 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP----------AAIEQLKTLGEQIGVPVFPSGD---  164 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch----------HHHHHHHHHHhhcCCeEEecCC---
Confidence            346789999999999999999988766555 66777766654221          1111122223333322110000   


Q ss_pred             cccChHHH-HHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          146 NLFTTKFD-EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      ..-...+. +.+..+  ...+++++|+||||....  .......+........++-+++|+|+..+.   +.    ...+
T Consensus       165 ~~dp~~i~~~a~~~a--~~~~~DvVIIDTaGrl~~--d~~lm~eL~~i~~~v~p~evllVlda~~gq---~a----v~~a  233 (433)
T PRK10867        165 GQDPVDIAKAALEEA--KENGYDVVIVDTAGRLHI--DEELMDELKAIKAAVNPDEILLVVDAMTGQ---DA----VNTA  233 (433)
T ss_pred             CCCHHHHHHHHHHHH--HhcCCCEEEEeCCCCccc--CHHHHHHHHHHHHhhCCCeEEEEEecccHH---HH----HHHH
Confidence            00001111 111111  244689999999995432  122222333333333467789999985431   21    1111


Q ss_pred             HHHh-hcCCCeEEEeeccccCC
Q 020549          225 SILY-KTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       225 ~~~~-~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+. ..+ ..-+|+||+|-..
T Consensus       234 ~~F~~~~~-i~giIlTKlD~~~  254 (433)
T PRK10867        234 KAFNEALG-LTGVILTKLDGDA  254 (433)
T ss_pred             HHHHhhCC-CCEEEEeCccCcc
Confidence            2222 222 2357889999643

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.81  E-value=1.6e-08  Score=83.99  Aligned_cols=108  Identities=16%  Similarity=0.197  Sum_probs=78.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccc-------hhcH---------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID-------IRDT---------------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~---------------  123 (324)
                      ...+..++++|++||||||+++.|.+...+..+.+++.+.|...........+.       +.++               
T Consensus        25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~  104 (245)
T COG4555          25 AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG  104 (245)
T ss_pred             eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh
Confidence            456788999999999999999999999999999998877765433222222221       1111               


Q ss_pred             -------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             .+..++++.+++...  .-.....||.||+|++.++++.-.++.++++|.|-
T Consensus       105 l~~~~~kari~~l~k~l~l~~~--~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~  161 (245)
T COG4555         105 LSRKEIKARIAELSKRLQLLEY--LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT  161 (245)
T ss_pred             hhhhHHHHHHHHHHHHhChHHH--HHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence                   133455666665442  22233459999999999999999999999999884

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.80  E-value=8e-08  Score=81.66  Aligned_cols=151  Identities=21%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCc-ceEEEeccCCcccccccccccch--------hc-------------------
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRN-IRGYVMNLDPAVMTLPFAANIDI--------RD-------------------  122 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~--------~~-------------------  122 (324)
                      +|+|+|..|+||||+.-.|+...+..+ +.+.++.-|+ -.+.+..-.+..        +.                   
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk   80 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK   80 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence            799999999999999998777777766 8888888887 333332221110        00                   


Q ss_pred             -HHHHHHHHHHcC---------------CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeC-CCCcchhhhhhh
Q 020549          123 -TIRYKEVMKQFN---------------LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT-PGQIEIFTWSAS  185 (324)
Q Consensus       123 -~~~~~~~~~~~~---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt-pG~~~~~~~~~~  185 (324)
                       .....++++++.               -+..||.|+ +..   -.+..+..+.  ....+++++|| +|++.|.. +..
T Consensus        81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp-~~a---llR~~l~~l~--~~~~e~VivDtEAGiEHfgR-g~~  153 (255)
T COG3640          81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP-MNA---LLRRLLRHLI--LNRYEVVIVDTEAGIEHFGR-GTI  153 (255)
T ss_pred             cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch-HHH---HHHHHHHHHh--cccCcEEEEecccchhhhcc-ccc
Confidence             001122222111               112234443 222   2222232222  33479999998 68777621 111


Q ss_pred             HHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcC-CCeEEEeeccccC
Q 020549          186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTDVA  244 (324)
Q Consensus       186 ~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl~  244 (324)
                                ..+|+++.|+|.+...  .. ..  ....+.....+ +++.+|+||+|-.
T Consensus       154 ----------~~vD~vivVvDpS~~s--l~-ta--eri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         154 ----------EGVDLVIVVVDPSYKS--LR-TA--ERIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ----------cCCCEEEEEeCCcHHH--HH-HH--HHHHHHHHHhCCceEEEEEeeccch
Confidence                      1259999999985421  11 11  11112334467 8999999999965

>cd01858 NGP_1 NGP-1

Probab=98.79  E-value=3.1e-08  Score=81.18  Aligned_cols=86  Identities=16%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             CCcEEEEEEcCCCCCCchh-HHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          197 FPTVVTYVVDTPRSANPMT-FMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       197 ~~d~iv~vvD~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      .+|++++|+|++....... .+...+   .. ...++|+|+|+||+|+.+++....+...+.                  
T Consensus         8 ~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~------------------   65 (157)
T cd01858           8 SSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVTARWVKILS------------------   65 (157)
T ss_pred             hCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHh------------------
Confidence            4799999999987654332 222211   21 133589999999999987654333332222                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                             +.++. .++++||+++.|+++|++.|...+
T Consensus        66 -------~~~~~-~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          66 -------KEYPT-IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             -------cCCcE-EEEEeeccccccHHHHHHHHHHHH
Confidence                   11121 268899999999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=8.9e-08  Score=90.15  Aligned_cols=145  Identities=21%  Similarity=0.328  Sum_probs=91.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...+++|+++||||+|||||++.|.......           ++..+        +                  |.++- 
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~-----------ti~~i--------~------------------GPiTv-  107 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-----------TIDEI--------R------------------GPITV-  107 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHh-----------hhhcc--------C------------------CceEE-
Confidence            4567888999999999999999998763221           01111        1                  11100 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                        .+             ++...+.|+.+|.-..         .|...  +..+|+++++||+..++.-.+     +..+.
T Consensus       108 --vs-------------gK~RRiTflEcp~Dl~---------~miDv--aKIaDLVlLlIdgnfGfEMET-----mEFLn  156 (1077)
T COG5192         108 --VS-------------GKTRRITFLECPSDLH---------QMIDV--AKIADLVLLLIDGNFGFEMET-----MEFLN  156 (1077)
T ss_pred             --ee-------------cceeEEEEEeChHHHH---------HHHhH--HHhhheeEEEeccccCceehH-----HHHHH
Confidence              00             3466888999994211         11111  123599999999999887655     44557


Q ss_pred             HHhhcCCCeEE-EeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549          226 ILYKTRLPLVL-AFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (324)
Q Consensus       226 ~~~~~~~p~il-v~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g  298 (324)
                      .+...+.|-|+ |++-.|+.......      ++..++++             ..+|.+.+.++.+|.+|...+
T Consensus       157 il~~HGmPrvlgV~ThlDlfk~~stL------r~~KKrlk-------------hRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         157 ILISHGMPRVLGVVTHLDLFKNPSTL------RSIKKRLK-------------HRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             HHhhcCCCceEEEEeecccccChHHH------HHHHHHHh-------------hhHHHHHcCCceEEEeccccc
Confidence            77788999887 99999998754221      11111111             124556788899999998764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.79  E-value=8.2e-08  Score=87.20  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------c---ccccc---cc--chh----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------T---LPFAA---NI--DIR----  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~---~~~~~---~~--~~~----  121 (324)
                      -..+.+++++||+|||||||++.+.|-..+.++.+.+.+.+..--            +   ||.-+   ++  .++    
T Consensus        26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~  105 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV  105 (338)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC
Confidence            356778999999999999999999999988888877766654321            0   11100   11  011    


Q ss_pred             --c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          122 --D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       122 --~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                        .  ..++.++.+.+++.......+  ..+|.|++|++..+++.-..+++.++|.|=.
T Consensus       106 ~k~ei~~rV~eva~~L~l~~lL~r~P--~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS  162 (338)
T COG3839         106 PKAEIDKRVKEVAKLLGLEHLLNRKP--LQLSGGQRQRVALARALVRKPKVFLLDEPLS  162 (338)
T ss_pred             chHHHHHHHHHHHHHcCChhHHhcCc--ccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence              1  125667788888776444333  3699999999999999999999999999963

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.78  E-value=5.7e-08  Score=88.69  Aligned_cols=107  Identities=17%  Similarity=0.190  Sum_probs=81.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc-------------c--------hh---
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-------------D--------IR---  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~--------~~---  121 (324)
                      -.++.+++++||+|||||||++.|.|-..+.++.+.+.+.+.+-- -|+...+             .        ++   
T Consensus        28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~  106 (352)
T COG3842          28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK  106 (352)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhhcccceeecCcccCCCCcHHHHhhhhhhhcC
Confidence            356778999999999999999999999999888887766654321 1111111             1        11   


Q ss_pred             ----cH--HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ----DT--IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ----~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ..  .++.++++.+++.........  ++|.|++|++..+++....++++++|.|=
T Consensus       107 ~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--qLSGGQqQRVALARAL~~~P~vLLLDEPl  164 (352)
T COG3842         107 KLKKAEIKARVEEALELVGLEGFADRKPH--QLSGGQQQRVALARALVPEPKVLLLDEPL  164 (352)
T ss_pred             CCCHHHHHHHHHHHHHHcCchhhhhhChh--hhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence                11  267888999999886665543  79999999999999999999999999994

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.78  E-value=1.2e-07  Score=83.69  Aligned_cols=126  Identities=13%  Similarity=0.201  Sum_probs=87.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc---CCccc------------------------ccccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---DPAVM------------------------TLPFAANID  119 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~---d~~~~------------------------~~~~~~~~~  119 (324)
                      +.+..++++|++|||||||++.+.|-..+..+.+.+.+.   |..--                        ++.++-.+.
T Consensus        26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~  105 (345)
T COG1118          26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR  105 (345)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence            467789999999999999999999999988877777666   33210                        011111000


Q ss_pred             ------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC-CCcchhhhhhhHHHHHHH
Q 020549          120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEA  192 (324)
Q Consensus       120 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~~  192 (324)
                            .+-+.++.++++.+.|..-+...+.  ++|.|++|++..+++....++++++|.| |--+...+..+..++.+.
T Consensus       106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~  183 (345)
T COG1118         106 KERPSEAEIRARVEELLRLVQLEGLADRYPA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL  183 (345)
T ss_pred             ccCCChhhHHHHHHHHHHHhcccchhhcCch--hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence                  1223356777888888765555543  7999999999999999999999999999 433443344445555544


Q ss_pred             Hh
Q 020549          193 FA  194 (324)
Q Consensus       193 ~~  194 (324)
                      ..
T Consensus       184 ~~  185 (345)
T COG1118         184 HD  185 (345)
T ss_pred             HH
Confidence            43

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.77  E-value=5.1e-08  Score=77.78  Aligned_cols=108  Identities=20%  Similarity=0.264  Sum_probs=74.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc----cchh---cHHHHHHH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN----IDIR---DTIRYKEV  129 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~----~~~~---~~~~~~~~  129 (324)
                      .++..++|+|++|+|||||++.|++...+..+.+.+.+.+.....          .+....    ..+.   ....+.++
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~   88 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEV   88 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456789999999999999999999998776666666544332200          000000    0011   12245677


Q ss_pred             HHHcCCCCCC--cccccccccChHHHHHHHHHHHHhCCCCEEEEeCC
Q 020549          130 MKQFNLGPNG--GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (324)
Q Consensus       130 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp  174 (324)
                      ++.+++....  .+-.....+|.|+++++..+.+....++++|+|.|
T Consensus        89 l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP  135 (137)
T PF00005_consen   89 LKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP  135 (137)
T ss_dssp             HHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            7877766521  22223367999999999999999999999999988

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.76  E-value=5.4e-08  Score=81.62  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHH-HHHHHHHHcCCCCCCccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI-RYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~  144 (324)
                      -.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+...  ....   ..+..+ .+..+++.+++....  -..
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~--~~~~---~~~~~i~~~~q~l~~~gl~~~~--~~~   94 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS--LSPK---ELARKIAYVPQALELLGLAHLA--DRP   94 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc--CCHH---HHHHHHhHHHHHHHHcCCHhHh--cCC
Confidence            35678899999999999999999999987777777665443211  0000   011122 223367777775421  223


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+|.|+++++..+.+...+++++++|.|-
T Consensus        95 ~~~LS~G~~qrl~laral~~~p~llllDEP~  125 (180)
T cd03214          95 FNELSGGERQRVLLARALAQEPPILLLDEPT  125 (180)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            3469999999999999999999999999985

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=4.3e-08  Score=95.13  Aligned_cols=129  Identities=21%  Similarity=0.237  Sum_probs=77.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc-ccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .....++++-+...|||||...|+.....+..+            ..+.- ..|.|.-..            ..||....
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~r------------lagkirfld~redeq------------~rgitmks   62 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSR------------LAGKIRFLDTREDEQ------------TRGITMKS   62 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechh------------hccceeeccccchhh------------hhceeeec
Confidence            344569999999999999999998654332111            00000 001111000            01333221


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                      ..+|           ...++..+.|+|+||+.+|..  ....      +..++|.++++||+.+|...++..     .++
T Consensus        63 s~is-----------~~~~~~~~nlidspghvdf~s--evss------as~l~d~alvlvdvvegv~~qt~~-----vlr  118 (887)
T KOG0467|consen   63 SAIS-----------LLHKDYLINLIDSPGHVDFSS--EVSS------ASRLSDGALVLVDVVEGVCSQTYA-----VLR  118 (887)
T ss_pred             cccc-----------cccCceEEEEecCCCccchhh--hhhh------hhhhcCCcEEEEeeccccchhHHH-----HHH
Confidence            1111           114577889999999999832  1111      224579999999999999887732     224


Q ss_pred             HHhhcCCCeEEEeecccc
Q 020549          226 ILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl  243 (324)
                      .....+...++|+||+|.
T Consensus       119 q~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen  119 QAWIEGLKPILVINKIDR  136 (887)
T ss_pred             HHHHccCceEEEEehhhh
Confidence            444567788999999994

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.76  E-value=8.5e-08  Score=85.89  Aligned_cols=55  Identities=15%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             CcEEEEEEcCC-CCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHH
Q 020549          198 PTVVTYVVDTP-RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEV  258 (324)
Q Consensus       198 ~d~iv~vvD~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~  258 (324)
                      .++++|.+++. +++.+.+     +..++.+ ...+++|-|+.|+|....++.....+.+..
T Consensus       114 VH~cLYfI~pt~~~L~~~D-----i~~mk~L-s~~vNvIPvIaKaD~lt~~el~~~k~~i~~  169 (281)
T PF00735_consen  114 VHACLYFIPPTGHGLKPLD-----IEFMKRL-SKRVNVIPVIAKADTLTPEELQAFKQRIRE  169 (281)
T ss_dssp             EEEEEEEE-TTSSSS-HHH-----HHHHHHH-TTTSEEEEEESTGGGS-HHHHHHHHHHHHH
T ss_pred             cceEEEEEcCCCccchHHH-----HHHHHHh-cccccEEeEEecccccCHHHHHHHHHHHHH
Confidence            37999999975 4566555     2222222 335788999999999998877666555553

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.75  E-value=5e-08  Score=88.78  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=74.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------cccccc----cchhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAAN----IDIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~----~~~~~----------  122 (324)
                      ..++..++|+|++|||||||++.|++...+..+.+.+.+.++....         .+....    ..+++          
T Consensus        30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~  109 (306)
T PRK13537         30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG  109 (306)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence            3467789999999999999999999998887777777665532110         000000    00111          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            .....++++.+++...  .-.....+|.|+++++.++.+...+++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt  166 (306)
T PRK13537        110 LSAAAARALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT  166 (306)
T ss_pred             CCHHHHHHHHHHHHHHcCCchH--hcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence                  1123466777777542  22334469999999999999999999999999884

>TIGR00959 ffh signal recognition particle protein

Probab=98.74  E-value=5.5e-07  Score=85.04  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc-CCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .++..++++|++|+||||++..|+.... ..+..+.++..|+...          .....+..+.+..++........  
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~----------~a~~QL~~~a~~~gvp~~~~~~~--  164 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP----------AAIEQLKVLGQQVGVPVFALGKG--  164 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch----------HHHHHHHHHHHhcCCceEecCCC--
Confidence            3467899999999999999999987744 3456777766654211          11111122223333221110000  


Q ss_pred             cccChHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          146 NLFTTKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                       .-...+ ...+..+  ...+++++|+||||....  .......+.+......++-+++|+|+..+.....       .+
T Consensus       165 -~~P~~i~~~al~~~--~~~~~DvVIIDTaGr~~~--d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~-------~a  232 (428)
T TIGR00959       165 -QSPVEIARRALEYA--KENGFDVVIVDTAGRLQI--DEELMEELAAIKEILNPDEILLVVDAMTGQDAVN-------TA  232 (428)
T ss_pred             -CCHHHHHHHHHHHH--HhcCCCEEEEeCCCcccc--CHHHHHHHHHHHHhhCCceEEEEEeccchHHHHH-------HH
Confidence             000011 1112222  245689999999995442  1222333333333344688899999865421111       11


Q ss_pred             HHHh-hcCCCeEEEeeccccCC
Q 020549          225 SILY-KTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       225 ~~~~-~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+. ..++ .=+|+||+|-..
T Consensus       233 ~~f~~~v~i-~giIlTKlD~~~  253 (428)
T TIGR00959       233 KTFNERLGL-TGVVLTKLDGDA  253 (428)
T ss_pred             HHHHhhCCC-CEEEEeCccCcc
Confidence            2222 2232 367799999543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.74  E-value=6.6e-08  Score=89.14  Aligned_cols=108  Identities=13%  Similarity=0.193  Sum_probs=74.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccccc----chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAANI----DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~----~~~~----------  122 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+.....         .+....+    .+.+          
T Consensus        64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~  143 (340)
T PRK13536         64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG  143 (340)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence            3567889999999999999999999998887777777665432110         0000000    0111          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            .....++++.+++....  -.....+|.|+++++.++.+...+++++|+|.|-
T Consensus       144 ~~~~~~~~~~~~ll~~~~L~~~~--~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt  200 (340)
T PRK13536        144 MSTREIEAVIPSLLEFARLESKA--DARVSDLSGGMKRRLTLARALINDPQLLILDEPT  200 (340)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhh--CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence                  11234567777776422  2223469999999999999999999999999884

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.74  E-value=3.6e-07  Score=81.50  Aligned_cols=99  Identities=18%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccch-hcHH-----HHHHHHHHcCCCCCCcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDI-RDTI-----RYKEVMKQFNLGPNGGI  141 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~~~  141 (324)
                      ...+++|+|.||+|||||+|+|+.....             ..++|++| |++ ..++     +++-.++.++-  ++  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-------------~~NfPF~T-IdPn~a~V~v~d~Rfd~l~~~Y~~--~~--   80 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-------------AANFPFCT-IDPNEARVEVPDSRFDLLCPIYGP--KS--   80 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCC-------------ccCCCcce-eccccceeecCchHHHHHHHhcCC--cc--
Confidence            3468999999999999999999987543             45566664 221 1111     11111111110  00  


Q ss_pred             cccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh-hhhhHHHHHHHHhccCCcEEEEEEcC
Q 020549          142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDT  207 (324)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vvD~  207 (324)
                                           .....+.++|.+|...-.. ...++..++..++.  +|.++.||++
T Consensus        81 ---------------------~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~--vDaifhVVr~  124 (391)
T KOG1491|consen   81 ---------------------KVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRH--VDAIFHVVRA  124 (391)
T ss_pred             ---------------------eeeeeEEEEeecccccCcccCcCchHHHHHhhhh--ccceeEEEEe
Confidence                                 1134678999999876432 22356666665543  5788888876

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.73  E-value=4.5e-08  Score=81.69  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+.                                +++....
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i--------------------------------~~~~q~~   70 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP--------------------------------VYKPQYI   70 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE--------------------------------EEEcccC
Confidence            56788999999999999999999998877766665533211                                1111111


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .+|.|+++++..+.+...+++++++|.|-
T Consensus        71 ~LSgGq~qrv~laral~~~p~lllLDEPt   99 (177)
T cd03222          71 DLSGGELQRVAIAAALLRNATFYLFDEPS   99 (177)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            28999999999999999999999999984

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.73  E-value=3.2e-07  Score=84.33  Aligned_cols=153  Identities=15%  Similarity=0.187  Sum_probs=77.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..++++|++|+||||++..|.......+..+.++..|+...    +      .........+..++..    ...  
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~----g------AveQLk~yae~lgvpv----~~~--  267 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS----G------AVEQFQGYADKLDVEL----IVA--  267 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc----c------HHHHHHHHhhcCCCCE----Eec--
Confidence            45678999999999999999999877655566777766554321    0      0001111112222111    000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                      .-...+...+..+.. ..+.+++|+||||....  .......+.........+.+++|+++..  ...+ .   ...+..
T Consensus       268 ~dp~dL~~al~~l~~-~~~~D~VLIDTAGr~~~--d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d-~---~~i~~~  338 (407)
T PRK12726        268 TSPAELEEAVQYMTY-VNCVDHILIDTVGRNYL--AEESVSEISAYTDVVHPDLTCFTFSSGM--KSAD-V---MTILPK  338 (407)
T ss_pred             CCHHHHHHHHHHHHh-cCCCCEEEEECCCCCcc--CHHHHHHHHHHhhccCCceEEEECCCcc--cHHH-H---HHHHHh
Confidence            001111111211110 13679999999996442  1222223333333334577778887632  2222 1   111122


Q ss_pred             HhhcCCCeEEEeeccccCC
Q 020549          227 LYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~  245 (324)
                      +...+ +--+|+||.|-..
T Consensus       339 f~~l~-i~glI~TKLDET~  356 (407)
T PRK12726        339 LAEIP-IDGFIITKMDETT  356 (407)
T ss_pred             cCcCC-CCEEEEEcccCCC
Confidence            22222 3377899999754

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.73  E-value=6.6e-08  Score=87.92  Aligned_cols=108  Identities=19%  Similarity=0.274  Sum_probs=74.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------cccccccc----cchhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAAN----IDIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~----~~~~~----------  122 (324)
                      ..++..++|+|++|||||||++.|++...+..+.+.+.+.+...         ...+....    ..+++          
T Consensus        16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~   95 (302)
T TIGR01188        16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG   95 (302)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence            35677899999999999999999999987777777665543211         00010000    00111          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            ...+.++++.+++....  -.....+|.|++|++..+.+...+++++|+|.|-
T Consensus        96 ~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  152 (302)
T TIGR01188        96 LPKDEAEERAEELLELFELGEAA--DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT  152 (302)
T ss_pred             CCHHHHHHHHHHHHHHcCChhHh--CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                  11345678888876422  2233469999999999999999999999999884

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.72  E-value=1.3e-07  Score=91.77  Aligned_cols=27  Identities=22%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ...+|+|+|.+|+||||++|+|++...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekv  143 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVK  143 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcccc
Confidence            346799999999999999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.69  E-value=2.5e-07  Score=88.37  Aligned_cols=150  Identities=18%  Similarity=0.190  Sum_probs=74.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCC--cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (324)
                      ...+.+|+|+|++|+||||++..|.......  +..+.++..|....    +          ..+.+..++  ...++..
T Consensus       347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi----g----------A~EQLk~ya--~iLgv~v  410 (559)
T PRK12727        347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV----G----------GREQLHSYG--RQLGIAV  410 (559)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc----c----------HHHHHHHhh--cccCcee
Confidence            3457789999999999999999998764332  23455554443110    0          011111111  1112111


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                      ....-...+..   .+. ...+.+++|+||||....  .......+. .+........++|+++..+.....   ..+  
T Consensus       411 ~~a~d~~~L~~---aL~-~l~~~DLVLIDTaG~s~~--D~~l~eeL~-~L~aa~~~a~lLVLpAtss~~Dl~---eii--  478 (559)
T PRK12727        411 HEADSAESLLD---LLE-RLRDYKLVLIDTAGMGQR--DRALAAQLN-WLRAARQVTSLLVLPANAHFSDLD---EVV--  478 (559)
T ss_pred             EecCcHHHHHH---HHH-HhccCCEEEecCCCcchh--hHHHHHHHH-HHHHhhcCCcEEEEECCCChhHHH---HHH--
Confidence            10000111222   222 224689999999996543  111121221 222222234567777765433322   222  


Q ss_pred             HHHHhhcCCCeEEEeeccccCC
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                       ..+.. ..+.-+|+||+|...
T Consensus       479 -~~f~~-~~~~gvILTKlDEt~  498 (559)
T PRK12727        479 -RRFAH-AKPQGVVLTKLDETG  498 (559)
T ss_pred             -HHHHh-hCCeEEEEecCcCcc
Confidence             22222 246789999999754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.69  E-value=1.5e-07  Score=80.60  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------cccccccc-----ccchhc-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAA-----NIDIRD-----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~~~~~~~-----~~~~~~-----------  122 (324)
                      -..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+..       +...+...     ...+.+           
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~  102 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA  102 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCc
Confidence            3567789999999999999999999987776666655443321       00000000     000111           


Q ss_pred             -HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ...+.++++.+++....  ......+|.|++|++..+.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  154 (205)
T cd03226         103 GNEQAETVLKDLDLYALK--ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT  154 (205)
T ss_pred             cHHHHHHHHHHcCCchhc--CCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence             12345677888876432  2233469999999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.68  E-value=5.3e-07  Score=73.17  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccc------------------------cccc--
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA------------------------ANID--  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~------------------------~~~~--  119 (324)
                      .+.+..|+|+|++|+|||||+.-|.+-..+..+.+.+.+.+..--+....                        .++-  
T Consensus        33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lP  112 (228)
T COG4181          33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP  112 (228)
T ss_pred             ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccch
Confidence            45678899999999999999999999988877777766654321111000                        0110  


Q ss_pred             -------h-hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 -------I-RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 -------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             . ..+-...++++.+||+.....++.  ++|.+.+|++.++++....+++.|-|.|-
T Consensus       113 leL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~--qLSGGEQQRVAiARAfa~~P~vLfADEPT  174 (228)
T COG4181         113 LELRGESSADSRAGAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPT  174 (228)
T ss_pred             hhhcCCccccHHHHHHHHHHHhCcccccccCcc--ccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence                   0 112245678888999877665554  79999999999999999999999999994

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.68  E-value=4.5e-07  Score=83.87  Aligned_cols=152  Identities=14%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCC-c-ceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-N-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (324)
                      ..++..++++|++|+||||++..|....... + ..+.++..|...    .      .....+..+.+.+++....  ..
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R----~------ga~EqL~~~a~~~gv~~~~--~~  201 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR----I------GGHEQLRIFGKILGVPVHA--VK  201 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc----c------cHHHHHHHHHHHcCCceEe--cC
Confidence            3456789999999999999999999874322 2 345554433211    0      0111111222222321100  00


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                      .    ...+.    .......+.+++||||||....  .......+........++-.++|+++..+.......   +  
T Consensus       202 ~----~~~l~----~~l~~l~~~DlVLIDTaG~~~~--d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i--  266 (374)
T PRK14722        202 D----GGDLQ----LALAELRNKHMVLIDTIGMSQR--DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---V--  266 (374)
T ss_pred             C----cccHH----HHHHHhcCCCEEEEcCCCCCcc--cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---H--
Confidence            0    00111    1112234789999999996542  112222222221222345678999998766554422   1  


Q ss_pred             HHHHhhc-CC-------CeEEEeeccccCC
Q 020549          224 CSILYKT-RL-------PLVLAFNKTDVAQ  245 (324)
Q Consensus       224 ~~~~~~~-~~-------p~ilv~NK~Dl~~  245 (324)
                       ..+... +.       +.=+|++|.|-..
T Consensus       267 -~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        267 -QAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             -HHHHHhhcccccccCCCCEEEEeccccCC
Confidence             111111 11       2357889999764

>cd01858 NGP_1 NGP-1

Probab=98.67  E-value=2.5e-08  Score=81.77  Aligned_cols=28  Identities=18%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      ....|+++|.||||||||+|+|.+....
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~  128 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVC  128 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCce
Confidence            3567899999999999999999986543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.66  E-value=1.8e-07  Score=80.75  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------cccccccc----cchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAAN----IDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~----~~~~~------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...             ...+....    ..+.+      
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~  105 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPL  105 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHH
Confidence            35678899999999999999999999877766666655433210             00000000    00011      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++....  ......+|.|++|++..+.+...+++++|+|.|-
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  166 (216)
T TIGR00960       106 RIIGVPPRDANERVSAALEKVGLEGKA--HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT  166 (216)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                      11345667778775422  2233469999999999999999999999999985

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.66  E-value=2e-07  Score=79.58  Aligned_cols=108  Identities=16%  Similarity=0.120  Sum_probs=73.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccc----ccchh----------c
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAA----NIDIR----------D  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~----~~~~~----------~  122 (324)
                      -.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.....         .+...    ...++          .
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  102 (201)
T cd03231          23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHS  102 (201)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccccc
Confidence            3567889999999999999999999988777666665544321100         00000    00111          1


Q ss_pred             HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++.+++....  -.....+|.|+++++..+.+....++++|+|.|-
T Consensus       103 ~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  153 (201)
T cd03231         103 DEQVEEALARVGLNGFE--DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT  153 (201)
T ss_pred             HHHHHHHHHHcCChhhh--cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            22345667778775422  2233469999999999999999999999999885

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.65  E-value=1.8e-07  Score=80.61  Aligned_cols=108  Identities=14%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccccc----cchhc-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAAN----IDIRD-----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~----~~~~~-----------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...        ...+....    ..+++           
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~  102 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV  102 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC
Confidence            35677899999999999999999999877666666554433210        00000000    00111           


Q ss_pred             -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt  158 (213)
T cd03259         103 PKAEIRARVRELLELVGLEGLLN--RYPHELSGGQQQRVALARALAREPSLLLLDEPL  158 (213)
T ss_pred             CHHHHHHHHHHHHHHcCChhhhh--cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                 112346677777754221  223469999999999999999999999999885

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.65  E-value=3e-07  Score=76.23  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=74.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-------------------------------cccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------------------LPFA  115 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-------------------------------~~~~  115 (324)
                      .++...+++||+|||||||+..+++......+.+++.+.+.+...                               +||.
T Consensus        25 ~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS  104 (252)
T COG4604          25 PKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS  104 (252)
T ss_pred             cCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc
Confidence            456778999999999999999999888888888888776654321                               1111


Q ss_pred             c-ccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          116 A-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       116 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      . .....++..++++++-++|.+-...  -++++|.|++|+...+.....+.+++++|.|=
T Consensus       105 qGRlt~eD~~~I~~aieyl~L~~l~dr--yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPL  163 (252)
T COG4604         105 QGRLTKEDRRIINEAIEYLHLEDLSDR--YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL  163 (252)
T ss_pred             CCCCchHHHHHHHHHHHHhcccchHHH--hHHhcccchhhhhhhheeeeccCcEEEecCcc
Confidence            0 0012334455666766666553322  23358999999999888888899999999985

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.65  E-value=1.7e-07  Score=81.22  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=72.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------ccccccc----ccchhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAA----NIDIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~----~~~~~~----------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...         ...+...    ...+++          
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  102 (220)
T cd03265          23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG  102 (220)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC
Confidence            34678899999999999999999999876666655554432210         0000000    000000          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            ...+.++++.+++...  .-.....+|.|+++++..+.+...+++++++|.|-
T Consensus       103 ~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt  159 (220)
T cd03265         103 VPGAERRERIDELLDFVGLLEA--ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT  159 (220)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                  1134566778887542  12233469999999999999999999999999985

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.65  E-value=1.5e-07  Score=85.46  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=74.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------cccccccc----chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAANI----DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~----~~~~----------  122 (324)
                      ...+..++|+|++|+|||||++.|++...+..+.+.+.+.+....         ..+....+    .+.+          
T Consensus        25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~  104 (301)
T TIGR03522        25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG  104 (301)
T ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence            356778999999999999999999999887777776655443210         00000000    0111          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            .....++++.+++.....  .....+|.|+++++..+.+...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt  161 (301)
T TIGR03522       105 MKGQLLKQRVEEMIELVGLRPEQH--KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT  161 (301)
T ss_pred             CCHHHHHHHHHHHHHHCCCchHhc--CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                  123456677888765322  223469999999999999999999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.65  E-value=6.8e-07  Score=76.71  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=76.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccc--cccc-------------------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF--AANI-------------------------  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~-------------------------  118 (324)
                      .+.+..++|+|++|||||||++.+++..++....+.+++.-.+......  ...+                         
T Consensus        54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~  133 (257)
T COG1119          54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF  133 (257)
T ss_pred             ecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecc
Confidence            4567889999999999999999999999887777777666443322200  0000                         


Q ss_pred             ----c-------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          119 ----D-------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       119 ----~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                          .       -...-....+++.+++..-..  .....+|.|.++++-++++.-..+.+.|+|.|-+
T Consensus       134 ~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~--r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~  200 (257)
T COG1119         134 FASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD--RPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ  200 (257)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcchhhhcc--CchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence                0       011223456677777664322  2233599999999999999999999999999853

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.65  E-value=1.3e-07  Score=80.97  Aligned_cols=108  Identities=18%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------------cccccccchh--------cH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------------LPFAANIDIR--------DT  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~--------~~  123 (324)
                      ..++..++|+|++|+|||||.+.|++...+..+.+.+.+....-..              -|+. .+.++        ..
T Consensus        30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~-SLnP~~tv~~~l~Ep  108 (252)
T COG1124          30 IERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-SLNPRRTVGRILSEP  108 (252)
T ss_pred             ecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCcc-ccCcchhHHHHHhhh
Confidence            4578889999999999999999999998887777777664221110              0111 11111        11


Q ss_pred             ----------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 ----------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                .+..++++.+|+.+.--. ...++||.|++|++.++++....++++|.|.|-
T Consensus       109 l~~~~~~~~~~~i~~~L~~VgL~~~~l~-R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt  169 (252)
T COG1124         109 LRPHGLSKSQQRIAELLDQVGLPPSFLD-RRPHELSGGQRQRIAIARALIPEPKLLILDEPT  169 (252)
T ss_pred             hccCCccHHHHHHHHHHHHcCCCHHHHh-cCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence                      125788888988764222 223469999999999999999999999999986

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.65  E-value=9.9e-07  Score=74.58  Aligned_cols=108  Identities=13%  Similarity=0.146  Sum_probs=70.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------cccccccc---c--chhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAAN---I--DIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------~~~~~~~~---~--~~~~------  122 (324)
                      -..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+...            ...+..+.   +  .+.+      
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~   94 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGP   94 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHH
Confidence            34677899999999999999999999877766666554433210            00000000   0  0010      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++....  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  155 (190)
T TIGR01166        95 LNLGLSEAEVERRVREALTAVGASGLR--ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT  155 (190)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCchhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                      01234556667765321  2233468999999999999999999999999885

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.65  E-value=8.4e-08  Score=81.68  Aligned_cols=107  Identities=10%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccc----cccccc-----------------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLP----FAANID-----------------------  119 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~-----------------------  119 (324)
                      ..+..|+|+|++|||||||+++|.+...+..+.+.+.+.++.--.-.    ...++.                       
T Consensus        28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl  107 (258)
T COG3638          28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL  107 (258)
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhc
Confidence            56778999999999999999999997666655555544332211000    000000                       


Q ss_pred             --------------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 --------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 --------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                    ..++...-+.++.+|+....-.  .-+.+|.|++|++.++++....+++++-|.|=
T Consensus       108 ~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q--ra~~LSGGQQQRVaIARaL~Q~pkiILADEPv  175 (258)
T COG3638         108 GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPV  175 (258)
T ss_pred             ccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH--HhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence                          1112222345555555543322  23369999999999999999999999999985

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.65  E-value=1.3e-07  Score=77.96  Aligned_cols=88  Identities=17%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      -.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+...  .+      ......           ..-+++.  
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~--~~------~~~~~~-----------~~i~~~~--   81 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF--AS------PRDARR-----------AGIAMVY--   81 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc--CC------HHHHHh-----------cCeEEEE--
Confidence            45678899999999999999999999988777776664433211  00      000000           0112333  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ++|.|+++++..+.+...+++++|+|.|-
T Consensus        82 -qLS~G~~qrl~laral~~~p~illlDEP~  110 (163)
T cd03216          82 -QLSVGERQMVEIARALARNARLLILDEPT  110 (163)
T ss_pred             -ecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence             29999999999999999999999999995

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.64  E-value=2.9e-07  Score=76.76  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..++.+++|+|++|+|||||++.+...    .+.+.+.+..+.....+    +-....   .++++.+++... ......
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~----~~~~~q---~~~l~~~~L~~~-~~~~~~   85 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNK----LIFIDQ---LQFLIDVGLGYL-TLGQKL   85 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCccccccccc----EEEEhH---HHHHHHcCCCcc-ccCCCc
Confidence            456788999999999999999998642    23333322211110000    000011   467788887642 112233


Q ss_pred             cccChHHHHHHHHHHHHhCC--CCEEEEeCCC
Q 020549          146 NLFTTKFDEVISLIERRADH--LDYVLVDTPG  175 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG  175 (324)
                      ..+|.++++++..+.+...+  ++++|+|.|-
T Consensus        86 ~~LSgGq~qrl~laral~~~~~p~llLlDEPt  117 (176)
T cd03238          86 STLSGGELQRVKLASELFSEPPGTLFILDEPS  117 (176)
T ss_pred             CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence            46999999999999999999  9999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.64  E-value=1.7e-07  Score=81.16  Aligned_cols=107  Identities=17%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------ccccccc----ccchhc-----------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAA----NIDIRD-----------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~----~~~~~~-----------  122 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...         ...+...    ...+.+           
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~  105 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL  105 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC
Confidence            4677899999999999999999999877766666554433210         0000000    000111           


Q ss_pred             -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ...+.++++.+++....  -.....+|.|+++++.++.+...+++++|+|.|-
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~  161 (220)
T cd03263         106 PKSEIKEEVELLLRVLGLTDKA--NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT  161 (220)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHH--hChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence                 11244667777775321  2233469999999999999999999999999884

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.63  E-value=1.8e-07  Score=85.03  Aligned_cols=108  Identities=14%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------ccccccc----cchhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAAN----IDIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~----~~~~~~---------  123 (324)
                      ...+.+++|+|++|+|||||++.|++...+..+.+.+.+.+....         ..+....    ..+.+.         
T Consensus        27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  106 (303)
T TIGR01288        27 IARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG  106 (303)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence            356788999999999999999999998777666666654432100         0000000    001111         


Q ss_pred             -------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ..+..+++.+++...  .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~ll~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  163 (303)
T TIGR01288       107 MSTREIEAVIPSLLEFARLESK--ADVRVALLSGGMKRRLTLARALINDPQLLILDEPT  163 (303)
T ss_pred             CCHHHHHHHHHHHHHHCCChhH--hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                   123345667776542  22233469999999999999999999999999984

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.63  E-value=1.1e-06  Score=74.89  Aligned_cols=108  Identities=15%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------c---cccc----cccchhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------T---LPFA----ANIDIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------~---~~~~----~~~~~~~~---------  123 (324)
                      -.++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+....      .   .+..    +...+.+.         
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~  103 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSP  103 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence            356788999999999999999999999877777766655432110      0   0000    00111111         


Q ss_pred             --HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 --IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        ..+.++++.+++...  .-.....+|.|+++++..+.+...+++++++|.|-
T Consensus       104 ~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~  155 (200)
T PRK13540        104 GAVGITELCRLFSLEHL--IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL  155 (200)
T ss_pred             chHHHHHHHHHcCCchh--hhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              134566777776532  12333469999999999999999999999999885

>cd01856 YlqF YlqF

Probab=98.63  E-value=3.5e-07  Score=76.07  Aligned_cols=84  Identities=25%  Similarity=0.372  Sum_probs=56.9

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      ..+|++++|+|++.........  .+   ..+  .++|+++|+||+|+.+......+.+.+.                  
T Consensus        18 ~~aD~il~v~D~~~~~~~~~~~--i~---~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~------------------   72 (171)
T cd01856          18 KLVDLVIEVRDARIPLSSRNPL--LE---KIL--GNKPRIIVLNKADLADPKKTKKWLKYFE------------------   72 (171)
T ss_pred             hhCCEEEEEeeccCccCcCChh--hH---hHh--cCCCEEEEEehhhcCChHHHHHHHHHHH------------------
Confidence            4579999999998765443311  11   122  3589999999999975542222221111                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                             .  ...+++++||+++.|+++|.+.|...++
T Consensus        73 -------~--~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          73 -------S--KGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             -------h--cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence                   0  1356899999999999999999998765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.63  E-value=1.9e-07  Score=79.91  Aligned_cols=108  Identities=13%  Similarity=0.086  Sum_probs=73.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccc----ccch------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAA----NIDI------------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~----~~~~------------  120 (324)
                      -.++.+++|+|++|+|||||++.|++...+..+.+.+.+.+.....         .+...    ...+            
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~  103 (204)
T PRK13538         24 LNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG  103 (204)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC
Confidence            3567789999999999999999999998777766665443321000         00000    0011            


Q ss_pred             -hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       .....+.++++.+++....  -.....+|.|+++++..+.+...+++++++|.|-
T Consensus       104 ~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  157 (204)
T PRK13538        104 PGDDEALWEALAQVGLAGFE--DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF  157 (204)
T ss_pred             ccHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence             1112345677788775321  2234569999999999999999999999999884

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=1.4e-08  Score=92.32  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +++.++.++||||+.+|.  -... .-.+.+     |.+|.|+|++.+++.++.     ..++.....++|.+..+||+|
T Consensus        99 wkg~rinlidtpghvdf~--leve-rclrvl-----dgavav~dasagve~qtl-----tvwrqadk~~ip~~~finkmd  165 (753)
T KOG0464|consen   99 WKGHRINLIDTPGHVDFR--LEVE-RCLRVL-----DGAVAVFDASAGVEAQTL-----TVWRQADKFKIPAHCFINKMD  165 (753)
T ss_pred             cccceEeeecCCCcceEE--EEHH-HHHHHh-----cCeEEEEeccCCccccee-----eeehhccccCCchhhhhhhhh
Confidence            668899999999999983  2221 112222     788999999999988762     122445567899999999999


Q ss_pred             cCCh
Q 020549          243 VAQH  246 (324)
Q Consensus       243 l~~~  246 (324)
                      ....
T Consensus       166 k~~a  169 (753)
T KOG0464|consen  166 KLAA  169 (753)
T ss_pred             hhhh
Confidence            8754

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.63  E-value=2.9e-07  Score=79.75  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=71.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-----cccccccc----ccchhc---------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA----NIDIRD---------------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~~~----~~~~~~---------------  122 (324)
                      .++..++|+|++|+|||||++.|++...+..+.+.+.+.+..     +...+...    ...+.+               
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  107 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE  107 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHH
Confidence            467789999999999999999999987766666555443211     00000000    000111               


Q ss_pred             -HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ...+.++++.+++....  ......+|.|++|++.++.+...+++++|+|.|-
T Consensus       108 ~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  159 (220)
T cd03293         108 ARERAEELLELVGLSGFE--NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF  159 (220)
T ss_pred             HHHHHHHHHHHcCChhhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence             11344667777775321  2233469999999999999999999999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.63  E-value=7.4e-07  Score=78.56  Aligned_cols=107  Identities=16%  Similarity=0.117  Sum_probs=69.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-cccc-ccccchhcH------------HHHHHHHHH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-TLPF-AANIDIRDT------------IRYKEVMKQ  132 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-~~~~-~~~~~~~~~------------~~~~~~~~~  132 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+...... ..+. .....+.+.            ....++++.
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~  102 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP  102 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence            46778999999999999999999998776655554433211110 0000 000001111            113456677


Q ss_pred             cCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      +++...  .-.....+|.|++|++.++.+....++++|+|.|-
T Consensus       103 l~l~~~--~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt  143 (246)
T cd03237         103 LQIEQI--LDREVPELSGGELQRVAIAACLSKDADIYLLDEPS  143 (246)
T ss_pred             cCCHHH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            766432  12233469999999999999999999999999985

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.62  E-value=8.8e-07  Score=77.52  Aligned_cols=108  Identities=17%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+....             ..+....    ..+.+      
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  102 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPL  102 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHH
Confidence            356778999999999999999999998777666665544332100             0000000    00010      


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++....  ......+|.|++|++.++.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt  164 (235)
T cd03261         103 REHTRLSEEEIREIVLEKLEAVGLRGAE--DLYPAELSGGMKKRVALARALALDPELLLYDEPT  164 (235)
T ss_pred             hhccCCCHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence                       11234567777775422  2233469999999999999999999999999985

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.62  E-value=3.1e-07  Score=82.39  Aligned_cols=87  Identities=25%  Similarity=0.387  Sum_probs=60.3

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      ..+|++++|+|++..........  .   ..+  .++|+|+|+||+|+.+......+.+.+.                  
T Consensus        20 ~~aDvVl~V~Dar~p~~~~~~~i--~---~~l--~~kp~IiVlNK~DL~~~~~~~~~~~~~~------------------   74 (276)
T TIGR03596        20 KLVDVVIEVLDARIPLSSRNPMI--D---EIR--GNKPRLIVLNKADLADPAVTKQWLKYFE------------------   74 (276)
T ss_pred             hhCCEEEEEEeCCCCCCCCChhH--H---HHH--CCCCEEEEEEccccCCHHHHHHHHHHHH------------------
Confidence            34799999999987655433211  1   122  3689999999999976543333322221                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                             .  .+.+++++||+++.|++.|.+.|.+.+++..
T Consensus        75 -------~--~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        75 -------E--KGIKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             -------H--cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence                   1  1357899999999999999999998887643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.62  E-value=8.5e-07  Score=76.65  Aligned_cols=108  Identities=18%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccc----ccchhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAA----NIDIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~----~~~~~~-----  122 (324)
                      ...+..++|+|++|+|||||++.|++...+..+.+.+.+.+...              ...+...    ...+.+     
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  106 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP  106 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence            34677899999999999999999999877766666554432210              0000000    000010     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++....  -.....+|.|++|++..+.+...+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~  168 (218)
T cd03255         107 LLLAGVPKKERRERAEELLERVGLGDRL--NHYPSELSGGQQQRVAIARALANDPKIILADEPT  168 (218)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHcCCchhh--hcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence                       11345667778775422  2223469999999999999999999999999985

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.61  E-value=4.1e-07  Score=77.29  Aligned_cols=107  Identities=13%  Similarity=0.151  Sum_probs=71.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------cccccccc----cchhcHH-----------H
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------MTLPFAAN----IDIRDTI-----------R  125 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------~~~~~~~~----~~~~~~~-----------~  125 (324)
                      ..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+...      ...+....    ..+.+.+           .
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~  103 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAET  103 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHH
Confidence            4677899999999999999999999987777777765543210      00010000    0111111           2


Q ss_pred             HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+++.+++....  ......+|.|+++++..+.+...+++++|+|.|-
T Consensus       104 ~~~~l~~~~l~~~~--~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~  151 (195)
T PRK13541        104 LYAAIHYFKLHDLL--DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE  151 (195)
T ss_pred             HHHHHHHcCCHhhh--ccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            34456666664311  1223459999999999999999999999999885

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.61  E-value=4.2e-07  Score=79.02  Aligned_cols=110  Identities=16%  Similarity=0.086  Sum_probs=81.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccc--------------------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANID--------------------------  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------------  119 (324)
                      -.++.+++++|++||||||+++.|+|...+.++.+.+.+.+|......|...+.                          
T Consensus        47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy  126 (325)
T COG4586          47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY  126 (325)
T ss_pred             cCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH
Confidence            346788999999999999999999999999999999999998763332222220                          


Q ss_pred             -h---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCc
Q 020549          120 -I---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI  177 (324)
Q Consensus       120 -~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~  177 (324)
                       +   ....+.+.+.+.+++.+  -.-.+++.+|-|.+.+.+.+.+....++++|+|.|-+.
T Consensus       127 ~Ipd~~F~~r~~~l~eiLdl~~--~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg  186 (325)
T COG4586         127 EIPDDEFAERLDFLTEILDLEG--FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG  186 (325)
T ss_pred             hCCHHHHHHHHHHHHHHhcchh--hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence             1   11113344445555542  23345567999999999999999999999999999643

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.61  E-value=1.8e-07  Score=80.84  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=71.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------cccccc----ccchhc-----------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAA----NIDIRD-----------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~----~~~~~~-----------  122 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+....         ..+...    ...+.+           
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  108 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL  108 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC
Confidence            46778999999999999999999998777666666544332100         000000    000111           


Q ss_pred             -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ...+.++++.+++...  .......+|.|+++++..+.+...+++++++|.|-
T Consensus       109 ~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt  164 (218)
T cd03266         109 KGDELTARLEELADRLGMEEL--LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT  164 (218)
T ss_pred             CHHHHHHHHHHHHHHcCCHHH--HhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                 1133556777777532  12234469999999999999999999999999885

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.61  E-value=1e-06  Score=78.23  Aligned_cols=108  Identities=13%  Similarity=0.076  Sum_probs=71.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC--------------cc-cccccccccch--h--cHHHH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP--------------AV-MTLPFAANIDI--R--DTIRY  126 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~--------------~~-~~~~~~~~~~~--~--~~~~~  126 (324)
                      ..++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.              .. ...+...++..  .  ....+
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~  114 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA  114 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHH
Confidence            356788999999999999999999998776655554422210              00 00000001110  0  11234


Q ss_pred             HHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .++++.+++....  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       115 ~~~l~~~gl~~~~--~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt  161 (257)
T PRK11247        115 LQALAAVGLADRA--NEWPAALSGGQKQRVALARALIHRPGLLLLDEPL  161 (257)
T ss_pred             HHHHHHcCChhHh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            5678888876422  2223469999999999999999999999999985

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.61  E-value=9e-07  Score=82.18  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------ccccc-------ccchhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------LPFAA-------NIDIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------~~~~~-------~~~~~~-----  122 (324)
                      ..++..++|+|++|+|||||++.|.+...+..+.+.+.+.+..-..           +.+..       ...+++     
T Consensus        16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~   95 (363)
T TIGR01186        16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLG   95 (363)
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHH
Confidence            3567889999999999999999999998888777777665432100           00000       000111     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++.....  .....+|.|++|++.++++...+++++|+|.|=
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~vgL~~~~~--~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~  157 (363)
T TIGR01186        96 PELLGWPEQERKEKALELLKLVGLEEYEH--RYPDELSGGMQQRVGLARALAAEPDILLMDEAF  157 (363)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                       123457788888854322  233469999999999999999999999999984

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=1.2e-06  Score=76.64  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=72.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~-----  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...              ...+....    ..+++     
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  111 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMP  111 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHH
Confidence            34677899999999999999999999877766666665433211              00000000    01111     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++.....  .....+|.|++|++..+.+...+++++|+|.|-
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  173 (233)
T PRK11629        112 LLIGKKKPAEINSRALEMLAAVGLEHRAN--HRPSELSGGERQRVAIARALVNNPRLVLADEPT  173 (233)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                       113456677888754221  223469999999999999999999999999885

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.61  E-value=1.1e-06  Score=76.12  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=72.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~-----  122 (324)
                      ..++..++|+|++|+|||||++.|++...+..+.+.+.+.+...              ...+....    ..+++     
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  107 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMP  107 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence            35677899999999999999999999877766666554433210              00000000    00111     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++....  -.....+|.|++|++..+.+....++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~illlDEPt  169 (221)
T TIGR02211       108 LLIGKKSVKEAKERAYEMLEKVGLEHRI--NHRPSELSGGERQRVAIARALVNQPSLVLADEPT  169 (221)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence                       11244667777775422  2233469999999999999999999999999884

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.60  E-value=3.9e-07  Score=78.50  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------  122 (324)
                      ...+..++|+|++|+|||||++.|.+...+..+.+.+.+.+....             ..+....    ..+.+      
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  104 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL  104 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHH
Confidence            356778999999999999999999998776666666554432110             0000000    00111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++...  .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt  165 (214)
T TIGR02673       105 EVRGKKEREIQRRVGAALRQVGLEHK--ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT  165 (214)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhh--hhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence                      1123456777777532  12233469999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.60  E-value=3.3e-07  Score=80.26  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc---------cccccccccc----chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI----DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~~----~~~~----------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+..         +...+....+    .+.+          
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~  103 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG  103 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence            3467889999999999999999999987776666655443321         0000000000    0010          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            ...+.++++.+++....  -.....+|.|++|++..+.+...+++++|+|.|-
T Consensus       104 ~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  160 (236)
T TIGR03864       104 LSRAEARERIAALLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPT  160 (236)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                  11234567777775422  2233469999999999999999999999999984

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.60  E-value=8e-07  Score=81.97  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccc---cccc----chhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---AANI----DIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~---~~~~----~~~~------  122 (324)
                      ..++..++|+|++|||||||++.|.+...+..+.+.+.+.+....          .+.+   ....    .+.+      
T Consensus        28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~  107 (343)
T TIGR02314        28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL  107 (343)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence            346778999999999999999999999888777776655543210          0000   0000    0000      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ..++.++++.+++.....  .....+|.|++|++.++++...++++++.|.|-
T Consensus       108 ~~~~~~~~~~~~~v~e~l~~vgL~~~~~--~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt  168 (343)
T TIGR02314       108 ELDNTPKDEIKRKVTELLALVGLGDKHD--SYPSNLSGGQKQRVAIARALASNPKVLLCDEAT  168 (343)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence                      113457788888865332  223469999999999999999999999999885

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.60  E-value=1.4e-06  Score=77.41  Aligned_cols=153  Identities=14%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++.+++++|++|+||||++..|.......+..+.++..|+.-    .      ..........+..++..    ...  .
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r----i------~~~~ql~~~~~~~~~~~----~~~--~  137 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR----I------GTVQQLQDYVKTIGFEV----IAV--R  137 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC----H------HHHHHHHHHhhhcCceE----Eec--C
Confidence            557899999999999999999988765444555554443211    0      00001111111222110    000  0


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      -...+...+..+. ...+.+++|+||||....  .......+.+.+.....+.+++|+++.....+...+      +..+
T Consensus       138 ~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~------~~~f  208 (270)
T PRK06731        138 DEAAMTRALTYFK-EEARVDYILIDTAGKNYR--ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI------ITNF  208 (270)
T ss_pred             CHHHHHHHHHHHH-hcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH------HHHh
Confidence            0011222222221 123689999999996542  222333444444445567889999986544333222      2333


Q ss_pred             hhcCCCeEEEeeccccCCh
Q 020549          228 YKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ... -+-=++++|.|-...
T Consensus       209 ~~~-~~~~~I~TKlDet~~  226 (270)
T PRK06731        209 KDI-HIDGIVFTKFDETAS  226 (270)
T ss_pred             CCC-CCCEEEEEeecCCCC
Confidence            332 334789999997653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=1.2e-06  Score=79.09  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=74.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------ccccccc---c--chhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAAN---I--DIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~~~~~~~---~--~~~~------  122 (324)
                      -..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+....            ..+..+.   +  .+.+      
T Consensus        30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~  109 (287)
T PRK13637         30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP  109 (287)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence            356788999999999999999999998877766666655432110            0000000   0  0111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++....-.......+|.|++|++.++.+....++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt  172 (287)
T PRK13637        110 INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT  172 (287)
T ss_pred             HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence                      11345678888886211122233469999999999999999999999999985

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=1.3e-06  Score=77.55  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=72.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----cccccc----------cccch-------h--
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----MTLPFA----------ANIDI-------R--  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----~~~~~~----------~~~~~-------~--  121 (324)
                      -.++.+++|+|++|+|||||++.|++...+..+.+.+.+.+...     ...+..          .++..       .  
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM  103 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence            35678899999999999999999999877766666554432210     000000          00000       0  


Q ss_pred             -cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ....+.++++.+++....  ......+|.|+++++..+.+....++++|+|.|-
T Consensus       104 ~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  156 (255)
T PRK11248        104 QRLEIAHQMLKKVGLEGAE--KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF  156 (255)
T ss_pred             HHHHHHHHHHHHcCChhHh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence             011345677788775321  2234469999999999999999999999999985

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.60  E-value=2.5e-07  Score=74.66  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...+..++|+|++|+|||||++.|.+...+..+.+.+.+.    ..                           -+++.  
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~---------------------------i~~~~--   69 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VK---------------------------IGYFE--   69 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EE---------------------------EEEEc--
Confidence            3567789999999999999999999987766555544221    00                           02222  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ++|.++++++..+.+...+++++++|.|-
T Consensus        70 -~lS~G~~~rv~laral~~~p~illlDEP~   98 (144)
T cd03221          70 -QLSGGEKMRLALAKLLLENPNLLLLDEPT   98 (144)
T ss_pred             -cCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence             28999999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.59  E-value=9.5e-07  Score=74.16  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------------ccccccc--c--c----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------TLPFAAN--I--D----  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------------~~~~~~~--~--~----  119 (324)
                      .+.+...+|+||+|+|||||++.|+|...+..+.+.+.+.+....                  .+||+..  +  .    
T Consensus        24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~  103 (259)
T COG4559          24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPH  103 (259)
T ss_pred             ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccc
Confidence            456788999999999999999999999988888888777654321                  1111110  0  0    


Q ss_pred             ------hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhC------CCCEEEEeCCCCcchhhhhhhHH
Q 020549          120 ------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPGQIEIFTWSASGA  187 (324)
Q Consensus       120 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~liDtpG~~~~~~~~~~~~  187 (324)
                            .++......+|...++..-.+..  ...+|.|.+|++..++....      ..++.|+|.|--.--..+...--
T Consensus       104 ~~g~~~~e~~~i~~~ala~~d~~~la~R~--y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl  181 (259)
T COG4559         104 RSGREPEEDERIAAQALAATDLSGLAGRD--YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL  181 (259)
T ss_pred             ccCCCchhhHHHHHHHHHHcChhhhhccc--hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH
Confidence                  01111233445555444333322  22489999999988877632      33688999886332111222233


Q ss_pred             HHHHHHhccCCcEEEEEEcC
Q 020549          188 IITEAFASTFPTVVTYVVDT  207 (324)
Q Consensus       188 ~~~~~~~~~~~d~iv~vvD~  207 (324)
                      .+.+.+....+-+++.+-|-
T Consensus       182 ~laR~la~~g~~V~~VLHDL  201 (259)
T COG4559         182 RLARQLAREGGAVLAVLHDL  201 (259)
T ss_pred             HHHHHHHhcCCcEEEEEccc
Confidence            44555554444454444453

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.59  E-value=2.7e-07  Score=79.40  Aligned_cols=105  Identities=21%  Similarity=0.275  Sum_probs=69.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------ccccccc----cchhc------------
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFAAN----IDIRD------------  122 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~----~~~~~------------  122 (324)
                      ++ .++|+|++|+|||||++.|++...+..+.+.+.+.+....         ..+....    ..+.+            
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  103 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP  103 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence            46 8999999999999999999998777666666555432110         0000000    01111            


Q ss_pred             ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ...+.++++.+++...  .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  158 (211)
T cd03264         104 SKEVKARVDEVLELVNLGDR--AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT  158 (211)
T ss_pred             HHHHHHHHHHHHHHCCCHHH--HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                1123456777777532  12334569999999999999999999999999884

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.59  E-value=5.5e-08  Score=80.84  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .....++++|.||+|||||+|+|++...
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~  142 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRA  142 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCccc
Confidence            3457899999999999999999998654

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=9.3e-07  Score=82.08  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=74.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR-----  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~-----  121 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+..-.               -+|.   ..++.  .+     
T Consensus        28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~  107 (356)
T PRK11650         28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP  107 (356)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC
Confidence            46778999999999999999999999887777666655432100               0000   00110  01     


Q ss_pred             --c-HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 --D-TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 --~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        . ...+.++++.+++.....  .....+|.|++|++.++++....++++|+|.|=
T Consensus       108 ~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~  162 (356)
T PRK11650        108 KAEIEERVAEAARILELEPLLD--RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL  162 (356)
T ss_pred             HHHHHHHHHHHHHHcCChhHhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence              0 123567788888865332  223469999999999999999999999999984

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.59  E-value=1.1e-06  Score=82.63  Aligned_cols=108  Identities=18%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc------------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN------------------  117 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~------------------  117 (324)
                      .+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.....          .+....                  
T Consensus        26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~  105 (402)
T PRK09536         26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPH  105 (402)
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchh
Confidence            3577889999999999999999999987776666665554321100          000000                  


Q ss_pred             ---cc---hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          118 ---ID---IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       118 ---~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         +.   ..+...+.++++.+++....  -.....+|.|++|++.++++...+++++|+|.|-
T Consensus       106 ~~~~~~~~~~~~~~v~~~le~vgl~~~~--~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt  167 (402)
T PRK09536        106 RSRFDTWTETDRAAVERAMERTGVAQFA--DRPVTSLSGGERQRVLLARALAQATPVLLLDEPT  167 (402)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence               00   01223456778888876422  2234569999999999999999999999999985

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.58  E-value=3.6e-07  Score=77.81  Aligned_cols=108  Identities=13%  Similarity=0.069  Sum_probs=71.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------cccccccc----cchhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAAN----IDIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~----~~~~~----------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+...         ...+....    ..+.+          
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  102 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG  102 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence            34678899999999999999999999877766665554432110         00000000    00111          


Q ss_pred             --HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        ...+.++++.+++....  -.....+|.|+++++..+.+...+++++++|.|-
T Consensus       103 ~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  155 (198)
T TIGR01189       103 GAQRTIEDALAAVGLTGFE--DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT  155 (198)
T ss_pred             CcHHHHHHHHHHcCCHHHh--cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              11245567777775421  2233569999999999999999999999999885

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.58  E-value=3.1e-07  Score=84.74  Aligned_cols=86  Identities=19%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      +.+|.+++|+|..+.......+...+   ......++|+|+|+||+|+++......+.+.+.                  
T Consensus        88 aNvD~vLlV~d~~~p~~~~~~LdR~L---~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~------------------  146 (352)
T PRK12289         88 ANADQILLVFALAEPPLDPWQLSRFL---VKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQ------------------  146 (352)
T ss_pred             hcCCEEEEEEECCCCCCCHHHHHHHH---HHHHHCCCCEEEEEEchhcCChHHHHHHHHHHH------------------
Confidence            44699999999865322221222222   233456899999999999987654333322221                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                             .  .+.+++++||++|.|+++|++.|...
T Consensus       147 -------~--~g~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        147 -------Q--WGYQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             -------h--cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence                   1  24579999999999999999988653

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=1.1e-06  Score=81.17  Aligned_cols=108  Identities=17%  Similarity=0.162  Sum_probs=74.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cc---ccccc----cchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---PFAAN----IDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~---~~~~~----~~~~~------  122 (324)
                      ..++..++|+|++|+|||||++.|.+...+..+.+.+.+.+....          .+   +....    ..+.+      
T Consensus        28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~  107 (343)
T PRK11153         28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL  107 (343)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence            356788999999999999999999999877777766655432210          00   00000    00111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++....  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~gL~~~~--~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt  168 (343)
T PRK11153        108 ELAGTPKAEIKARVTELLELVGLSDKA--DRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT  168 (343)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhh--hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                      11345667788775432  2233469999999999999999999999999885

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.58  E-value=4.2e-07  Score=78.13  Aligned_cols=108  Identities=19%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc-----ccchhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA-----NIDIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~-----~~~~~~--------  122 (324)
                      ...+..++|+|++|+|||||++.|++...+..+.+.+.+.+...          ...+...     ...+.+        
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~  103 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN  103 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHH
Confidence            34677899999999999999999999877666665554432210          0000000     000111        


Q ss_pred             --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              .....++++.+++...  .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  162 (211)
T cd03225         104 LGLPEEEIEERVEEALELVGLEGL--RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT  162 (211)
T ss_pred             cCCCHHHHHHHHHHHHHHcCcHhh--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                    1123456777777532  12233469999999999999999999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.58  E-value=7.4e-07  Score=79.04  Aligned_cols=125  Identities=18%  Similarity=0.223  Sum_probs=85.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc---------------------cccc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL---------------------PFAA--------  116 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~---------------------~~~~--------  116 (324)
                      ...+.+++|+|-+|+|||||++++-+...++.+.+.+-+.|....+.                     |..+        
T Consensus        51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG  130 (386)
T COG4175          51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG  130 (386)
T ss_pred             ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence            45778899999999999999999988888888888887776542211                     1111        


Q ss_pred             -cc-ch---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHH
Q 020549          117 -NI-DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIIT  190 (324)
Q Consensus       117 -~~-~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~  190 (324)
                       .+ .+   ....+..++++..||.......+  +++|.||+|++..+++...+++++|.|.|=. .++..+......+.
T Consensus       131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl  208 (386)
T COG4175         131 LEVQGVPKAEREERALEALELVGLEGYADKYP--NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL  208 (386)
T ss_pred             eeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence             00 00   11124557777888776544433  4799999999999999999999999999842 24434444444444


Q ss_pred             HH
Q 020549          191 EA  192 (324)
Q Consensus       191 ~~  192 (324)
                      +.
T Consensus       209 ~L  210 (386)
T COG4175         209 EL  210 (386)
T ss_pred             HH
Confidence            43

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.58  E-value=4.1e-07  Score=78.17  Aligned_cols=107  Identities=16%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc------cccccccc----ccchhc--------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA------VMTLPFAA----NIDIRD--------------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~------~~~~~~~~----~~~~~~--------------  122 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+..      +...+...    ...+.+              
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE  103 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence            467789999999999999999999987766666655443321      00000000    000111              


Q ss_pred             --HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        ...+.++++.+++...  .-.....+|.|+++++..+.+...+++++++|.|-
T Consensus       104 ~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~  156 (210)
T cd03269         104 EARRRIDEWLERLELSEY--ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF  156 (210)
T ss_pred             HHHHHHHHHHHHcCChHH--HhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              1123456777776532  22233469999999999999999999999999885

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.57  E-value=1.8e-06  Score=77.48  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=88.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..++..|.++|-+|+||||.+-.|+......++.+.+..-|...      .    .....+..+-+..|...    +...
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR------A----aAiEQL~~w~er~gv~v----I~~~  201 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR------A----AAIEQLEVWGERLGVPV----ISGK  201 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH------H----HHHHHHHHHHHHhCCeE----EccC
Confidence            45688999999999999999999999988888888775544321      0    11112233333333221    1100


Q ss_pred             -ccc-ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCC------cEEEEEEcCCCCCCchhHH
Q 020549          146 -NLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFP------TVVTYVVDTPRSANPMTFM  217 (324)
Q Consensus       146 -~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~------d~iv~vvD~~~~~~~~~~~  217 (324)
                       ..= ..-....++.+.  ..+++++|+||+|-.+-  ...+...+.+..+-...      +-+++++|+..|.+...+.
T Consensus       202 ~G~DpAaVafDAi~~Ak--ar~~DvvliDTAGRLhn--k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA  277 (340)
T COG0552         202 EGADPAAVAFDAIQAAK--ARGIDVVLIDTAGRLHN--KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA  277 (340)
T ss_pred             CCCCcHHHHHHHHHHHH--HcCCCEEEEeCcccccC--chhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence             000 111222233333  55899999999994332  33455555554443333      3377777998887655433


Q ss_pred             HhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          218 SNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       218 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      .       .+...----=++++|+|-..
T Consensus       278 k-------~F~eav~l~GiIlTKlDgtA  298 (340)
T COG0552         278 K-------IFNEAVGLDGIILTKLDGTA  298 (340)
T ss_pred             H-------HHHHhcCCceEEEEecccCC
Confidence            2       22221111267899999443

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.57  E-value=6.2e-07  Score=77.87  Aligned_cols=107  Identities=16%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-----ccccccccc------cch---------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAAN------IDI---------------  120 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~~~~------~~~---------------  120 (324)
                      .++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+..     +...+....      ..+               
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~   83 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL   83 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence            357789999999999999999999987666665555443210     000000000      000               


Q ss_pred             -----hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           .....+.++++.+++.....  .....+|.|+++++..+.+...+++++|+|.|=
T Consensus        84 ~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~llilDEP~  141 (223)
T TIGR03771        84 RRPCVADFAAVRDALRRVGLTELAD--RPVGELSGGQRQRVLVARALATRPSVLLLDEPF  141 (223)
T ss_pred             cCCcHHHHHHHHHHHHHhCCchhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                 01123456778888764322  233469999999999999999999999999984

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.57  E-value=3.6e-07  Score=78.21  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-cc----------cc---ccccc----cchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-VM----------TL---PFAAN----IDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-~~----------~~---~~~~~----~~~~~------  122 (324)
                      .++..++|+|++|+|||||++.|.+...+..+.+.+.+.+.. ..          ..   +....    ..+++      
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~  101 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL  101 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHH
Confidence            467789999999999999999999987776666665544311 00          00   00000    00111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++....  -.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lS~G~~qr~~laral~~~p~llllDEPt  162 (206)
T TIGR03608       102 KYKKLSKKEKREKKKEALEKVGLNLKL--KQKIYELSGGEQQRVALARAILKDPPLILADEPT  162 (206)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCchhhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                      11344567777774321  2233469999999999999999999999999885

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.57  E-value=6.1e-07  Score=77.98  Aligned_cols=108  Identities=16%  Similarity=0.148  Sum_probs=72.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--cccccccchhc----------------HHHHH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--LPFAANIDIRD----------------TIRYK  127 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~----------------~~~~~  127 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+.....  ..+.....+.+                .....
T Consensus        45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~  124 (224)
T cd03220          45 VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKID  124 (224)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3567889999999999999999999987777776666543321000  00000000000                11234


Q ss_pred             HHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ++++.+++....  -.....+|.|+++++..+.+....++++|+|.|-
T Consensus       125 ~~l~~~~l~~~~--~~~~~~LSgG~~qrv~laral~~~p~llllDEP~  170 (224)
T cd03220         125 EIIEFSELGDFI--DLPVKTYSSGMKARLAFAIATALEPDILLIDEVL  170 (224)
T ss_pred             HHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            556666765422  2334569999999999999999999999999985

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.57  E-value=8.3e-07  Score=76.16  Aligned_cols=107  Identities=18%  Similarity=0.206  Sum_probs=69.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc--------ccccccchhcHH----------HHH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL--------PFAANIDIRDTI----------RYK  127 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~----------~~~  127 (324)
                      .+++.+|+|+|++|||||||++.|++...++.+.+.+.+.-......        ++..++-++..+          .++
T Consensus        50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~  129 (249)
T COG1134          50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVD  129 (249)
T ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence            46788999999999999999999999999988877765542211111        111111111100          122


Q ss_pred             HHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCC
Q 020549          128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP  174 (324)
Q Consensus       128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp  174 (324)
                      ++.+--.|++  -+..++..+|+||.-++....+...+++++|+|..
T Consensus       130 eIieFaELG~--fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv  174 (249)
T COG1134         130 EIIEFAELGD--FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV  174 (249)
T ss_pred             HHHHHHHHHH--HhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence            2322222222  13456667999999998888888888999999976

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.57  E-value=2e-06  Score=80.28  Aligned_cols=148  Identities=14%  Similarity=0.102  Sum_probs=78.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc-cCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT-QSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..++++|++||||||++..|+... ...+..+.++..|+.-.          ..........+..++..     ..  
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~----------aA~eQLk~yAe~lgvp~-----~~--  284 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI----------AAIEQLKRYADTMGMPF-----YP--  284 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh----------hHHHHHHHHHHhcCCCe-----ee--
Confidence            35679999999999999999998754 34456676655554211          00011112222222211     00  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhcc---CCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST---FPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~---~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                        ..........+.  ..+.+++|+||||....  .......+...+...   ...-.++|+|+..+.......      
T Consensus       285 --~~~~~~l~~~l~--~~~~D~VLIDTaGr~~r--d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~------  352 (432)
T PRK12724        285 --VKDIKKFKETLA--RDGSELILIDTAGYSHR--NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV------  352 (432)
T ss_pred             --hHHHHHHHHHHH--hCCCCEEEEeCCCCCcc--CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH------
Confidence              011222233332  25789999999996432  122222333333221   234678899997765333222      


Q ss_pred             HHHHhhcCCCeEEEeeccccCC
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      +..+...+ +-=+|++|.|-..
T Consensus       353 ~~~f~~~~-~~glIlTKLDEt~  373 (432)
T PRK12724        353 LKAYESLN-YRRILLTKLDEAD  373 (432)
T ss_pred             HHHhcCCC-CCEEEEEcccCCC
Confidence            12232222 3478999999754

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.57  E-value=4.9e-07  Score=77.48  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc------ccc---------------h--h-
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA------NID---------------I--R-  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~------~~~---------------~--~-  121 (324)
                      .+++.++++|||+|||||||+|.+++...+..+.+.+.+.+.+-..-....      ++.               +  . 
T Consensus        27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~  106 (250)
T COG0411          27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHA  106 (250)
T ss_pred             EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhh
Confidence            467888999999999999999999999999888888776654321100000      010               0  0 


Q ss_pred             -------------------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                         .+....++++.++|.......  -..++.+.+.+++++.+...+++++++|.|-
T Consensus       107 ~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~--A~~LsyG~qR~LEIArALa~~P~lLLLDEPa  177 (250)
T COG0411         107 RLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP--AGNLSYGQQRRLEIARALATQPKLLLLDEPA  177 (250)
T ss_pred             hhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch--hhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence                               001233556667776643322  2248889999999999999999999999884

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.57  E-value=5.2e-07  Score=77.66  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------ccccccc----cchhc-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAAN----IDIRD-------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~~~~~~~----~~~~~-------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+....            ..+....    ..+.+       
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~  102 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI  102 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHH
Confidence            346778999999999999999999998777666666654432100            0000000    00011       


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++...  .......+|.|+++++..+.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~  163 (213)
T cd03262         103 KVKGMSKAEAEERALELLEKVGLADK--ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT  163 (213)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCHhH--hhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                      0123456667776532  12233469999999999999999999999999885

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=8.1e-07  Score=82.46  Aligned_cols=164  Identities=18%  Similarity=0.266  Sum_probs=98.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHH-HHH----HHHHHcCCCCCCc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI-RYK----EVMKQFNLGPNGG  140 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~  140 (324)
                      .++|+.|++||-+||||||=+..++-.....+..+.|...|+..+.--.    .+|.-+ ++.    .+++.|.=+ +|+
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvE----QLrtHv~rl~~l~~~~v~lfekG-Ygk  449 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE----QLRTHVERLSALHGTMVELFEKG-YGK  449 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHH----HHHHHHHHHHHhccchhHHHhhh-cCC
Confidence            4588999999999999999999999888888888888777654321100    011111 110    111222111 111


Q ss_pred             ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                      -      -..-.++.+..++  ..+++++++||+|-..-  ...+...+.+.+....+|.|+||=-+--+-+..+.....
T Consensus       450 d------~a~vak~AI~~a~--~~gfDVvLiDTAGR~~~--~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~f  519 (587)
T KOG0781|consen  450 D------AAGVAKEAIQEAR--NQGFDVVLIDTAGRMHN--NAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKF  519 (587)
T ss_pred             C------hHHHHHHHHHHHH--hcCCCEEEEeccccccC--ChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHH
Confidence            1      1112233344444  66899999999994332  234555566666667789999998776665555544433


Q ss_pred             HHHHHHHhhcCCC---eEEEeeccccCChH
Q 020549          221 LYACSILYKTRLP---LVLAFNKTDVAQHE  247 (324)
Q Consensus       221 ~~~~~~~~~~~~p---~ilv~NK~Dl~~~~  247 (324)
                      -   ..+.....|   --++++|+|-++..
T Consensus       520 n---~al~~~~~~r~id~~~ltk~dtv~d~  546 (587)
T KOG0781|consen  520 N---RALADHSTPRLIDGILLTKFDTVDDK  546 (587)
T ss_pred             H---HHHhcCCCccccceEEEEeccchhhH
Confidence            3   333333333   36799999988754

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.56  E-value=5.9e-07  Score=78.40  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----cccccc----ccchhc---------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----TLPFAA----NIDIRD---------------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----~~~~~~----~~~~~~---------------  122 (324)
                      .++..++|+|++|+|||||++.|.+...+..+.+.+.+.+....     ..+...    ...+.+               
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~   88 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK   88 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence            46778999999999999999999999877766666544332100     000000    000000               


Q ss_pred             ---HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ---TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         ...+.++++.+++...  .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus        89 ~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  142 (230)
T TIGR01184        89 SERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF  142 (230)
T ss_pred             HHHHHHHHHHHHHcCCHHH--HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence               1123456777777532  22334569999999999999999999999999884

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.56  E-value=2.7e-06  Score=81.23  Aligned_cols=148  Identities=15%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCC-c-ceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR-N-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ++.+++++|++||||||++..|.+..... + ..+.++..|+..        +  .-...+..+.+.+++....      
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R--------i--gA~EQLr~~AeilGVpv~~------  318 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR--------I--GGHEQLRIYGKILGVPVHA------  318 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc--------h--hHHHHHHHHHHHhCCCeec------
Confidence            46789999999999999999999876433 2 255555444310        0  1111122223333322110      


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhcc-CCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                        ...........  ....+.+++++||+|....   ..........+... ...-.++|+|+..+.....      ...
T Consensus       319 --~~~~~Dl~~aL--~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~------~i~  385 (484)
T PRK06995        319 --VKDAADLRLAL--SELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN------EVV  385 (484)
T ss_pred             --cCCchhHHHHH--HhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH------HHH
Confidence              01111111111  2234678999999995432   11111112222221 1233688899866543222      112


Q ss_pred             HHHhhcCCCeEEEeeccccCC
Q 020549          225 SILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+...+ ..-+|+||+|-..
T Consensus       386 ~~f~~~~-~~g~IlTKlDet~  405 (484)
T PRK06995        386 QAYRGPG-LAGCILTKLDEAA  405 (484)
T ss_pred             HHhccCC-CCEEEEeCCCCcc
Confidence            3333333 3457799999654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.56  E-value=4.7e-07  Score=78.02  Aligned_cols=107  Identities=11%  Similarity=0.102  Sum_probs=71.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------cccccccc----cchhc-------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAAN----IDIRD-------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~----~~~~~-------  122 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...             ...+....    ..+.+       
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~  104 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE  104 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence            4677899999999999999999999877766666554433211             00000000    00111       


Q ss_pred             ---------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                               ...+.++++.+++....  -.....+|.|++|++..+.+....++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  164 (214)
T cd03292         105 VTGVPPREIRKRVPAALELVGLSHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADEPT  164 (214)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHHHh--hCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                     11234567777765321  1233469999999999999999999999999885

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.56  E-value=4.2e-07  Score=78.26  Aligned_cols=107  Identities=16%  Similarity=0.170  Sum_probs=70.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------ccccccc----ccchhc------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAA----NIDIRD------------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~~----~~~~~~------------  122 (324)
                      .++..++|+|++|+|||||++.|++...+..+.+.+.+.+...        ...+...    ...+.+            
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~  103 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP  103 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC
Confidence            4677899999999999999999999877666665554433210        0000000    000111            


Q ss_pred             ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ...+.++++.+++...  .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus       104 ~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt  158 (213)
T cd03301         104 KDEIDERVREVAELLQIEHL--LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL  158 (213)
T ss_pred             HHHHHHHHHHHHHHcCCHHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                1123455677776532  12233469999999999999999999999999884

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.56  E-value=5e-07  Score=78.88  Aligned_cols=108  Identities=17%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------cccccccc----cchhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAAN----IDIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~----~~~~~--------  122 (324)
                      -.++.+++|+|++|+|||||++.|++...+..+.+.+.+.+...           ...+....    ..+++        
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  102 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEI  102 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHh
Confidence            34677899999999999999999999877766666554432110           00000000    00111        


Q ss_pred             --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              ...+.++++.+++....  ......+|.|+++++..+.+....++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  161 (232)
T cd03218         103 RGLSKKEREEKLEELLEEFHITHLR--KSKASSLSGGERRRVEIARALATNPKFLLLDEPF  161 (232)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence                    11234567777765321  2233469999999999999999999999999884

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.56  E-value=1.1e-06  Score=87.70  Aligned_cols=151  Identities=14%  Similarity=0.111  Sum_probs=77.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccC-Cc-ceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS-RN-IRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .+.+|+++|++||||||++..|.+.... .+ ..+.++..|..-        +  ........+.+.+++....  ..  
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--------i--gA~eQL~~~a~~~gvpv~~--~~--  249 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--------I--GALEQLRIYGRILGVPVHA--VK--  249 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--------h--HHHHHHHHHHHhCCCCccc--cC--
Confidence            4568999999999999999999987632 33 366665544211        0  0111112222333321110  00  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                           ........+. ...+.+++||||||....  .......+.........+-+++|+|+........   +..   .
T Consensus       250 -----~~~~l~~al~-~~~~~D~VLIDTAGRs~~--d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~---~i~---~  315 (767)
T PRK14723        250 -----DAADLRFALA-ALGDKHLVLIDTVGMSQR--DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN---EVV---H  315 (767)
T ss_pred             -----CHHHHHHHHH-HhcCCCEEEEeCCCCCcc--CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH---HHH---H
Confidence                 1111111222 234679999999995332  1122223322222334577899999875332221   111   2


Q ss_pred             HHhhc-C-CCeEEEeeccccCCh
Q 020549          226 ILYKT-R-LPLVLAFNKTDVAQH  246 (324)
Q Consensus       226 ~~~~~-~-~p~ilv~NK~Dl~~~  246 (324)
                      .+... . -+-=+|++|.|-...
T Consensus       316 ~f~~~~~~~i~glIlTKLDEt~~  338 (767)
T PRK14723        316 AYRHGAGEDVDGCIITKLDEATH  338 (767)
T ss_pred             HHhhcccCCCCEEEEeccCCCCC
Confidence            22221 0 133678999997643

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.56  E-value=5.3e-07  Score=77.52  Aligned_cols=108  Identities=16%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cc-------c---ccccccch--h----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MT-------L---PFAANIDI--R----  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~-------~---~~~~~~~~--~----  121 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...        ..       +   +...++..  .    
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~  100 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK  100 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC
Confidence            35678899999999999999999999877666655554432110        00       0   00001100  0    


Q ss_pred             ----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ....+.++++.+++.....  .....+|.|+++++..+.+....++++|+|.|-
T Consensus       101 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~  156 (211)
T cd03298         101 LTAEDRQAIEVALARVGLAGLEK--RLPGELSGGERQRVALARVLVRDKPVLLLDEPF  156 (211)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHh--CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                1113456677777754221  223469999999999999999999999999885

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.56  E-value=1.5e-06  Score=80.60  Aligned_cols=107  Identities=20%  Similarity=0.234  Sum_probs=75.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR-----  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~-----  121 (324)
                      ..+.+++|+|++|+|||||++.|.+...+..+.+.+.+.+....               -+|.   ..++.  .+     
T Consensus        28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~  107 (353)
T TIGR03265        28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG  107 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC
Confidence            45778999999999999999999999887776666654432100               0000   00110  00     


Q ss_pred             ---cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         ....+.++++.+++.....  .....+|.|++|++..+++....++++|+|.|-
T Consensus       108 ~~~~~~~~~~~l~~l~L~~~~~--~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~  162 (353)
T TIGR03265       108 RAEVAERVAELLDLVGLPGSER--KYPGQLSGGQQQRVALARALATSPGLLLLDEPL  162 (353)
T ss_pred             HHHHHHHHHHHHHHcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence               0224567888888865322  233469999999999999999999999999994

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.56  E-value=1.6e-06  Score=79.84  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCcccccccccccchhcH-HHHHHHHHHcCCCCCCccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPAVMTLPFAANIDIRDT-IRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ++.+|+++||.||||||.+-.|.....  .....+.++..|.    |..+.    ..+ ..|.++|   ++..  ..+.+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt----YRIGA----~EQLk~Ya~im---~vp~--~vv~~  268 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT----YRIGA----VEQLKTYADIM---GVPL--EVVYS  268 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc----chhhH----HHHHHHHHHHh---CCce--EEecC
Confidence            477899999999999999999988766  4556777755442    22221    111 1222222   2211  11111


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                          ...+.+.+..    ..+.+++|+||+|-...  ....-..+...+......-+.+|+++.....+...      .+
T Consensus       269 ----~~el~~ai~~----l~~~d~ILVDTaGrs~~--D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke------i~  332 (407)
T COG1419         269 ----PKELAEAIEA----LRDCDVILVDTAGRSQY--DKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE------II  332 (407)
T ss_pred             ----HHHHHHHHHH----hhcCCEEEEeCCCCCcc--CHHHHHHHHHHHhccccceEEEEEecCcchHHHHH------HH
Confidence                1112222222    23679999999995432  22233344444444444556677777544333321      12


Q ss_pred             HHHhhcCCCeEEEeeccccCC
Q 020549          225 SILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+...++. =++++|+|-..
T Consensus       333 ~~f~~~~i~-~~I~TKlDET~  352 (407)
T COG1419         333 KQFSLFPID-GLIFTKLDETT  352 (407)
T ss_pred             HHhccCCcc-eeEEEcccccC
Confidence            233332222 56899999653

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=5.1e-07  Score=77.45  Aligned_cols=107  Identities=13%  Similarity=0.145  Sum_probs=71.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------ccccccc----ccchhc------------H
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------MTLPFAA----NIDIRD------------T  123 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------~~~~~~~----~~~~~~------------~  123 (324)
                      .++..++|+|++|+|||||++.|++...+..+.+.+.+.+...       ...+...    ...+.+            .
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~  105 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE  105 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence            5678899999999999999999999877776666654433110       0000000    000111            1


Q ss_pred             HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+.++++.+++...  .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       106 ~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  155 (207)
T PRK13539        106 LDIAAALEAVGLAPL--AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT  155 (207)
T ss_pred             HHHHHHHHHcCCHHH--HcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            124566777777532  12233469999999999999999999999999885

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.55  E-value=1.5e-06  Score=76.47  Aligned_cols=108  Identities=12%  Similarity=0.161  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------ccccccc----ccchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAA----NIDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~----~~~~~~------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...             ...+...    ...+.+      
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  104 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR  104 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcc
Confidence            35677899999999999999999999877666666554433210             0000000    000000      


Q ss_pred             ------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                        ...+.++++.+++...  .......+|.|+++++.++.+...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  173 (243)
T TIGR02315       105 LGYKPTWRSLLGRFSEEDKERALSALERVGLADK--AYQRADQLSGGQQQRVAIARALAQQPDLILADEPI  173 (243)
T ss_pred             cccccchhhhhccccHHHHHHHHHHHHHcCcHhh--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                              1123456777776532  12233469999999999999999999999999884

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.55  E-value=5.1e-07  Score=79.37  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------cccccccc----cchhc---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAAN----IDIRD---------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~----~~~~~---------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+...          ...+....    ..+.+         
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~  103 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL  103 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc
Confidence            35677899999999999999999999877766666554433210          00000000    00111         


Q ss_pred             -------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ...+.++++.+++....-.......+|.|++|++.++.+....++++|+|.|-
T Consensus       104 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  163 (242)
T cd03295         104 KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF  163 (242)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence                   11345667788876400112233469999999999999999999999999984

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.55  E-value=5.2e-07  Score=77.40  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=71.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccccc----cchhc------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAAN----IDIRD------------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~~~----~~~~~------------  122 (324)
                      .++..++|+|++|+|||||++.|.+...+..+.+.+.+.+...        ...+....    ..+.+            
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~  103 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR  103 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCc
Confidence            4677899999999999999999999877766666665443210        00000000    01111            


Q ss_pred             HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++.+++....  -.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       104 ~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  154 (208)
T cd03268         104 KKRIDEVLDVVGLKDSA--KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT  154 (208)
T ss_pred             HHHHHHHHHHcCCHHHH--hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            11345567777775321  1233469999999999999999999999999885

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd01855 YqeH YqeH

Probab=98.55  E-value=3.7e-07  Score=77.21  Aligned_cols=91  Identities=22%  Similarity=0.226  Sum_probs=55.6

Q ss_pred             CCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH-HHHHHHhcCccchhhHHH
Q 020549          197 FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE-VFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       197 ~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~  275 (324)
                      .+|++++|+|+++....   |...+    .....++|+++|+||+|+............+. .+..             +
T Consensus        34 ~ad~il~VvD~~~~~~~---~~~~l----~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-------------~   93 (190)
T cd01855          34 KKALVVHVVDIFDFPGS---LIPRL----RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA-------------A   93 (190)
T ss_pred             CCcEEEEEEECccCCCc---cchhH----HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH-------------h
Confidence            46899999999764322   11111    11234689999999999975432111111111 0000             0


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      .      ......+++++||++|.|+++|++.|.+.++
T Consensus        94 ~------~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          94 G------LGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             h------cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            0      0011246899999999999999999998775

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=9.3e-07  Score=76.97  Aligned_cols=109  Identities=20%  Similarity=0.227  Sum_probs=76.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----ccc----------c----ccccc---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----MTL----------P----FAANI---------  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----~~~----------~----~~~~~---------  118 (324)
                      ..++..++|+|++|+|||||++.|.+-..+..+.+.+.+.+...    ...          |    +.+++         
T Consensus        27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~  106 (235)
T COG1122          27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE  106 (235)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence            34677899999999999999999999998887777665544221    000          0    00000         


Q ss_pred             --ch-h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          119 --DI-R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       119 --~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                        .+ +  -..++.++++.+++....  ......+|.|.+|++.++.....+++++++|.|.-
T Consensus       107 n~g~~~~e~~~rv~~~l~~vgl~~~~--~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta  167 (235)
T COG1122         107 NLGLPREEIEERVAEALELVGLEELL--DRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA  167 (235)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCchhhc--cCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence              01 1  122566778888876652  23334699999999999999999999999998863

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.5e-06  Score=81.23  Aligned_cols=107  Identities=14%  Similarity=0.200  Sum_probs=72.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR-----  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~-----  121 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+....               -++.   ..++.  .+     
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~  106 (369)
T PRK11000         27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK  106 (369)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC
Confidence            46778999999999999999999998877666665544332100               0000   00000  00     


Q ss_pred             -c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       .  ...+.++++.+++.....  .....+|.|++|++.++++...+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~l~~lgL~~~~~--~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt  161 (369)
T PRK11000        107 KEEINQRVNQVAEVLQLAHLLD--RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (369)
T ss_pred             HHHHHHHHHHHHHHcCChhhhc--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence             0  123556788888854222  233469999999999999999999999999985

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.54  E-value=5.1e-07  Score=77.76  Aligned_cols=107  Identities=15%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC--------------Ccccc-cccc--cccch---------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD--------------PAVMT-LPFA--ANIDI---------  120 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d--------------~~~~~-~~~~--~~~~~---------  120 (324)
                      ..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+              +.... .+.+  .++..         
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~  102 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF  102 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccc
Confidence            4677899999999999999999999876665555543322              11100 0000  00000         


Q ss_pred             -----hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           .....+.++++.+++...  .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  160 (213)
T cd03235         103 RRLSKADKAKVDEALERVGLSEL--ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF  160 (213)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHH--HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                 011234566777777532  12233469999999999999999999999999985

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.54  E-value=2e-06  Score=81.52  Aligned_cols=148  Identities=18%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +..++++|++||||||++..|.....  ..+..+.+++.|+...    +      ....+..+.+..++....  ..   
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~----~------a~eqL~~~a~~~~vp~~~--~~---  285 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI----G------AVEQLKTYAKIMGIPVEV--VY---  285 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH----H------HHHHHHHHHHHhCCceEc--cC---
Confidence            55899999999999999999987654  3456677765554210    0      000111122222221100  00   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                          ........+.. ....+++|+||||....  .......+...+. .....-+.+|+++..........      +.
T Consensus       286 ----~~~~l~~~l~~-~~~~DlVlIDt~G~~~~--d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~------~~  352 (424)
T PRK05703        286 ----DPKELAKALEQ-LRDCDVILIDTAGRSQR--DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI------YK  352 (424)
T ss_pred             ----CHHhHHHHHHH-hCCCCEEEEeCCCCCCC--CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH------HH
Confidence                01111112222 23689999999996443  1122223333333 22335667788886543332211      12


Q ss_pred             HHhhcCCCeEEEeeccccCC
Q 020549          226 ILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      .+...+ +.-++++|+|-..
T Consensus       353 ~f~~~~-~~~vI~TKlDet~  371 (424)
T PRK05703        353 HFSRLP-LDGLIFTKLDETS  371 (424)
T ss_pred             HhCCCC-CCEEEEecccccc
Confidence            333333 2368999999754

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.54  E-value=6e-07  Score=83.43  Aligned_cols=107  Identities=20%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCc--ceEEEeccCCccc---------------cccc---ccccc--hh---
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAVM---------------TLPF---AANID--IR---  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~--~~~~i~~~d~~~~---------------~~~~---~~~~~--~~---  121 (324)
                      ..+..++|+|++|+|||||++.|.+...+..  +.+.+.+.+....               -++.   ..++.  .+   
T Consensus        29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~  108 (362)
T TIGR03258        29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK  108 (362)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC
Confidence            4567899999999999999999999887777  6666655432100               0000   00010  00   


Q ss_pred             -----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ....+.++++.+++.....  .....+|.|++|++.++++....++++++|.|=
T Consensus       109 ~~~~~~~~~v~~~l~~~gL~~~~~--~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~  165 (362)
T TIGR03258       109 MPKADIAERVADALKLVGLGDAAA--HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL  165 (362)
T ss_pred             CCHHHHHHHHHHHHHhcCCCchhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence                 0124567788888865332  233479999999999999999999999999984

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.54  E-value=5e-07  Score=74.76  Aligned_cols=96  Identities=11%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      -.++.+++|+|++|+|||||++.|++...+..+.+.+.+.. .+...+....+. .  .++.+.   +.+.       ..
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~-~i~~~~q~~~~~-~--~tv~~n---l~~~-------~~   89 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE-DLLFLPQRPYLP-L--GTLREQ---LIYP-------WD   89 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCc-eEEEECCCCccc-c--ccHHHH---hhcc-------CC
Confidence            35677899999999999999999999877666655443210 011111111110 0  011111   1111       23


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+|.++++++..+.+...+++++++|.|-
T Consensus        90 ~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          90 DVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            469999999999999999999999999985

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.54  E-value=1e-06  Score=73.74  Aligned_cols=102  Identities=22%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---cccccccchhcHHHHHHHHHHcCCCCCCccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAANIDIRDTIRYKEVMKQFNLGPNGGIL  142 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  142 (324)
                      -.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+.....   ......+..        +.....+..+..+.
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~--------~~q~~~~~~~~t~~   94 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM--------VFQDFALFPHLTVL   94 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE--------EecCCccCCCCCHH
Confidence            3567789999999999999999999987777677666554321100   000000000        00000011100110


Q ss_pred             ccccc-cChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          143 TSLNL-FTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      -.... +|.|+++++..+.+...+++++++|.|-
T Consensus        95 ~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          95 ENIALGLSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             HheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            00111 8999999999999999999999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.54  E-value=1.6e-06  Score=80.50  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=74.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh-----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR-----  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~-----  121 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+....               -++.   ..++.  .+     
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~  105 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRR  105 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccc
Confidence            46778999999999999999999999877766666655432100               0000   00000  00     


Q ss_pred             -------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ....+.++++.+++.....  .....+|.|++|++.++++....++++|+|.|-
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~  164 (353)
T PRK10851        106 ERPNAAAIKAKVTQLLEMVQLAHLAD--RYPAQLSGGQKQRVALARALAVEPQILLLDEPF  164 (353)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                   0124556788888864322  233469999999999999999999999999984

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.53  E-value=6.1e-07  Score=80.20  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=72.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccc----ccchhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAA----NIDIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~----~~~~~~-----  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...              ...+...    ...+.+     
T Consensus        47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  126 (269)
T cd03294          47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFG  126 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHH
Confidence            35678899999999999999999999877766666554432210              0000000    000111     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++....  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt  188 (269)
T cd03294         127 LEVQGVPRAEREERAAEALELVGLEGWE--HKYPDELSGGMQQRVGLARALAVDPDILLMDEAF  188 (269)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCHhHh--hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                       11244667777775422  2223469999999999999999999999999885

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.53  E-value=7e-07  Score=75.00  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=63.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------ccccccc----chhcHHHHHHHHHHc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------LPFAANI----DIRDTIRYKEVMKQF  133 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~  133 (324)
                      -..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+.....        ..+...-    ......++.+.+...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~  102 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS  102 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence            3467789999999999999999999998887777776654432110        0000000    000000111111000


Q ss_pred             CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                  ..+|.|+++++..+.+...+++++|+|.|-
T Consensus       103 ------------~~LS~G~~qrl~la~al~~~p~llllDEP~  132 (182)
T cd03215         103 ------------SLLSGGNQQKVVLARWLARDPRVLILDEPT  132 (182)
T ss_pred             ------------hhcCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence                        018999999999999999999999999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.53  E-value=1.9e-06  Score=80.40  Aligned_cols=108  Identities=16%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR----  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~----  121 (324)
                      ...+..++|+|++|+|||||++.|+|...+..+.+.+.+.+..-.               -+|.   ..++.  .+    
T Consensus        37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~  116 (375)
T PRK09452         37 INNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT  116 (375)
T ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC
Confidence            346778999999999999999999998877766665554432100               0000   00110  00    


Q ss_pred             --c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 --D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 --~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .  ...+.++++.+++.....  .....+|.|++|++.++++....++++|+|.|-
T Consensus       117 ~~~~~~~~~~~~l~~~~l~~~~~--~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~  172 (375)
T PRK09452        117 PAAEITPRVMEALRMVQLEEFAQ--RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL  172 (375)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence              0  113456777788764322  233469999999999999999999999999995

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.53  E-value=1.6e-06  Score=81.12  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc---------------------cccccccccc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------------VMTLPFAANI------  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~---------------------~~~~~~~~~~------  118 (324)
                      ...+.+-+++|.+|||||||++.|.|...+..+.+.+.+....                     +..++...++      
T Consensus        27 v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~  106 (501)
T COG3845          27 VKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP  106 (501)
T ss_pred             ecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence            4567789999999999999999999999888776666544322                     1222222221      


Q ss_pred             ------ch-hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          119 ------DI-RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       119 ------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                            +. ..+..+.++++.+|+..+-....  ..++-+.+|++++++++..+.+++|+|.|--
T Consensus       107 ~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa  169 (501)
T COG3845         107 SKGGLIDRRQARARIKELSERYGLPVDPDAKV--ADLSVGEQQRVEILKALYRGARLLILDEPTA  169 (501)
T ss_pred             ccccccCHHHHHHHHHHHHHHhCCCCCcccee--ecCCcchhHHHHHHHHHhcCCCEEEEcCCcc
Confidence                  11 11235678899999877643222  2489999999999999999999999999963

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.53  E-value=1.9e-06  Score=75.67  Aligned_cols=108  Identities=12%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+....             ..+....    ..+.+      
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  103 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR  103 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhh
Confidence            356778999999999999999999998776666665544332110             0000000    00111      


Q ss_pred             ------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                        ...+.++++.+++....  ......+|.|++|++.++.+...+++++|+|.|-
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  172 (241)
T cd03256         104 LGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA--YQRADQLSGGQQQRVAIARALMQQPKLILADEPV  172 (241)
T ss_pred             cccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh--CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence                              11234556677765321  2233469999999999999999999999999884

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=2e-06  Score=80.83  Aligned_cols=108  Identities=17%  Similarity=0.236  Sum_probs=74.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----------cccc---cc----ccchhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPF---AA----NIDIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----------~~~~---~~----~~~~~~-----  122 (324)
                      ...+..++|+|++|+|||||++.|.+...+..+.+.+.+.+....           .+.+   ..    ...+.+     
T Consensus        51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~  130 (400)
T PRK10070         51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG  130 (400)
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHH
Confidence            456788999999999999999999998877777666655432100           0000   00    000011     


Q ss_pred             -----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                 ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       131 ~~~~~~~~~~~~~~~~e~L~~~gL~~~~~--~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt  192 (400)
T PRK10070        131 MELAGINAEERREKALDALRQVGLENYAH--SYPDELSGGMRQRVGLARALAINPDILLMDEAF  192 (400)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCChhhh--cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence                       113456788888864322  233469999999999999999999999999984

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=7.7e-07  Score=78.25  Aligned_cols=107  Identities=13%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc----------------ccccccccc----cchhc----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------------VMTLPFAAN----IDIRD----  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~----------------~~~~~~~~~----~~~~~----  122 (324)
                      .++..++|+|++|+|||||++.|+|...+..+.+.+.+.+..                +...+....    ..+.+    
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~  105 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIE  105 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHH
Confidence            467789999999999999999999998777666666554321                000000000    00111    


Q ss_pred             -------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                   ...+.++++.+++....  -.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~laral~~~p~llilDEPt  169 (242)
T PRK11124        106 APCRVLGLSKDQALARAEKLLERLRLKPYA--DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT  169 (242)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhhh--hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                         11234556677775322  2233469999999999999999999999999884

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=2.1e-06  Score=77.15  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccc-----ccchhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAA-----NIDIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~-----~~~~~~--------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+.....          .+...     ...+.+        
T Consensus        30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~  109 (279)
T PRK13635         30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN  109 (279)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence            3567789999999999999999999998777777766554432100          00000     000111        


Q ss_pred             --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              ...+..+++.+++...  .......+|.|+++++.++.+....++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~~~l~~~gL~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  168 (279)
T PRK13635        110 IGVPREEMVERVDQALRQVGMEDF--LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT  168 (279)
T ss_pred             CCCCHHHHHHHHHHHHHHcCChhh--hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                    1124566777777643  22334469999999999999999999999999884

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.53  E-value=8.5e-07  Score=77.95  Aligned_cols=108  Identities=17%  Similarity=0.193  Sum_probs=72.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------c---cccc----ccchh---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------L---PFAA----NIDIR---------  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------~---~~~~----~~~~~---------  121 (324)
                      -.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+.....        .   +...    ...+.         
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~  104 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPR  104 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc
Confidence            3567789999999999999999999987776666666554321100        0   0000    00011         


Q ss_pred             ---------------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ---------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                     ....+.++++.+++....  ......+|.|+++++..+.+...+++++++|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt  171 (242)
T TIGR03411       105 DKSVFASLFFRLSAEEKDRIEEVLETIGLADEA--DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV  171 (242)
T ss_pred             ccccccccccccHHHHHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence                           111345667777775422  2233469999999999999999999999999885

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.52  E-value=7.2e-07  Score=77.93  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccccccc----cchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAAN----IDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~----~~~~~------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+....             ..+....    ..+.+      
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~  107 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL  107 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHH
Confidence            356788999999999999999999999877776666654432110             0000000    00111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++...  .......+|.|+++++.++.+....++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~  168 (233)
T cd03258         108 EIAGVPKAEIEERVLELLELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT  168 (233)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCChhh--hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence                      1123456777777532  12233469999999999999999999999999985

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.52  E-value=2.3e-06  Score=74.48  Aligned_cols=107  Identities=15%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~------  122 (324)
                      .++..++|+|++|+|||||++.|++...+..+.+.+.+.+...              ...+....    ..+.+      
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~  113 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPA  113 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHH
Confidence            5678899999999999999999999876666555544332210              00000000    00000      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++...  .-.....+|.|+++++.++.+...+++++|+|.|-
T Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt  174 (228)
T PRK10584        114 LLRGESSRQSRNGAKALLEQLGLGKR--LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT  174 (228)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCHhH--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                      1134566777777532  12233469999999999999999999999999985

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.52  E-value=1.6e-06  Score=75.81  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      -.++..++|+|.+|+|||||-+.+++-..++.+.+.+-+.+..-..       .......+.++++.+|+...- .....
T Consensus        36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------~~~~~~~v~elL~~Vgl~~~~-~~ryP  107 (268)
T COG4608          36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------KEERRERVLELLEKVGLPEEF-LYRYP  107 (268)
T ss_pred             EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------hhHHHHHHHHHHHHhCCCHHH-hhcCC
Confidence            4577889999999999999999999999999888888666532211       002223577889999866532 22334


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                      ++||.|++|++.++++...++++++.|.|=-
T Consensus       108 helSGGQrQRi~IARALal~P~liV~DEpvS  138 (268)
T COG4608         108 HELSGGQRQRIGIARALALNPKLIVADEPVS  138 (268)
T ss_pred             cccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence            5799999999999999999999999999963

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.52  E-value=2.1e-06  Score=79.74  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc--------------cccccc----ccchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------TLPFAA----NIDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~----~~~~~~------  122 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+....              ..+...    ...+++      
T Consensus        21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  100 (354)
T TIGR02142        21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGM  100 (354)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHh
Confidence            46778999999999999999999998777666655544332100              000000    001111      


Q ss_pred             --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       101 ~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt  159 (354)
T TIGR02142       101 KRARPSERRISFERVIELLGIGHLLG--RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL  159 (354)
T ss_pred             hccChhHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence                    113456778888764322  223469999999999999999999999999984

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=2.1e-06  Score=79.51  Aligned_cols=108  Identities=16%  Similarity=0.247  Sum_probs=73.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--hh----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--IR----  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~~----  121 (324)
                      ...+..++|+|++|+|||||++.|.+...+..+.+.+.+.+..-.               -+|.   ..++.  .+    
T Consensus        29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~  108 (351)
T PRK11432         29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV  108 (351)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC
Confidence            346778999999999999999999999887766666554332100               0010   00010  00    


Q ss_pred             ---c-HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ---D-TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ---~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         . ...+.++++.+++.....  .....+|.|++|++.++++....++++|+|.|=
T Consensus       109 ~~~~~~~~v~~~l~~~gl~~~~~--r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~  164 (351)
T PRK11432        109 PKEERKQRVKEALELVDLAGFED--RYVDQISGGQQQRVALARALILKPKVLLFDEPL  164 (351)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence               0 124456777888764332  223469999999999999999999999999984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.52  E-value=6.8e-07  Score=78.67  Aligned_cols=85  Identities=13%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLT  274 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~  274 (324)
                      ..+|.+++|+|..........+..++   ..+...++|+++|+||+||.+..... ++.+.+.                 
T Consensus        35 ~n~D~viiV~d~~~p~~s~~~l~r~l---~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-----------------   94 (245)
T TIGR00157        35 ANIDQIVIVSSAVLPELSLNQLDRFL---VVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR-----------------   94 (245)
T ss_pred             ccCCEEEEEEECCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-----------------
Confidence            34588888888764332222221112   22334689999999999997644221 1111111                 


Q ss_pred             HHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          275 NSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       275 ~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                              .  .+.+++++||++|.|+++||..|..
T Consensus        95 --------~--~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 --------N--IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             --------H--CCCeEEEEecCCchhHHHHHhhhcC
Confidence                    1  2468999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.52  E-value=2.2e-06  Score=75.18  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------c----------ccccccccch----h--
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------M----------TLPFAANIDI----R--  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~----------~~~~~~~~~~----~--  121 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...        .          ..+...++..    .  
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  104 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPR  104 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccc
Confidence            34677899999999999999999999877666655554432110        0          0000000000    0  


Q ss_pred             ----c----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ----D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          .    ...+.++++.+++....  ......+|.|++|++.++.+...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~  164 (239)
T cd03296         105 SERPPEAEIRAKVHELLKLVQLDWLA--DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF  164 (239)
T ss_pred             cccCCHHHHHHHHHHHHHHcCChhhh--hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                0    11234567777775322  1223469999999999999999999999999884

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.52  E-value=2.4e-06  Score=79.75  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccC----CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~----~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (324)
                      .+..|+++|++|+||||.+..|......    .+..+.+++.|+...          ........+.+.+++..    ..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~----------aa~eQL~~~a~~lgvpv----~~  238 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI----------GAKKQIQTYGDIMGIPV----KA  238 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH----------HHHHHHHHHhhcCCcce----Ee
Confidence            4568999999999999999999876432    345666665553210          11111222222222211    00


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCc-EEEEEEcCCCCCCchhHHHhHHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPT-VVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d-~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                           ..........+. ...+.+++|+||||....  ....-..+.+.+.....+ -+++|+|+..+......   .+ 
T Consensus       239 -----~~~~~~l~~~L~-~~~~~DlVLIDTaGr~~~--~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~---~~-  306 (388)
T PRK12723        239 -----IESFKDLKEEIT-QSKDFDLVLVDTIGKSPK--DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE---IF-  306 (388)
T ss_pred             -----eCcHHHHHHHHH-HhCCCCEEEEcCCCCCcc--CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH---HH-
Confidence                 001111111122 235789999999995432  111112333333333333 57899999776433321   11 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCCh
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                        ..+... -+-=++++|.|-...
T Consensus       307 --~~~~~~-~~~~~I~TKlDet~~  327 (388)
T PRK12723        307 --HQFSPF-SYKTVIFTKLDETTC  327 (388)
T ss_pred             --HHhcCC-CCCEEEEEeccCCCc
Confidence              222221 134789999997643

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.52  E-value=7.6e-07  Score=77.91  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=71.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------cccccccc----cchhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAAN----IDIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~~----~~~~~--------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...           ...+....    ..+++        
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~  102 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQA  102 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhh
Confidence            35677899999999999999999999876666555554432110           00000000    00000        


Q ss_pred             ------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                        ...+.++++.+++...  .-.....+|.|++|++..+.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  171 (236)
T cd03219         103 RTGSGLLLARARREEREARERAEELLERVGLADL--ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA  171 (236)
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHcCccch--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                              1134566777777542  22334469999999999999999999999999885

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10908 cell division protein FtsE; Provisional

Probab=98.52  E-value=8e-07  Score=77.09  Aligned_cols=108  Identities=12%  Similarity=0.155  Sum_probs=71.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------ccccccccc----chhcHH----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAANI----DIRDTI----  124 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~~----~~~~~~----  124 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...             ...+....+    .+.+.+    
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  104 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL  104 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHH
Confidence            35678899999999999999999999877766666654433210             000000000    011111    


Q ss_pred             ------------HHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          125 ------------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       125 ------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                  .+.++++.+++...  .-.....+|.|+++++..+.+....++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (222)
T PRK10908        105 IIAGASGDDIRRRVSAALDKVGLLDK--AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT  165 (222)
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCChhh--hhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                        23456677776542  12233469999999999999999999999999985

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.52  E-value=2.1e-06  Score=73.33  Aligned_cols=107  Identities=13%  Similarity=0.065  Sum_probs=66.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhccc---CCcceEEEeccCCcccc------ccccccc-chhcHHHHHHHHHHcCC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAVMT------LPFAANI-DIRDTIRYKEVMKQFNL  135 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~---~~~~~~~i~~~d~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~l  135 (324)
                      ..++..++|+|++|+|||||++.|.+...   +..+.+.+.+.+.....      ..+...- ......++.+.+.... 
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-  108 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL-  108 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh-
Confidence            35677899999999999999999999876   55666666554432110      0111100 0000012222221100 


Q ss_pred             CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...  .......+|.|+++++.++.+...+++++|+|.|-
T Consensus       109 ~~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt  146 (202)
T cd03233         109 RCK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNST  146 (202)
T ss_pred             hhc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence            000  11233459999999999999999999999999884

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.51  E-value=5.7e-07  Score=75.62  Aligned_cols=107  Identities=17%  Similarity=0.283  Sum_probs=75.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccc-------------c---c---------hh
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN-------------I---D---------IR  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------~---~---------~~  121 (324)
                      ..+-+|.|+|.+|||||||+|.+.|...+.++.+.+.+.|..--.......             +   .         .|
T Consensus        30 ~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~R  109 (263)
T COG1101          30 AEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESR  109 (263)
T ss_pred             cCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence            356679999999999999999999999999999998877754221111100             0   0         00


Q ss_pred             -------------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeC
Q 020549          122 -------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT  173 (324)
Q Consensus       122 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDt  173 (324)
                                   -+..+.+-+...+++..--....+..+|.|++|.++.+.+....+++.|+|.
T Consensus       110 g~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE  174 (263)
T COG1101         110 GKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE  174 (263)
T ss_pred             CcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence                         0112233444555554434445666799999999999999999999999995

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.7e-06  Score=78.54  Aligned_cols=135  Identities=18%  Similarity=0.229  Sum_probs=78.9

Q ss_pred             ccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc
Q 020549           63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL  142 (324)
Q Consensus        63 ~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  142 (324)
                      .+...++-.|.++|-.|+||||.+-.|.......++.+..+--|....    + .   .+++..  .-...+..-.+...
T Consensus        95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa----g-A---fDQLkq--nA~k~~iP~ygsyt  164 (483)
T KOG0780|consen   95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA----G-A---FDQLKQ--NATKARVPFYGSYT  164 (483)
T ss_pred             ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc----c-h---HHHHHH--HhHhhCCeeEeccc
Confidence            334556778999999999999999999999888888877754443211    0 0   111100  00011111111000


Q ss_pred             c--cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh
Q 020549          143 T--SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT  215 (324)
Q Consensus       143 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~  215 (324)
                      .  +....+.++      -+....+++++|+||+|-|.-  ...+..++.+......+|-+|||+|++-+.....
T Consensus       165 e~dpv~ia~egv------~~fKke~fdvIIvDTSGRh~q--e~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  165 EADPVKIASEGV------DRFKKENFDVIIVDTSGRHKQ--EASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             ccchHHHHHHHH------HHHHhcCCcEEEEeCCCchhh--hHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            0  000011111      122256899999999996553  2345556666666677899999999988765544

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.51  E-value=1.5e-06  Score=85.24  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc---------cccccccccc---chhcH----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTLPFAANI---DIRDT----------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~---------~~~~~~~~~~---~~~~~----------  123 (324)
                      -+++.+++|+|++|+|||||++.|++...+..+.+.+.+.+..         +...+..+.+   .+++.          
T Consensus       358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~  437 (529)
T TIGR02868       358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATD  437 (529)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCH
Confidence            4578899999999999999999999998888777766554321         1111111100   11222          


Q ss_pred             HHHHHHHHHcCCCC-----CCcccc----cccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLGP-----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+.++++..++..     ..|.-+    .=..+|.|++|++..+++...+++++++|.|-
T Consensus       438 e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~T  498 (529)
T TIGR02868       438 EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT  498 (529)
T ss_pred             HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            22334455444421     012111    11238999999999999999999999999886

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.51  E-value=2.6e-06  Score=80.06  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=74.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC--cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ..+.+|+++|++|+||||++..|.+.....  ...+.++..|...    .+    ....  ...+.+.+++....     
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r----ig----alEQ--L~~~a~ilGvp~~~-----  253 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR----IG----GHEQ--LRIYGKLLGVSVRS-----  253 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc----hh----HHHH--HHHHHHHcCCceec-----
Confidence            456789999999999999999998753211  1223332222110    00    0111  12223333332111     


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                         ......  ...+.....+.+++++||+|....  .......+..........-.++|+++.........+      +
T Consensus       254 ---v~~~~d--l~~al~~l~~~d~VLIDTaGrsqr--d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~------~  320 (420)
T PRK14721        254 ---IKDIAD--LQLMLHELRGKHMVLIDTVGMSQR--DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV------I  320 (420)
T ss_pred             ---CCCHHH--HHHHHHHhcCCCEEEecCCCCCcc--hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH------H
Confidence               011111  112222345789999999996542  111222222221112245678889987554333222      1


Q ss_pred             HHHhhcCCCeEEEeeccccCCh
Q 020549          225 SILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ..+...+ .-=++++|.|-...
T Consensus       321 ~~f~~~~-~~~~I~TKlDEt~~  341 (420)
T PRK14721        321 SAYQGHG-IHGCIITKVDEAAS  341 (420)
T ss_pred             HHhcCCC-CCEEEEEeeeCCCC
Confidence            2222222 33678999997653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.51  E-value=7.4e-07  Score=76.81  Aligned_cols=108  Identities=14%  Similarity=0.112  Sum_probs=72.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccc----------cccch--h----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFA----------ANIDI--R----  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~----------~~~~~--~----  121 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...        ...+..          .++..  .    
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~  100 (213)
T TIGR01277        21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK  100 (213)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC
Confidence            35678899999999999999999999887766666654433210        000000          00000  0    


Q ss_pred             ----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 ----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ....+.++++.+++....  -.....+|.|+++++.++.+....++++++|.|-
T Consensus       101 ~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  156 (213)
T TIGR01277       101 LNAEQQEKVVDAAQQVGIADYL--DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF  156 (213)
T ss_pred             ccHHHHHHHHHHHHHcCcHHHh--hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                111345567777775322  2233469999999999999999999999999885

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.51  E-value=2.5e-06  Score=79.20  Aligned_cols=107  Identities=13%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----------cc---cccc----ccchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TL---PFAA----NIDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----------~~---~~~~----~~~~~~------  122 (324)
                      ..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+....           ..   +...    ...+.+      
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~  101 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGM  101 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhh
Confidence            46778999999999999999999998777666666544332100           00   0000    001111      


Q ss_pred             ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ...+.++++.+++....  -.....+|.|++|++.++++...+++++|+|.|-
T Consensus       102 ~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt  156 (352)
T PRK11144        102 AKSMVAQFDKIVALLGIEPLL--DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL  156 (352)
T ss_pred             hhhhHHHHHHHHHHcCCchhh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence                12345678888886422  2233469999999999999999999999999984

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.51  E-value=8.8e-07  Score=76.88  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------cccccccc----cchhcH------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------MTLPFAAN----IDIRDT------------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------~~~~~~~~----~~~~~~------------  123 (324)
                      -.++..++|+|++|+|||||++.|.+...+..+.+.+.+.+...      ...+....    ..+.+.            
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~  102 (223)
T TIGR03740        23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD  102 (223)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH
Confidence            35678899999999999999999999877666665554432110      00000000    011111            


Q ss_pred             HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ....++++.+++...  .......+|.|+++++..+.+...+++++++|.|-
T Consensus       103 ~~~~~~l~~~~l~~~--~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~  152 (223)
T TIGR03740       103 SRIDEVLNIVDLTNT--GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT  152 (223)
T ss_pred             HHHHHHHHHcCCcHH--HhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            133566777777542  12233469999999999999999999999999884

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.50  E-value=8.3e-07  Score=76.51  Aligned_cols=106  Identities=13%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------cccccccc----cchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAAN----IDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~----~~~~~------  122 (324)
                      .+ ..++|+|++|+|||||++.|.+...+..+.+.+.+.+...              ...+....    ..+.+      
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~  100 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGL  100 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHH
Confidence            45 7799999999999999999999877666665554432210              00000000    00111      


Q ss_pred             --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              ...+.++++.+++...  .-.....+|.|+++++.++.+...+++++++|.|-
T Consensus       101 ~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  159 (214)
T cd03297         101 KRKRNREDRISVDELLDLLGLDHL--LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF  159 (214)
T ss_pred             hhCCHHHHHHHHHHHHHHcCCHhH--hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                    1134566777777532  22334469999999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.50  E-value=7.5e-07  Score=77.51  Aligned_cols=108  Identities=18%  Similarity=0.142  Sum_probs=70.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc-----cCCcceEEEeccCCcccc------------cccc---------cccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT-----QSRNIRGYVMNLDPAVMT------------LPFA---------ANID  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~-----~~~~~~~~i~~~d~~~~~------------~~~~---------~~~~  119 (324)
                      -..+..++|+|++|+|||||++.|.+..     .+..+.+.+.+.+.....            .+..         .++.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~  102 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA  102 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHH
Confidence            3467889999999999999999999987     665565555443321000            0000         0000


Q ss_pred             h--h---------cHHHHHHHHHHcCCCCCCccccc--ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 I--R---------DTIRYKEVMKQFNLGPNGGILTS--LNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 ~--~---------~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .  +         ....+.++++.+++....  ...  ...+|.|++|++.++.+...+++++|+|.|-
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  169 (227)
T cd03260         103 YGLRLHGIKLKEELDERVEEALRKAALWDEV--KDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT  169 (227)
T ss_pred             hHHHhcCCCcHHHHHHHHHHHHHHcCCChHH--hccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            0  0         011234567777775321  111  2569999999999999999999999999884

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.50  E-value=2.9e-06  Score=74.29  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=69.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------cccc-ccc----ccchhc---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLP-FAA----NIDIRD---------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~-~~~----~~~~~~---------  122 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...         ...+ ...    ...+++         
T Consensus        44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~  123 (236)
T cd03267          44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY  123 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc
Confidence            35678899999999999999999999876665555543332100         0000 000    000011         


Q ss_pred             -------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ......+++.+++...  .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       124 ~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  181 (236)
T cd03267         124 DLPPARFKKRLDELSELLDLEEL--LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT  181 (236)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhH--hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                   0123455666666431  22234469999999999999999999999999885

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.6e-06  Score=82.90  Aligned_cols=111  Identities=18%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcHH--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDTI--------  124 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~~--------  124 (324)
                      -+++.+++++|++|+|||||++.|.|...+..+...+.+.+...-+          .+..+.+   .+++.+        
T Consensus       344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s  423 (559)
T COG4988         344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS  423 (559)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence            5677889999999999999999999998888777777655432211          1111111   122222        


Q ss_pred             --HHHHHHHHcCCCC----CCcccccc----cccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          125 --RYKEVMKQFNLGP----NGGILTSL----NLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       125 --~~~~~~~~~~l~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                        ...++++..++..    +.|.-+..    ..+|.|+.|++..+++...+.++.++|.|--
T Consensus       424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA  485 (559)
T COG4988         424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA  485 (559)
T ss_pred             HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence              2334444433322    12333222    2389999999999999999999999999863

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.49  E-value=9e-07  Score=77.69  Aligned_cols=107  Identities=13%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------cccccccc----cchhc--------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAAN----IDIRD--------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------~~~~~~~~----~~~~~--------  122 (324)
                      .++..++|+|++|+|||||++.|++...+..+.+.+.+.+...            ...+....    ..+.+        
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  104 (240)
T PRK09493         25 DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR  104 (240)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence            4677899999999999999999999877766666655433210            00000000    00000        


Q ss_pred             ---------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ---------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                               ...+.++++.+++....  ......+|.|+++++..+.+...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~  164 (240)
T PRK09493        105 VRGASKEEAEKQARELLAKVGLAERA--HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT  164 (240)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChHHH--hcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                     11234667777775421  2233469999999999999999999999999884

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.49  E-value=4.3e-06  Score=72.12  Aligned_cols=108  Identities=14%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------ccccccccc----cchhcH-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAAN----IDIRDT-----------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~~~~~~~~----~~~~~~-----------  123 (324)
                      -..+.+++|+|++|+|||||++.|++...+..+.+.+.+.+..       +...+....    ..+.+.           
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~  113 (214)
T PRK13543         34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR  113 (214)
T ss_pred             ECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCc
Confidence            3567789999999999999999999987766665555443211       000000000    011111           


Q ss_pred             --HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 --IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .....+++.+++...  .-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       114 ~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (214)
T PRK13543        114 AKQMPGSALAIVGLAGY--EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY  165 (214)
T ss_pred             HHHHHHHHHHHcCChhh--ccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence              122455666776532  22333469999999999999999999999999986

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=9.2e-07  Score=77.24  Aligned_cols=108  Identities=14%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cc----------cccccccch-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MT----------LPFAANIDI-------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~----------~~~~~~~~~-------  120 (324)
                      -..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+...        ..          .+...++..       
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~  101 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLK  101 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccC
Confidence            34677899999999999999999999877666655554432110        00          000000100       


Q ss_pred             ---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         .....+.++++.+++...  +-.....+|.|+++++..+.+...+++++|+|.|-
T Consensus       102 ~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~  157 (232)
T PRK10771        102 LNAAQREKLHAIARQMGIEDL--LARLPGQLSGGQRQRVALARCLVREQPILLLDEPF  157 (232)
T ss_pred             CCHHHHHHHHHHHHHcCcHHH--HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence               001124556777776532  22333469999999999999999999999999984

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=7.1e-06  Score=79.38  Aligned_cols=32  Identities=16%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~   97 (324)
                      .+...+|++.|..++||||++|+++....-.+
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~  137 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPS  137 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcc
Confidence            34677899999999999999999998865543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=3.3e-06  Score=75.89  Aligned_cols=108  Identities=10%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-------------ccc-----c---ccccch--h-
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLP-----F---AANIDI--R-  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-------------~~~-----~---~~~~~~--~-  121 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+....             ..+     .   ..++..  + 
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~  109 (279)
T PRK13650         30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN  109 (279)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHh
Confidence            356788999999999999999999998877777666655432110             000     0   000000  0 


Q ss_pred             -------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ....+.++++.+++.....  .....+|.|++|++.++.+....++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt  168 (279)
T PRK13650        110 KGIPHEEMKERVNEALELVGMQDFKE--REPARLSGGQKQRVAIAGAVAMRPKIIILDEAT  168 (279)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHhHhh--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence                   0123456778888764221  223469999999999999999999999999885

>TIGR00092 GTP-binding protein YchF

Probab=98.47  E-value=4.8e-07  Score=83.30  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+++|+|.||+|||||+|+|++.....            ..++|++|.                  .++-|++.-.+   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~------------~a~ypftTi------------------~p~~g~v~v~d---   49 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNE------------AANPPFTTI------------------EPNAGVVNPSD---   49 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccc------------cCCCCCCCC------------------CCceeEEEech---
Confidence            679999999999999999999886511            344455531                  11222211000   


Q ss_pred             hHHHHHHHHHHHH-hCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCC
Q 020549          150 TKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTP  208 (324)
Q Consensus       150 ~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~  208 (324)
                      ....++....... .....+.|+|.||+..-...+ .++..+...++  .+|++++||++.
T Consensus        50 ~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir--~~d~l~hVvr~f  108 (368)
T TIGR00092        50 PRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIR--EVDIIQHVVRCF  108 (368)
T ss_pred             hHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHH--hCCEEEEEEeCC
Confidence            0000000000000 113468899999987643222 24555555554  368999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=3.2e-06  Score=75.65  Aligned_cols=108  Identities=10%  Similarity=0.066  Sum_probs=71.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc-----ccchhcH-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA-----NIDIRDT-------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~-----~~~~~~~-------  123 (324)
                      -..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...          ...+...     ...+.+.       
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~  111 (271)
T PRK13632         32 INEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLEN  111 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHH
Confidence            35677899999999999999999999977766666554433211          0000000     0001111       


Q ss_pred             ---------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 ---------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                               ..+.++++.+++....  -.....+|.|+++++.++.+....++++|+|.|-
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~  170 (271)
T PRK13632        112 KKVPPKKMKDIIDDLAKKVGMEDYL--DKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST  170 (271)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHHHh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                     1234556677765321  1223469999999999999999999999999985

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.47  E-value=1.2e-06  Score=77.45  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec--------cCCcccc-ccccc--ccch---hcHHHHHHHHH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN--------LDPAVMT-LPFAA--NIDI---RDTIRYKEVMK  131 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~--------~d~~~~~-~~~~~--~~~~---~~~~~~~~~~~  131 (324)
                      -..+.+++|+|++|+|||||++.|++...+..+.+.+.+        .++.... .+.+.  .+..   .....+.++++
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  106 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK  106 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHH
Confidence            356788999999999999999999998766554443321        1111100 00000  0000   01123456677


Q ss_pred             HcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .+++...  .-.....+|.|+++++..+.+....++++|+|.|-
T Consensus       107 ~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  148 (251)
T PRK09544        107 RVQAGHL--IDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT  148 (251)
T ss_pred             HcCChHH--HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            7777532  12234469999999999999999999999999985

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=8.3e-07  Score=78.03  Aligned_cols=108  Identities=13%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccccc---chh------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DIR------------  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~---~~~------------  121 (324)
                      ..+..++|+|++|+|||||++.|++...+..+.+.+.+.+...          ...+....+   .+.            
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~  106 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGE  106 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCc
Confidence            4677899999999999999999999877766666655433210          000000000   000            


Q ss_pred             cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ....+.++++.+++... -.-.....+|.|+++++.++.+...+++++|+|.|-
T Consensus       107 ~~~~~~~~l~~~~l~~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  159 (241)
T PRK14250        107 KNVDVEYYLSIVGLNKE-YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT  159 (241)
T ss_pred             HHHHHHHHHHHcCCCHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            01234566777777421 011233469999999999999999999999999985

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.47  E-value=1.1e-06  Score=73.52  Aligned_cols=101  Identities=16%  Similarity=0.152  Sum_probs=62.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc-c
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT-S  144 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~  144 (324)
                      -..+..++|+|++|+|||||++.|.+...+..+.+.+.+.+...........+..        +.....+.+ ..+.. -
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--------~~q~~~~~~-~tv~~~i   95 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV--------LNQRPYLFD-TTLRNNL   95 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE--------EccCCeeec-ccHHHhh
Confidence            3567789999999999999999999998777666665443221000000000000        000000000 00000 0


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+|.|+++++..+++...+++++++|.|-
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~  126 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPT  126 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            3459999999999999999999999999985

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.47  E-value=3.9e-06  Score=75.03  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------------cccccccc----cchhcH-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFAAN----IDIRDT-----  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------------~~~~~~~~----~~~~~~-----  123 (324)
                      ...+..++|+|++|+|||||++.|++...+..+.+.+.+.+...             ...+....    ..+.+.     
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~  109 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL  109 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence            35677899999999999999999999877666665554432110             00000000    001111     


Q ss_pred             ------------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 ------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                  ..+.++++.+++...  .-.....+|.|+++++.++.+....++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  171 (269)
T PRK11831        110 REHTQLPAPLLHSTVMMKLEAVGLRGA--AKLMPSELSGGMARRAALARAIALEPDLIMFDEPF  171 (269)
T ss_pred             HHccCCCHHHHHHHHHHHHHHcCChhh--hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                        122345677777532  22234569999999999999999999999999985

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=4.1e-06  Score=75.23  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=73.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc-----ccchhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA-----NIDIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~-----~~~~~~--------  122 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+...          ...+...     ...+.+        
T Consensus        27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~  106 (277)
T PRK13652         27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN  106 (277)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHH
Confidence            35678899999999999999999999887777766665443210          0000000     000010        


Q ss_pred             --------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              ...+.++++.+++....  -.....+|.|+++++..+.+....++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt  165 (277)
T PRK13652        107 LGLDEETVAHRVSSALHMLGLEELR--DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT  165 (277)
T ss_pred             cCCCHHHHHHHHHHHHHHCCChhHh--cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                    11245667777775422  2233469999999999999999999999999884

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.47  E-value=1.4e-06  Score=76.97  Aligned_cols=108  Identities=16%  Similarity=0.176  Sum_probs=70.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------------cccccccc----cchhcH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAAN----IDIRDT  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------------~~~~~~~~----~~~~~~  123 (324)
                      -.++..++|+|++|+|||||++.|++...+..+.+.+.+.+...                  ...+....    ..+.+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~  105 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLEN  105 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHH
Confidence            35677899999999999999999999876665555543322110                  00000000    001110


Q ss_pred             -----------------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -----------------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                       ..+.++++.+++....  -.....+|.|+++++.++.+...+++++|+|.|-
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt  172 (250)
T PRK11264        106 IIEGPVIVKGEPKEEATARARELLAKVGLAGKE--TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT  172 (250)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh--hCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                             1234567777775321  2233469999999999999999999999999985

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.2e-06  Score=79.00  Aligned_cols=108  Identities=13%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccc---cc--chhc----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAA---NI--DIRD----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~---~~--~~~~----  122 (324)
                      ...+..++|+|++|+|||||++.|++...+..+.+.+.+.+...              ...+..+   -+  .+.+    
T Consensus        30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~  109 (287)
T PRK13641         30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF  109 (287)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence            35678899999999999999999999987777766665543210              0001000   00  0011    


Q ss_pred             ------------HHHHHHHHHHcCCCC-CCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------------TIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------------~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                  ...+.++++.+++.. ..  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt  173 (287)
T PRK13641        110 GPKNFGFSEDEAKEKALKWLKKVGLSEDLI--SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA  173 (287)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCChhHh--hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence                        113456677777742 11  1223459999999999999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
1yr6_A	262	Pab0955 Crystal Structure : A Gtpase In Apo Form Fr		5e-20

>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From Pyrococcus Abyssi Length = 262

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 8/202 (3%)
Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           +I++ VG AGSGKTT       + +      YV NLD  V  LP+  +ID+R+ +  +E+
Sbjct: 15  MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEI 73
Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189
           M++   GPNG I+ S +    KF+E ++ I R     DYVL+DTPGQ+E F +   G  +
Sbjct: 74  MRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 132
Query: 190 TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV---AQH 246
            E     +P VV Y+ D      P  +     +A  I  +     + A NK D+    + 
Sbjct: 133 MENLP--YPLVV-YISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 189
Query: 247 EFALEWMQDFEVFQAAISSDHS 268
           E   ++ +D +   A +  D S
Sbjct: 190 ERHRKYFEDIDYLTARLKLDPS 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	7e-73
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	7e-05
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	1e-04
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	2e-04
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	3e-04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	3e-04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	7e-04
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	9e-04
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	9e-04

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score =  224 bits (573), Expect = 7e-73
 Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 8/256 (3%)

Query: 58  AGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAAN 117
                 +     +I++ VG AGSGKTT       + +  N +   +NLD  V  LP+  +
Sbjct: 3   GSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKELPYEPS 61

Query: 118 IDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177
           ID+R+ +  +E+M++   GPNG I+ S +    KF+E ++ I R     DYVL+DTPGQ+
Sbjct: 62  IDVREFVTVEEIMRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQM 120

Query: 178 EIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237
           E F +   G  + E        +V Y+ D      P  +     +A  I  +     + A
Sbjct: 121 ETFLFHEFGVRLMENLPYP---LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA 177

Query: 238 FNKTDVA---QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS 294
            NK D+    + E   ++ +D +   A +  D S    +   +   + E    ++ + +S
Sbjct: 178 LNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLS 237

Query: 295 SVSGAGIEAYFKAVEE 310
           + +  G E       E
Sbjct: 238 AKTREGFEDLETLAYE 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 54/390 (13%), Positives = 112/390 (28%), Gaps = 147/390 (37%)

Query: 10  LNSKPTEESGHTQMESEESSALKANDKE---KEEIT--ESMDKLHIEESSSGLAGSSSIN 64
           + ++  + S  T+M  E+   L  ND +   K  ++  +   KL        L       
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQPYLKLR-----QAL------- 144

Query: 65  FKRKPVIIIVV-GMAGSGKT---------------------------------------T 84
            + +P   +++ G+ GSGKT                                        
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 85  FMHRLVCHTQSR-----NIRGYVMNLDPAVMTL----PFAANIDIRDTIRYKEVMKQFNL 135
            ++++  +  SR     NI+  + ++   +  L    P+   + +   ++  +    FNL
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI------FTWSASGAII 189
                      L TT+F +V           D++   T   I +       T     ++ 
Sbjct: 265 S-------CKILLTTRFKQVT----------DFLSAATTTHISLDHHSMTLTPDEVKSL- 306

Query: 190 TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ--HE 247
                           D PR               +       P  L+     +A+   +
Sbjct: 307 ---LLKYLDCRPQ---DLPRE------------VLTT-----NPRRLSI----IAESIRD 339

Query: 248 FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALD--------EFYKNL----KSVGVSS 295
               W  D           H     LT  +  +L+        + +  L     S  + +
Sbjct: 340 GLATW--DN--------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 296 VSGAGIEAY-FKAVEESAQEFM-ETYKYCL 323
           +    +    F  ++      + + +KY L
Sbjct: 390 IL---LSLIWFDVIKSDVMVVVNKLHKYSL 416

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 65/197 (32%)

Query: 61  SSINFKRKPVI--IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI 118
           S+INF  + +   I+  G   SGKTT +  +         +G +++L             
Sbjct: 4   STINFANREINFKIVYYGPGLSGKTTNLKWI-YSKVPEGRKGEMVSLATEDER------- 55

Query: 119 DIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178
               T+ +       ++G   G  T  +L+                         PGQ+ 
Sbjct: 56  ----TLFFD--FLPLDIGEVKGFKTRFHLY-----------------------TVPGQVF 86

Query: 179 I-FTWS-----ASGAIITEAFASTFPTVVTYVVDTPR-----SANPMTFMSNMLYACSIL 227
              +         G +              +V D+       +A  M  M   L    + 
Sbjct: 87  YNASRKLILRGVDGIV--------------FVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 228 YKTRLPLVLAFNKTDVA 244
               +P+V+  NK D+ 
Sbjct: 133 LD-DVPIVIQVNKRDLP 148

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Length = 171

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 69  PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKE 128
            +I+ +VG + SGKTT + R++   + R +R  V+          F  + + +D+ +   
Sbjct: 2   SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG---DFEIDKEGKDSWKIYN 58

Query: 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173
                 +     +     +   + +++  + ER     D V+ + 
Sbjct: 59  SGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEG 103

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 18/108 (16%), Positives = 39/108 (36%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRY 126
              ++II+ G+ G GK+TF   L       NI   V+  D    + P           + 
Sbjct: 2   GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 61

Query: 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174
              +    L     I+   N + +   ++I++ ++   +   + +   
Sbjct: 62  TYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS 109

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 49 HIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLV 90
          H   S   L   +      +P +I V G   SGK+T   +++
Sbjct: 5  HHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIM 46

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93
           P +IIV G   +GKTT    L    
Sbjct: 4  TPALIIVTGHPATGKTTLSQALATGL 29

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 66 KRKPVIIIVVGMAGSGKTTFMHRLV 90
            KP +I + G   SGKTT    L 
Sbjct: 3  APKPFVIGIAGGTASGKTTLAQALA 27

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Length = 443

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)

Query: 38  KEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97
            EE+T+ +              +  I  K KP I+++VG+ GSGKTT + +L  + Q R 
Sbjct: 80  YEELTKFLGT-----------EAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRG 128

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 66 KRKPVIIIVVGMAGSGKTTFMHRLV 90
            +P +I V G   SGK++   ++V
Sbjct: 19 GGEPFLIGVSGGTASGKSSVCAKIV 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.91
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.87
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.85
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.85
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.85
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.85
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.85
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.85
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.85
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.84
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.84
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.84
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.84
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.84
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.84
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.84
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.84
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.84
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.84
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.84
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.84
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.84
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.84
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.84
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.84
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.84
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.84
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.83
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.83
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.83
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.83
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.83
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.83
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.83
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.83
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.83
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.83
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.83
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.83
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.83
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.83
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.83
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.83
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.83
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.83
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.83
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.83
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.83
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.83
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.83
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.83
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.83
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.83
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.83
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.83
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.83
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.83
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.83
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.83
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.83
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.82
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.82
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.82
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.82
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.82
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.82
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.82
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.82
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.82
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.82
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.82
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.82
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.82
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.82
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.82
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.82
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.82
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.82
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.82
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.81
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.81
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.81
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.81
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.81
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.81
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.81
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.8
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.8
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.68
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.8
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.8
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.8
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.79
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.79
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.79
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.79
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.79
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.78
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.78
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.77
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.77
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.77
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.77
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.77
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.77
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.76
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.76
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.76
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.76
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.75
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.75
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.75
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.75
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.75
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.75
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.75
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.75
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.75
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.75
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.74
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.74
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.73
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.73
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.72
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.72
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.72
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.71
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.71
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.71
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.7
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.7
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.69
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.69
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.69
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.69
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.68
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.67
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.67
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.66
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.66
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.66
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.66
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.66
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.65
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.65
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.64
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.64
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.61
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.6
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.58
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.56
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.51
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.46
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.45
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.42
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.42
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.4
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.37
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.3
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.27
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.22
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.2
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.17
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.15
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.15
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.15
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.14
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.13
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.11
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.08
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.07
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.9
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.89
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.89
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.88
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.88
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.87
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.87
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.85
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.84
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.84
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.83
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.83
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.82
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.82
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.82
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.81
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.79
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.78
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.78
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.78
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.78
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.75
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.75
2xxa_A	433	Signal recognition particle protein; protein trans	98.74
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.74
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.73
1g6h_A	257	High-affinity branched-chain amino acid transport	98.73
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.73
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.72
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.71
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.7
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.7
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.7
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.7
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.69
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.69
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.68
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.68
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.68
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.66
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.66
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.66
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.62
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.62
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.61
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.6
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.6
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.58
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.57
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.55
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.54
2og2_A	359	Putative signal recognition particle receptor; nuc	98.52
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.52
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.5
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.49
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.45
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.4
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.39
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.36
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.36
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.35
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.34
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.32
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.3
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.28
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.26
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.26
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.24
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	98.24
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.23
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.2
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.15
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.13
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.1
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.02
3end_A	307	Light-independent protochlorophyllide reductase ir	98.01
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	98.01
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.98
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.95
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.89
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.89
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.88
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	97.88
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.84
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	97.83
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.83
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	97.8
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.77
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.77
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.75
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	97.75
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	97.74
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.7
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.69
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.69
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.68
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	97.66
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.65
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	97.65
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	97.63
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.61
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.61
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.61
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.6
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.57
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.52
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.47
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.44
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.43
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	97.42
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.42
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.37
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.37
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.36
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.35
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.35
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	97.35
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.32
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.31
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.27
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.26
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.25
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.25
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.25
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.24
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.23
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.23
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	97.23
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.22
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.21
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.2
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.18
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.17
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.16
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.15
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.07
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.07
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.07
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.05
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.05
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.05
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.04
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	97.04
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.03
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.01
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.01
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.99
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.99
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.99
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	96.97
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.91
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.89
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	96.87
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.85
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.85
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	96.83
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	96.81
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.8
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.8
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.79
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.79
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.78
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.78
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	96.76
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.75
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.73
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.72
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.72
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.71
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.7
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.69
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.69
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.68
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.68
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.67
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.66
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.65
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.65
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	96.64
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.64
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.61
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.61
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.61
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.61
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.6
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.59
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	96.59
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.59
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.58
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.57
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.55
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.54
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.53
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.53
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.52
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.51
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.49
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.49
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.49
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.48
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.48
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.48
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.47
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.46
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.45
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.45
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.44
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.43
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.43
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.43
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.4
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.38
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.36
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.36
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.35
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.35
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.34
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.3
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.3
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.27
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.23
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	96.22
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.21
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.21
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.18
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.18
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.18
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.16
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.15
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.15
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.13
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.12
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.12
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.12
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.12
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.1
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.1
1via_A	175	Shikimate kinase; structural genomics, transferase	96.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.06
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.02
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.02
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.01
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	96.01
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.99
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	95.98
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.98
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.96
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.96
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.95
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.91
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.9
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.89
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.89
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.82
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.81
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.79
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.79
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	95.77
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.75
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.7
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.7
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.69
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.68

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=1.6e-24  Score=196.09  Aligned_cols=178  Identities=17%  Similarity=0.218  Sum_probs=120.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...+.+|+|+|.+|||||||+|+|++..+..            ++..+.++...+                  .++..  
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i------------~s~~~~tT~~~~------------------~~~~~--   54 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI------------ISPKAGTTRMRV------------------LGVKN--   54 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCCCSCE------------------EEEEE--
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccc------------cCCCCCceeeEE------------------EEEEe--
Confidence            3456789999999999999999999987653            233333331100                  01111  


Q ss_pred             cccChHHHHHHHHHHHHhC-CCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                                       .. +.+++||||||++++..+...+..+......  ..+|++++|+|+..+....+..    .
T Consensus        55 -----------------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~----~  113 (308)
T 3iev_A           55 -----------------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE----I  113 (308)
T ss_dssp             -----------------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH----H
T ss_pred             -----------------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH----H
Confidence                             22 5689999999998764224444444443332  3479999999998876554421    0


Q ss_pred             HHHHHhhcCCCeEEEeeccccC-ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC
Q 020549          223 ACSILYKTRLPLVLAFNKTDVA-QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG  300 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g  300 (324)
                      .+..+...++|+++|+||+|+. +........+.+.                         ..+ ...+++++||++|.|
T Consensus       114 ~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~-------------------------~~~~~~~~i~~vSA~~g~g  168 (308)
T 3iev_A          114 YQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIH-------------------------KKHPELTEIVPISALKGAN  168 (308)
T ss_dssp             HHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHH-------------------------HHCTTCCCEEECBTTTTBS
T ss_pred             HHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHH-------------------------HhccCCCeEEEEeCCCCCC
Confidence            1244555789999999999998 5544333333332                         112 457899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhc
Q 020549          301 IEAYFKAVEESAQEFMETYKY  321 (324)
Q Consensus       301 v~~l~~~i~~~~~~~~~~~~~  321 (324)
                      +++|++.|.+.+++.++.|..
T Consensus       169 v~~L~~~l~~~l~~~~~~~~~  189 (308)
T 3iev_A          169 LDELVKTILKYLPEGEPLFPE  189 (308)
T ss_dssp             HHHHHHHHHHHSCBCCCSSCT
T ss_pred             HHHHHHHHHHhCccCCCCCCc
Confidence            999999999999877766654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.91  E-value=2.6e-23  Score=183.49  Aligned_cols=244  Identities=27%  Similarity=0.414  Sum_probs=146.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+...++++|.+|||||||+++|..... .++.+.++..|+.....++....++++.....+++.. ++.++++++++.
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   88 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESY   88 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecH
Confidence            45678899999999999999999998877 7788999998887655544444444333334444433 445555554432


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                      +.+.....+....+......++++||||||+.++......+..+...+  .. +++|+++|+.......+++........
T Consensus        89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~  165 (262)
T 1yrb_A           89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALL  165 (262)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence            111111122222222223357999999999987643333333333333  34 899999998776665555433222222


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHH---HHHHhHHHHHHHHhcCcc--chhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFAL---EWMQDFEVFQAAISSDHS--YTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                      .....++|+++|+||+|+.......   ++++.+..+.+.+...+.  .+..+  .+...+..+....+++++||++|.|
T Consensus       166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~g  243 (262)
T 1yrb_A          166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREG  243 (262)
T ss_dssp             HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred             HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCccc
Confidence            3345679999999999998765332   222222222222211100  01111  2222233444446899999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQEFM  316 (324)
Q Consensus       301 v~~l~~~i~~~~~~~~  316 (324)
                      +++|++.|.+.++.++
T Consensus       244 i~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          244 FEDLETLAYEHYCTCG  259 (262)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999999887654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.90  E-value=9.3e-24  Score=181.35  Aligned_cols=165  Identities=17%  Similarity=0.225  Sum_probs=98.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+|+|.+|||||||+++|+...|...+.+++.     .........++                            
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig-----~d~~~k~~~~~----------------------------   58 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG-----IDFLSKTMYLE----------------------------   58 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC---------------CEEEEEECS----------------------------
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc-----eEEEEEEEEec----------------------------
Confidence            457999999999999999999999888765544331     10000000000                            


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     ...+.+.||||||++++..      ....+++.+.+.+++|.++...++.....|...+   ...
T Consensus        59 ---------------~~~v~l~iwDtaGqe~~~~------l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i---~~~  114 (216)
T 4dkx_A           59 ---------------DRTIRLQLWDTAGLERFRS------LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV---RTE  114 (216)
T ss_dssp             ---------------SCEEEEEEECCSCTTTCGG------GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH---HHH
T ss_pred             ---------------ceEEEEEEEECCCchhhhh------HHHHHhccccEEEEEeecchhHHHHHHHHHHHHH---HHh
Confidence                           2245788999999998722      1222333333334444444445555555554333   344


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+|||+||+|+.+...+.  .++...++              ++       +  ++++++|||++|.||+++|..
T Consensus       115 ~~~~~piilVgNK~Dl~~~r~V~--~~e~~~~a--------------~~-------~--~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A          115 RGSDVIIMLVGNKTDLADKRQVS--IEEGERKA--------------KE-------L--NVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             HTTSSEEEEEEECTTCGGGCCSC--HHHHHHHH--------------HH-------H--TCEEEEEBTTTTBSHHHHHHH
T ss_pred             cCCCCeEEEEeeccchHhcCccc--HHHHhhHH--------------HH-------h--CCeeEEEeCCCCcCHHHHHHH
Confidence            45689999999999987643210  01111111              11       1  467999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |++.+..
T Consensus       170 i~~~i~~  176 (216)
T 4dkx_A          170 VAAALPG  176 (216)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHh
Confidence            9987753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=1.5e-23  Score=188.84  Aligned_cols=170  Identities=22%  Similarity=0.274  Sum_probs=113.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+|+|++|||||||+|+|++..+..            ++..+.++    ++.+              .+++.    
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i------------vs~~~~tT----r~~i--------------~~i~~----   51 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP------------ISPRPQTT----RKRL--------------RGILT----   51 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCC----CSCE--------------EEEEE----
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceee------------ecCCCCce----eEEE--------------EEEEE----
Confidence            34579999999999999999999987653            23333333    1100              01111    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                     ..+.+++||||||++++  .......+......  ..+|+++||+|+.+++...+.|.     +.
T Consensus        52 ---------------~~~~~l~l~DTpG~~~~--~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i-----~~  109 (301)
T 1wf3_A           52 ---------------EGRRQIVFVDTPGLHKP--MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELV-----AR  109 (301)
T ss_dssp             ---------------ETTEEEEEEECCCCCCC--CSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHH-----HH
T ss_pred             ---------------eCCcEEEEecCccccch--hhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHH-----HH
Confidence                           23568999999999875  33333333333322  35799999999988776554331     12


Q ss_pred             HHhhc--CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          226 ILYKT--RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      .+...  +.|+++|+||+|+......  ..+...                         .+..+.+++++||++|.|+++
T Consensus       110 ~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~-------------------------~~~~~~~~~~iSA~~g~gv~~  162 (301)
T 1wf3_A          110 ALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYH-------------------------ELLPEAEPRMLSALDERQVAE  162 (301)
T ss_dssp             HHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHH-------------------------HTSTTSEEEECCTTCHHHHHH
T ss_pred             HHHhhcCCCCEEEEEECcccCCchHH--HHHHHH-------------------------HhcCcCcEEEEeCCCCCCHHH
Confidence            33444  7999999999999875430  111111                         122346799999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 020549          304 YFKAVEESAQEFMETYK  320 (324)
Q Consensus       304 l~~~i~~~~~~~~~~~~  320 (324)
                      |++.|.+.+++.++.|.
T Consensus       163 l~~~l~~~l~~~~~~y~  179 (301)
T 1wf3_A          163 LKADLLALMPEGPFFYP  179 (301)
T ss_dssp             HHHHHHTTCCBCCCSSC
T ss_pred             HHHHHHHhcccCCCCCC
Confidence            99999998877666554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.87  E-value=1.3e-21  Score=168.11  Aligned_cols=175  Identities=14%  Similarity=0.085  Sum_probs=109.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|.+|||||||+|+|++..+..           .+...++++ .+..                    ...  
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-----------~~~~~~~~t-~~~~--------------------~~~--   72 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-----------FASKTPGRT-QHIN--------------------YFS--   72 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-----------CTTCCCCSC-CCEE--------------------EEE--
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-----------eecCCCCcc-cceE--------------------EEE--
Confidence            456789999999999999999999875211           012222221 0000                    000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh----hhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----ASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                       +.            ...+..+.||||||+.+.....    .....+..++.. ..+|+++||+|+.+++.....     
T Consensus        73 -~~------------~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----  134 (223)
T 4dhe_A           73 -VG------------PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDR-----  134 (223)
T ss_dssp             -ES------------CTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-----
T ss_pred             -ec------------CCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH-----
Confidence             00            0225789999999975531111    112223333433 335899999999887654432     


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-----hccCceeeeccc
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-----YKNLKSVGVSSV  296 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~iv~vSA~  296 (324)
                      ..+..+...++|+++|+||+|+............+.....                     .+     ....+++++||+
T Consensus       135 ~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~---------------------~~~~~~~~~~~~~~~~SA~  193 (223)
T 4dhe_A          135 RMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLD---------------------AYRDAGYAGKLTVQLFSAL  193 (223)
T ss_dssp             HHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH---------------------HHHHHTCCSCEEEEEEBTT
T ss_pred             HHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHH---------------------hhhhcccCCCCeEEEeecC
Confidence            1224455578999999999999987654333333221111                     11     245789999999


Q ss_pred             cCCChHHHHHHHHHHHHH
Q 020549          297 SGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       297 ~g~gv~~l~~~i~~~~~~  314 (324)
                      +|.||++|++.|.+.++.
T Consensus       194 ~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          194 KRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             TTBSHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHhcCc
Confidence            999999999999998864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.87  E-value=6.6e-21  Score=159.77  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=105.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++.....            ....++.+ .+.                    ...   
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~t-~~~--------------------~~~---   64 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------VSKTPGKT-RSI--------------------NFY---   64 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------CCSSCCCC-CCE--------------------EEE---
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------ccCCCCCc-cCe--------------------EEE---
Confidence            456789999999999999999999876332            11111111 000                    000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                      ..+.++.||||||+.....    ..........++.. ..+|++++|+|+..........    
T Consensus        65 ----------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~----  124 (195)
T 3pqc_A           65 ----------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM----  124 (195)
T ss_dssp             ----------------EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH----
T ss_pred             ----------------EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH----
Confidence                            1145789999999543210    00111122223333 2358999999987765443321    


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                       ....+...+.|+++|+||+|+.+........+....+.                      ......+++++||++|.||
T Consensus       125 -~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gv  181 (195)
T 3pqc_A          125 -MVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVF----------------------SKYGEYTIIPTSSVTGEGI  181 (195)
T ss_dssp             -HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH----------------------HSSCCSCEEECCTTTCTTH
T ss_pred             -HHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHH----------------------hhcCCCceEEEecCCCCCH
Confidence             12344556899999999999987654433333333211                      1123468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQE  314 (324)
Q Consensus       302 ~~l~~~i~~~~~~  314 (324)
                      +++|+.|.+.+++
T Consensus       182 ~~l~~~l~~~l~~  194 (195)
T 3pqc_A          182 SELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.87  E-value=9.7e-22  Score=161.35  Aligned_cols=159  Identities=23%  Similarity=0.279  Sum_probs=95.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+..+.             ++..+ ++..                 .+.+.      
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~-------------~~~~t-~~~~-----------------~~~~~------   46 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGN-------------WPGVT-VEKK-----------------EGEFE------   46 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC------------------C-CCCC-----------------EEEEE------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccC-------------CCCcc-eeee-----------------EEEEE------
Confidence            67999999999999999999987553221             11111 0000                 00000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHH-HHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII-TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                   ..+..+.+|||||+.++.... ....+ ..+++...+|++++++|+.... ....|      +..+.
T Consensus        47 -------------~~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~------~~~~~  105 (165)
T 2wji_A           47 -------------YNGEKFKVVDLPGVYSLTANS-IDEIIARDYIINEKPDLVVNIVDATALE-RNLYL------TLQLM  105 (165)
T ss_dssp             -------------ETTEEEEEEECCCCSCSSSSS-HHHHHHHHHHHHHCCSEEEEEEETTCHH-HHHHH------HHHHH
T ss_pred             -------------ECCcEEEEEECCCcccCCCcc-hhHHHHHHHHhcCCCCEEEEEecCCchh-HhHHH------HHHHH
Confidence                         124578999999998762211 11122 2233324579999999986521 11112      12333


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+.......   .....+.              +       . . +.+++++||++|.|++++|+.|
T Consensus       106 ~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~--------------~-------~-~-~~~~~~~SA~~~~~v~~l~~~l  159 (165)
T 2wji_A          106 EMGANLLLALNKMDLAKSLGIE---IDVDKLE--------------K-------I-L-GVKVVPLSAAKKMGIEELKKAI  159 (165)
T ss_dssp             HTTCCEEEEEECHHHHHHTTCC---CCHHHHH--------------H-------H-H-TSCEEECBGGGTBSHHHHHHHH
T ss_pred             hcCCCEEEEEEchHhccccChh---hHHHHHH--------------H-------H-h-CCCEEEEEcCCCCCHHHHHHHH
Confidence            4589999999999986432110   0111111              1       1 1 3689999999999999999999


Q ss_pred             HHHH
Q 020549          309 EESA  312 (324)
Q Consensus       309 ~~~~  312 (324)
                      .+.+
T Consensus       160 ~~~~  163 (165)
T 2wji_A          160 SIAV  163 (165)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=4.7e-22  Score=179.28  Aligned_cols=171  Identities=26%  Similarity=0.288  Sum_probs=108.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+|+|++|||||||+|+|++..+..            ++..+.++    +.++              .|++.    
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i------------~s~~~~tT----r~~~--------------~gi~~----   52 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI------------TSRKAQTT----RHRI--------------VGIHT----   52 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEE------------CCCCSSCC----SSCE--------------EEEEE----
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccc------------cCCCCCcc----eeeE--------------EEEEE----
Confidence            34579999999999999999999875431            22222222    1100              02221    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCc-chhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                     ....++.||||||++ ++  +......+......  ..+|++++|+|+.. +...+.+     .+
T Consensus        53 ---------------~~~~~i~~iDTpG~~~~~--~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~  109 (301)
T 1ega_A           53 ---------------EGAYQAIYVDTPGLHMEE--KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VL  109 (301)
T ss_dssp             ---------------ETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HH
T ss_pred             ---------------ECCeeEEEEECcCCCccc--hhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HH
Confidence                           235678999999987 43  22222222221122  23699999999977 6655533     12


Q ss_pred             HHHhhcCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      ..+...+.|+++|+||+|+.. .....+....+.                         +.+...+++++||++|.|+++
T Consensus       110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~-------------------------~~~~~~~~i~iSA~~g~~v~~  164 (301)
T 1ega_A          110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLA-------------------------SQMNFLDIVPISAETGLNVDT  164 (301)
T ss_dssp             HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHH-------------------------TTSCCSEEEECCTTTTTTHHH
T ss_pred             HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHH-------------------------HhcCcCceEEEECCCCCCHHH
Confidence            344556899999999999987 332222222111                         112334799999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 020549          304 YFKAVEESAQEFMETYK  320 (324)
Q Consensus       304 l~~~i~~~~~~~~~~~~  320 (324)
                      |++.|...+++.++.|.
T Consensus       165 l~~~i~~~l~~~~~~~~  181 (301)
T 1ega_A          165 IAAIVRKHLPEATHHFP  181 (301)
T ss_dssp             HHHHHHTTCCBCCCSSC
T ss_pred             HHHHHHHhCCcCCCCCC
Confidence            99999988876655553

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.85  E-value=5.4e-21  Score=158.65  Aligned_cols=163  Identities=18%  Similarity=0.149  Sum_probs=92.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+++|++..+...+.+++..        .+..                       .+..   
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~--------~~~~-----------------------~~~~---   51 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD--------NFSA-----------------------NVVV---   51 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------CBC-----------------------CCC----
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeee--------eEEE-----------------------EEEE---
Confidence            45688999999999999999999987665433222100        0000                       0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chh-HHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~-~~~~~~~~  223 (324)
                                     ......+.||||||+.++..  ...    ..  -..+|++++|+|......  ... .|...+  
T Consensus        52 ---------------~~~~~~~~i~Dt~G~~~~~~--~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--  106 (182)
T 3bwd_D           52 ---------------NGATVNLGLWDTAGQEDYNR--LRP----LS--YRGADVFILAFSLISKASYENVSKKWIPEL--  106 (182)
T ss_dssp             ---------------------CEEECCCC-CTTTT--TGG----GG--GTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred             ---------------CCEEEEEEEEECCCChhhhh--hHH----hh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence                           02245778999999887621  111    01  134689999999865321  111 232222  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHH--------HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecc
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEW--------MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS  295 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA  295 (324)
                       ... ..++|+++|+||+|+.+.......        .++..              .++        ......+++++||
T Consensus       107 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~--------------~~~--------~~~~~~~~~~~Sa  162 (182)
T 3bwd_D          107 -KHY-APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE--------------ELK--------KLIGAPAYIECSS  162 (182)
T ss_dssp             -HHH-CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH--------------HHH--------HHHTCSEEEECCT
T ss_pred             -HHh-CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH--------------HHH--------HHcCCCEEEEEEC
Confidence             221 137999999999999765422100        00011              111        1123348999999


Q ss_pred             ccCCChHHHHHHHHHHH
Q 020549          296 VSGAGIEAYFKAVEESA  312 (324)
Q Consensus       296 ~~g~gv~~l~~~i~~~~  312 (324)
                      ++|.|++++|+.|.+.+
T Consensus       163 ~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.85  E-value=2.1e-21  Score=163.56  Aligned_cols=169  Identities=18%  Similarity=0.218  Sum_probs=100.2

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT  143 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (324)
                      ......+|+|+|.+|||||||+++|++..+.. .+..       +.. .....                           
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-------t~~-~~~~~---------------------------   57 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-------TVG-YNVET---------------------------   57 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-------CSS-EEEEE---------------------------
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-------ccc-eeEEE---------------------------
Confidence            34566889999999999999999999887654 2111       110 00000                           


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNML  221 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~  221 (324)
                          +.             .....+.||||||++++..  ...    ..  -..+|++++|+|......  ....|...+
T Consensus        58 ----~~-------------~~~~~~~i~Dt~G~~~~~~--~~~----~~--~~~~d~ii~v~D~~~~~s~~~~~~~~~~~  112 (199)
T 4bas_A           58 ----FE-------------KGRVAFTVFDMGGAKKFRG--LWE----TY--YDNIDAVIFVVDSSDHLRLCVVKSEIQAM  112 (199)
T ss_dssp             ----EE-------------ETTEEEEEEEECCSGGGGG--GGG----GG--CTTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred             ----EE-------------eCCEEEEEEECCCCHhHHH--HHH----HH--HhcCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence                00             2356889999999987621  111    01  134699999999976432  121221111


Q ss_pred             HHHHHHhh-------cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeec
Q 020549          222 YACSILYK-------TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVS  294 (324)
Q Consensus       222 ~~~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vS  294 (324)
                        +.....       .++|+|+|+||+|+.......++.+.+. +..                   + -.....++++||
T Consensus       113 --~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-~~~-------------------~-~~~~~~~~~~~S  169 (199)
T 4bas_A          113 --LKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD-LTT-------------------L-MGDHPFVIFASN  169 (199)
T ss_dssp             --HTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT-HHH-------------------H-HTTSCEEEEECB
T ss_pred             --HhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc-chh-------------------h-ccCCeeEEEEee
Confidence              010001       2899999999999987633222222111 000                   0 001346899999


Q ss_pred             cccCCChHHHHHHHHHHHHHHH
Q 020549          295 SVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       295 A~~g~gv~~l~~~i~~~~~~~~  316 (324)
                      |++|.||+++|+.|.+.+....
T Consensus       170 a~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          170 GLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999887643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=6.2e-21  Score=169.31  Aligned_cols=160  Identities=21%  Similarity=0.323  Sum_probs=100.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+|+|++....             +..+|+.+ ++..                 .+.+.     
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------v~~~pg~t-v~~~-----------------~~~~~-----   46 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------VGNWPGVT-VERK-----------------SGLVK-----   46 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC-------------CCSSSCCC-CSCE-----------------EEECT-----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCCc-EEEE-----------------EEEEe-----
Confidence            468999999999999999999986432             22333222 1100                 01000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    . +..+.||||||+.++............++....+|++++|+|++...   . .   +.....+.
T Consensus        47 --------------~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~-~---~~~~~~l~  104 (272)
T 3b1v_A           47 --------------K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---R-N---LYLTTQLI  104 (272)
T ss_dssp             --------------T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---H-H---HHHHHHHH
T ss_pred             --------------c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---h-H---HHHHHHHH
Confidence                          2 46899999999987632221122222334334689999999986521   1 1   11123344


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+.......   .....+.+              .         -+++++++||++|.|++++|+.|
T Consensus       105 ~~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~--------------~---------lg~~vi~~SA~~g~gi~el~~~i  158 (272)
T 3b1v_A          105 ETGIPVTIALNMIDVLDGQGKK---INVDKLSY--------------H---------LGVPVVATSALKQTGVDQVVKKA  158 (272)
T ss_dssp             HTCSCEEEEEECHHHHHHTTCC---CCHHHHHH--------------H---------HTSCEEECBTTTTBSHHHHHHHH
T ss_pred             hcCCCEEEEEEChhhCCcCCcH---HHHHHHHH--------------H---------cCCCEEEEEccCCCCHHHHHHHH
Confidence            4689999999999986432111   11121111              1         14789999999999999999999


Q ss_pred             HHHH
Q 020549          309 EESA  312 (324)
Q Consensus       309 ~~~~  312 (324)
                      .+.+
T Consensus       159 ~~~~  162 (272)
T 3b1v_A          159 AHTT  162 (272)
T ss_dssp             HHSC
T ss_pred             HHHH
Confidence            8865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=1.8e-20  Score=157.44  Aligned_cols=170  Identities=15%  Similarity=0.123  Sum_probs=101.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+|+|++|||||||+|+|++..+....           ...++.+ .+.                    ...  
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~t-~~~--------------------~~~--   65 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLART-----------SSKPGKT-QTL--------------------NFY--   65 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------------------CCE--------------------EEE--
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCcccc-----------CCCCCce-eeE--------------------EEE--
Confidence            345788999999999999999999987543211           1111111 000                    000  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh----hhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                                       ..+.++.||||||+......    ..........+.. ..+|++++|+|+..+.......   
T Consensus        66 -----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---  125 (195)
T 1svi_A           66 -----------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ---  125 (195)
T ss_dssp             -----------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH---
T ss_pred             -----------------EECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH---
Confidence                             01347999999996443110    0111122223332 2348999999998766544321   


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                        .+..+...+.|+++|+||+|+..........+.+.   +.+                   ......+++++||++|.|
T Consensus       126 --~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~Sa~~~~g  181 (195)
T 1svi_A          126 --MYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVR---QTL-------------------NIDPEDELILFSSETKKG  181 (195)
T ss_dssp             --HHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHH---HHH-------------------TCCTTSEEEECCTTTCTT
T ss_pred             --HHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHH---HHH-------------------cccCCCceEEEEccCCCC
Confidence              12334457899999999999998654433222222   111                   011247899999999999


Q ss_pred             hHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQ  313 (324)
Q Consensus       301 v~~l~~~i~~~~~  313 (324)
                      ++++++.|.+.++
T Consensus       182 v~~l~~~l~~~l~  194 (195)
T 1svi_A          182 KDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=7.9e-21  Score=158.89  Aligned_cols=168  Identities=17%  Similarity=0.178  Sum_probs=96.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+++|.+|||||||+++|++..+. ..   .    ++.. ....                        .+.    
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~---~----~t~~-~~~~------------------------~~~----   56 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HT---S----PTIG-SNVE------------------------EIV----   56 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EE---E----CCSC-SSCE------------------------EEE----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cC---c----CCCc-cceE------------------------EEE----
Confidence            35689999999999999999999976553 11   1    1110 0000                        000    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      ..+..+.||||||++++..  ..    ...+  ..+|++++|+|+.....  ....|...+  .
T Consensus        57 ----------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~--~  110 (187)
T 1zj6_A           57 ----------------INNTRFLMWDIGGQESLRS--SW----NTYY--TNTEFVIVVVDSTDRERISVTREELYKM--L  110 (187)
T ss_dssp             ----------------ETTEEEEEEECCC----CG--GG----HHHH--TTCCEEEEEEETTCTTTHHHHHHHHHHH--H
T ss_pred             ----------------ECCEEEEEEECCCCHhHHH--HH----HHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHH--H
Confidence                            1246789999999877521  11    1112  34699999999876532  222221111  0


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~  303 (324)
                      ......+.|+++|+||+|+.......+..+.+.                     ..  .+ ....+++++||++|.|+++
T Consensus       111 ~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~g~gi~~  167 (187)
T 1zj6_A          111 AHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------LT--SIKDHQWHIQACCALTGEGLCQ  167 (187)
T ss_dssp             TSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GG--GCCSSCEEEEECBTTTTBTHHH
T ss_pred             hchhhCCCeEEEEEECCCCcCCCCHHHHHHHhC---------------------hh--hhcCCCcEEEEccCCCCcCHHH
Confidence            111125799999999999976422111111110                     00  00 1235899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 020549          304 YFKAVEESAQEFMETYK  320 (324)
Q Consensus       304 l~~~i~~~~~~~~~~~~  320 (324)
                      +++.|.+.+...+..+.
T Consensus       168 l~~~l~~~~~~~~~~~~  184 (187)
T 1zj6_A          168 GLEWMMSRLKIRLEHHH  184 (187)
T ss_dssp             HHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHhhhhc
Confidence            99999998866555443

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.85  E-value=6.5e-21  Score=157.46  Aligned_cols=163  Identities=15%  Similarity=0.190  Sum_probs=97.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|++|||||||+++|++..+......++       . ..+..    .                  .+...   
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~-~~~~~----~------------------~~~~~---   52 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI-------G-VEFLN----K------------------DLEVD---   52 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC-------S-EEEEE----E------------------EEEET---
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-------e-eeEEE----E------------------EEEEC---
Confidence            45789999999999999999999876653221110       0 00000    0                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..      .....  ...+|++++|+|......  ....|...+   .
T Consensus        53 ---------------~~~~~~~i~Dt~G~~~~~~------~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~  106 (177)
T 1wms_A           53 ---------------GHFVTMQIWDTAGQERFRS------LRTPF--YRGSDCCLLTFSVDDSQSFQNLSNWKKEF---I  106 (177)
T ss_dssp             ---------------TEEEEEEEEECCCCGGGHH------HHGGG--GTTCSEEEEEEETTCHHHHHTHHHHHHHH---H
T ss_pred             ---------------CEEEEEEEEeCCCchhhhh------hHHHH--HhcCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence                           1135789999999877521      11111  134689999999865431  222332222   2


Q ss_pred             HHhh----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          226 ILYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       226 ~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                      ....    .+.|+++|+||+|+.......+....+   .                      ......+++++||++|.|+
T Consensus       107 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~----------------------~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A          107 YYADVKEPESFPFVILGNKIDISERQVSTEEAQAW---C----------------------RDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             HHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH---H----------------------HHTTCCCEEECCTTTCTTH
T ss_pred             HHccccccCCCcEEEEEECCcccccccCHHHHHHH---H----------------------HhcCCceEEEEeCCCCCCH
Confidence            2222    678999999999997432111111111   1                      1123578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQE  314 (324)
Q Consensus       302 ~~l~~~i~~~~~~  314 (324)
                      +++|+.|.+.+..
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.85  E-value=1.5e-21  Score=161.52  Aligned_cols=169  Identities=18%  Similarity=0.267  Sum_probs=102.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+++|++|||||||+++|++..+......       +.     +..+.                   ...+.  
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-------~~-----~~~~~-------------------~~~~~--   51 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAG-------GI-----TQHIG-------------------AYQVT--   51 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCC-------SS-----STTCC-------------------CCEEE--
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCC-------ce-----eEeee-------------------EEEEE--
Confidence            34678899999999999999999998766532210       00     00000                   00000  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       ..+..+.||||||+.++.....        .....+|++++|+|+........     +..+.
T Consensus        52 -----------------~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~~~~~-----~~~l~  101 (178)
T 2lkc_A           52 -----------------VNDKKITFLDTPGHEAFTTMRA--------RGAQVTDIVILVVAADDGVMPQT-----VEAIN  101 (178)
T ss_dssp             -----------------ETTEEEEESCCCSSSSSSCSCC--------SSCCCCCEEEEEEETTCCCCHHH-----HHHHH
T ss_pred             -----------------eCCceEEEEECCCCHHHHHHHH--------HHHhhCCEEEEEEECCCCCcHHH-----HHHHH
Confidence                             1245788999999887622110        00134689999999877544332     22224


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .+...++|+++|+||+|+..... .+....+.    ..       ..+..       .+....+++++||++|.|+++++
T Consensus       102 ~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~----~~-------~~~~~-------~~~~~~~~~~~Sa~~~~gv~~l~  162 (178)
T 2lkc_A          102 HAKAANVPIIVAINKMDKPEANP-DRVMQELM----EY-------NLVPE-------EWGGDTIFCKLSAKTKEGLDHLL  162 (178)
T ss_dssp             HHGGGSCCEEEEEETTTSSCSCH-HHHHHHHT----TT-------TCCBT-------TTTSSEEEEECCSSSSHHHHHHH
T ss_pred             HHHhCCCCEEEEEECccCCcCCH-HHHHHHHH----hc-------CcChh-------HcCCcccEEEEecCCCCCHHHHH
Confidence            45557899999999999986421 01111110    00       00000       11112589999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          306 KAVEESAQEFM  316 (324)
Q Consensus       306 ~~i~~~~~~~~  316 (324)
                      +.|.+.+....
T Consensus       163 ~~l~~~~~~~~  173 (178)
T 2lkc_A          163 EMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHhhhhhc
Confidence            99998876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.85  E-value=1.7e-21  Score=159.18  Aligned_cols=161  Identities=12%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|++..+...+.++       .. ..+...                       +...    
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-------~~-~~~~~~-----------------------~~~~----   47 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-------IE-DSYRKQ-----------------------VEVD----   47 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC-------SE-EEEEEE-----------------------EESS----
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-------cc-ceEEEE-----------------------EEEC----
Confidence            468999999999999999999987654322111       00 000000                       0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..      .....+.  .+|++++|+|.....  .....|...+  ...
T Consensus        48 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~~  103 (167)
T 1c1y_A           48 --------------CQQCMLEILDTAGTEQFTA------MRDLYMK--NGQGFALVYSITAQSTFNDLQDLREQI--LRV  103 (167)
T ss_dssp             --------------SCEEEEEEEEECSSCSSTT------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHH--HHH
T ss_pred             --------------CEEEEEEEEECCChHHHHH------HHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHH--HHh
Confidence                          1245688999999887621      1111222  258888998876532  2222232211  112


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.+.....  .+....+.                      ......+++++||++|.|++++++
T Consensus       104 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A          104 KDTEDVPMILVGNKCDLEDERVVG--KEQGQNLA----------------------RQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             HCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             hCcCCCcEEEEEECccccccccCC--HHHHHHHH----------------------HHccCCcEEEecCCCCCCHHHHHH
Confidence            223579999999999997543210  01111111                      112357899999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|.+.+
T Consensus       160 ~l~~~i  165 (167)
T 1c1y_A          160 DLVRQI  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.85  E-value=1.3e-21  Score=163.21  Aligned_cols=167  Identities=15%  Similarity=0.212  Sum_probs=98.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|++|||||||+++|++..+...+..       +. ...+...                       ....   
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~---   48 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDP-------TI-EDSYRKQ-----------------------VVID---   48 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT-------TC-CEEEEEE-----------------------EEET---
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------Cc-hheEEEE-----------------------EEEC---
Confidence            357899999999999999999998765432110       00 0000000                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..  ..    ...+.  .+|++++|+|.....  .....|...+  ..
T Consensus        49 ---------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~  103 (189)
T 4dsu_A           49 ---------------GETCLLDILDTAGQEEYSA--MR----DQYMR--TGEGFLCVFAINNTKSFEDIHHYREQI--KR  103 (189)
T ss_dssp             ---------------TEEEEEEEEECCCC---CT--TH----HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred             ---------------CcEEEEEEEECCCcHHHHH--HH----HHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHH--HH
Confidence                           1234578999999887521  11    11122  257888888886532  1122222211  12


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|+++|+||+|+.......+....+.   .                     .  .+.+++++||++|.|++++|
T Consensus       104 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~---------------------~--~~~~~~~~Sa~~g~gi~~l~  157 (189)
T 4dsu_A          104 VKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---R---------------------S--YGIPFIETSAKTRQGVDDAF  157 (189)
T ss_dssp             HTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH---H---------------------H--HTCCEEECCTTTCTTHHHHH
T ss_pred             hcCCCCCcEEEEEECccCcccccCHHHHHHHH---H---------------------H--cCCeEEEEeCCCCCCHHHHH
Confidence            22335799999999999985432222221111   1                     1  14689999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 020549          306 KAVEESAQEFMETY  319 (324)
Q Consensus       306 ~~i~~~~~~~~~~~  319 (324)
                      ..|.+.+......+
T Consensus       158 ~~l~~~~~~~~~~~  171 (189)
T 4dsu_A          158 YTLVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhc
Confidence            99999987655443

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.85  E-value=1e-20  Score=154.92  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=96.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+++|++..+......++.     .. +. ...                       +...    
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~-----~~-~~-~~~-----------------------~~~~----   48 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG-----ID-FK-IKT-----------------------VDIN----   48 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC------------CC-EE-EEE-----------------------EESS----
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccc-----ee-EE-EEE-----------------------EEEC----
Confidence            46899999999999999999998866533221110     00 00 000                       0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..  ...    ..+  ..+|++++|+|......  ....|   +..+..
T Consensus        49 --------------~~~~~~~l~D~~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~  103 (170)
T 1g16_A           49 --------------GKKVKLQIWDTAGQERFRT--ITT----AYY--RGAMGIILVYDITDERTFTNIKQW---FKTVNE  103 (170)
T ss_dssp             --------------SCEEEEEEECCTTGGGTSC--CCH----HHH--TTEEEEEEEEETTCHHHHHTHHHH---HHHHHH
T ss_pred             --------------CEEEEEEEEeCCCChhhhh--hHH----HHh--ccCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence                          1134788999999877521  111    111  24589999999865321  11223   222223


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......+.   ...+.+                     .  .+.+++++||++|.|+++++.
T Consensus       104 ~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gv~~l~~  157 (170)
T 1g16_A          104 HANDEAQLLLVGNKSDMETRVVTADQ---GEALAK---------------------E--LGIPFIESSAKNDDNVNEIFF  157 (170)
T ss_dssp             HSCTTCEEEEEEECTTCTTCCSCHHH---HHHHHH---------------------H--HTCCEEECBTTTTBSHHHHHH
T ss_pred             hcCCCCcEEEEEECccCCcCccCHHH---HHHHHH---------------------H--cCCeEEEEECCCCCCHHHHHH
Confidence            33357999999999999543211111   111111                     1  136899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.+.+
T Consensus       158 ~l~~~~~~  165 (170)
T 1g16_A          158 TLAKLIQE  165 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.84  E-value=1.7e-21  Score=158.92  Aligned_cols=161  Identities=14%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|++..+...+.+       +... .+...+                       ...    
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~-~~~~~~-----------------------~~~----   47 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDP-------TIED-FYRKEI-----------------------EVD----   47 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-------TCCE-EEEEEE-----------------------EET----
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCC-------Ccce-eEEEEE-----------------------EEC----
Confidence            46899999999999999999998765432110       0000 000000                       000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..      .....+.  .+|.+++++|.....  .....|...+  ...
T Consensus        48 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--~~~  103 (167)
T 1kao_A           48 --------------SSPSVLEILDTAGTEQFAS------MRDLYIK--NGQGFILVYSLVNQQSFQDIKPMRDQI--IRV  103 (167)
T ss_dssp             --------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HHH
T ss_pred             --------------CEEEEEEEEECCCchhhHH------HHHHHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHH--HHh
Confidence                          1234588999999877521      1111222  248999999987532  1122221111  122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.+.....  ......+.+                     .  .+.+++++||++|.|++++++
T Consensus       104 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~  158 (167)
T 1kao_A          104 KRYEKVPVILVGNKVDLESEREVS--SSEGRALAE---------------------E--WGCPFMETSAKSKTMVDELFA  158 (167)
T ss_dssp             TTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTSCEEEECTTCHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCcccccccCC--HHHHHHHHH---------------------H--hCCCEEEecCCCCcCHHHHHH
Confidence            233579999999999987543210  011111111                     1  146899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|.+.+.
T Consensus       159 ~l~~~~~  165 (167)
T 1kao_A          159 EIVRQMN  165 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.84  E-value=3.4e-21  Score=157.98  Aligned_cols=165  Identities=15%  Similarity=0.153  Sum_probs=96.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|++|||||||+++|++..+.....++       .........+                       ...   
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-------~~~~~~~~~~-----------------------~~~---   51 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT-------LGASFLTKKL-----------------------NIG---   51 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCC-------CSCEEEEEEE-----------------------ESS---
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCc-------cceEEEEEEE-----------------------EEC---
Confidence            4578999999999999999999987654322110       1000000000                       000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.++.....        ..-..+|++++|+|....... ......+..+...
T Consensus        52 ---------------~~~~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~  107 (170)
T 1z08_A           52 ---------------GKRVNLAIWDTAGQERFHALGP--------IYYRDSNGAILVYDITDEDSF-QKVKNWVKELRKM  107 (170)
T ss_dssp             ---------------SCEEEEEEEECCCC-------C--------CSSTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred             ---------------CEEEEEEEEECCCcHhhhhhHH--------HHhccCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence                           1234788999999876521000        001346899999998653211 1111122222333


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.+.....  .+....+.+                     .  .+.+++++||++|.|++++|+.
T Consensus       108 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A          108 LGNEICLCIVGNKIDLEKERHVS--IQEAESYAE---------------------S--VGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             HGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEEEBTTTTBSHHHHHHH
T ss_pred             cCCCCeEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCeEEEecCCCCCCHHHHHHH
Confidence            34679999999999997642210  011111111                     1  1468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9987753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.84  E-value=8e-21  Score=161.15  Aligned_cols=166  Identities=17%  Similarity=0.204  Sum_probs=100.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+...+..+       .........                       +...  
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~~~~~~~~~-----------------------~~~~--   53 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT-------IGADFLTKE-----------------------VMVD--   53 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC-------CSEEEEEEE-----------------------EESS--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------ccceEEEEE-----------------------EEEC--
Confidence            35688999999999999999999988765322111       000000000                       0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..  ....    .  -..+|++++|+|+....  .....|...+   
T Consensus        54 ----------------~~~~~~~l~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---  106 (207)
T 1vg8_A           54 ----------------DRLVTMQIWDTAGQERFQS--LGVA----F--YRGADCCVLVFDVTAPNTFKTLDSWRDEF---  106 (207)
T ss_dssp             ----------------SCEEEEEEEEECSSGGGSC--SCCG----G--GTTCSEEEEEEETTCHHHHHTHHHHHHHH---
T ss_pred             ----------------CEEEEEEEEeCCCcHHHHH--hHHH----H--HhCCcEEEEEEECCCHHHHHHHHHHHHHH---
Confidence                            1235789999999877521  1100    0  13468999999986542  1222332222   


Q ss_pred             HHHh----hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          225 SILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       225 ~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                      ....    ..++|+++|+||+|+.......+....+.                         ......+++++||++|.|
T Consensus       107 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Sa~~g~g  161 (207)
T 1vg8_A          107 LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC-------------------------YSKNNIPYFETSAKEAIN  161 (207)
T ss_dssp             HHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH-------------------------HHTTSCCEEECBTTTTBS
T ss_pred             HHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHH-------------------------HhcCCceEEEEeCCCCCC
Confidence            2222    14789999999999984322111111111                         112357899999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQEFM  316 (324)
Q Consensus       301 v~~l~~~i~~~~~~~~  316 (324)
                      ++++|+.|.+.+....
T Consensus       162 i~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          162 VEQAFQTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999886543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=6.3e-21  Score=161.91  Aligned_cols=165  Identities=18%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+......+       +. ..+..    .                  .+...  
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t-------~~-~~~~~----~------------------~~~~~--   71 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT-------IG-VDFMI----K------------------TVEIN--   71 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC-------CS-EEEEE----E------------------EEEET--
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc-------cc-eeEEE----E------------------EEEEC--
Confidence            34578999999999999999999988665322111       00 00000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..      .....  -..+|++++|+|......  ....|   +..+
T Consensus        72 ----------------~~~~~l~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~D~~~~~s~~~~~~~---~~~i  124 (201)
T 2ew1_A           72 ----------------GEKVKLQIWDTAGQERFRS------ITQSY--YRSANALILTYDITCEESFRCLPEW---LREI  124 (201)
T ss_dssp             ----------------TEEEEEEEEEECCSGGGHH------HHGGG--STTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             ----------------CEEEEEEEEECCCcHHHHH------HHHHH--HhcCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence                            1135789999999876511      11111  134699999999865321  12233   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......+.|+++|+||+|+.+.....  .+....+.                      . ..+.+++++||++|.||+++
T Consensus       125 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          125 EQYASNKVITVLVGNKIDLAERREVS--QQRAEEFS----------------------E-AQDMYYLETSAKESDNVEKL  179 (201)
T ss_dssp             HHHSCTTCEEEEEEECGGGGGGCSSC--HHHHHHHH----------------------H-HHTCCEEECCTTTCTTHHHH
T ss_pred             HHhcCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHH
Confidence            33334578999999999997542210  01111111                      1 12468999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |..|.+.+...
T Consensus       180 ~~~l~~~i~~~  190 (201)
T 2ew1_A          180 FLDLACRLISE  190 (201)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.84  E-value=5e-21  Score=159.30  Aligned_cols=175  Identities=16%  Similarity=0.168  Sum_probs=99.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||+++|++..+...+.++       ... .+...+                       ...   
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t-------~~~-~~~~~~-----------------------~~~---   49 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------VFD-NYSANV-----------------------MVD---   49 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC-------SCC-EEEEEE-----------------------EET---
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-------ccc-eeEEEE-----------------------EEC---
Confidence            3478999999999999999999987664322111       100 000000                       000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chh-HHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~-~~~~~~~~~  224 (324)
                                     .....+.||||||++++..  ....      .-..+|++++|+|......  ... .|...+   
T Consensus        50 ---------------~~~~~~~i~Dt~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~---  103 (186)
T 1mh1_A           50 ---------------GKPVNLGLWDTAGQEDYDR--LRPL------SYPQTDVSLICFSLVSPASFENVRAKWYPEV---  103 (186)
T ss_dssp             ---------------TEEEEEEEECCCCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred             ---------------CEEEEEEEEECCCCHhHHH--HHHH------hccCCcEEEEEEECCChhhHHHHHHHHHHHH---
Confidence                           1245678999999977521  1100      1134699999999865321  111 232211   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ... ..+.|+++|+||+|+.......+......       ..     .+.......+.......+++++||++|.|++++
T Consensus       104 ~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  170 (186)
T 1mh1_A          104 RHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKK-------LT-----PITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  170 (186)
T ss_dssp             HHH-STTSCEEEEEECHHHHTCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HHh-CCCCCEEEEeEcccccccchhhhhhcccc-------cc-----cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHH
Confidence            211 13799999999999976543221111100       00     000000000111122248999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |+.|.+.+.+.
T Consensus       171 ~~~l~~~~~~~  181 (186)
T 1mh1_A          171 FDEAIRAVLCP  181 (186)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHHhcc
Confidence            99999987543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=3.7e-21  Score=159.36  Aligned_cols=166  Identities=20%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|++|||||||+++|++..+.....      .++.       ..+...                 ... .  
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~------~~t~-------~~~~~~-----------------~~~-~--   54 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF------ISTV-------GIDFRN-----------------KVL-D--   54 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC------CCCC-------SCEEEE-----------------EEE-E--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc------CCce-------eeEEEE-----------------EEE-E--
Confidence            456889999999999999999999886642110      0000       000000                 000 0  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                       +             ......+.||||||+.++..      .....+  ..+|++++|+|......  ....|   +..+
T Consensus        55 -~-------------~~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~~~i  109 (180)
T 2g6b_A           55 -V-------------DGVKVKLQMWDTAGQERFRS------VTHAYY--RDAHALLLLYDVTNKASFDNIQAW---LTEI  109 (180)
T ss_dssp             -E-------------TTEEEEEEEEECCCC--------------CCG--GGCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             -E-------------CCEEEEEEEEeCCCcHHHHH------HHHHHc--cCCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence             0             01234788999999876521      011111  23689999999876321  11223   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.|++++
T Consensus       110 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A          110 HEYAQHDVALMLLGNKVDSAHERVVK--REDGEKLAK---------------------E--YGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             HHHSCTTCEEEEEEECCSTTSCCCSC--HHHHHHHHH---------------------H--HTCCEEECCTTTCTTHHHH
T ss_pred             HHhCCCCCcEEEEEECcccCcccccC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHH
Confidence            33333679999999999998643210  001111111                     1  1468999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      ++.|.+.+...
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.84  E-value=3.3e-21  Score=162.14  Aligned_cols=165  Identities=17%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+|+|.+|||||||+++|++..+......       +..     .+.....                  +... 
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-------t~~-----~~~~~~~------------------~~~~-   71 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKS-------TVG-----VDFKIKT------------------VELR-   71 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------C-------CTT-----EEEEEEE------------------EEET-
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCC-------ccc-----eeEEEEE------------------EEEC-
Confidence            44567899999999999999999998765432110       000     0000000                  0000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~  223 (324)
                                       .....+.||||||+.++..      .....++  .+|++++|+|......  ....|   +..
T Consensus        72 -----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~~--~~d~iilV~D~~~~~s~~~~~~~---~~~  123 (192)
T 2il1_A           72 -----------------GKKIRLQIWDTAGQERFNS------ITSAYYR--SAKGIILVYDITKKETFDDLPKW---MKM  123 (192)
T ss_dssp             -----------------TEEEEEEEEEECCSGGGHH------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHH---HHH
T ss_pred             -----------------CeEEEEEEEeCCCcHHHHH------HHHHHhc--CCCEEEEEEECcCHHHHHHHHHH---HHH
Confidence                             1235789999999877521      1112222  3589999999876322  22233   222


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +......++|+++|+||+|+.......  .+....+.                      ......+++++||++|.||++
T Consensus       124 i~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          124 IDKYASEDAELLLVGNKLDCETDREIT--RQQGEKFA----------------------QQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             HHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------HTSTTCEEEECBTTTTBSHHH
T ss_pred             HHHhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------HhcCCCeEEEEeCCCCCCHHH
Confidence            233344579999999999997542210  01111111                      112357899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      +|+.|.+.+.
T Consensus       180 l~~~l~~~i~  189 (192)
T 2il1_A          180 IFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998775

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.84  E-value=3e-21  Score=164.09  Aligned_cols=175  Identities=15%  Similarity=0.171  Sum_probs=97.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+++|.+|||||||+++|++..+...+..+       .. ..+...+                       ...  
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t-------~~-~~~~~~~-----------------------~~~--   74 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------VF-DNYSANV-----------------------MVD--   74 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCC-------SE-EEEEEEE-----------------------ECC--
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCe-------ec-ceeEEEE-----------------------EEC--
Confidence            45689999999999999999999987664322111       10 0000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||++++......        .-..+|++++|+|.............++..+..
T Consensus        75 ----------------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  130 (204)
T 4gzl_A           75 ----------------GKPVNLGLWDTAGLEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRAKWYPEVRH  130 (204)
T ss_dssp             -----------------CEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             ----------------CEEEEEEEEECCCchhhHHHHHH--------HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                            12346679999999776211100        113469999999987532211110011211111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      . ..++|+++|+||+|+.......+......            ...+.......+.......+++++||++|.||+++|+
T Consensus       131 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  197 (204)
T 4gzl_A          131 H-CPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD  197 (204)
T ss_dssp             H-CSSCCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred             h-CCCCCEEEEEechhhccchhhhhhhhccc------------cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHH
Confidence            1 14799999999999987653222211100            0000000111111223345799999999999999999


Q ss_pred             HHHHH
Q 020549          307 AVEES  311 (324)
Q Consensus       307 ~i~~~  311 (324)
                      .|.+.
T Consensus       198 ~l~~~  202 (204)
T 4gzl_A          198 EAIRA  202 (204)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=7.5e-21  Score=159.64  Aligned_cols=166  Identities=14%  Similarity=0.126  Sum_probs=102.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+|+|++|||||||+++|++..+......++ +    .......                         +... 
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~----~~~~~~~-------------------------~~~~-   68 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV-G----IDFKVKT-------------------------VYRH-   68 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE-T----TTEEEEE-------------------------EEET-
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe-e----eEEEEEE-------------------------EEEC-
Confidence            3456899999999999999999999987765443332 0    0000000                         0000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~  223 (324)
                                       .....+.||||||+.++.      ......+  ..+|++++|+|.....  .....|   +..
T Consensus        69 -----------------~~~~~~~i~Dt~G~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~  120 (191)
T 3dz8_A           69 -----------------EKRVKLQIWDTAGQERYR------TITTAYY--RGAMGFILMYDITNEESFNAVQDW---ATQ  120 (191)
T ss_dssp             -----------------TTTEEEEEECHHHHHHCH------HHHHHHH--TTCCEEEEEEETTCHHHHHTHHHH---HHH
T ss_pred             -----------------CEEEEEEEEeCCChHHHH------HHHHHHH--ccCCEEEEEEECcCHHHHHHHHHH---HHH
Confidence                             224578999999976651      1111222  3468999999986531  122233   222


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +......++|+++|+||+|+.......  .+....+.                      .. .+.+++++||++|.||++
T Consensus       121 i~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          121 IKTYSWDNAQVILVGNKCDMEEERVVP--TEKGQLLA----------------------EQ-LGFDFFEASAKENISVRQ  175 (191)
T ss_dssp             HHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-HTCEEEECBTTTTBSHHH
T ss_pred             HHHhcCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------HH-cCCeEEEEECCCCCCHHH
Confidence            233333689999999999986542210  01111111                      11 146899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      +|+.|.+.+.+.
T Consensus       176 l~~~l~~~i~~~  187 (191)
T 3dz8_A          176 AFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.84  E-value=1.7e-20  Score=157.51  Aligned_cols=168  Identities=17%  Similarity=0.168  Sum_probs=99.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+|+|++|||||||+++|++..+......++     +..   +..    .                  .+... 
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~-   66 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----GVE---FGA----R------------------MVNID-   66 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----C-----CSS---EEE----E------------------EEEET-
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-----cce---eEE----E------------------EEEEC-
Confidence            3456789999999999999999999887654222111     000   000    0                  00000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       .....+.||||||+.++..  ...    ..+  ..+|++++|+|....... ......+..+.
T Consensus        67 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~d~ii~v~d~~~~~s~-~~~~~~l~~i~  120 (191)
T 2a5j_A           67 -----------------GKQIKLQIWDTAGQESFRS--ITR----SYY--RGAAGALLVYDITRRETF-NHLTSWLEDAR  120 (191)
T ss_dssp             -----------------TEEEEEEEECCTTGGGTSC--CCH----HHH--TTCSEEEEEEETTCHHHH-HTHHHHHHHHH
T ss_pred             -----------------CEEEEEEEEECCCchhhhh--hHH----HHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHH
Confidence                             1235789999999877521  111    111  346899999998653211 11111122222


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|+++|+||+|+.+.....  .+....+..                     .  .+.+++++||++|.||+++|
T Consensus       121 ~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A          121 QHSSSNMVIMLIGNKSDLESRRDVK--REEGEAFAR---------------------E--HGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             HHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHHHHH
T ss_pred             HhcCCCCCEEEEEECcccCCccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHH
Confidence            2233579999999999997532210  011111111                     1  14689999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          306 KAVEESAQEF  315 (324)
Q Consensus       306 ~~i~~~~~~~  315 (324)
                      ..|.+.+.+.
T Consensus       176 ~~l~~~i~~~  185 (191)
T 2a5j_A          176 INTAKEIYRK  185 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.84  E-value=8.7e-21  Score=167.04  Aligned_cols=159  Identities=20%  Similarity=0.244  Sum_probs=99.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.+|||||||+|+|++..+..       +..++++.....                        +.+.      
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-------~~~pg~Tv~~~~------------------------~~~~------   44 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRV-------GNWPGVTVEKKT------------------------GEFL------   44 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEE-------EECTTSSSEEEE------------------------EEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCc-------cCCCCceEEEEE------------------------EEEE------
Confidence            479999999999999999999875321       111222110000                        1110      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh---hhHHHHH-HHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS---ASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~-~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                   ..+..+.||||||+..+....   .....+. .++....+|++++|+|+...    ...   +....
T Consensus        45 -------------~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----~~~---~~l~~  104 (256)
T 3iby_A           45 -------------LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----ERH---LYLTS  104 (256)
T ss_dssp             -------------ETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----HHH---HHHHH
T ss_pred             -------------ECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----hhH---HHHHH
Confidence                         124578999999998763210   2222233 33333568999999999651    111   22234


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .+...++|+++|+||+|+.......   .....+.+                      .. +++++++||++|.|+++|+
T Consensus       105 ~l~~~~~pvilv~NK~Dl~~~~~~~---~~~~~l~~----------------------~l-g~~vi~~SA~~g~gi~el~  158 (256)
T 3iby_A          105 QLFELGKPVVVALNMMDIAEHRGIS---IDTEKLES----------------------LL-GCSVIPIQAHKNIGIPALQ  158 (256)
T ss_dssp             HHTTSCSCEEEEEECHHHHHHTTCE---ECHHHHHH----------------------HH-CSCEEECBGGGTBSHHHHH
T ss_pred             HHHHcCCCEEEEEEChhcCCcCCcH---HHHHHHHH----------------------Hc-CCCEEEEECCCCCCHHHHH
Confidence            5566789999999999987543211   11111111                      11 4799999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      +.|.+.
T Consensus       159 ~~i~~~  164 (256)
T 3iby_A          159 QSLLHC  164 (256)
T ss_dssp             HHHHTC
T ss_pred             HHHHhh
Confidence            999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.84  E-value=1.6e-21  Score=165.12  Aligned_cols=170  Identities=18%  Similarity=0.098  Sum_probs=97.7

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...+.++|+|+|.+|||||||+++|++..+...+..++       . ..+...+                       .. 
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~-   67 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV-------E-NTYSKIV-----------------------TL-   67 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCS-------E-EEEEEEE-----------------------C--
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCcc-------c-eEEEEEE-----------------------EE-
Confidence            34567899999999999999999999987654321110       0 0000000                       00 


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLY  222 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~  222 (324)
                                       ......+.||||||+.++..  ....    .  -..+|++++|+|.....  .....|...+.
T Consensus        68 -----------------~~~~~~~~l~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  122 (201)
T 3oes_A           68 -----------------GKDEFHLHLVDTAGQDEYSI--LPYS----F--IIGVHGYVLVYSVTSLHSFQVIESLYQKLH  122 (201)
T ss_dssp             --------------------CEEEEEEEECCCCTTCC--CCGG----G--TTTCCEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             -----------------CCEEEEEEEEECCCccchHH--HHHH----H--HhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence                             02256789999999887621  1110    0  12368999999986532  11122211110


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                        ......++|+++|+||+|+........  .....+..                     .  .+.+++++||++|.||+
T Consensus       123 --~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~  175 (201)
T 3oes_A          123 --EGHGKTRVPVVLVGNKADLSPEREVQA--VEGKKLAE---------------------S--WGATFMESSARENQLTQ  175 (201)
T ss_dssp             --C-----CCCEEEEEECTTCGGGCCSCH--HHHHHHHH---------------------H--HTCEEEECCTTCHHHHH
T ss_pred             --HhcCCCCCCEEEEEECccCccccccCH--HHHHHHHH---------------------H--hCCeEEEEeCCCCCCHH
Confidence              111234789999999999975432110  01111111                     1  24689999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 020549          303 AYFKAVEESAQEFMET  318 (324)
Q Consensus       303 ~l~~~i~~~~~~~~~~  318 (324)
                      ++|..|.+.+......
T Consensus       176 ~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          176 GIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999988765443

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=4e-21  Score=161.53  Aligned_cols=169  Identities=15%  Similarity=0.198  Sum_probs=98.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+|+|++|||||||+++|++..+......+       . ...+..    .                  .+... 
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~-------~-~~~~~~----~------------------~~~~~-   68 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT-------I-GASFMT----K------------------TVPCG-   68 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCC-------S-SEEEEE----E------------------EEECS-
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCC-------c-ceeEEE----E------------------EEEeC-
Confidence            345689999999999999999999988654321100       0 000000    0                  00000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       .....+.||||||+.++..  ..    ...+  ..+|++++|+|....... .....++..+.
T Consensus        69 -----------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~--~~~d~iilV~d~~~~~s~-~~~~~~~~~i~  122 (192)
T 2fg5_A           69 -----------------NELHKFLIWDTAGQERFHS--LA----PMYY--RGSAAAVIVYDITKQDSF-YTLKKWVKELK  122 (192)
T ss_dssp             -----------------SSEEEEEEEEECCSGGGGG--GT----HHHH--TTCSEEEEEEETTCTHHH-HHHHHHHHHHH
T ss_pred             -----------------CEEEEEEEEcCCCchhhHh--hh----HHhh--ccCCEEEEEEeCCCHHHH-HHHHHHHHHHH
Confidence                             1245789999999877521  11    1122  346899999998654211 11111122222


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+......  ..++...+.+                     .  .+.+++++||++|.|+++++
T Consensus       123 ~~~~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~  177 (192)
T 2fg5_A          123 EHGPENIVMAIAGNKCDLSDIREV--PLKDAKEYAE---------------------S--IGAIVVETSAKNAINIEELF  177 (192)
T ss_dssp             HHSCTTCEEEEEEECGGGGGGCCS--CHHHHHHHHH---------------------T--TTCEEEECBTTTTBSHHHHH
T ss_pred             HhCCCCCcEEEEEECccccccccc--CHHHHHHHHH---------------------H--cCCEEEEEeCCCCcCHHHHH
Confidence            223347999999999999753211  0111111111                     1  14689999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          306 KAVEESAQEFM  316 (324)
Q Consensus       306 ~~i~~~~~~~~  316 (324)
                      +.|.+.+.+.+
T Consensus       178 ~~l~~~i~~~~  188 (192)
T 2fg5_A          178 QGISRQIPPLD  188 (192)
T ss_dssp             HHHHHTCC---
T ss_pred             HHHHHHHHhhC
Confidence            99998775443

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.84  E-value=4.4e-21  Score=164.28  Aligned_cols=177  Identities=14%  Similarity=0.154  Sum_probs=90.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|.+|||||||+++|++..+...+.++       .. ..+...+                       ...  
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t-------~~-~~~~~~~-----------------------~~~--   78 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT-------VF-ERYMVNL-----------------------QVK--   78 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCC-------CC-EEEEEEE-----------------------EET--
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------cc-eeEEEEE-----------------------EEC--
Confidence            35689999999999999999999987654322111       00 0000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh---HHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT---FMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~---~~~~~~~~  223 (324)
                                      .....+.||||||+.++..      .....+  ..+|++++|+|......-..   .|...+  
T Consensus        79 ----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--  132 (214)
T 2j1l_A           79 ----------------GKPVHLHIWDTAGQDDYDR------LRPLFY--PDASVLLLCFDVTSPNSFDNIFNRWYPEV--  132 (214)
T ss_dssp             ----------------TEEEEEEEEEC-----------------------CEEEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred             ----------------CEEEEEEEEECCCchhhhH------HHHHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHH--
Confidence                            1234788999999877521      111111  24689999999865321111   222111  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                       .. ...++|+++|+||+|+.......+......       ..     .+....+..+.......+++++||++|.||++
T Consensus       133 -~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~e  198 (214)
T 2j1l_A          133 -NH-FCKKVPIIVVGCKTDLRKDKSLVNKLRRNG-------LE-----PVTYHRGQEMARSVGAVAYLECSARLHDNVHA  198 (214)
T ss_dssp             -HH-HCSSCCEEEEEECGGGGSCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             -HH-hCCCCCEEEEEEChhhhccchhhhhhcccc-------cC-----cccHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence             11 124799999999999987643322211000       00     00000000000112234899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEFM  316 (324)
Q Consensus       304 l~~~i~~~~~~~~  316 (324)
                      +|..|.+.+.+.+
T Consensus       199 l~~~l~~~~~~~~  211 (214)
T 2j1l_A          199 VFQEAAEVALSSR  211 (214)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999886544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.84  E-value=5.8e-21  Score=168.38  Aligned_cols=163  Identities=23%  Similarity=0.252  Sum_probs=101.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|.+|||||||+|+|++..+..             ..+|+.+ ++..                 .+.+.    
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~-------------~~~pg~t-v~~~-----------------~~~~~----   48 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYV-------------ANWPGVT-VEKK-----------------EGVFT----   48 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEE-------------EECTTSC-CEEE-----------------EEEEE----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcc-------------cCCCCce-EEEE-----------------EEEEE----
Confidence            34789999999999999999999865431             1112111 0000                 00000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     ..+..+.||||||+..+............++....+|++++|+|+....   . .   +.....+
T Consensus        49 ---------------~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---~-~---~~~~~~l  106 (258)
T 3a1s_A           49 ---------------YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---Q-S---LYLLLEI  106 (258)
T ss_dssp             ---------------ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---H-H---HHHHHHH
T ss_pred             ---------------ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---h-H---HHHHHHH
Confidence                           1246789999999987632221122222333335689999999997632   1 1   1112334


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......   .....+.+                      .+ +++++++||++|.|+++|++.
T Consensus       107 ~~~~~pvilv~NK~Dl~~~~~i~---~~~~~l~~----------------------~l-g~~vi~~SA~~g~gi~el~~~  160 (258)
T 3a1s_A          107 LEMEKKVILAMTAIDEAKKTGMK---IDRYELQK----------------------HL-GIPVVFTSSVTGEGLEELKEK  160 (258)
T ss_dssp             HTTTCCEEEEEECHHHHHHTTCC---BCHHHHHH----------------------HH-CSCEEECCTTTCTTHHHHHHH
T ss_pred             HhcCCCEEEEEECcCCCCccchH---HHHHHHHH----------------------Hc-CCCEEEEEeeCCcCHHHHHHH
Confidence            45689999999999986432211   11121111                      11 479999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |.+.+.
T Consensus       161 i~~~~~  166 (258)
T 3a1s_A          161 IVEYAQ  166 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.84  E-value=2e-20  Score=154.97  Aligned_cols=168  Identities=16%  Similarity=0.200  Sum_probs=94.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|++|||||||+++|++..+.....+++     +.......  +.                       .   
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~~~~~~~~--~~-----------------------~---   52 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-----GADFLTKE--VT-----------------------V---   52 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C-----CCSCEEEE--EC-----------------------C---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-----ceEEEEEE--EE-----------------------E---
Confidence            356889999999999999999999887654322211     00000000  00                       0   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                        .            ......+.||||||+.++..      ....  .-..+|++++|+|......  ....|...+   
T Consensus        53 --~------------~~~~~~~~l~Dt~G~~~~~~------~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---  107 (182)
T 1ky3_A           53 --D------------GDKVATMQVWDTAGQERFQS------LGVA--FYRGADCCVLVYDVTNASSFENIKSWRDEF---  107 (182)
T ss_dssp             --S------------SSCCEEEEEECCC----------------C--CSTTCCEEEEEEETTCHHHHHTHHHHHHHH---
T ss_pred             --c------------CCcEEEEEEEECCCChHhhh------hhHH--HhhcCCEEEEEEECCChHHHHHHHHHHHHH---
Confidence              0            01135789999999876521      0000  0134699999999865421  122232211   


Q ss_pred             HHHh----hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          225 SILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       225 ~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                      ....    ..++|+++|+||+|+....... ..+....+.                      ......+++++||++|.|
T Consensus       108 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A          108 LVHANVNSPETFPFVILGNKIDAEESKKIV-SEKSAQELA----------------------KSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             HHHHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHHHHHH----------------------HHTTSCCEEEEBTTTTBS
T ss_pred             HHHhcccCcCCCcEEEEEECCccccccccC-CHHHHHHHH----------------------HhcCCCeEEEEecCCCCC
Confidence            2222    2578999999999996442110 001111111                      112357899999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQEF  315 (324)
Q Consensus       301 v~~l~~~i~~~~~~~  315 (324)
                      ++++|+.|.+.+.+.
T Consensus       165 i~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          165 VDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.84  E-value=1e-20  Score=158.45  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=99.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+......+       .     +.+....                  .+...  
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-------~-----~~~~~~~------------------~~~~~--   67 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVST-------V-----GIDFKVK------------------TVYRH--   67 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-------C-----CCEEEEE------------------EEEET--
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-------e-----eEEEEEE------------------EEEEC--
Confidence            34578999999999999999999988765322110       0     0000000                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..  ...    ..  -..+|++++|+|.....  .....|   +..+
T Consensus        68 ----------------~~~~~~~l~Dt~G~~~~~~--~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i  120 (189)
T 2gf9_A           68 ----------------DKRIKLQIWDTAGQERYRT--ITT----AY--YRGAMGFLLMYDIANQESFAAVQDW---ATQI  120 (189)
T ss_dssp             ----------------TEEEEEEEEECCSCCSSCC--SGG----GG--GTTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             ----------------CeEEEEEEEeCCCcHHHhh--hHH----Hh--ccCCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence                            1245789999999877521  111    01  13468999999986532  111222   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......+.|+++|+||+|+.......  .+....+.+                     . . +.+++++||++|.|++++
T Consensus       121 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~g~gi~~l  175 (189)
T 2gf9_A          121 KTYSWDNAQVILVGNKCDLEDERVVP--AEDGRRLAD---------------------D-L-GFEFFEASAKENINVKQV  175 (189)
T ss_dssp             HHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSHHHH
T ss_pred             HHhcCCCCCEEEEEECcccccccCCC--HHHHHHHHH---------------------H-c-CCeEEEEECCCCCCHHHH
Confidence            22223579999999999997542210  011111111                     1 1 368999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |+.|.+.+.+.
T Consensus       176 ~~~l~~~i~~~  186 (189)
T 2gf9_A          176 FERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.84  E-value=3.6e-20  Score=151.00  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=94.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...        .|+.. ....                         .+.      
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~--------~~t~~-~~~~-------------------------~~~------   40 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT--------IPTIG-FNVE-------------------------TVE------   40 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC--------CCCSS-CCEE-------------------------EEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc--------cCcCc-eeEE-------------------------EEE------
Confidence            3799999999999999999998765421        11111 0000                         000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-HHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILY  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~~~  228 (324)
                                   .....+.||||||+.++..      .....+  ..+|++++|+|......- ......+..+ ....
T Consensus        41 -------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~   98 (164)
T 1r8s_A           41 -------------YKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRERV-NEAREELMRMLAEDE   98 (164)
T ss_dssp             -------------CSSCEEEEEECCCCGGGHH------HHHHHT--TTCSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG
T ss_pred             -------------ECCEEEEEEEcCCChhhHH------HHHHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHHhchh
Confidence                         1256899999999877511      111112  346999999998764211 1111111111 1112


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ..+.|+++|+||+|+.+.....++...+.                     .   ..  ....+++++||++|.|++++++
T Consensus        99 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (164)
T 1r8s_A           99 LRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------L---HSLRHRNWYIQATCATSGDGLYEGLD  154 (164)
T ss_dssp             GTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred             hcCCeEEEEEECcCCcCCCCHHHHHHHhC---------------------c---ccccCccEEEEEcccCCCcCHHHHHH
Confidence            24789999999999976432111111110                     0   00  0135799999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|.+.+.
T Consensus       155 ~l~~~i~  161 (164)
T 1r8s_A          155 WLSNQLR  161 (164)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            9998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.84  E-value=1.1e-20  Score=158.25  Aligned_cols=176  Identities=15%  Similarity=0.184  Sum_probs=100.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccc--cccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA--ANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...++|+|+|++|||||||+++|++..+......++       . ..+.  ..+....             .+.+.... 
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-------~-~~~~~~~~~~~~~-------------~~~~~~~~-   66 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV-------G-IDFREKRVVYRAN-------------GPDGAVGR-   66 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC-------S-EEEEEEEEEECTT-------------SCCCSSCC-
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccccc-------c-eeeeeEEEEEecC-------------Cccccccc-
Confidence            456889999999999999999999876643221110       0 0000  0000000             00000000 


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                        .....+.||||||+.++..      .....+  ..+|++++|+|+........ ....+..+
T Consensus        67 ------------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i  119 (195)
T 3bc1_A           67 ------------------GQRIHLQLWDTAGLERFRS------LTTAFF--RDAMGFLLLFDLTNEQSFLN-VRNWISQL  119 (195)
T ss_dssp             ------------------CEEEEEEEEEECCSGGGHH------HHHHTT--TTCSEEEEEEETTCHHHHHT-HHHHHHHH
T ss_pred             ------------------CcEEEEEEEeCCCcHHHHH------HHHHHH--cCCCEEEEEEECCCHHHHHH-HHHHHHHH
Confidence                              1135789999999876511      111111  34699999999865322111 11112211


Q ss_pred             HHHhh-cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          225 SILYK-TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      ..... .++|+++|+||+|+.......  .+....+..                     .  .+.+++++||++|.|+++
T Consensus       120 ~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~  174 (195)
T 3bc1_A          120 QMHAYSENPDIVLCGNKSDLEDQRAVK--EEEARELAE---------------------K--YGIPYFETSAANGTNISH  174 (195)
T ss_dssp             HHHSSSSSCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCCEEECCTTTCTTHHH
T ss_pred             HHhcCCCCCCEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCCEEEEECCCCCCHHH
Confidence            22222 579999999999997532210  011111111                     1  146899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEFM  316 (324)
Q Consensus       304 l~~~i~~~~~~~~  316 (324)
                      +|+.|.+.+.+..
T Consensus       175 l~~~l~~~~~~~~  187 (195)
T 3bc1_A          175 AIEMLLDLIMKRM  187 (195)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.84  E-value=3.5e-21  Score=159.47  Aligned_cols=162  Identities=13%  Similarity=0.153  Sum_probs=97.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||+++|++..+.. ..       ++.. ..+...+.                       ..   
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~-------~t~~-~~~~~~~~-----------------------~~---   50 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LE-------KTES-EQYKKEML-----------------------VD---   50 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS-------SCSS-SEEEEEEE-----------------------ET---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cC-------CCcc-eeEEEEEE-----------------------EC---
Confidence            45889999999999999999999986653 11       1110 00000000                       00   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||++++.           +++  .+|++++|+|.....  .....|...+   .
T Consensus        51 ---------------~~~~~l~i~Dt~G~~~~~-----------~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~i---~   99 (178)
T 2iwr_A           51 ---------------GQTHLVLIREEAGAPDAK-----------FSG--WADAVIFVFSLEDENSFQAVSRLHGQL---S   99 (178)
T ss_dssp             ---------------TEEEEEEEEECSSSCCHH-----------HHH--HCSEEEEEEETTCHHHHHHHHHHHHHH---H
T ss_pred             ---------------CEEEEEEEEECCCCchhH-----------HHH--hCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence                           123568899999987631           111  258999999986532  2222332222   2


Q ss_pred             HHhh---cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          226 ILYK---TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       226 ~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      .+..   .++|+++|+||+|+.......-..+....+.                      ....+.+++++||++|.|++
T Consensus       100 ~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A          100 SLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX----------------------ADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             HHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH----------------------HHHSSEEEEEEBTTTTBTHH
T ss_pred             HHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH----------------------HhhcCCeEEEEeccccCCHH
Confidence            2222   4789999999999953110000001111111                      11234689999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEFME  317 (324)
Q Consensus       303 ~l~~~i~~~~~~~~~  317 (324)
                      ++|+.|.+.+.....
T Consensus       158 ~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998865443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.84  E-value=4.6e-21  Score=161.29  Aligned_cols=166  Identities=18%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+..+|+++|.+|||||||+++|++..+...+.+++       . ..+...+                       ... 
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~~-   67 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV-------F-ENFSHVM-----------------------KYK-   67 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------EET-
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee-------e-eeeEEEE-----------------------EEC-
Confidence            3456899999999999999999999987643221110       0 0000000                       000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch---hHHHhHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM---TFMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~---~~~~~~~~  222 (324)
                                       .....+.||||||++++..  ....      .-..+|++++|+|........   ..|...+ 
T Consensus        68 -----------------~~~~~~~i~Dt~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-  121 (194)
T 3reg_A           68 -----------------NEEFILHLWDTAGQEEYDR--LRPL------SYADSDVVLLCFAVNNRTSFDNISTKWEPEI-  121 (194)
T ss_dssp             -----------------TEEEEEEEEEECCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH-
T ss_pred             -----------------CEEEEEEEEECCCcHHHHH--HhHh------hccCCcEEEEEEECCCHHHHHHHHHHHHHHH-
Confidence                             1245678999999877621  1110      113468999999987532111   1232222 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                        .. ...++|+++|+||+|+..........+....+.                      .......++++||++|.||+
T Consensus       122 --~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A          122 --KH-YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC----------------------QKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             --HH-HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH----------------------HHHTCSCEEECBTTTTBSHH
T ss_pred             --HH-hCCCCCEEEEEEChhhccCCCCcccHHHHHHHH----------------------HhcCCCEEEEeecCCCCCHH
Confidence              21 224689999999999986421100111111111                      11222349999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQE  314 (324)
Q Consensus       303 ~l~~~i~~~~~~  314 (324)
                      ++|+.|.+.+..
T Consensus       177 ~l~~~l~~~i~~  188 (194)
T 3reg_A          177 EVFEKSVDCIFS  188 (194)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.84  E-value=1.3e-20  Score=153.14  Aligned_cols=157  Identities=22%  Similarity=0.294  Sum_probs=95.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...            ...+.++ .+..                 .....      
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~~~~~-~~~~-----------------~~~~~------   45 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV------------ADVPGVT-RDLK-----------------EGVVE------   45 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------------------CCE-----------------EEEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeec------------cCCCCce-ecce-----------------EEEEE------
Confidence            5799999999999999999998754311            1111110 0000                 00000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   ..+..+.||||||+.++..   ....+.....  -..+|++++++|+..+......+.  .   ..+
T Consensus        46 -------------~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~  104 (161)
T 2dyk_A           46 -------------TDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEV--A---EYL  104 (161)
T ss_dssp             -------------ETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHH--H---HHH
T ss_pred             -------------eCCceEEEEECCCCCCccc---hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHH--H---HHH
Confidence                         1244788999999876421   1111112111  135799999999988765544321  1   233


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.+...   ....+.                         . ....+++++||++|.|++++|+.
T Consensus       105 ~~~~~p~ilv~nK~Dl~~~~~---~~~~~~-------------------------~-~~~~~~~~~Sa~~~~gv~~l~~~  155 (161)
T 2dyk_A          105 RRKGKPVILVATKVDDPKHEL---YLGPLY-------------------------G-LGFGDPIPTSSEHARGLEELLEA  155 (161)
T ss_dssp             HHHTCCEEEEEECCCSGGGGG---GCGGGG-------------------------G-GSSCSCEECBTTTTBSHHHHHHH
T ss_pred             HhcCCCEEEEEECcccccchH---hHHHHH-------------------------h-CCCCCeEEEecccCCChHHHHHH
Confidence            346899999999999976521   111110                         0 12237999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       156 l~~~l  160 (161)
T 2dyk_A          156 IWERL  160 (161)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=159.55  Aligned_cols=165  Identities=16%  Similarity=0.191  Sum_probs=97.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|.+|||||||+++|++..+......++     +..   +..    .                  .+...  
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~--   74 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI-----GVD---FTM----K------------------TLEIQ--   74 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC---------------C---EEE----E------------------EEEET--
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCc-----ceE---EEE----E------------------EEEEC--
Confidence            445789999999999999999999887653222211     000   000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..      .....+  ..+|++++|+|.....  .....|   +..+
T Consensus        75 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~---~~~i  127 (201)
T 2hup_A           75 ----------------GKRVKLQIWDTAGQERFRT------ITQSYY--RSANGAILAYDITKRSSFLSVPHW---IEDV  127 (201)
T ss_dssp             ----------------TEEEEEEEECCTTCGGGHH------HHHHHH--TTCSEEEEEEETTBHHHHHTHHHH---HHHH
T ss_pred             ----------------CEEEEEEEEECCCcHhHHH------HHHHHH--hhCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence                            1135789999999877521      111222  3468999999986532  122223   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccC-ceeeeccccCCChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNL-KSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~iv~vSA~~g~gv~~  303 (324)
                      ......++|+++|+||+|+.......  .++...+.                      ... +. +++++||++|.||++
T Consensus       128 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~----------------------~~~-~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          128 RKYAGSNIVQLLIGNKSDLSELREVS--LAEAQSLA----------------------EHY-DILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             HHHSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HHT-TCSEEEECBTTTTBSHHH
T ss_pred             HHhcCCCCCEEEEEECCccccccccC--HHHHHHHH----------------------HHc-CCCEEEEEeCCCCCCHHH
Confidence            22233679999999999997532110  11111111                      111 34 899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      +|..|.+.+...
T Consensus       183 l~~~l~~~i~~~  194 (201)
T 2hup_A          183 AFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.84  E-value=3.6e-20  Score=151.93  Aligned_cols=162  Identities=20%  Similarity=0.238  Sum_probs=98.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+++|++|||||||+++|++..+...        .++.. .....                        +.    
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------~~t~~-~~~~~------------------------~~----   47 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTT--------IPTIG-FNVET------------------------VT----   47 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC--------CCCSS-EEEEE------------------------EE----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCc--------CCcCc-cceEE------------------------EE----
Confidence            3568899999999999999999988765321        01110 00000                        00    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  ....    .  -..+|++++|+|+.....-.. ....+.  ..
T Consensus        48 ----------------~~~~~~~~~Dt~G~~~~~~--~~~~----~--~~~~d~ii~v~d~~~~~s~~~-~~~~~~--~~  100 (171)
T 1upt_A           48 ----------------YKNLKFQVWDLGGLTSIRP--YWRC----Y--YSNTDAVIYVVDSCDRDRIGI-SKSELV--AM  100 (171)
T ss_dssp             ----------------ETTEEEEEEEECCCGGGGG--GGGG----G--CTTCSEEEEEEETTCCTTHHH-HHHHHH--HH
T ss_pred             ----------------ECCEEEEEEECCCChhhhH--HHHH----H--hccCCEEEEEEECCCHHHHHH-HHHHHH--HH
Confidence                            1245789999999877521  1110    1  134699999999876532211 111111  12


Q ss_pred             Hh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       227 ~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +.   ..+.|+++|+||+|+.+.....++.+.+.                     ... -.....+++++||++|.|+++
T Consensus       101 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A          101 LEEEELRKAILVVFANKQDMEQAMTSSEMANSLG---------------------LPA-LKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------GGG-CTTSCEEEEECCTTTCTTHHH
T ss_pred             HhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhC---------------------chh-ccCCceEEEECcCCCCcCHHH
Confidence            22   25799999999999987532211211110                     000 001235799999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          304 YFKAVEESAQE  314 (324)
Q Consensus       304 l~~~i~~~~~~  314 (324)
                      +++.|.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.84  E-value=1.1e-20  Score=161.21  Aligned_cols=166  Identities=17%  Similarity=0.119  Sum_probs=99.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+...+.++       +. ..+...+                       ...  
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t-------~~-~~~~~~~-----------------------~~~--   53 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-------VF-DNFSANV-----------------------AVD--   53 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCS-------SC-CCEEEEE-----------------------ECS--
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCc-------cc-eeEEEEE-----------------------EEC--
Confidence            35688999999999999999999987664322111       10 0000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chh-HHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMT-FMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~-~~~~~~~~  223 (324)
                                      .....+.||||||++++......        .-..+|++++|+|......  ... .|...+  
T Consensus        54 ----------------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~--  107 (212)
T 2j0v_A           54 ----------------GQIVNLGLWDTAGQEDYSRLRPL--------SYRGADIFVLAFSLISKASYENVLKKWMPEL--  107 (212)
T ss_dssp             ----------------SCEEEEEEECCCCCCCCCC--CG--------GGTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred             ----------------CEEEEEEEEECCCcHHHHHHHHh--------hccCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence                            12357889999999876211100        1134689999999865321  111 232211  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHH------HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALE------WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~  297 (324)
                       ... ..+.|+++|+||+|+........      ..+....+              +        ......+++++||++
T Consensus       108 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~--------------~--------~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A          108 -RRF-APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL--------------R--------KQIGAAAYIECSSKT  163 (212)
T ss_dssp             -HHH-CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH--------------H--------HHHTCSEEEECCTTT
T ss_pred             -HHh-CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH--------------H--------HHcCCceEEEccCCC
Confidence             211 13799999999999976532100      00111111              1        112235899999999


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 020549          298 GAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       298 g~gv~~l~~~i~~~~~~~  315 (324)
                      |.||+++|+.|.+.+...
T Consensus       164 g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHhhh
Confidence            999999999999988653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.84  E-value=8.4e-20  Score=157.79  Aligned_cols=175  Identities=17%  Similarity=0.213  Sum_probs=101.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|.+|||||||+++|++..+...             ..++++. ++.                 -+...   
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~-------------~~~~~t~-~~~-----------------~~~~~---   72 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ-------------SYSFTTK-NLY-----------------VGHFD---   72 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE-------------CC------CEE-----------------EEEEE---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-------------CCCCcce-eee-----------------eeeee---
Confidence            4568999999999999999999998755311             1111110 000                 00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh--h-HHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--S-GAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLY  222 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~-~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~  222 (324)
                                      .....+.||||||+.+......  . ...+...  ...+|++++|+|+....... ..+...+ 
T Consensus        73 ----------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~-  133 (228)
T 2qu8_A           73 ----------------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLF-  133 (228)
T ss_dssp             ----------------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHH-
T ss_pred             ----------------cCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHH-
Confidence                            1245789999999854311011  0 1111111  23468999999987653321 2222222 


Q ss_pred             HHHHHhhc--CCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          223 ACSILYKT--RLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       223 ~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                        ..+...  ++|+++|+||+|+........ .......+..                     ......+++++||++|.
T Consensus       134 --~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~SA~~g~  190 (228)
T 2qu8_A          134 --YSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD---------------------NVKNPIKFSSFSTLTGV  190 (228)
T ss_dssp             --HHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH---------------------HCCSCEEEEECCTTTCT
T ss_pred             --HHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH---------------------hcCCCceEEEEecccCC
Confidence              333333  799999999999987543211 1111111110                     11112689999999999


Q ss_pred             ChHHHHHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQEFME  317 (324)
Q Consensus       300 gv~~l~~~i~~~~~~~~~  317 (324)
                      ||+++|+.|.+.+....+
T Consensus       191 gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          191 GVEQAKITACELLKNDQA  208 (228)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998865443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=1.5e-20  Score=158.02  Aligned_cols=174  Identities=15%  Similarity=0.137  Sum_probs=98.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+++|++..+...+.+       +.. ..+...+                       ...  
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~-------t~~-~~~~~~~-----------------------~~~--   62 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVP-------TVF-DHYAVSV-----------------------TVG--   62 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCC-------SSC-CCEEEEE-----------------------ESS--
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccc-ceeEEEE-----------------------EEC--
Confidence            3457899999999999999999998865432211       110 0000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cchh-HHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMT-FMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~-~~~~~~~~  223 (324)
                                      .....+.||||||+.++..  ....      .-..+|++++|+|.....  .... .|...+  
T Consensus        63 ----------------~~~~~~~i~D~~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~--  116 (194)
T 2atx_A           63 ----------------GKQYLLGLYDTAGQEDYDR--LRPL------SYPMTDVFLICFSVVNPASFQNVKEEWVPEL--  116 (194)
T ss_dssp             ----------------SCEEEEEEECCCCSSSSTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred             ----------------CEEEEEEEEECCCCcchhH--HHHH------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence                            1235788999999887621  1100      113468999999986532  1111 232211  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                       ... ..++|+++|+||+|+.......+......       ..     .+..+....+.......+++++||++|.||++
T Consensus       117 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  182 (194)
T 2atx_A          117 -KEY-APNVPFLLIGTQIDLRDDPKTLARLNDMK-------EK-----PICVEQGQKLAKEIGACCYVECSALTQKGLKT  182 (194)
T ss_dssp             -HHH-STTCCEEEEEECTTSTTCHHHHHHHTTTT-------CC-----CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHH
T ss_pred             -HHh-CCCCCEEEEEEChhhcccccchhhccccc-------Cc-----ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHH
Confidence             111 23799999999999987542211111000       00     00000000000112334899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      +|+.|.+.+.
T Consensus       183 l~~~l~~~i~  192 (194)
T 2atx_A          183 VFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.83  E-value=8.6e-21  Score=162.56  Aligned_cols=181  Identities=14%  Similarity=0.077  Sum_probs=99.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+|+|.+|||||||+++|++..+...+.+++       . ..+...+                       ..  
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~--   70 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-------F-ENYTACL-----------------------ET--   70 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------EC--
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee-------e-eeEEEEE-----------------------EE--
Confidence            3456899999999999999999999987654322111       0 0000000                       00  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--c-hhHHHhHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--P-MTFMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~-~~~~~~~~~  222 (324)
                                      ......+.||||||+.++..  ....    .  -..+|++++|+|......  . ...|...+ 
T Consensus        71 ----------------~~~~~~l~i~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i-  125 (214)
T 3q3j_B           71 ----------------EEQRVELSLWDTSGSPYYDN--VRPL----C--YSDSDAVLLCFDISRPETVDSALKKWRTEI-  125 (214)
T ss_dssp             ------------------CEEEEEEEEECCSGGGTT--TGGG----G--CTTCSEEEEEEETTCTHHHHHHHTHHHHHH-
T ss_pred             ----------------CCEEEEEEEEECCCCHhHHH--HHHH----H--cCCCeEEEEEEECcCHHHHHHHHHHHHHHH-
Confidence                            02245788999999887621  1110    0  134689999999875322  1 12332222 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I  301 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v  301 (324)
                        ... ..+.|+++|+||+|+...........      ..  ......    ...+..+.......++++|||++|.| |
T Consensus       126 --~~~-~~~~piilv~nK~Dl~~~~~~~~~~~------~~--~~~~v~----~~~~~~~~~~~~~~~~~e~SA~~g~g~v  190 (214)
T 3q3j_B          126 --LDY-CPSTRVLLIGCKTDLRTDLSTLMELS------HQ--KQAPIS----YEQGCAIAKQLGAEIYLEGSAFTSEKSI  190 (214)
T ss_dssp             --HHH-CTTSEEEEEEECGGGGGCHHHHHHHH------HT--TCCCCC----HHHHHHHHHHHTCSEEEECCTTTCHHHH
T ss_pred             --HHh-CCCCCEEEEEEChhhccchhhhhhhc------cc--ccCccC----HHHHHHHHHHcCCCEEEEeccCCCcccH
Confidence              222 24799999999999975421100000      00  000000    00000000112223899999999998 9


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 020549          302 EAYFKAVEESAQEFMETY  319 (324)
Q Consensus       302 ~~l~~~i~~~~~~~~~~~  319 (324)
                      +++|+.|.+.+.......
T Consensus       191 ~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          191 HSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             HHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHhccCcCC
Confidence            999999999887655443

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.83  E-value=5.1e-21  Score=160.36  Aligned_cols=163  Identities=17%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .++.++|+|+|++|||||||+++|++..+...+.++       .. ..+..                         +.  
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~-------------------------~~--   63 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-------VG-FNMRK-------------------------IT--   63 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-------CS-EEEEE-------------------------EE--
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCC-------Cc-eeEEE-------------------------EE--
Confidence            345688999999999999999999987665322110       00 00000                         00  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-  224 (324)
                                       .....+.||||||+.++..      .....+  ..+|++++|+|+.....- ......+..+ 
T Consensus        64 -----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~s~-~~~~~~~~~~~  117 (188)
T 1zd9_A           64 -----------------KGNVTIKLWDIGGQPRFRS------MWERYC--RGVSAIVYMVDAADQEKI-EASKNELHNLL  117 (188)
T ss_dssp             -----------------ETTEEEEEEEECCSHHHHT------THHHHH--TTCSEEEEEEETTCGGGH-HHHHHHHHHHH
T ss_pred             -----------------eCCEEEEEEECCCCHhHHH------HHHHHH--ccCCEEEEEEECCCHHHH-HHHHHHHHHHH
Confidence                             2256789999999877521      111122  346899999998653211 1111111111 


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~  302 (324)
                      ......++|+++|+||+|+.......++.+.+.                     .   ..  ....+++++||++|.||+
T Consensus       118 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A          118 DKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN---------------------L---SAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             TCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHH
T ss_pred             hCcccCCCCEEEEEECCCCccCCCHHHHHHHhC---------------------h---hhhccCCeeEEEEECCCCCCHH
Confidence            111126799999999999986422111211110                     0   00  123578999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          303 AYFKAVEESAQ  313 (324)
Q Consensus       303 ~l~~~i~~~~~  313 (324)
                      ++|+.|.+.+.
T Consensus       174 ~l~~~l~~~~~  184 (188)
T 1zd9_A          174 ITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.83  E-value=9.4e-21  Score=157.56  Aligned_cols=165  Identities=13%  Similarity=0.174  Sum_probs=99.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+|+|++|||||||+++|++..+...+.+       +.. ..+...                       .... 
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-------t~~-~~~~~~-----------------------~~~~-   62 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP-------TIE-DSYLKH-----------------------TEID-   62 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT-------TCC-EEEEEE-----------------------EEET-
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------Ccc-ceeEEE-----------------------EEeC-
Confidence            34568899999999999999999998765432211       000 000000                       0000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~  223 (324)
                                       .....+.||||||+.++..  ...    ..++  .+|++++|+|.....  .....|...+  
T Consensus        63 -----------------~~~~~l~i~Dt~G~~~~~~--~~~----~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~--  115 (183)
T 3kkq_A           63 -----------------NQWAILDVLDTAGQEEFSA--MRE----QYMR--TGDGFLIVYSVTDKASFEHVDRFHQLI--  115 (183)
T ss_dssp             -----------------TEEEEEEEEECCSCGGGCS--SHH----HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHH--
T ss_pred             -----------------CcEEEEEEEECCCchhhHH--HHH----HHHh--cCCEEEEEEECCCHHHHHHHHHHHHHH--
Confidence                             1134567899999877521  111    1121  258999999987532  2223332222  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc-cCCChH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGIE  302 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~-~g~gv~  302 (324)
                      .......++|+++|+||+|+.+.....  .+....+.+                     . . +.+++++||+ +|.|++
T Consensus       116 ~~~~~~~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A          116 LRVKDRESFPMILVANKVDLMHLRKVT--RDQGKEMAT---------------------K-Y-NIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             HHHHTSSCCCEEEEEECTTCSTTCCSC--HHHHHHHHH---------------------H-H-TCCEEEEBCSSSCBSHH
T ss_pred             HHhcCCCCCcEEEEEECCCchhccCcC--HHHHHHHHH---------------------H-h-CCeEEEeccCCCCCCHH
Confidence            122334679999999999997632210  011111111                     1 1 3789999999 999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQE  314 (324)
Q Consensus       303 ~l~~~i~~~~~~  314 (324)
                      ++|..|.+.+.+
T Consensus       171 ~l~~~l~~~i~~  182 (183)
T 3kkq_A          171 KTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=158.21  Aligned_cols=165  Identities=15%  Similarity=0.187  Sum_probs=101.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+......       +.     +......                  .+...  
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~-----~~~~~~~------------------~~~~~--   61 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS-------TI-----GVDFKIR------------------TIELD--   61 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCC-------CS-----SEEEEEE------------------EEEET--
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-------cc-----cceEEEE------------------EEEEC--
Confidence            3457899999999999999999998766532211       00     0000000                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..  .    ....+  ..+|++++|+|..+...  ....|   +..+
T Consensus        62 ----------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~i  114 (196)
T 3tkl_A           62 ----------------GKTIKLQIWDTAGQERFRT--I----TSSYY--RGAHGIIVVYDVTDQESFNNVKQW---LQEI  114 (196)
T ss_dssp             ----------------TEEEEEEEEEECCSGGGCT--T----HHHHH--TTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             ----------------CEEEEEEEEECCCcHhhhh--h----HHHHH--hhCCEEEEEEECcCHHHHHHHHHH---HHHH
Confidence                            1135789999999877521  1    11122  34689999999876321  11223   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++|+||+|+........  .....+.                      . ..+.+++++||++|.|++++
T Consensus       115 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A          115 DRYASENVNKLLVGNKCDLTTKKVVDY--TTAKEFA----------------------D-SLGIPFLETSAKNATNVEQS  169 (196)
T ss_dssp             HHHSCTTCEEEEEEECTTCTTTCCSCH--HHHHHHH----------------------H-HTTCCEEEECTTTCTTHHHH
T ss_pred             HHhcCCCCCEEEEEECcccccccccCH--HHHHHHH----------------------H-HcCCcEEEEeCCCCCCHHHH
Confidence            333345799999999999976532210  0111111                      1 12468999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |..|.+.+...
T Consensus       170 ~~~l~~~i~~~  180 (196)
T 3tkl_A          170 FMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.83  E-value=6.2e-21  Score=157.88  Aligned_cols=166  Identities=13%  Similarity=0.133  Sum_probs=99.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+++|++|||||||+++|++..+...+.              .++......                 .+...  
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~~~-----------------~~~~~--   53 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD--------------PTIEDSYTK-----------------ICSVD--   53 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC--------------TTCCEEEEE-----------------EEEET--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccC--------------CCcCceEEE-----------------EEEEC--
Confidence            356789999999999999999999875543211              111000000                 00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..  .. .   ..+.  .+|++++|+|.....  .....|...+  +
T Consensus        54 ----------------~~~~~~~~~Dt~G~~~~~~--~~-~---~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~--~  107 (181)
T 2fn4_A           54 ----------------GIPARLDILDTAGQEEFGA--MR-E---QYMR--AGHGFLLVFAINDRQSFNEVGKLFTQI--L  107 (181)
T ss_dssp             ----------------TEEEEEEEEECCCTTTTSC--CH-H---HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--H
T ss_pred             ----------------CEEEEEEEEECCCchhhHH--HH-H---HHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHH--H
Confidence                            1135788999999887521  11 1   1121  258899999986532  1122222111  1


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++|+||+|+.+.....  ......+.                      . ..+.+++++||++|.|++++
T Consensus       108 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A          108 RVKDRDDFPVVLVGNKADLESQRQVP--RSEASAFG----------------------A-SHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             HHHTSSCCCEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECBTTTTBSHHHH
T ss_pred             HhcCCCCCCEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCeEEEecCCCCCCHHHH
Confidence            23334679999999999997643210  00111110                      0 12468999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFM  316 (324)
Q Consensus       305 ~~~i~~~~~~~~  316 (324)
                      ++.|.+.+....
T Consensus       163 ~~~l~~~~~~~~  174 (181)
T 2fn4_A          163 FEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999886543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.83  E-value=2.7e-20  Score=154.84  Aligned_cols=158  Identities=19%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+..+|+++|.+|||||||+++|++..+..    ..    ++.. ....                        .+.   
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----~~----~t~~-~~~~------------------------~~~---   61 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVH----TS----PTIG-SNVE------------------------EIV---   61 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEE----EE----CCSS-SSCE------------------------EEE---
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCc----cC----CcCc-eeeE------------------------EEE---
Confidence            4567899999999999999999999876511    00    0010 0000                        000   


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       ..+..+.||||||+.++..  ...    ..+  ..+|++++|+|+.....-.. ....+.  .
T Consensus        62 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~d~ii~v~D~~~~~s~~~-~~~~~~--~  113 (181)
T 2h17_A           62 -----------------INNTRFLMWDIGGQESLRS--SWN----TYY--TNTEFVIVVVDSTDRERISV-TREELY--K  113 (181)
T ss_dssp             -----------------ETTEEEEEEEESSSGGGTC--GGG----GGG--TTCCEEEEEEETTCTTTHHH-HHHHHH--H
T ss_pred             -----------------ECCEEEEEEECCCCHhHHH--HHH----HHh--ccCCEEEEEEECCCHHHHHH-HHHHHH--H
Confidence                             1246789999999877521  111    111  34699999999876532211 111111  1


Q ss_pred             HHh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCC
Q 020549          226 ILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAG  300 (324)
Q Consensus       226 ~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~g  300 (324)
                      .+.   ..++|+++|+||+|+.......++.+.+.                     .   ..  ....+++++||++|.|
T Consensus       114 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A          114 MLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK---------------------L---TSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             HHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECBTTTTBT
T ss_pred             HHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhC---------------------c---ccccCCceEEEEccCCCCcC
Confidence            122   36799999999999976421111111110                     0   00  1134799999999999


Q ss_pred             hHHHHHHHHHH
Q 020549          301 IEAYFKAVEES  311 (324)
Q Consensus       301 v~~l~~~i~~~  311 (324)
                      ++++|+.|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.83  E-value=9.4e-21  Score=159.13  Aligned_cols=167  Identities=17%  Similarity=0.210  Sum_probs=99.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+......+       . ...+..    ..                  +...  
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t-------~-~~~~~~----~~------------------~~~~--   70 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT-------I-GVEFST----RT------------------VMLG--   70 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCC-------S-SEEEEE----EE------------------EEET--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-------c-ceeEEE----EE------------------EEEC--
Confidence            34588999999999999999999998765322110       0 000000    00                  0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  .    ....+  ..+|++++|+|........ ....++..+..
T Consensus        71 ----------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~vi~v~D~~~~~s~~-~~~~~l~~i~~  125 (193)
T 2oil_A           71 ----------------TAAVKAQIWDTAGLERYRA--I----TSAYY--RGAVGALLVFDLTKHQTYA-VVERWLKELYD  125 (193)
T ss_dssp             ----------------TEEEEEEEEEESCCCTTCT--T----HHHHH--TTCCEEEEEEETTCHHHHH-THHHHHHHHHT
T ss_pred             ----------------CEEEEEEEEeCCCchhhhh--h----hHHHh--ccCCEEEEEEECCCHHHHH-HHHHHHHHHHH
Confidence                            1245788999999877521  1    11112  3468999999986532111 11111221122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......  ......+.                      . ..+.+++++||++|.|++++|.
T Consensus       126 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          126 HAEATIVVMLVGNKSDLSQAREVP--TEEARMFA----------------------E-NNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             TSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEEECTTTCTTHHHHHH
T ss_pred             hcCCCCeEEEEEECCCcccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHH
Confidence            223578999999999997542210  01111111                      1 1246899999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          307 AVEESAQEF  315 (324)
Q Consensus       307 ~i~~~~~~~  315 (324)
                      .|.+.+.+.
T Consensus       181 ~l~~~i~~~  189 (193)
T 2oil_A          181 TVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.83  E-value=2.1e-20  Score=156.18  Aligned_cols=166  Identities=22%  Similarity=0.242  Sum_probs=100.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||+++|++..+...       ..++++.....                        +.+.    
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-------~~~~~t~~~~~------------------------~~~~----   50 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-------NWPGVTVEKKE------------------------GEFE----   50 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-------ECTTSCCEEEE------------------------EEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc-------CCCCeeccceE------------------------EEEE----
Confidence            457899999999999999999998643211       01111100000                        0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     ..+..+.||||||+.++............++....+|++++++|... +.....|      +..+
T Consensus        51 ---------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~------~~~~  108 (188)
T 2wjg_A           51 ---------------YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-LERNLYL------TLQL  108 (188)
T ss_dssp             ---------------ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-HHHHHHH------HHHH
T ss_pred             ---------------eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-HHHHHHH------HHHH
Confidence                           12457899999999876321111111222333345789999999864 1111112      2334


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......   .....+.+                     .  .+.+++++||++|.|++++|+.
T Consensus       109 ~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~~~  162 (188)
T 2wjg_A          109 MEMGANLLLALNKMDLAKSLGIE---IDVDKLEK---------------------I--LGVKVVPLSAAKKMGIEELKKA  162 (188)
T ss_dssp             HTTTCCEEEEEECHHHHHHTTCC---CCHHHHHH---------------------H--HTSCEEECBGGGTBSHHHHHHH
T ss_pred             HhcCCCEEEEEEhhhccccccch---HHHHHHHH---------------------H--hCCCeEEEEecCCCCHHHHHHH
Confidence            45689999999999986432111   11111111                     1  1368999999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          308 VEESAQEFM  316 (324)
Q Consensus       308 i~~~~~~~~  316 (324)
                      |.+.+....
T Consensus       163 i~~~~~~~~  171 (188)
T 2wjg_A          163 ISIAVKDKK  171 (188)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHhcc
Confidence            999886654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.83  E-value=4.4e-21  Score=158.67  Aligned_cols=162  Identities=16%  Similarity=0.225  Sum_probs=96.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+.+|+|+|++|||||||+|+|++..+..            +...+.++ .+..                 .+.+.    
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------~~~~~~~t-~~~~-----------------~~~~~----   48 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTT-RDVL-----------------REHIH----   48 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCC-CSCE-----------------EEEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcce------------eeCCCCce-ecee-----------------eEEEE----
Confidence            56789999999999999999999875431            12222221 0000                 00000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCch-hHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPM-TFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~  225 (324)
                                     ..+..+.+|||||+.++..... ...+.+.+. -..+|++++|+|+....... ..|...+   .
T Consensus        49 ---------------~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~---~  109 (172)
T 2gj8_A           49 ---------------IDGMPLHIIDTAGLREASDEVE-RIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEF---I  109 (172)
T ss_dssp             ---------------ETTEEEEEEECCCCSCCSSHHH-HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHH---H
T ss_pred             ---------------ECCeEEEEEECCCcccchhHHH-HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---H
Confidence                           1134688999999976421110 001111111 13578999999987654322 2232222   2


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+.....      .+.                         . ....+++++||++|.|++++|
T Consensus       110 ~~~~~~~p~ilv~NK~Dl~~~~~------~~~-------------------------~-~~~~~~~~~SA~~g~gv~~l~  157 (172)
T 2gj8_A          110 ARLPAKLPITVVRNKADITGETL------GMS-------------------------E-VNGHALIRLSARTGEGVDVLR  157 (172)
T ss_dssp             HHSCTTCCEEEEEECHHHHCCCC------EEE-------------------------E-ETTEEEEECCTTTCTTHHHHH
T ss_pred             HhcccCCCEEEEEECccCCcchh------hhh-------------------------h-ccCCceEEEeCCCCCCHHHHH
Confidence            22234699999999999854210      000                         0 123579999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+..
T Consensus       158 ~~l~~~~~~  166 (172)
T 2gj8_A          158 NHLKQSMGF  166 (172)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHhhh
Confidence            999887643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.83  E-value=1.7e-20  Score=158.97  Aligned_cols=173  Identities=14%  Similarity=0.174  Sum_probs=98.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|.+|||||||+++|++..+...+.++       .. ..+..                       .+...   
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~-----------------------~~~~~---   69 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VF-ENYIA-----------------------DIEVD---   69 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCS-------SC-CCCEE-----------------------EEEET---
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCc-------cc-ceEEE-----------------------EEEEC---
Confidence            4578999999999999999999987665322110       00 00000                       00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cch-hHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPM-TFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~-~~~~~~~~~~  224 (324)
                                     .....+.||||||+.++......        .-..+|++++|+|.....  ... ..|...+   
T Consensus        70 ---------------~~~~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~---  123 (201)
T 2gco_A           70 ---------------GKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSIDSPDSLENIPEKWTPEV---  123 (201)
T ss_dssp             ---------------TEEEEEEEECCCCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred             ---------------CEEEEEEEEECCCchhHHHHHHH--------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---
Confidence                           12357889999998775211110        113468999999986532  111 1232211   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .. ...+.|+++|+||+|+.......+......       ..     .+..+.+..+.......+++++||++|.||+++
T Consensus       124 ~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  190 (201)
T 2gco_A          124 KH-FCPNVPIILVGNKKDLRQDEHTRRELAKMK-------QE-----PVRSEEGRDMANRISAFGYLECSAKTKEGVREV  190 (201)
T ss_dssp             HH-HSTTCCEEEEEECGGGTTCHHHHHHHHTTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HH-hCCCCCEEEEEecHHhhcCccchhhhcccc-------cC-----cCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHH
Confidence            11 123799999999999987643222211100       00     000000000111123347999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      |+.|.+.+.
T Consensus       191 ~~~i~~~~l  199 (201)
T 2gco_A          191 FEMATRAGL  199 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=152.53  Aligned_cols=165  Identities=13%  Similarity=0.101  Sum_probs=88.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|++|||||||+++|++..+.....      .++.+.....                         +...   
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~------~~~~~~~~~~-------------------------~~~~---   48 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE------QLGEDVYERT-------------------------LTVD---   48 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC------CSSSSEEEEE-------------------------EEET---
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC------ccccceeEEE-------------------------EEEC---
Confidence            45789999999999999999999876543110      0001000000                         0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..     ..+... ....+|++++|+|.....  .....|...+   .
T Consensus        49 ---------------~~~~~~~~~D~~g~~~~~~-----~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l---~  104 (175)
T 2nzj_A           49 ---------------GEDTTLVVVDTWEAEKLDK-----SWSQES-CLQGGSAYVIVYSIADRGSFESASELRIQL---R  104 (175)
T ss_dssp             ---------------TEEEEEEEECCC------------CHHHHH-TTTSCSEEEEEEETTCHHHHHHHHHHHHHH---H
T ss_pred             ---------------CEEEEEEEEecCCCCccch-----hhhHHh-hcccCCEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence                           1234788999999876310     011111 113467888888875422  1222222111   1


Q ss_pred             HH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 IL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .. ...++|+++|+||+|+.+.....  .+....+..                     .  .+.+++++||++|.|++++
T Consensus       105 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A          105 RTHQADHVPIILVGNKADLARCREVS--VEEGRACAV---------------------V--FDCKFIETSATLQHNVAEL  159 (175)
T ss_dssp             HCC----CCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--HTSEEEECBTTTTBSHHHH
T ss_pred             HhhccCCCCEEEEEEChhhccccccC--HHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHH
Confidence            11 12479999999999997643210  001111110                     1  1368999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |+.|.+.+...
T Consensus       160 ~~~l~~~~~~~  170 (175)
T 2nzj_A          160 FEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.83  E-value=9.6e-21  Score=156.45  Aligned_cols=165  Identities=19%  Similarity=0.231  Sum_probs=98.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|.+|||||||+++|++..+......       +. ...+..    .                  .+...  
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~----~------------------~~~~~--   60 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-------TI-GVEFGT----R------------------IIEVS--   60 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTT-------SC-CCCEEE----E------------------EEEET--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------cc-ceEEEE----E------------------EEEEC--
Confidence            3468899999999999999999998765432100       00 000000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..      .....+  ..+|++++|+|+....... ....++..+..
T Consensus        61 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~  115 (179)
T 1z0f_A           61 ----------------GQKIKLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRRSTYN-HLSSWLTDARN  115 (179)
T ss_dssp             ----------------TEEEEEEEEECTTGGGTCH------HHHHHH--HTCSEEEEEEETTCHHHHH-THHHHHHHHHH
T ss_pred             ----------------CeEEEEEEEECCCChHhhh------hHHHHh--ccCCEEEEEEeCcCHHHHH-HHHHHHHHHHH
Confidence                            1245789999999876521      112222  2468999999987642111 11112222233


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.|++++|.
T Consensus       116 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A          116 LTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAE---------------------E--NGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHHH
T ss_pred             hcCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence            344679999999999996532210  011111111                     1  246899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|.+.+.
T Consensus       171 ~l~~~i~  177 (179)
T 1z0f_A          171 EAAKKIY  177 (179)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9988763

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=158.87  Aligned_cols=178  Identities=14%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+++|++|||||||+++|++..+...+.++       . ...+...+                       ... 
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t-------~-~~~~~~~~-----------------------~~~-   64 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-------A-FDNFSAVV-----------------------SVD-   64 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CC-------S-SEEEEEEE-----------------------EET-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-------c-cceeEEEE-----------------------EEC-
Confidence            456789999999999999999999987654322111       1 00000000                       000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh---HHHhHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT---FMSNMLY  222 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~---~~~~~~~  222 (324)
                                       .....+.||||||++++..  ...    ..  -..+|++++|+|.........   .|...+ 
T Consensus        65 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~-  118 (201)
T 2q3h_A           65 -----------------GRPVRLQLCDTAGQDEFDK--LRP----LC--YTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-  118 (201)
T ss_dssp             -----------------TEEEEEEEEECCCSTTCSS--SGG----GG--GTTCSEEEEEEETTCHHHHHHHHHTHHHHH-
T ss_pred             -----------------CEEEEEEEEECCCCHHHHH--HhH----hh--cCCCcEEEEEEECCCHHHHHHHHHHHHHHH-
Confidence                             1134678999999987621  110    01  134689999999865321111   232211 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                        ... ..+.|+++|+||+|+.............      .  ......    +....+.......+++++||++|.||+
T Consensus       119 --~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~------~--~~~v~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~  183 (201)
T 2q3h_A          119 --RCH-CPKAPIILVGTQSDLREDVKVLIELDKC------K--EKPVPE----EAAKLLAEEIKAASYIECSALTQKNLK  183 (201)
T ss_dssp             --HHH-CSSSCEEEEEECGGGGGCHHHHHHHHTT------T--CCCCCH----HHHHHHHHHHTCSEEEECCTTTCTTHH
T ss_pred             --HHh-CCCCCEEEEEECHhhhhchhhhhhhccc------c--cccCCH----HHHHHHHHhcCCcEEEEEecCCCCCHH
Confidence              211 2379999999999997643211110000      0  000000    000001112233489999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEFM  316 (324)
Q Consensus       303 ~l~~~i~~~~~~~~  316 (324)
                      ++|+.|.+.+.+..
T Consensus       184 ~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          184 EVFDAAIVAGIQYS  197 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999886544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.83  E-value=2.4e-21  Score=160.92  Aligned_cols=167  Identities=17%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|++|||||||+++|++..+...+..       +. ...+...                       +...   
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~---   50 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDP-------TI-ENTFTKL-----------------------ITVN---   50 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCT-------TC-CEEEEEE-----------------------EEET---
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-------Cc-cccEEEE-----------------------EEEC---
Confidence            457899999999999999999997765432110       00 0000000                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||++++..  ....      ....+|++++|+|.....  .....|...+  ..
T Consensus        51 ---------------~~~~~~~l~Dt~G~~~~~~--~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~  105 (181)
T 3t5g_A           51 ---------------GQEYHLQLVDTAGQDEYSI--FPQT------YSIDINGYILVYSVTSIKSFEVIKVIHGKL--LD  105 (181)
T ss_dssp             ---------------TEEEEEEEEECCCCCTTCC--CCGG------GTTTCSEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred             ---------------CEEEEEEEEeCCCchhhhH--HHHH------HHhcCCEEEEEEECCCHHHHHHHHHHHHHH--HH
Confidence                           1235678999999887621  1110      012368999999986522  1122222111  12


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.|++++|
T Consensus       106 ~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A          106 MVGKVQIPIMLVGNKKDLHMERVIS--YEEGKALAE---------------------S--WNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             HC----CCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTSHHHHHHHH
T ss_pred             hcCCCCCCEEEEEECccchhcceec--HHHHHHHHH---------------------H--hCCcEEEEecCCCCCHHHHH
Confidence            2234579999999999996543210  011111111                     1  14689999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 020549          306 KAVEESAQEFMET  318 (324)
Q Consensus       306 ~~i~~~~~~~~~~  318 (324)
                      ..|.+.+......
T Consensus       161 ~~l~~~~~~~~~~  173 (181)
T 3t5g_A          161 RRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHhcCC
Confidence            9999988764443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.83  E-value=1.1e-20  Score=156.69  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=98.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+++|++..+......+       .. ..+..    .                  .+...  
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~-~~~~~----~------------------~~~~~--   57 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQEST-------IG-AAFFS----Q------------------TLAVN--   57 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCC-------SC-CSEEE----E------------------EEEET--
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCC-------ce-eEEEE----E------------------EEEEC--
Confidence            34578999999999999999999987665321110       00 00000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  ..    ...+  ..+|++++|+|+...... .....++..+..
T Consensus        58 ----------------~~~~~~~i~Dt~G~~~~~~--~~----~~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~  112 (181)
T 2efe_B           58 ----------------DATVKFEIWDTAGQERYHS--LA----PMYY--RGAAAAIIVFDVTNQASF-ERAKKWVQELQA  112 (181)
T ss_dssp             ----------------TEEEEEEEEECCCSGGGGG--GT----HHHH--TTCSEEEEEEETTCHHHH-HHHHHHHHHHHH
T ss_pred             ----------------CEEEEEEEEeCCCChhhhh--hh----HHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHHH
Confidence                            1245789999999877521  11    1112  346899999998653211 111111222222


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......  .+....+.+                       ..+.+++++||++|.|+++++.
T Consensus       113 ~~~~~~p~i~v~nK~Dl~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B          113 QGNPNMVMALAGNKSDLLDARKVT--AEDAQTYAQ-----------------------ENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             HSCTTCEEEEEEECTTCTTTCCSC--HHHHHHHHH-----------------------HTTCEEEECCSSSCTTHHHHHH
T ss_pred             hcCCCCcEEEEEECCcccccccCC--HHHHHHHHH-----------------------HcCCEEEEEECCCCCCHHHHHH
Confidence            223478999999999997643210  011111111                       1246899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.+..
T Consensus       168 ~l~~~~~~  175 (181)
T 2efe_B          168 EIARRLPR  175 (181)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.83  E-value=5e-20  Score=154.60  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch--hHHHhHHHHHHHH--hhcCCCeEEEeec
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM--TFMSNMLYACSIL--YKTRLPLVLAFNK  240 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~--~~~~~~~~~~~~~--~~~~~p~ilv~NK  240 (324)
                      ...+.||||||++++..      .....+  ..+|++++|+|........  ..+..+...+..+  ...++|+++|+||
T Consensus        73 ~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK  144 (198)
T 3t1o_A           73 KTRFHLYTVPGQVFYNA------SRKLIL--RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK  144 (198)
T ss_dssp             EEEEEEEECCSCCSCSH------HHHHHT--TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred             ceEEEEEeCCChHHHHH------HHHHHH--hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence            45789999999887621      111112  3469999999997432111  1222222212222  1257999999999


Q ss_pred             cccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       241 ~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                      +|+.......+    ...+.                      ......+++++||++|.|++++|+.|.+.+...
T Consensus       145 ~Dl~~~~~~~~----~~~~~----------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          145 RDLPDALPVEM----VRAVV----------------------DPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             TTSTTCCCHHH----HHHHH----------------------CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             hhcccccCHHH----HHHHH----------------------HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            99976421111    11111                      111223899999999999999999999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.83  E-value=1.3e-20  Score=178.35  Aligned_cols=173  Identities=16%  Similarity=0.213  Sum_probs=104.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+|+|++..+..            +...++++    ++.+              ...+.   
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------~~~~~gtT----~d~~--------------~~~~~---  219 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT---  219 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------EC-------------C--------------CEEEE---
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------ecCCCCce----eeee--------------EEEEE---
Confidence            356899999999999999999999876531            22222222    1000              00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-h-hHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-A-SGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~-~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                      ..+..+.||||||+.++.... . ......+.+ .-..+|++++|+|+.++...++.     ..
T Consensus       220 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-----~~  278 (436)
T 2hjg_A          220 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-----RI  278 (436)
T ss_dssp             ----------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-----HH
T ss_pred             ----------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-----HH
Confidence                            124468999999985531100 0 011111111 11236899999999988766552     12


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                      +..+...++|+|+|+||+|+.+....  .+..+.+.   +.              +     .+..+.+++++||++|.|+
T Consensus       279 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~~--------------l-----~~~~~~~~~~~SA~tg~~v  336 (436)
T 2hjg_A          279 AGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR---DH--------------F-----QFLDYAPILFMSALTKKRI  336 (436)
T ss_dssp             HHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH---HH--------------C-----GGGTTSCEEECCTTTCTTG
T ss_pred             HHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH---Hh--------------c-----ccCCCCCEEEEecccCCCH
Confidence            23444578999999999999875321  11211111   11              0     1234679999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQEF  315 (324)
Q Consensus       302 ~~l~~~i~~~~~~~  315 (324)
                      +++|+.+.+.+...
T Consensus       337 ~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          337 HTLMPAIIKASENH  350 (436)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.3e-20  Score=158.84  Aligned_cols=173  Identities=15%  Similarity=0.173  Sum_probs=97.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|.+|||||||+++|++..+...+.+++.      ..+  ...                       +...   
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~------~~~--~~~-----------------------~~~~---   69 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVF------ENY--VAD-----------------------IEVD---   69 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------C------CEE--EEE-----------------------EEET---
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCccc------ceE--EEE-----------------------EEEC---
Confidence            357899999999999999999999876543222110      000  000                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cch-hHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPM-TFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~-~~~~~~~~~~  224 (324)
                                     .....+.||||||+.++......        .-..+|++++|+|.....  ... ..|...+   
T Consensus        70 ---------------~~~~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~---  123 (207)
T 2fv8_A           70 ---------------GKQVELALWDTAGQEDYDRLRPL--------SYPDTDVILMCFSVDSPDSLENIPEKWVPEV---  123 (207)
T ss_dssp             ---------------TEEEEEEEEECTTCTTCTTTGGG--------GCTTCCEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred             ---------------CEEEEEEEEECCCcHHHHHHHHh--------hcCCCCEEEEEEECCCHHHHHHHHHHHHHHH---
Confidence                           12357889999998776211100        113468999999986532  111 1232211   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .. ...++|+++|+||+|+.......+....+.       ..     .+....+..+.......+++++||++|.||+++
T Consensus       124 ~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~-----~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el  190 (207)
T 2fv8_A          124 KH-FCPNVPIILVANKKDLRSDEHVRTELARMK-------QE-----PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV  190 (207)
T ss_dssp             HH-HSTTCCEEEEEECGGGGGCHHHHHHHHHTT-------CC-----CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             HH-hCCCCCEEEEEEchhhhccccchhhhhhcc-------cC-----CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHH
Confidence            11 123799999999999986543222211110       00     000000110111122348999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      |+.|.+.+.
T Consensus       191 ~~~l~~~i~  199 (207)
T 2fv8_A          191 FETATRAAL  199 (207)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.83  E-value=8.3e-21  Score=154.93  Aligned_cols=160  Identities=14%  Similarity=0.182  Sum_probs=93.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|++..+...+.+       +. ...+...                       +...    
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~----   48 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-------TK-ADSYRKK-----------------------VVLD----   48 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT-------TC-CEEEEEE-----------------------EEET----
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCC-------Cc-ceEEEEE-----------------------EEEC----
Confidence            47899999999999999999998765432110       00 0000000                       0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..      .....+.  .+|++++|+|......  ....|   +..+..
T Consensus        49 --------------~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~  103 (168)
T 1u8z_A           49 --------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADF---REQILR  103 (168)
T ss_dssp             --------------TEEEEEEEEECCC---CHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHH---HHHHHH
T ss_pred             --------------CEEEEEEEEECCCcchhHH------HHHHHhh--cCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence                          1235788999999877521      1112222  2589999999865321  11222   211122


Q ss_pred             H-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          227 L-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      . ...++|+++|+||+|+.+.....  .+....+.+                     .  .+.+++++||++|.|++++|
T Consensus       104 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~  158 (168)
T 1u8z_A          104 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAD---------------------Q--WNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             HHCCTTSCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHH
T ss_pred             hcCCCCCcEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHH
Confidence            2 22479999999999997543210  011111110                     1  13689999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      +.|.+.+.
T Consensus       159 ~~l~~~i~  166 (168)
T 1u8z_A          159 FDLMREIR  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.83  E-value=1.3e-20  Score=154.04  Aligned_cols=160  Identities=13%  Similarity=0.111  Sum_probs=85.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+++|++..+....            ..+.++ .. .                  .+...    
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~------------~~~~~~-~~-~------------------~~~~~----   45 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA------------EAAGHT-YD-R------------------SIVVD----   45 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------------------CE-EE-E------------------EEEET----
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC------------Cccccc-eE-E------------------EEEEC----
Confidence            468999999999999999999876543211            000010 00 0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||||+.++..  .    ....+  ..+|++++|+|.....  .....|...+.  ..
T Consensus        46 --------------~~~~~~~i~D~~g~~~~~~--~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~--~~  101 (166)
T 3q72_A           46 --------------GEEASLMVYDIWEQDGGRW--L----PGHCM--AMGDAYVIVYSVTDKGSFEKASELRVQLR--RA  101 (166)
T ss_dssp             --------------TEEEEEEEEECC-----------------------CCEEEEEEETTCHHHHHHHHHHHHHHH--HC
T ss_pred             --------------CEEEEEEEEECCCCccchh--h----hhhhh--hhCCEEEEEEECCCHHHHHHHHHHHHHHH--Hh
Confidence                          2245788999999877521  1    11111  2357888888876432  11222211110  11


Q ss_pred             HhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ....++|+++|+||+|+.+.... .+....+.                         . ..+.+++++||++|.|++++|
T Consensus       102 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------------------------~-~~~~~~~~~Sa~~~~gi~~l~  155 (166)
T 3q72_A          102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACA-------------------------V-VFDCKFIETSAALHHNVQALF  155 (166)
T ss_dssp             C---CCCEEEEEECTTCCSSCCSCHHHHHHHH-------------------------H-HTTCEEEECBGGGTBSHHHHH
T ss_pred             cCCCCCCEEEEEeccccccccccCHHHHHHHH-------------------------H-HhCCcEEEeccCCCCCHHHHH
Confidence            12357999999999999764321 11111110                         1 124789999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+..
T Consensus       156 ~~l~~~~~~  164 (166)
T 3q72_A          156 EGVVRQIRL  164 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.83  E-value=9.8e-21  Score=157.51  Aligned_cols=165  Identities=14%  Similarity=0.189  Sum_probs=98.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+|+|++|||||||+++|++..+...+..       +. ...+...                       +...   
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~---   62 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-------TK-ADSYRKK-----------------------VVLD---   62 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCT-------TC-CEEEEEE-----------------------EEET---
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCC-------cc-ceEEEEE-----------------------EEEC---
Confidence            457899999999999999999998765432110       00 0000000                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..      .....+.  .+|++++|+|......  ....|...+  ..
T Consensus        63 ---------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~  117 (187)
T 2a9k_A           63 ---------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADFREQI--LR  117 (187)
T ss_dssp             ---------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred             ---------------CEEEEEEEEECCCCcccHH------HHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHH--HH
Confidence                           1134788999999877521      1112222  2589999999865321  112222111  11


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+.+.....  .+....+.+                     .  .+.+++++||++|.|++++|
T Consensus       118 ~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A          118 VKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q--WNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             HHCCTTCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHH
T ss_pred             hcCCCCCCEEEEEECccccccCccC--HHHHHHHHH---------------------H--cCCeEEEeCCCCCCCHHHHH
Confidence            2222479999999999997542210  011111111                     1  14689999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          306 KAVEESAQEFM  316 (324)
Q Consensus       306 ~~i~~~~~~~~  316 (324)
                      ..|.+.+....
T Consensus       173 ~~l~~~i~~~~  183 (187)
T 2a9k_A          173 FDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999886543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.83  E-value=2.3e-20  Score=157.96  Aligned_cols=166  Identities=14%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+++|++..+......+       . ...+..    .                  .+...   
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~-~~~~~~----~------------------~~~~~---   53 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVST-------V-GIDFKV----K------------------TIYRN---   53 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCC-------C-SEEEEE----E------------------EEEET---
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc-------c-ceeEEE----E------------------EEEEC---
Confidence            4578999999999999999999988765322110       0 000000    0                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.++..      .....+  ..+|++++|+|+...... .....++..+...
T Consensus        54 ---------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~  109 (203)
T 1zbd_A           54 ---------------DKRIKLQIWDTAGLERYRT------ITTAYY--RGAMGFILMYDITNEESF-NAVQDWSTQIKTY  109 (203)
T ss_dssp             ---------------TEEEEEEEEEECCSGGGHH------HHHTTG--GGCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred             ---------------CeEEEEEEEECCCchhhcc------hHHHhh--cCCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence                           1245789999999876521      111111  346899999998653211 1111112222222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.+                     . + +.+++++||++|.|++++|+.
T Consensus       110 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A          110 SWDNAQVLLVGNKCDMEDERVVS--SERGRQLAD---------------------H-L-GFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             SCSSCEEEEEEECTTCTTSCCSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSSHHHHHH
T ss_pred             cCCCCCEEEEEECcccCcccccC--HHHHHHHHH---------------------H-C-CCeEEEEECCCCCCHHHHHHH
Confidence            23579999999999997643210  011111111                     1 1 368999999999999999999


Q ss_pred             HHHHHHHH
Q 020549          308 VEESAQEF  315 (324)
Q Consensus       308 i~~~~~~~  315 (324)
                      |.+.+.+.
T Consensus       165 l~~~i~~~  172 (203)
T 1zbd_A          165 LVDVICEK  172 (203)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.83  E-value=9.9e-21  Score=160.15  Aligned_cols=171  Identities=15%  Similarity=0.148  Sum_probs=89.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+++|++..+.. +       .++....                          .+.+.   
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~-------~~t~~~~--------------------------~~~~~---   65 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-H-------VPTLHPT--------------------------SEELT---   65 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--------------CCCCCS--------------------------CEEEE---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-c-------CCCCCce--------------------------eEEEE---
Confidence            356789999999999999999998865431 0       0111000                          00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      ..+..+.+|||||++++..  ...    .++  ..+|++++|+|+.....  ....|...+  +
T Consensus        66 ----------------~~~~~l~i~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~~--~  119 (198)
T 1f6b_A           66 ----------------IAGMTFTTFDLGGHIQARR--VWK----NYL--PAINGIVFLVDCADHERLLESKEELDSL--M  119 (198)
T ss_dssp             ----------------ETTEEEEEEEECC----CC--GGG----GGG--GGCSEEEEEEETTCGGGHHHHHHHHHHH--H
T ss_pred             ----------------ECCEEEEEEECCCcHhhHH--HHH----HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHH--H
Confidence                            1246789999999877521  110    111  23689999999875421  112221111  0


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccch-hhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYT-STLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      ......++|+++|+||+|+.......+    +.............. ..+.+       ......++++|||++|.||++
T Consensus       120 ~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~SA~~g~gv~~  188 (198)
T 1f6b_A          120 TDETIANVPILILGNKIDRPEAISEER----LREMFGLYGQTTGKGSVSLKE-------LNARPLEVFMCSVLKRQGYGE  188 (198)
T ss_dssp             TCGGGTTSCEEEEEECTTSTTCCCHHH----HHHHHTCTTTCCCSSCCCTTT-------CCSCCEEEEECBTTTTBSHHH
T ss_pred             hCcccCCCcEEEEEECCCccccCCHHH----HHHHhCccccccccccccccc-------ccCceEEEEEEECCCCCCHHH
Confidence            111235799999999999975211111    111110000000000 00000       001246799999999999999


Q ss_pred             HHHHHHHH
Q 020549          304 YFKAVEES  311 (324)
Q Consensus       304 l~~~i~~~  311 (324)
                      +|+.|.+.
T Consensus       189 l~~~l~~~  196 (198)
T 1f6b_A          189 GFRWMAQY  196 (198)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.83  E-value=1.6e-20  Score=153.87  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=88.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+........     +.......                         +...     
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-----~~~~~~~~-------------------------~~~~-----   47 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN-----SEDTYERR-------------------------IMVD-----   47 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC-----------------CEEEEE-------------------------EEET-----
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccCCC-----cCCeeeEE-------------------------EEEC-----
Confidence            679999999999999999998765543211110     00000000                         0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||+.++..  .....   .++  .+|++++|+|....  +.....|...+  ....
T Consensus        48 -------------~~~~~~~i~D~~g~~~~~~--~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~  105 (169)
T 3q85_A           48 -------------KEEVTLIVYDIWEQGDAGG--WLQDH---CLQ--TGDAFLIVFSVTDRRSFSKVPETLLRL--RAGR  105 (169)
T ss_dssp             -------------TEEEEEEEECCCCC----------CH---HHH--HCSEEEEEEETTCHHHHHTHHHHHHHH--HHHS
T ss_pred             -------------CeEEEEEEEECCCccccch--hhhhh---hhc--cCCEEEEEEECCChHHHHHHHHHHHHH--Hhcc
Confidence                         2245788999999877521  11110   111  25788888887652  22222232111  1111


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.+.....  .+....+.                      .. .+.+++++||++|.|++++|+.
T Consensus       106 ~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A          106 PHHDLPVILVGNKSDLARSREVS--LEEGRHLA----------------------GT-LSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             TTSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------HH-TTCEEEECBTTTTBSHHHHHHH
T ss_pred             cCCCCCEEEEeeCcchhhcccCC--HHHHHHHH----------------------HH-cCCcEEEecCccCCCHHHHHHH
Confidence            12379999999999997542210  01111111                      11 2468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+..
T Consensus       161 l~~~i~~  167 (169)
T 3q85_A          161 AVRQIRL  167 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.83  E-value=1.7e-20  Score=157.65  Aligned_cols=167  Identities=17%  Similarity=0.180  Sum_probs=93.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+++|++..+...        .++.....                          +.+.   
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~--------~~t~~~~~--------------------------~~~~---   63 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL--------QPTWHPTS--------------------------EELA---   63 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC--------CCCCSCEE--------------------------EEEE---
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc--------ccCCCCCe--------------------------EEEE---
Confidence            4557899999999999999999998765420        01110000                          0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      ..+..+.+|||||+.++..  ...    ..+  ..+|++++|+|+.....  ....|...+  .
T Consensus        64 ----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~--~  117 (190)
T 1m2o_B           64 ----------------IGNIKFTTFDLGGHIQARR--LWK----DYF--PEVNGIVFLVDAADPERFDEARVELDAL--F  117 (190)
T ss_dssp             ----------------ETTEEEEEEECCCSGGGTT--SGG----GGC--TTCCEEEEEEETTCGGGHHHHHHHHHHH--H
T ss_pred             ----------------ECCEEEEEEECCCCHHHHH--HHH----HHH--hcCCEEEEEEECCChHHHHHHHHHHHHH--H
Confidence                            1246789999999877521  110    011  24699999999876432  112221111  1


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......+.|+++|+||+|+.......+..+.+.       ......      .+. + ......+++++||++|.|++++
T Consensus       118 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-------~~~~~~------~~~-~-~~~~~~~~~~~Sa~~g~gi~~l  182 (190)
T 1m2o_B          118 NIAELKDVPFVILGNKIDAPNAVSEAELRSALG-------LLNTTG------SQR-I-EGQRPVEVFMCSVVMRNGYLEA  182 (190)
T ss_dssp             TCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT-------CSSCCC----------C-CSSCCEEEEECBTTTTBSHHHH
T ss_pred             cchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC-------Cccccc------ccc-c-cccceEEEEEeECCcCCCHHHH
Confidence            111235799999999999976221111111110       000000      000 0 0012467999999999999999


Q ss_pred             HHHHHHH
Q 020549          305 FKAVEES  311 (324)
Q Consensus       305 ~~~i~~~  311 (324)
                      |+.|.+.
T Consensus       183 ~~~l~~~  189 (190)
T 1m2o_B          183 FQWLSQY  189 (190)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9998753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=8.1e-21  Score=159.36  Aligned_cols=166  Identities=18%  Similarity=0.231  Sum_probs=101.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+|+|++|||||||+++|++..+......+       . ...+..    ..                  +...   
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-------~-~~~~~~----~~------------------~~~~---   60 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT-------I-GVDFKV----KT------------------ISVD---   60 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC-------C-SEEEEE----EE------------------EEET---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc-------c-ceEEEE----EE------------------EEEC---
Confidence            4578999999999999999999988665322110       0 000000    00                  0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..  .    ....+  ..+|++++|+|+.....  ....|   +   .
T Consensus        61 ---------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~---~  111 (195)
T 1x3s_A           61 ---------------GNKAKLAIWDTAGQERFRT--L----TPSYY--RGAQGVILVYDVTRRDTFVKLDNW---L---N  111 (195)
T ss_dssp             ---------------TEEEEEEEEEECSSGGGCC--S----HHHHH--TTCCEEEEEEETTCHHHHHTHHHH---H---H
T ss_pred             ---------------CeEEEEEEEeCCCchhhhh--h----hHHHh--ccCCEEEEEEECcCHHHHHHHHHH---H---H
Confidence                           1245789999999877521  1    11122  34689999999865321  11222   1   2


Q ss_pred             HHh----hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          226 ILY----KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       226 ~~~----~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                      .+.    ..++|+++|+||+|+.......+.   ...+.+                     .  ...+++++||++|.|+
T Consensus       112 ~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A          112 ELETYCTRNDIVNMLVGNKIDKENREVDRNE---GLKFAR---------------------K--HSMLFIEASAKTCDGV  165 (195)
T ss_dssp             HHTTCCSCSCCEEEEEEECTTSSSCCSCHHH---HHHHHH---------------------H--TTCEEEECCTTTCTTH
T ss_pred             HHHHhcCcCCCcEEEEEECCcCcccccCHHH---HHHHHH---------------------H--cCCEEEEecCCCCCCH
Confidence            222    246899999999999543211111   111110                     1  2468999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhc
Q 020549          302 EAYFKAVEESAQEFMETYKY  321 (324)
Q Consensus       302 ~~l~~~i~~~~~~~~~~~~~  321 (324)
                      +++|+.|.+.+...+..|..
T Consensus       166 ~~l~~~l~~~~~~~~~~~~~  185 (195)
T 1x3s_A          166 QCAFEELVEKIIQTPGLWES  185 (195)
T ss_dssp             HHHHHHHHHHHHTSGGGTCC
T ss_pred             HHHHHHHHHHHHhhhhhhcc
Confidence            99999999999876665543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=2.7e-20  Score=158.55  Aligned_cols=164  Identities=16%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+......       +... .+..    .                  .+...  
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~-~~~~----~------------------~~~~~--   65 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT-------TIGI-DFKI----K------------------TVDIN--   65 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSC-------CCSC-CEEE----E------------------EEEET--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCC-------cccc-eEEE----E------------------EEEEC--
Confidence            4568999999999999999999998765432111       0000 0000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++.  ....    ..+  ..+|++++|+|......  ....|   +..+
T Consensus        66 ----------------~~~~~~~l~Dt~G~~~~~--~~~~----~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~~~i  118 (213)
T 3cph_A           66 ----------------GKKVKLQLWDTAGQERFR--TITT----AYY--RGAMGIILVYDVTDERTFTNIKQW---FKTV  118 (213)
T ss_dssp             ----------------TEEEEEEEECCTTGGGGT--CCCH----HHH--TTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             ----------------CEEEEEEEEeCCCcHHHH--HHHH----HHh--ccCCEEEEEEECCCHHHHHHHHHH---HHHH
Confidence                            113578999999987752  1111    111  34689999999865321  11223   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++|+||+|+.......+..   ..+..                     . . +.+++++||++|.||+++
T Consensus       119 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~-~-~~~~~~~Sa~~~~gi~~l  172 (213)
T 3cph_A          119 NEHANDEAQLLLVGNKSDMETRVVTADQG---EALAK---------------------E-L-GIPFIESSAKNDDNVNEI  172 (213)
T ss_dssp             HHHTTTCSEEEEEEECTTCSSCCSCHHHH---HHHHH---------------------H-H-TCCEEECBTTTTBSSHHH
T ss_pred             HHhcCCCCCEEEEEECCCCcccccCHHHH---HHHHH---------------------H-c-CCEEEEEeCCCCCCHHHH
Confidence            23333478999999999995432111111   11111                     1 1 368999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |..|.+.+.+.
T Consensus       173 ~~~l~~~~~~~  183 (213)
T 3cph_A          173 FFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.83  E-value=4e-20  Score=154.07  Aligned_cols=161  Identities=18%  Similarity=0.221  Sum_probs=95.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+++|++..+.. ..++       .. .... .                       +.    
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t-------~g-~~~~-~-----------------------~~----   56 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPT-------QG-FNIK-S-----------------------VQ----   56 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEE-------TT-EEEE-E-----------------------EE----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCc-------CC-eEEE-E-----------------------EE----
Confidence            356899999999999999999999874321 1100       00 0000 0                       00    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      ..+..+.+|||||++++..      ....++  ..+|++++|+|......  ....|..  ..+
T Consensus        57 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~--~~~  110 (181)
T 1fzq_A           57 ----------------SQGFKLNVWDIGGQRKIRP------YWRSYF--ENTDILIYVIDSADRKRFEETGQELT--ELL  110 (181)
T ss_dssp             ----------------ETTEEEEEEECSSCGGGHH------HHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHH--HHT
T ss_pred             ----------------ECCEEEEEEECCCCHHHHH------HHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHH--HHH
Confidence                            1245788999999877521      111222  34699999999865421  1111211  001


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~  302 (324)
                      ......+.|+++|+||+|+.......+..+.+.                     .   ..  ....++++|||++|.||+
T Consensus       111 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A          111 EEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN---------------------L---HTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             TCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHH
T ss_pred             hChhhcCCCEEEEEECcCcccCCCHHHHHHHhC---------------------c---hhccCCceEEEEccCCCCCCHH
Confidence            111235799999999999986532211111110                     0   00  123579999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQE  314 (324)
Q Consensus       303 ~l~~~i~~~~~~  314 (324)
                      ++|+.|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.83  E-value=1.3e-19  Score=152.91  Aligned_cols=176  Identities=15%  Similarity=0.160  Sum_probs=98.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+++|.+|||||||++++.+..... .         +. ...++.    .                  ..... 
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~---------~~-~~~~~~----~------------------~~~~~-   62 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN-E---------TL-FLESTN----K------------------IYKDD-   62 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCCGG-G---------GG-GCCCCC----S------------------CEEEE-
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCCCc-c---------ee-eecccc----c------------------eeeee-
Confidence            4567899999999999999999988753221 0         00 000000    0                  00000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYAC  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~  224 (324)
                        +..            .....+.||||||++++..  ... ....++  ..+|++++|+|....+... ..|...+..+
T Consensus        63 --~~~------------~~~~~l~i~Dt~G~~~~~~--~~~-~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~  123 (196)
T 3llu_A           63 --ISN------------SSFVNFQIWDFPGQMDFFD--PTF-DYEMIF--RGTGALIYVIDAQDDYMEALTRLHITVSKA  123 (196)
T ss_dssp             --ECC------------TTSCCEEEEECCSSCCTTC--TTC-CHHHHH--HTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred             --ccC------------CCeeEEEEEECCCCHHHHh--hhh-hccccc--ccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence              000            2357899999999988621  110 001122  2368999999998763221 3333333221


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~  302 (324)
                      . ....+.|+++|+||+|+.+.+...+....+....         ...+++       .+  ..+++++++||++ .||+
T Consensus       124 ~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~---------~~~~~~-------~~~~~~~~~~~e~Sa~~-~~v~  185 (196)
T 3llu_A          124 Y-KVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA---------NDDLAD-------AGLEKLHLSFYLTSIYD-HSIF  185 (196)
T ss_dssp             H-HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH---------HHHHHH-------TTCTTSCEEEEEECTTS-THHH
T ss_pred             H-hcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH---------HHHHHH-------hhhhcCCcceEEEEech-hhHH
Confidence            1 1345899999999999988653322111111000         000110       01  1246899999999 9999


Q ss_pred             HHHHHHHHHH
Q 020549          303 AYFKAVEESA  312 (324)
Q Consensus       303 ~l~~~i~~~~  312 (324)
                      ++|..|.+.+
T Consensus       186 ~~f~~l~~~l  195 (196)
T 3llu_A          186 EAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.83  E-value=1.5e-20  Score=156.91  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+++|++|||||||+++|++.. .....       ++.. ....                        .+.    
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~-------~t~~-~~~~------------------------~~~----   58 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTIS-------PTLG-FNIK------------------------TLE----   58 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCC-------CCSS-EEEE------------------------EEE----
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCccc-------ccCc-cceE------------------------EEE----
Confidence            467899999999999999999999875 21111       1110 0000                        000    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH-HH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~-~~  225 (324)
                                      ..+..+.||||||++++..  ...    .  .-..+|++++|+|+.....-.. ....+.. +.
T Consensus        59 ----------------~~~~~~~~~Dt~G~~~~~~--~~~----~--~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~  113 (186)
T 1ksh_A           59 ----------------HRGFKLNIWDVGGQKSLRS--YWR----N--YFESTDGLIWVVDSADRQRMQD-CQRELQSLLV  113 (186)
T ss_dssp             ----------------ETTEEEEEEEECCSHHHHT--TGG----G--GCTTCSEEEEEEETTCGGGHHH-HHHHHHHHHT
T ss_pred             ----------------ECCEEEEEEECCCCHhHHH--HHH----H--HhcCCCEEEEEEECcCHHHHHH-HHHHHHHHHh
Confidence                            1256789999999876521  110    0  0134699999999876432111 1111111 11


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~  303 (324)
                      .....+.|+++|+||+|+.+.....+..+.+.                     .   ..  ....+++++||++|.|+++
T Consensus       114 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~~~gi~~  169 (186)
T 1ksh_A          114 EERLAGATLLIFANKQDLPGALSCNAIQEALE---------------------L---DSIRSHHWRIQGCSAVTGEDLLP  169 (186)
T ss_dssp             CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ChhcCCCcEEEEEeCccCCCCCCHHHHHHHhC---------------------h---hhccCCceEEEEeeCCCCCCHHH
Confidence            11125799999999999986532211111110                     0   00  1245899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      +++.|.+.+.+.
T Consensus       170 l~~~l~~~i~~~  181 (186)
T 1ksh_A          170 GIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.83  E-value=2.1e-20  Score=152.77  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=96.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|++|||||||+++|++..+...+.++       .. ..+..    .                  .+...   
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t-------~~-~~~~~----~------------------~~~~~---   50 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT-------IG-VDFLE----R------------------QIQVN---   50 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCC-------CS-SSEEE----E------------------EEEET---
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------eE-EEEEE----E------------------EEEEC---
Confidence            4578999999999999999999987654321110       00 00000    0                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..  ...    ..+  ..+|++++|+|.....  .....|...+   .
T Consensus        51 ---------------~~~~~~~l~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~  104 (168)
T 1z2a_A           51 ---------------DEDVRLMLWDTAGQEEFDA--ITK----AYY--RGAQACVLVFSTTDRESFEAISSWREKV---V  104 (168)
T ss_dssp             ---------------TEEEEEEEECCTTGGGTTC--CCH----HHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH---H
T ss_pred             ---------------CEEEEEEEEcCCCcHhHHH--HHH----HHh--cCCCEEEEEEECcCHHHHHHHHHHHHHH---H
Confidence                           1245789999999877521  111    111  3468999999986632  1122232211   1


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ... .+.|+++|+||+|+.+.....  .+....+.+                     .  .+.+++++||++|.|+++++
T Consensus       105 ~~~-~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~  158 (168)
T 1z2a_A          105 AEV-GDIPTALVQNKIDLLDDSCIK--NEEAEGLAK---------------------R--LKLRFYRTSVKEDLNVSEVF  158 (168)
T ss_dssp             HHH-CSCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H--HTCEEEECBTTTTBSSHHHH
T ss_pred             HhC-CCCCEEEEEECcccCcccccC--HHHHHHHHH---------------------H--cCCeEEEEecCCCCCHHHHH
Confidence            111 579999999999997543210  011111111                     1  14689999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      +.|.+.+.
T Consensus       159 ~~l~~~~~  166 (168)
T 1z2a_A          159 KYLAEKHL  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.83  E-value=1.5e-20  Score=167.31  Aligned_cols=162  Identities=23%  Similarity=0.268  Sum_probs=101.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||+|+|++..+..       +..++++.....                        +.+.     
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v-------~~~~g~t~~~~~------------------------~~~~-----   46 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRV-------GNWAGVTVERKE------------------------GQFS-----   46 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEE-------EECTTSSSEEEE------------------------EEEE-----
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCccc-------CCCCCeeEEEEE------------------------EEEE-----
Confidence            4789999999999999999999875321       111222111100                        0000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh---hhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                    ..+..+.||||||+.++...   ......+.+.+ ....+|++++|+|+...    ...   +...
T Consensus        47 --------------~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----~~~---~~~~  105 (274)
T 3i8s_A           47 --------------TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----ERN---LYLT  105 (274)
T ss_dssp             --------------CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----HHH---HHHH
T ss_pred             --------------eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----HHH---HHHH
Confidence                          12467899999999886321   12223333333 33568999999998652    111   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+...++|+++|+||+|+.......   .....+.+                      . -+.+++++||++|.|+++|
T Consensus       106 ~~l~~~~~p~ivv~NK~Dl~~~~~~~---~~~~~l~~----------------------~-lg~~~i~~SA~~g~gi~el  159 (274)
T 3i8s_A          106 LQLLELGIPCIVALNMLDIAEKQNIR---IEIDALSA----------------------R-LGCPVIPLVSTRGRGIEAL  159 (274)
T ss_dssp             HHHHHHTCCEEEEEECHHHHHHTTEE---ECHHHHHH----------------------H-HTSCEEECCCGGGHHHHHH
T ss_pred             HHHHhcCCCEEEEEECccchhhhhHH---HHHHHHHH----------------------h-cCCCEEEEEcCCCCCHHHH
Confidence            34445689999999999986543211   11111111                      1 1479999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      ++.|.+.++
T Consensus       160 ~~~i~~~~~  168 (274)
T 3i8s_A          160 KLAIDRYKA  168 (274)
T ss_dssp             HHHHHTCCC
T ss_pred             HHHHHHHHh
Confidence            999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.83  E-value=1.1e-20  Score=154.71  Aligned_cols=161  Identities=14%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|++|||||||+++|++..+......       ..     +......                  .+...   
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-------~~-----~~~~~~~------------------~~~~~---   51 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQES-------TI-----GAAFLTQ------------------TVCLD---   51 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC-------CS-----SEEEEEE------------------EEEET---
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------cc-----ceEEEEE------------------EEEEC---
Confidence            457899999999999999999998765432110       00     0000000                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..  .    ....+  ..+|++++|+|.....  .....|   +..+.
T Consensus        52 ---------------~~~~~~~~~D~~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~  105 (170)
T 1r2q_A           52 ---------------DTTVKFEIWDTAGQERYHS--L----APMYY--RGAQAAIVVYDITNEESFARAKNW---VKELQ  105 (170)
T ss_dssp             ---------------TEEEEEEEEEECCSGGGGG--G----HHHHH--TTCSEEEEEEETTCHHHHHHHHHH---HHHHH
T ss_pred             ---------------CEEEEEEEEeCCCcHHhhh--h----hHHhc--cCCCEEEEEEECCCHHHHHHHHHH---HHHHH
Confidence                           1245788999999877521  1    11112  3468999999986542  111222   22222


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+.......  .+....+..                       ....+++++||++|.|+++++
T Consensus       106 ~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~Sa~~g~gi~~l~  160 (170)
T 1r2q_A          106 RQASPNIVIALSGNKADLANKRAVD--FQEAQSYAD-----------------------DNSLLFMETSAKTSMNVNEIF  160 (170)
T ss_dssp             HHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHH
T ss_pred             HhcCCCCcEEEEEECccCccccccC--HHHHHHHHH-----------------------HcCCeEEEEeCCCCCCHHHHH
Confidence            2233578999999999997532110  011111110                       124689999999999999999


Q ss_pred             HHHHHHH
Q 020549          306 KAVEESA  312 (324)
Q Consensus       306 ~~i~~~~  312 (324)
                      +.|.+.+
T Consensus       161 ~~i~~~~  167 (170)
T 1r2q_A          161 MAIAKKL  167 (170)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHH
Confidence            9998765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.83  E-value=2.2e-20  Score=155.62  Aligned_cols=166  Identities=16%  Similarity=0.208  Sum_probs=100.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+|+|++|||||||+++|++..+......+       .     +..+...                  .+...  
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~-----~~~~~~~------------------~~~~~--   55 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT-------I-----GVEFGSK------------------IINVG--   55 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC-------S-----EEEEEEE------------------EEEET--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-------c-----ceEEEEE------------------EEEEC--
Confidence            34588999999999999999999988765422110       0     0000000                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..      .....  -..+|++++|+|......  ....|   +..+
T Consensus        56 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~  108 (186)
T 2bme_A           56 ----------------GKYVKLQIWDTAGQERFRS------VTRSY--YRGAAGALLVYDITSRETYNALTNW---LTDA  108 (186)
T ss_dssp             ----------------TEEEEEEEEEECCSGGGHH------HHHTT--STTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             ----------------CEEEEEEEEeCCCcHHHHH------HHHHH--HhcCCEEEEEEECcCHHHHHHHHHH---HHHH
Confidence                            1135788999999877511      11111  134699999999876321  11223   2222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......+.|+++|+||+|+.......  ..+...+.                      . ..+.+++++||++|.|++++
T Consensus       109 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A          109 RMLASQNIVIILCGNKKDLDADREVT--FLEASRFA----------------------Q-ENELMFLETSALTGENVEEA  163 (186)
T ss_dssp             HHHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHH
T ss_pred             HHhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCEEEEecCCCCCCHHHH
Confidence            33344679999999999996532210  01111111                      0 12468999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFM  316 (324)
Q Consensus       305 ~~~i~~~~~~~~  316 (324)
                      |+.|.+.+....
T Consensus       164 ~~~l~~~~~~~~  175 (186)
T 2bme_A          164 FVQCARKILNKI  175 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999886543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.83  E-value=1.1e-20  Score=156.31  Aligned_cols=165  Identities=18%  Similarity=0.134  Sum_probs=97.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|++|||||||+++|++..+...+.+       +.....+...                       +...   
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~-------t~~~~~~~~~-----------------------~~~~---   51 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQ-------TIGLDFFLRR-----------------------ITLP---   51 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHH-------TTTSSEEEEE-----------------------EEET---
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCC-------ceeEEEEEEE-----------------------EEeC---
Confidence            458899999999999999999998765422110       0000000000                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                        .            .....+.||||||+.++..  .    ....+  ..+|++++|+|......  ....|...+   .
T Consensus        52 --~------------~~~~~~~~~Dt~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~  106 (178)
T 2hxs_A           52 --G------------NLNVTLQIWDIGGQTIGGK--M----LDKYI--YGAQGVLLVYDITNYQSFENLEDWYTVV---K  106 (178)
T ss_dssp             --T------------TEEEEEEEEECTTCCTTCT--T----HHHHH--TTCSEEEEEEETTCHHHHHTHHHHHHHH---H
T ss_pred             --C------------CCEEEEEEEECCCCccccc--h----hhHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHH---H
Confidence              0            0135789999999887521  1    11122  34689999999865321  222332222   2


Q ss_pred             HHhh--cCCC-eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          226 ILYK--TRLP-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       226 ~~~~--~~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      ....  .+.| +++|+||+|+.+.....  .+....+.+                     .  .+.+++++||++|.||+
T Consensus       107 ~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~  161 (178)
T 2hxs_A          107 KVSEESETQPLVALVGNKIDLEHMRTIK--PEKHLRFCQ---------------------E--NGFSSHFVSAKTGDSVF  161 (178)
T ss_dssp             HHHHHHTCCCEEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHH
T ss_pred             HHhcccCCCCeEEEEEEccccccccccC--HHHHHHHHH---------------------H--cCCcEEEEeCCCCCCHH
Confidence            2111  2566 78999999997532110  011111111                     1  13689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      ++|..|.+.+...
T Consensus       162 ~l~~~l~~~~~~~  174 (178)
T 2hxs_A          162 LCFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.83  E-value=2.1e-20  Score=159.71  Aligned_cols=188  Identities=19%  Similarity=0.208  Sum_probs=96.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+++|++|||||||+++|++..+...+.+        +....+.  +                       ...  
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~--------~~~~~~~--~-----------------------~~~--   49 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS--------ITDSSAI--Y-----------------------KVN--   49 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC--------CSCEEEE--E-----------------------ECS--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC--------cceeeEE--E-----------------------Eec--
Confidence            3568899999999999999999998876532210        0000000  0                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~  225 (324)
                         .            .....+.||||||+.++.  .    .+...+ ...+|++++|+|..............+. .+.
T Consensus        50 ---~------------~~~~~~~i~Dt~G~~~~~--~----~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  107 (214)
T 2fh5_B           50 ---N------------NRGNSLTLIDLPGHESLR--F----QLLDRF-KSSARAVVFVVDSAAFQREVKDVAEFLYQVLI  107 (214)
T ss_dssp             ---S------------TTCCEEEEEECCCCHHHH--H----HHHHHH-GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred             ---C------------CCccEEEEEECCCChhHH--H----HHHHHH-HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHh
Confidence               0            114678999999987752  1    111111 1235899999998652111111111111 111


Q ss_pred             H--HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCc------cchhhHHH----HHHHh--HHHHhccCcee
Q 020549          226 I--LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH------SYTSTLTN----SLSLA--LDEFYKNLKSV  291 (324)
Q Consensus       226 ~--~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~l~~----~~~~~--~~~~~~~~~iv  291 (324)
                      .  ....++|+++|+||+|+..........+.+......+...+      .....+.+    ..+..  ...+...++++
T Consensus       108 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (214)
T 2fh5_B          108 DSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL  187 (214)
T ss_dssp             HHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEE
T ss_pred             hhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEE
Confidence            1  12346899999999999875443333333332222110000      00000000    00000  00000156799


Q ss_pred             eeccccC------CChHHHHHHHHHH
Q 020549          292 GVSSVSG------AGIEAYFKAVEES  311 (324)
Q Consensus       292 ~vSA~~g------~gv~~l~~~i~~~  311 (324)
                      +|||++|      .||+++|+.|.+.
T Consensus       188 e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          188 ECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ECBCC-------CCBCHHHHHHHHHH
T ss_pred             EeeccCCCccccccChHHHHHHHHHh
Confidence            9999999      9999999999875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=3.1e-20  Score=176.81  Aligned_cols=172  Identities=16%  Similarity=0.212  Sum_probs=104.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|.+|+|||||+|+|++.....            +...++++    ++..              ...+.   
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------~~~~~gtt----~~~~--------------~~~~~---  239 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------VSNVAGTT----RDAV--------------DTSFT---  239 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECC----------CTT--------------SEEEE---
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccc------------cCCCCCeE----EEEE--------------EEEEE---
Confidence            457899999999999999999999764321            22222222    1000              00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh---hhhHHHHHHHH-hccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW---SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                                      ..+..+.||||||+.+....   .... ...+.+ .-..+|++++|+|+.+++..++.+     
T Consensus       240 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad~~llviD~~~~~~~~~~~-----  297 (456)
T 4dcu_A          240 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKY-SVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----  297 (456)
T ss_dssp             ----------------ETTEEEEETTGGGTTTBTTBCCCCSHH-HHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----
T ss_pred             ----------------ECCceEEEEECCCCCcCcccchHHHHH-HHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----
Confidence                            12457899999996432100   0111 111111 113469999999999988766532     


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhH--HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFA--LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                      .+..+...++|+|+|+||+|+.+....  .+..+.+..   .+                   .+..+.+++++||++|.|
T Consensus       298 ~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~SA~~g~g  355 (456)
T 4dcu_A          298 IAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRD---HF-------------------QFLDYAPILFMSALTKKR  355 (456)
T ss_dssp             HHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHH---HC-------------------GGGTTSCEEECCTTTCTT
T ss_pred             HHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHH---hc-------------------ccCCCCCEEEEcCCCCcC
Confidence            123344578999999999999864321  112111110   00                   223468999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQEF  315 (324)
Q Consensus       301 v~~l~~~i~~~~~~~  315 (324)
                      |+++|+.|.+.+...
T Consensus       356 v~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          356 IHTLMPAIIKASENH  370 (456)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.83  E-value=2.8e-20  Score=157.96  Aligned_cols=165  Identities=15%  Similarity=0.171  Sum_probs=99.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+++|++..+...+..       +.. ..+..    .                  .+...   
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~~-~~~~~----~------------------~~~~~---   53 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYIS-------TIG-VDFKI----K------------------TVELD---   53 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCC-------SSC-CCEEE----E------------------EEEET---
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccc-ceeEE----E------------------EEEEC---
Confidence            457899999999999999999998866532211       000 00000    0                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.++..  ....    .  -..+|++++|+|+...... .....++..+...
T Consensus        54 ---------------~~~~~~~l~Dt~G~~~~~~--~~~~----~--~~~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~  109 (206)
T 2bcg_Y           54 ---------------GKTVKLQIWDTAGQERFRT--ITSS----Y--YRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRY  109 (206)
T ss_dssp             ---------------TEEEEEEEECCTTTTTTTC--CCGG----G--GTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred             ---------------CEEEEEEEEeCCChHHHHH--HHHH----h--ccCCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence                           1235789999999877521  1110    1  1346899999998763211 1111122222333


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.                      . ..+.+++++||++|.||+++|..
T Consensus       110 ~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y          110 ATSTVLKLLVGNKCDLKDKRVVE--YDVAKEFA----------------------D-ANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             SCTTCEEEEEEECTTCTTTCCSC--HHHHHHHH----------------------H-HTTCCEEECCTTTCTTHHHHHHH
T ss_pred             cCCCCCEEEEEECCCCccccccC--HHHHHHHH----------------------H-HcCCeEEEEeCCCCCCHHHHHHH
Confidence            34578999999999997643210  01111111                      1 12468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+.+
T Consensus       165 l~~~i~~  171 (206)
T 2bcg_Y          165 MARQIKE  171 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.83  E-value=2.6e-20  Score=157.70  Aligned_cols=168  Identities=15%  Similarity=0.191  Sum_probs=96.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+......++     +....  ..                       .+...  
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-----~~~~~--~~-----------------------~~~~~--   70 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI-----GVEFG--SR-----------------------VVNVG--   70 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-----------------CCEE--EE-----------------------EEEET--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc-----cceeE--EE-----------------------EEEEC--
Confidence            346889999999999999999999876654322111     00000  00                       00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  ...    ..+  ..+|++++|+|........ .....+..+..
T Consensus        71 ----------------~~~~~l~l~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~  125 (200)
T 2o52_A           71 ----------------GKTVKLQIWDTAGQERFRS--VTR----SYY--RGAAGALLVYDITSRETYN-SLAAWLTDART  125 (200)
T ss_dssp             ----------------TEEEEEEEECCTTHHHHSC--CCH----HHH--TTCSEEEEEEETTCHHHHH-THHHHHHHHHH
T ss_pred             ----------------CeeeEEEEEcCCCcHhHHH--HHH----HHh--ccCCEEEEEEECcCHHHHH-HHHHHHHHHHH
Confidence                            1135789999999766421  111    111  3468999999986532111 11111222223


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.......  ..+...+.                      . ..+.+++++||++|.||+++|.
T Consensus       126 ~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          126 LASPNIVVILCGNKKDLDPEREVT--FLEASRFA----------------------Q-ENELMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             HTCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEEECTTTCTTHHHHHH
T ss_pred             hcCCCCcEEEEEECCCcccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHH
Confidence            334579999999999996532210  01111111                      0 1246899999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          307 AVEESAQEFM  316 (324)
Q Consensus       307 ~i~~~~~~~~  316 (324)
                      .|.+.+....
T Consensus       181 ~l~~~i~~~~  190 (200)
T 2o52_A          181 KCARTILNKI  190 (200)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999886543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.83  E-value=2e-19  Score=168.52  Aligned_cols=115  Identities=20%  Similarity=0.278  Sum_probs=77.3

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeecccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV  243 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl  243 (324)
                      ..+.||||||++++..      .+...+  ..+|++++|+|+.++. ..+.  ...+   ..+...+ .|+|+|+||+|+
T Consensus        75 ~~~~iiDtPGh~~~~~------~~~~~~--~~~D~~ilVvda~~~~~~~qt--~~~~---~~~~~~~~~~iivviNK~Dl  141 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMA------TMLSGA--ALMDGAILVVAANEPFPQPQT--REHF---VALGIIGVKNLIIVQNKVDV  141 (403)
T ss_dssp             EEEEEEECCCCGGGHH------HHHHHH--TTCSEEEEEEETTSCSSCHHH--HHHH---HHHHHHTCCCEEEEEECGGG
T ss_pred             ceEEEEECCCcHHHHH------HHHHHH--hhCCEEEEEEECCCCCCcHHH--HHHH---HHHHHcCCCCEEEEEECccc
Confidence            5789999999877622      222222  4579999999999876 4333  1112   2223333 589999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      .+.+......+++..+...                    ......+++++||++|.|+++|++.|.+.++
T Consensus       142 ~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          142 VSKEEALSQYRQIKQFTKG--------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHHHh--------------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            9876544444333321110                    1123578999999999999999999998765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.83  E-value=1.1e-20  Score=156.02  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|++|||||||+++|++..+......+       .. ..+..    .                  .+...    
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-------~~-~~~~~----~------------------~~~~~----   59 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT-------IG-IDFLS----K------------------TMYLE----   59 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-------CS-EEEEE----E------------------EEEET----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-------ee-eEEEE----E------------------EEEEC----
Confidence            478999999999999999999987665322110       00 00000    0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..  ...    ..+  ..+|++++|+|+....  .....|   +..+..
T Consensus        60 --------------~~~~~~~~~Dt~G~~~~~~--~~~----~~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~  114 (179)
T 2y8e_A           60 --------------DRTVRLQLWDTAGQERFRS--LIP----SYI--RDSTVAVVVYDITNTNSFHQTSKW---IDDVRT  114 (179)
T ss_dssp             --------------TEEEEEEEEEECCSGGGGG--GSH----HHH--HTCSEEEEEEETTCHHHHHTHHHH---HHHHHH
T ss_pred             --------------CeEEEEEEEECCCcHHHHH--HHH----HHh--cCCCEEEEEEECCCHHHHHHHHHH---HHHHHH
Confidence                          1134789999999877521  111    112  2368999999986532  222223   222223


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.+.....  ......+..                     .  .+.+++++||++|.|++++++
T Consensus       115 ~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A          115 ERGSDVIIMLVGNKTDLSDKRQVS--TEEGERKAK---------------------E--LNVMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             HHTTSSEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEEBTTTTBSHHHHHH
T ss_pred             hcCCCCcEEEEEECCcccccCcCC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHH
Confidence            334579999999999997543210  001111110                     1  146899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|.+.++
T Consensus       170 ~l~~~~~  176 (179)
T 2y8e_A          170 RVAAALP  176 (179)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9987653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=159.95  Aligned_cols=165  Identities=14%  Similarity=0.185  Sum_probs=98.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+...+.+       +. ...+...                       +...  
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------t~-~~~~~~~-----------------------~~~~--   58 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEP-------TK-ADSYRKK-----------------------VVLD--   58 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCT-------TC-CEEEEEE-----------------------EEET--
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------cc-ceEEEEE-----------------------EEEC--
Confidence            3457899999999999999999998765432110       00 0000000                       0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..      .....+.  .+|++++|+|.....  .....|...+  .
T Consensus        59 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--~  112 (206)
T 2bov_A           59 ----------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADFREQI--L  112 (206)
T ss_dssp             ----------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--H
T ss_pred             ----------------CEEEEEEEEcCCChhhhHH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHH--H
Confidence                            1134788999999877521      1111222  258889999886532  1122232211  1


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++|+||+|+.+.....  .+....+.+                     .  .+.+++++||++|.||+++
T Consensus       113 ~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A          113 RVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAE---------------------Q--WNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             HHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHHHH
T ss_pred             HhcCCCCCCEEEEEeccCcccccccc--HHHHHHHHH---------------------H--hCCeEEEEeCCCCCCHHHH
Confidence            11223479999999999997643210  011111111                     1  1368999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |..|.+.+...
T Consensus       168 ~~~l~~~i~~~  178 (206)
T 2bov_A          168 FFDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.82  E-value=6.5e-21  Score=158.54  Aligned_cols=168  Identities=16%  Similarity=0.157  Sum_probs=75.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+++|++..+.....+       ++. ..+..    .                  .+...   
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~-------t~~-~~~~~----~------------------~~~~~---   53 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFIS-------TIG-IDFKI----R------------------TIELD---   53 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHH-------HHC-EEEEE----E------------------EEEET---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------ccc-ceeEE----E------------------EEEEC---
Confidence            457899999999999999999997755421110       000 00000    0                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.++..  ...    ..  -..+|++++|+|....... .....++..+...
T Consensus        54 ---------------~~~~~~~l~Dt~G~~~~~~--~~~----~~--~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~  109 (183)
T 2fu5_C           54 ---------------GKRIKLQIWDTAGQERFRT--ITT----AY--YRGAMGIMLVYDITNEKSF-DNIRNWIRNIEEH  109 (183)
T ss_dssp             ---------------TEEEEEEEEEC-----------CC----TT--TTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHH
T ss_pred             ---------------CEEEEEEEEcCCCChhhhh--hHH----HH--HhcCCEEEEEEECcCHHHH-HHHHHHHHHHHHh
Confidence                           1135789999999876521  000    00  1346899999998763211 1111112222222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.||+++|..
T Consensus       110 ~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C          110 ASADVEKMILGNKCDVNDKRQVS--KERGEKLAL---------------------D--YGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             SCTTCEEEEEEEC--CCSCCCSC--HHHHHHHHH---------------------H--HTCEEEECCC---CCHHHHHHH
T ss_pred             cCCCCCEEEEEECccCCccCcCC--HHHHHHHHH---------------------H--cCCeEEEEeCCCCCCHHHHHHH
Confidence            23578999999999997642210  011111111                     1  1368999999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          308 VEESAQEFME  317 (324)
Q Consensus       308 i~~~~~~~~~  317 (324)
                      |.+.+.....
T Consensus       165 l~~~i~~~~~  174 (183)
T 2fu5_C          165 LARDIKAKMD  174 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9998865443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=159.12  Aligned_cols=170  Identities=18%  Similarity=0.160  Sum_probs=94.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+|+|++|||||||+++|++..+......++     +.......                         +... 
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----~~~~~~~~-------------------------~~~~-   73 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL-----GVDFQMKT-------------------------LIVD-   73 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------CEEEE-------------------------EEET-
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc-----cceeEEEE-------------------------EEEC-
Confidence            4567899999999999999999999886643221111     00000000                         0000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~  223 (324)
                                       .....+.||||||+.++..      .....+.  .+|++++|+|+.....  ....|   +..
T Consensus        74 -----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~~d~iilv~d~~~~~s~~~~~~~---~~~  125 (199)
T 2p5s_A           74 -----------------GERTVLQLWDTAGQERFRS------IAKSYFR--KADGVLLLYDVTCEKSFLNIREW---VDM  125 (199)
T ss_dssp             -----------------TEEEEEEEEECTTCTTCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHH---HHH
T ss_pred             -----------------CEEEEEEEEECCCCcchhh------hHHHHHh--hCCEEEEEEECCChHHHHHHHHH---HHH
Confidence                             1235688999999877521      1122222  2589999999865421  22233   222


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +......++|+++|+||+|+......... ..+             .......+.    .. .+.+++++||++|.||++
T Consensus       126 i~~~~~~~~piilv~NK~Dl~~~~~~~~~-~~v-------------~~~~~~~~~----~~-~~~~~~~~SA~~g~gv~e  186 (199)
T 2p5s_A          126 IEDAAHETVPIMLVGNKADIRDTAATEGQ-KCV-------------PGHFGEKLA----MT-YGALFCETSAKDGSNIVE  186 (199)
T ss_dssp             HHHHC---CCEEEEEECGGGHHHHHHTTC-CCC-------------CHHHHHHHH----HH-HTCEEEECCTTTCTTHHH
T ss_pred             HHHhcCCCCCEEEEEECcccccccccccc-ccc-------------CHHHHHHHH----HH-cCCeEEEeeCCCCCCHHH
Confidence            23333357999999999998643210000 000             000000000    11 146899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      +|..|.+.+.
T Consensus       187 l~~~l~~~i~  196 (199)
T 2p5s_A          187 AVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.82  E-value=2.5e-20  Score=154.25  Aligned_cols=169  Identities=17%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+.....       ++.     +......                  .+...  
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-------~~~-----~~~~~~~------------------~~~~~--   54 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI-------TTI-----GVDFKIR------------------TVEIN--   54 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCT-------TTB-----SEEEEEE------------------EEEET--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccC-------CCc-----eeEEEEE------------------EEEEC--
Confidence            345789999999999999999999876542110       000     0000000                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  ....    .  -..+|++++|+|........ ....++..+..
T Consensus        55 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~----~--~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~  109 (181)
T 3tw8_B           55 ----------------GEKVKLQIWDTAGQERFRT--ITST----Y--YRGTHGVIVVYDVTSAESFV-NVKRWLHEINQ  109 (181)
T ss_dssp             ----------------TEEEEEEEEEETTGGGCSS--CCGG----G--GTTCSEEEEEEETTCHHHHH-HHHHHHHHHHH
T ss_pred             ----------------CEEEEEEEEcCCCchhhhh--hHHH----H--hccCCEEEEEEECCCHHHHH-HHHHHHHHHHH
Confidence                            1135789999999876521  1111    0  13468999999987632111 11111211111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                       ...+.|+++|+||+|+........  .....+.                      . ..+.+++++||++|.|++++|+
T Consensus       110 -~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B          110 -NCDDVCRILVGNKNDDPERKVVET--EDAYKFA----------------------G-QMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             -HCTTSEEEEEEECTTCGGGCCSCH--HHHHHHH----------------------H-HHTCCEEECBTTTTBSHHHHHH
T ss_pred             -hCCCCCEEEEEECCCCchhcccCH--HHHHHHH----------------------H-HcCCeEEEEECCCCCCHHHHHH
Confidence             124689999999999875432110  0111111                      1 1246899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 020549          307 AVEESAQEFMET  318 (324)
Q Consensus       307 ~i~~~~~~~~~~  318 (324)
                      .|.+.+......
T Consensus       164 ~l~~~~~~~~~~  175 (181)
T 3tw8_B          164 CITELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            999988766544

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.82  E-value=1.7e-20  Score=158.30  Aligned_cols=166  Identities=14%  Similarity=0.130  Sum_probs=95.6

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      .....++|+|+|.+|||||||+++|++..+....       .++.....+...                       +...
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------~~~~~~~~~~~~-----------------------~~~~   68 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-------EPENPEDTYERR-----------------------IMVD   68 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-------TTTSCTTEEEEE-----------------------EEET
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccC-------CCCcccceEEEE-----------------------EEEC
Confidence            3456689999999999999999999865443110       000000000000                       0000


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHH-HHhccCCcEEEEEEcCCCC--CCchhHHHhHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE-AFASTFPTVVTYVVDTPRS--ANPMTFMSNML  221 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~-~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~  221 (324)
                                        .....+.||||||+.++..      .+.. +++  .+|++++|+|....  +.....|...+
T Consensus        69 ------------------~~~~~l~i~Dt~g~~~~~~------~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i  122 (195)
T 3cbq_A           69 ------------------KEEVTLVVYDIWEQGDAGG------WLRDHCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRL  122 (195)
T ss_dssp             ------------------TEEEEEEEECCCCCSGGGH------HHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             ------------------CEEEEEEEEecCCCccchh------hhHHHhhc--cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                              1245788999999977521      1111 122  35888888887642  22223332211


Q ss_pred             HHHHHHh-hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          222 YACSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       222 ~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                         .... ..++|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.|
T Consensus       123 ---~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~Sa~~~~~  174 (195)
T 3cbq_A          123 ---RAGRPHHDLPVILVGNKSDLARSREVS--LEEGRHLAG---------------------T--LSCKHIETSAALHHN  174 (195)
T ss_dssp             ---HHHSTTSCCCEEEEEECTTCTTTCCSC--HHHHHHHHH---------------------H--TTCEEEEEBTTTTBS
T ss_pred             ---HHhcCCCCCCEEEEeechhccccCCcC--HHHHHHHHH---------------------H--hCCEEEEEcCCCCCC
Confidence               1111 2479999999999997543210  011111111                     1  136899999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQE  314 (324)
Q Consensus       301 v~~l~~~i~~~~~~  314 (324)
                      |+++|+.|.+.+..
T Consensus       175 v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          175 TRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.82  E-value=2.3e-20  Score=152.81  Aligned_cols=162  Identities=15%  Similarity=0.163  Sum_probs=97.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|++|||||||+++|++..+......+       .. ..+..    ..                  +...   
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~-~~~~~----~~------------------~~~~---   51 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT-------IG-ASFMT----KT------------------VQYQ---   51 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCC-------CS-EEEEE----EE------------------EEET---
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-------ee-EEEEE----EE------------------EEEC---
Confidence            3478999999999999999999988654321110       00 00000    00                  0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.++..  ..    ...+  ..+|++++|+|........ ....++..+...
T Consensus        52 ---------------~~~~~~~~~Dt~G~~~~~~--~~----~~~~--~~~~~~i~v~d~~~~~s~~-~~~~~~~~l~~~  107 (170)
T 1z0j_A           52 ---------------NELHKFLIWDTAGLERFRA--LA----PMYY--RGSAAAIIVYDITKEETFS-TLKNWVRELRQH  107 (170)
T ss_dssp             ---------------TEEEEEEEEEECCSGGGGG--GT----HHHH--TTCSEEEEEEETTCHHHHH-HHHHHHHHHHHH
T ss_pred             ---------------CeEEEEEEEcCCCchhhhc--cc----HhhC--cCCCEEEEEEECcCHHHHH-HHHHHHHHHHHh
Confidence                           1235788999999876521  11    1112  3468999999986542111 111122222333


Q ss_pred             hhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      .....|+++|+||+|+.+.... .+.   ...+.                      . ..+.+++++||++|.|++++++
T Consensus       108 ~~~~~~iilv~nK~Dl~~~~~v~~~~---~~~~~----------------------~-~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A          108 GPPSIVVAIAGNKCDLTDVREVMERD---AKDYA----------------------D-SIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             SCTTSEEEEEEECTTCGGGCCSCHHH---HHHHH----------------------H-HTTCEEEECBTTTTBSHHHHHH
T ss_pred             CCCCCcEEEEEECCccccccccCHHH---HHHHH----------------------H-HcCCEEEEEeCCCCcCHHHHHH
Confidence            3457899999999999764321 111   11111                      1 1246899999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.82  E-value=6.9e-21  Score=159.56  Aligned_cols=162  Identities=12%  Similarity=0.118  Sum_probs=94.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+|+|++|||||||+++|++..+...+.+       +.. ..+...                       +... 
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~-------t~~-~~~~~~-----------------------~~~~-   65 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDP-------NLE-DTYSSE-----------------------ETVD-   65 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT-------TCC-EEEEEE-----------------------EEET-
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC-------Ccc-ceeeEE-----------------------EEEC-
Confidence            34568999999999999999999998865432211       000 000000                       0000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~  223 (324)
                                       .....+.||||||++++..   .    ...+  ..+|++++|+|....  +.....|...+  
T Consensus        66 -----------------~~~~~l~i~Dt~G~~~~~~---~----~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i--  117 (187)
T 3c5c_A           66 -----------------HQPVHLRVMDTADLDTPRN---C----ERYL--NWAHAFLVVYSVDSRQSFDSSSSYLELL--  117 (187)
T ss_dssp             -----------------TEEEEEEEEECCC---CCC---T----HHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHH--
T ss_pred             -----------------CEEEEEEEEECCCCCcchh---H----HHHH--hhCCEEEEEEECCCHHHHHHHHHHHHHH--
Confidence                             1245788999999887521   1    1223  235788888887642  22222332222  


Q ss_pred             HHHHh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecc-ccCC
Q 020549          224 CSILY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSS-VSGA  299 (324)
Q Consensus       224 ~~~~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA-~~g~  299 (324)
                       ....   ..++|+++|+||+|+.......  .++...+.+                     .  .+.+++++|| ++|.
T Consensus       118 -~~~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A          118 -ALHAKETQRSIPALLLGNKLDMAQYRQVT--KAEGVALAG---------------------R--FGCLFFEVSACLDFE  171 (187)
T ss_dssp             -HHHHHHHCCCCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H--HTCEEEECCSSSCSH
T ss_pred             -HHHhhccCCCCCEEEEEECcchhhcCccC--HHHHHHHHH---------------------H--cCCcEEEEeecCccc
Confidence             2221   2589999999999996532110  011111111                     1  1368999999 8999


Q ss_pred             ChHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQ  313 (324)
Q Consensus       300 gv~~l~~~i~~~~~  313 (324)
                      ||+++|+.|.+.+.
T Consensus       172 gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          172 HVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.82  E-value=2.3e-20  Score=165.78  Aligned_cols=163  Identities=20%  Similarity=0.257  Sum_probs=101.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+|+|++..+..+       ..++++.....                        +.+.     
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~-------~~~~~t~~~~~------------------------~~~~-----   46 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVG-------NWPGVTVEKKE------------------------GIME-----   46 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEE-------ECTTSSCEEEE------------------------EEEE-----
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccC-------CCCCeEEEeeE------------------------EEEE-----
Confidence            46899999999999999999998754211       11111110000                        0000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    ..+..+.||||||+.++............++....+|++++|+|+......       +.....+.
T Consensus        47 --------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~-------~~~~~~~~  105 (271)
T 3k53_A           47 --------------YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRN-------LFLTLELF  105 (271)
T ss_dssp             --------------ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH-------HHHHHHHH
T ss_pred             --------------ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhh-------HHHHHHHH
Confidence                          124568999999998763322222223333444668999999999764211       11122333


Q ss_pred             hcC-CCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          229 KTR-LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       229 ~~~-~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ..+ .|+++|+||+|+........   ....+.+                      .+ +.+++++||++|.|+++++..
T Consensus       106 ~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~----------------------~l-g~~~~~~Sa~~g~gi~~l~~~  159 (271)
T 3k53_A          106 EMEVKNIILVLNKFDLLKKKGAKI---DIKKMRK----------------------EL-GVPVIPTNAKKGEGVEELKRM  159 (271)
T ss_dssp             HTTCCSEEEEEECHHHHHHHTCCC---CHHHHHH----------------------HH-SSCEEECBGGGTBTHHHHHHH
T ss_pred             hcCCCCEEEEEEChhcCcccccHH---HHHHHHH----------------------Hc-CCcEEEEEeCCCCCHHHHHHH
Confidence            455 99999999999865432110   1111111                      11 478999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+..
T Consensus       160 i~~~~~~  166 (271)
T 3k53_A          160 IALMAEG  166 (271)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.82  E-value=3.6e-20  Score=153.88  Aligned_cols=162  Identities=23%  Similarity=0.240  Sum_probs=94.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+++|++..+..        ..++.. ....                        .+.    
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-~~~~------------------------~~~----   58 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVT--------TKPTIG-FNVE------------------------TLS----   58 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEE--------ECSSTT-CCEE------------------------EEE----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCc--------cCCcCc-cceE------------------------EEE----
Confidence            467899999999999999999998765421        001110 0000                        000    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      ..+..+.+|||||+.++..  ....    .  -..+|++++|+|+.....-.. ....+.  ..
T Consensus        59 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~----~--~~~~d~ii~v~d~~~~~s~~~-~~~~~~--~~  111 (183)
T 1moz_A           59 ----------------YKNLKLNVWDLGGQTSIRP--YWRC----Y--YADTAAVIFVVDSTDKDRMST-ASKELH--LM  111 (183)
T ss_dssp             ----------------ETTEEEEEEEEC----CCT--TGGG----T--TTTEEEEEEEEETTCTTTHHH-HHHHHH--HH
T ss_pred             ----------------ECCEEEEEEECCCCHhHHH--HHHH----H--hccCCEEEEEEECCCHHHHHH-HHHHHH--HH
Confidence                            1246789999999877521  1100    0  124689999999876532211 111121  11


Q ss_pred             Hh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChH
Q 020549          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       227 ~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~  302 (324)
                      +.   ..+.|+++|+||+|+.......++.+.+.                     ..  . .....+++++||++|.|++
T Consensus       112 ~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~---------------------~~--~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A          112 LQEEELQDAALLVFANKQDQPGALSASEVSKELN---------------------LV--ELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             TTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT---------------------TT--TCCSSCEEEEEEBGGGTBTHH
T ss_pred             HcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhC---------------------cc--cccCCceEEEEccCCCCcCHH
Confidence            21   36799999999999976422111111110                     00  0 0123479999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      ++++.|.+.+.+.
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.82  E-value=9e-20  Score=153.69  Aligned_cols=112  Identities=18%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+.||||||+.++..      .....+  ..+|++++|+|+........ ...++.  ......+.|+++|+||+|+..
T Consensus        93 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~s~~~-~~~~~~--~i~~~~~~piilv~NK~D~~~  161 (208)
T 3clv_A           93 IKFDIWDTAGQERYAS------IVPLYY--RGATCAIVVFDISNSNTLDR-AKTWVN--QLKISSNYIIILVANKIDKNK  161 (208)
T ss_dssp             EEEEEEECTTGGGCTT------THHHHH--TTCSEEEEEEETTCHHHHHH-HHHHHH--HHHHHSCCEEEEEEECTTCC-
T ss_pred             eEEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHH--HHHhhCCCcEEEEEECCCccc
Confidence            6789999999877521      111122  34689999999876421111 111121  112224599999999999322


Q ss_pred             hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ....   .++...+.+                     .  .+.+++++||++|.|++++++.|.+.+..
T Consensus       162 ~~~~---~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          162 FQVD---ILEVQKYAQ---------------------D--NNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CCSC---HHHHHHHHH---------------------H--TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCC---HHHHHHHHH---------------------H--cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            1111   111111111                     1  24689999999999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.82  E-value=4e-21  Score=164.64  Aligned_cols=168  Identities=15%  Similarity=0.163  Sum_probs=99.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|.+|||||||+++|++..+......+     .+.......                         ....  
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-----~~~~~~~~~-------------------------~~~~--   56 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNAT-----VGAVNHPVT-------------------------FLDD--   56 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETT-----TTEEEEEEE-------------------------EEBT--
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----cceeeEEEE-------------------------EEeC--
Confidence            45689999999999999999999987654211100     000000000                         0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc--hhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--MTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~--~~~~~~~~~~~  224 (324)
                          +           .....+.||||||+.++..  ....    .+  ..+|++++|+|.......  ...|   +..+
T Consensus        57 ----~-----------~~~~~~~l~Dt~G~~~~~~--~~~~----~~--~~~d~~i~v~d~~~~~s~~~~~~~---~~~~  110 (218)
T 4djt_A           57 ----Q-----------GNVIKFNVWDTAGQEKKAV--LKDV----YY--IGASGAILFFDVTSRITCQNLARW---VKEF  110 (218)
T ss_dssp             ----T-----------SCEEEEEEEEECSGGGTSC--CCHH----HH--TTCSEEEEEEETTCHHHHHTHHHH---HHHH
T ss_pred             ----C-----------CcEEEEEEEecCCchhhch--HHHH----Hh--hcCCEEEEEEeCCCHHHHHHHHHH---HHHH
Confidence                0           1125689999999877521  1111    11  336899999998764322  2233   2223


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ......++|+++|+||+|+........  .....+                       ....+.+++++||++|.|++++
T Consensus       111 ~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A          111 QAVVGNEAPIVVCANKIDIKNRQKISK--KLVMEV-----------------------LKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             HHHHCSSSCEEEEEECTTCC----CCH--HHHHHH-----------------------TTTCCCEEEEEBTTTTBTTTHH
T ss_pred             HHhcCCCCCEEEEEECCCCccccccCH--HHHHHH-----------------------HHHcCCcEEEEecCCCCCHHHH
Confidence            344455799999999999976532110  011100                       0113468999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFME  317 (324)
Q Consensus       305 ~~~i~~~~~~~~~  317 (324)
                      |..|.+.+.....
T Consensus       166 ~~~l~~~~~~~~~  178 (218)
T 4djt_A          166 FLHLARIFTGRPD  178 (218)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHHhcccc
Confidence            9999998876443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.82  E-value=3.2e-20  Score=150.99  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=94.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|++..+.....       ++.. ..+...                       +...     
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-------~~~~-~~~~~~-----------------------~~~~-----   47 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-------PTIE-DSYRKQ-----------------------VVID-----   47 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-------TTCC-EEEEEE-----------------------EEET-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCccccC-------Cccc-eEEEEE-----------------------EEEC-----
Confidence            679999999999999999999876543211       0000 000000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh-
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-  228 (324)
                                   .....+.||||||+.++..      .....+.  .+|.+++++|....... ......+..+.... 
T Consensus        48 -------------~~~~~~~~~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~  105 (166)
T 2ce2_X           48 -------------GETCLLDILDTAGQEEYSA------MRDQYMR--TGEGFLCVFAINNTKSF-EDIHQYREQIKRVKD  105 (166)
T ss_dssp             -------------TEEEEEEEEECCCCSSCCH------HHHHHHH--HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT
T ss_pred             -------------CEEEEEEEEECCCchhhhH------HHHHhhc--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC
Confidence                         1235678999999877521      1111222  25889999997643211 11111122122222 


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..++|+++|+||+|+.......+.   ...+.+                     .  .+.+++++||++|.|++++++.|
T Consensus       106 ~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X          106 SDDVPMVLVGNKSDLAARTVESRQ---AQDLAR---------------------S--YGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             CSCCCEEEEEECTTCSCCCSCHHH---HHHHHH---------------------H--HTCCEEEECTTTCTTHHHHHHHH
T ss_pred             CCCCcEEEEEEchhhhhcccCHHH---HHHHHH---------------------H--cCCeEEEecCCCCCCHHHHHHHH
Confidence            237999999999999863221111   111111                     1  13689999999999999999999


Q ss_pred             HHHHH
Q 020549          309 EESAQ  313 (324)
Q Consensus       309 ~~~~~  313 (324)
                      .+.+.
T Consensus       160 ~~~~~  164 (166)
T 2ce2_X          160 VREIR  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.82  E-value=4.7e-20  Score=154.35  Aligned_cols=164  Identities=15%  Similarity=0.217  Sum_probs=94.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|.+|||||||+++|++..+.....       ++. ...+...                       +...   
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-------~t~-~~~~~~~-----------------------~~~~---   65 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-------PTI-EDSYRKQ-----------------------VVID---   65 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC-------TTC-CEEEEEE-----------------------EEET---
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccC-------Ccc-ceEEEEE-----------------------EEEC---
Confidence            34789999999999999999999876543110       000 0000000                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~  225 (324)
                                     .....+.||||||+.++..      .....  -..+|++++|+|......  ....|...   +.
T Consensus        66 ---------------~~~~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~---i~  119 (190)
T 3con_A           66 ---------------GETCLLDILDTAGQEEYSA------MRDQY--MRTGEGFLCVFAINNSKSFADINLYREQ---IK  119 (190)
T ss_dssp             ---------------TEEEEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHHHHHHHH---HH
T ss_pred             ---------------CEEEEEEEEECCChHHHHH------HHHHh--hCcCCEEEEEEECcCHHHHHHHHHHHHH---HH
Confidence                           1235688999999876521      11111  134689999999865421  12223222   22


Q ss_pred             HHh-hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          226 ILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       226 ~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ... ..++|+++|+||+|+.......+.   ...+.+                     .  .+.+++++||++|.|++++
T Consensus       120 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A          120 RVKDSDDVPMVLVGNKCDLPTRTVDTKQ---AHELAK---------------------S--YGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             HHHTCSCCCEEEEEECTTCSCCCSCHHH---HHHHHH---------------------H--HTCCEEECCTTTCTTHHHH
T ss_pred             HHhCCCCCeEEEEEECCcCCcccCCHHH---HHHHHH---------------------H--cCCeEEEEeCCCCCCHHHH
Confidence            222 247999999999999763211111   111111                     1  1368999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFME  317 (324)
Q Consensus       305 ~~~i~~~~~~~~~  317 (324)
                      ++.|.+.+.....
T Consensus       174 ~~~l~~~~~~~~~  186 (190)
T 3con_A          174 FYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.82  E-value=2.1e-20  Score=177.95  Aligned_cols=165  Identities=19%  Similarity=0.237  Sum_probs=89.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +.+++|+|+|++|||||||+|+|++.....            ++.+++++    ++..              ...+.   
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------vs~~~gtT----~d~~--------------~~~i~---  277 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAI------------VSHMPGTT----RDYI--------------EECFI---  277 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEE---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCce----EEEE--------------EEEEE---
Confidence            456889999999999999999999874321            23333332    1110              00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHH-HHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                      ..+..+.||||||+.++  ....... +...... ..+|++++|+|+........ .......+
T Consensus       278 ----------------~~g~~l~liDT~G~~~~--~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l  338 (476)
T 3gee_A          278 ----------------HDKTMFRLTDTAGLREA--GEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELK  338 (476)
T ss_dssp             ----------------ETTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHH
T ss_pred             ----------------ECCeEEEEEECCCCCcc--hhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHH
Confidence                            12567899999998775  2211111 1111211 45799999999988765422 11112222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+.  ++|+|+|+||+|+........  +.+.                         .. ...+++++||++|.||++|
T Consensus       339 ~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~-------------------------~~-~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          339 AAHP--AAKFLTVANKLDRAANADALI--RAIA-------------------------DG-TGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             HHCT--TSEEEEEEECTTSCTTTHHHH--HHHH-------------------------HH-HTSCEEECBTTTTBSHHHH
T ss_pred             HhcC--CCCEEEEEECcCCCCccchhH--HHHH-------------------------hc-CCCceEEEEECCCCCHHHH
Confidence            2222  799999999999987653211  1111                         11 1368999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      ++.|.+.+.
T Consensus       389 ~~~i~~~~~  397 (476)
T 3gee_A          389 KQHMGDLVK  397 (476)
T ss_dssp             HHHHTHHHH
T ss_pred             HHHHHHHHh
Confidence            999999886

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.82  E-value=1.7e-19  Score=150.65  Aligned_cols=171  Identities=19%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+....             .+..+ .+..                    ..      
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~~~~t-~~~~--------------------~~------   41 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK-------------RPGVT-RKII--------------------EI------   41 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSS-------------STTCT-TSCE--------------------EE------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCC-------------CCCcc-ceeE--------------------EE------
Confidence            57999999999999999999987654321             11111 0000                    00      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-----hhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhH--
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-----ASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNM--  220 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-----~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~--  220 (324)
                                    ....+.||||||+.....+.     ........++..  ..++++++++|..........|...  
T Consensus        42 --------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~  107 (190)
T 2cxx_A           42 --------------EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE  107 (190)
T ss_dssp             --------------EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC
T ss_pred             --------------ecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCc
Confidence                          01178899999964331111     111122223332  3357888888874322211333321  


Q ss_pred             ----HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeecc
Q 020549          221 ----LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSS  295 (324)
Q Consensus       221 ----~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA  295 (324)
                          ......+...++|+++|+||+|+....  .+.   ...+.+              .++.   .+.. ..+++++||
T Consensus       108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~---~~~~~~--------------~~~~---~~~~~~~~~~~~Sa  165 (190)
T 2cxx_A          108 IPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEV---INFLAE--------------KFEV---PLSEIDKVFIPISA  165 (190)
T ss_dssp             CCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHH---HHHHHH--------------HHTC---CGGGHHHHEEECCT
T ss_pred             cHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHH---HHHHHH--------------Hhhh---hhhccCCcEEEEec
Confidence                122234445689999999999998754  111   111111              1111   0000 236899999


Q ss_pred             ccCCChHHHHHHHHHHHHHHH
Q 020549          296 VSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       296 ~~g~gv~~l~~~i~~~~~~~~  316 (324)
                      ++|.|++++|+.|.+.+.+..
T Consensus       166 ~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          166 KFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             TTCTTHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHhcchhh
Confidence            999999999999999886643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=5.8e-20  Score=154.83  Aligned_cols=164  Identities=16%  Similarity=0.203  Sum_probs=98.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+|+|++|||||||+++|++..+...+.+       +.. ..+...                       +...  
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-------t~~-~~~~~~-----------------------~~~~--   72 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP-------TLE-STYRHQ-----------------------ATID--   72 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-------TCC-EEEEEE-----------------------EEET--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCC-------CCC-ceEEEE-----------------------EEEC--
Confidence            4568999999999999999999998866432111       000 000000                       0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.+.       ......++  .+|++++|+|.....  .....|...+.  
T Consensus        73 ----------------~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~--  125 (196)
T 2atv_A           73 ----------------DEVVSMEILDTAGQEDT-------IQREGHMR--WGEGFVLVYDITDRGSFEEVLPLKNILD--  125 (196)
T ss_dssp             ----------------TEEEEEEEEECCCCCCC-------HHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHH--
T ss_pred             ----------------CEEEEEEEEECCCCCcc-------cchhhhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHH--
Confidence                            12457889999998761       11111222  258999999986532  22223322221  


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC-ChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~-gv~~  303 (324)
                      ......++|+++|+||+|+.......  .+....+.+                     .+  +.+++++||++|. |+++
T Consensus       126 ~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~---------------------~~--~~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          126 EIKKPKNVTLILVGNKADLDHSRQVS--TEEGEKLAT---------------------EL--ACAFYECSACTGEGNITE  180 (196)
T ss_dssp             HHHTTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------HH--TSEEEECCTTTCTTCHHH
T ss_pred             HhhCCCCCcEEEEEECcccccccccC--HHHHHHHHH---------------------Hh--CCeEEEECCCcCCcCHHH
Confidence            11223589999999999997642110  011111111                     11  4689999999999 9999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      +|+.|.+.+.+.
T Consensus       181 l~~~l~~~i~~~  192 (196)
T 2atv_A          181 IFYELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.82  E-value=4e-20  Score=151.29  Aligned_cols=164  Identities=16%  Similarity=0.203  Sum_probs=95.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|++|||||||+++|++..+.....+       +.. ..+..    .                  .+...    
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-------~~~-~~~~~----~------------------~~~~~----   48 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP-------TIG-AAFLT----Q------------------RVTIN----   48 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC-------CSS-EEEEE----E------------------EEEET----
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-------ccc-eeEEE----E------------------EEEEC----
Confidence            36899999999999999999998765432211       000 00000    0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    .....+.||||||+.++..      .....+  ..+|++++|+|+...... ......+..+....
T Consensus        49 --------------~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~  105 (170)
T 1ek0_A           49 --------------EHTVKFEIWDTAGQERFAS------LAPXYY--RNAQAALVVYDVTKPQSF-IKARHWVKELHEQA  105 (170)
T ss_dssp             --------------TEEEEEEEEEECCSGGGGG------GHHHHH--TTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS
T ss_pred             --------------CEEEEEEEEECCCChhhhh------hhhhhh--ccCcEEEEEEecCChHHH-HHHHHHHHHHHHhc
Confidence                          1245789999999877521      111222  346899999998753211 11111122222222


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHH-HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWM-QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ..+.|+++|+||+|+.......... +....+.                      . ..+.+++++||++|.|++++|+.
T Consensus       106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1ek0_A          106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA----------------------E-EKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH----------------------H-HHTCEEEECCTTTCTTHHHHHHH
T ss_pred             CCCCcEEEEEECCCccccccccCCCHHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHHHH
Confidence            3579999999999997542100000 0111110                      1 12468999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |.+.+
T Consensus       163 l~~~i  167 (170)
T 1ek0_A          163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            98754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.82  E-value=3.2e-20  Score=155.56  Aligned_cols=161  Identities=19%  Similarity=0.290  Sum_probs=95.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhccc-CCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ..+.++|+|+|.+|||||||+++|++... .....       ++.. ...      .                  .+.  
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~t~~-~~~------~------------------~~~--   63 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-------PTIG-FSI------E------------------KFK--   63 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-------CCSS-EEE------E------------------EEE--
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-------Cccc-eeE------E------------------EEE--
Confidence            44678999999999999999999998762 22111       0010 000      0                  000  


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLY  222 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~  222 (324)
                                        ..+..+.||||||++++..  ...    ..+  ..+|++++|+|+...  +.....|   +.
T Consensus        64 ------------------~~~~~~~l~Dt~G~~~~~~--~~~----~~~--~~~d~ii~v~d~~~~~s~~~~~~~---~~  114 (190)
T 2h57_A           64 ------------------SSSLSFTVFDMSGQGRYRN--LWE----HYY--KEGQAIIFVIDSSDRLRMVVAKEE---LD  114 (190)
T ss_dssp             ------------------CSSCEEEEEEECCSTTTGG--GGG----GGG--GGCSEEEEEEETTCHHHHHHHHHH---HH
T ss_pred             ------------------ECCEEEEEEECCCCHHHHH--HHH----HHH--hcCCEEEEEEECCCHHHHHHHHHH---HH
Confidence                              1256889999999887621  111    111  336999999998763  2111122   11


Q ss_pred             HHHHHhh-----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccc
Q 020549          223 ACSILYK-----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSV  296 (324)
Q Consensus       223 ~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~  296 (324)
                        ..+..     .++|+++|+||+|+.......+..+.+. + .                     .+ ....+++++||+
T Consensus       115 --~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~-~---------------------~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A          115 --TLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLC-L-E---------------------NIKDKPWHICASDAI  169 (190)
T ss_dssp             --HHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHT-G-G---------------------GCCSSCEEEEECBTT
T ss_pred             --HHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhC-h-h---------------------hccCCceEEEEccCC
Confidence              11222     5799999999999976422211111110 0 0                     10 124689999999


Q ss_pred             cCCChHHHHHHHHHHHHH
Q 020549          297 SGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       297 ~g~gv~~l~~~i~~~~~~  314 (324)
                      +|.||+++++.|.+.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999987643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.82  E-value=2.1e-20  Score=156.31  Aligned_cols=162  Identities=14%  Similarity=0.147  Sum_probs=97.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+|+|++|||||||+++|++..+.....+       +...+  ...+.                       .. 
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~-------t~~~~--~~~~~-----------------------~~-   63 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP-------EGGRF--KKEIV-----------------------VD-   63 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT-------TCEEE--EEEEE-----------------------ET-
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC-------CcceE--EEEEE-----------------------EC-
Confidence            44568999999999999999999999876532211       11000  00000                       00 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~  223 (324)
                                       .....+.||||||++++.           .++  .+|++++|+|.....  .....|   +..
T Consensus        64 -----------------~~~~~l~i~Dt~G~~~~~-----------~~~--~~~~~i~v~d~~~~~s~~~~~~~---~~~  110 (184)
T 3ihw_A           64 -----------------GQSYLLLIRDEGGPPELQ-----------FAA--WVDAVVFVFSLEDEISFQTVYNY---FLR  110 (184)
T ss_dssp             -----------------TEEEEEEEEECSSSCCHH-----------HHH--HCSEEEEEEETTCHHHHHHHHHH---HHH
T ss_pred             -----------------CEEEEEEEEECCCChhhh-----------eec--CCCEEEEEEECcCHHHHHHHHHH---HHH
Confidence                             123567899999998762           111  258999999986532  111222   211


Q ss_pred             HHHHh-hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          224 CSILY-KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       224 ~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      +.... ..+.|+++|+||+|+.......-..+....+.                      ..+...+++++||++|.||+
T Consensus       111 i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----------------------~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A          111 LCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS----------------------TDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             HHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----------------------HHTTTCEEEEEBTTTTBTHH
T ss_pred             HHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH----------------------HHcCCCeEEEecCCCCCCHH
Confidence            11111 15789999999999953211000001111111                      11234789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      ++|..|.+.+...
T Consensus       169 ~lf~~l~~~i~~~  181 (184)
T 3ihw_A          169 RVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.82  E-value=1.5e-19  Score=171.30  Aligned_cols=161  Identities=19%  Similarity=0.203  Sum_probs=97.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+|+|.||||||||+|+|++.....            +...++.+    +++.              .+.+.      
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------v~~~~g~T----~d~~--------------~~~~~------   45 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------VEDEEGVT----RDPV--------------QDTVE------   45 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC------------------------------CCS--------------EEEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCce------------ecCCCCCc----ccee--------------eEEEE------
Confidence            479999999999999999999875432            22333332    1110              00000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh--ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   ..+..+.||||||++... .......+.....  -..+|++++|+|+..+....+.+.     ...+
T Consensus        46 -------------~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i-----~~~l  106 (439)
T 1mky_A           46 -------------WYGKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESL-----ADFL  106 (439)
T ss_dssp             -------------ETTEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHH-----HHHH
T ss_pred             -------------ECCeEEEEEECCCccccc-cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH-----HHHH
Confidence                         224578999999987531 1111122222211  245799999999988876655331     1234


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhH-HHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDF-EVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ...++|+++|+||+|+....  .   ... .                         ++  ....+++++||++|.|+++|
T Consensus       107 ~~~~~p~ilv~NK~D~~~~~--~---~~~~~-------------------------~~~~lg~~~~~~iSA~~g~gv~~L  156 (439)
T 1mky_A          107 RKSTVDTILVANKAENLREF--E---REVKP-------------------------ELYSLGFGEPIPVSAEHNINLDTM  156 (439)
T ss_dssp             HHHTCCEEEEEESCCSHHHH--H---HHTHH-------------------------HHGGGSSCSCEECBTTTTBSHHHH
T ss_pred             HHcCCCEEEEEeCCCCcccc--H---HHHHH-------------------------HHHhcCCCCEEEEeccCCCCHHHH
Confidence            44689999999999985320  0   001 1                         11  12237899999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      ++.|.+.+++.
T Consensus       157 ~~~i~~~l~~~  167 (439)
T 1mky_A          157 LETIIKKLEEK  167 (439)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHhcccc
Confidence            99999988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.82  E-value=7.7e-20  Score=156.49  Aligned_cols=174  Identities=20%  Similarity=0.196  Sum_probs=100.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+|+|++|||||||+++|++..+......++. .+.....+.+..    .              .++++...   
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~----~--------------~~~~~~~~---   80 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG-IDFREKRVVYNA----Q--------------GPNGSSGK---   80 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEE-EEEEEEEEEEEC-------------------------CC---
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCcee-EEEEEEEEEECC----c--------------cccccccC---
Confidence            3458899999999999999999998877544333221 000000000000    0              00000000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..      .....+  ..+|++++|+|+.....    .......+..
T Consensus        81 ----------------~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~iilV~D~~~~~s----~~~~~~~l~~  132 (217)
T 2f7s_A           81 ----------------AFKVHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLMFDLTSQQS----FLNVRNWMSQ  132 (217)
T ss_dssp             ----------------EEEEEEEEEEEESHHHHHH------HHHHHH--TTCCEEEEEEETTCHHH----HHHHHHHHHT
T ss_pred             ----------------ceeEEEEEEECCCcHhHHh------HHHHHh--cCCCEEEEEEECcCHHH----HHHHHHHHHH
Confidence                            1135789999999766411      111222  34699999999865321    1111111122


Q ss_pred             Hhh----cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          227 LYK----TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       227 ~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      +..    .++|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.||+
T Consensus       133 i~~~~~~~~~piilV~NK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~g~gi~  187 (217)
T 2f7s_A          133 LQANAYCENPDIVLIGNKADLPDQREVN--ERQARELAD---------------------K--YGIPYFETSAATGQNVE  187 (217)
T ss_dssp             CCCCCTTTCCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCCEEEEBTTTTBTHH
T ss_pred             HHHhcCcCCCCEEEEEECCccccccccC--HHHHHHHHH---------------------H--CCCcEEEEECCCCCCHH
Confidence            221    578999999999997542210  011111111                     1  24689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      ++|+.|.+.+.+.
T Consensus       188 ~l~~~l~~~i~~~  200 (217)
T 2f7s_A          188 KAVETLLDLIMKR  200 (217)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.82  E-value=3.8e-20  Score=154.87  Aligned_cols=161  Identities=20%  Similarity=0.239  Sum_probs=98.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+++|++|||||||+++|++..+..        ..++.. ....                         .+.   
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------~~~t~~-~~~~-------------------------~~~---   62 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--------TVPTVG-VNLE-------------------------TLQ---   62 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--------ECSSTT-CCEE-------------------------EEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC--------cCCCCc-eEEE-------------------------EEE---
Confidence            467899999999999999999998764421        011110 0000                         000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||++++..  ....    .  -..+|++++|+|+.+...-.. ....+.  ..
T Consensus        63 ----------------~~~~~~~~~Dt~G~~~~~~--~~~~----~--~~~~d~ii~v~d~~~~~s~~~-~~~~~~--~~  115 (189)
T 2x77_A           63 ----------------YKNISFEVWDLGGQTGVRP--YWRC----Y--FSDTDAVIYVVDSTDRDRMGV-AKHELY--AL  115 (189)
T ss_dssp             ----------------ETTEEEEEEEECCSSSSCC--CCSS----S--STTCCEEEEEEETTCCTTHHH-HHHHHH--HH
T ss_pred             ----------------ECCEEEEEEECCCCHhHHH--HHHH----H--hhcCCEEEEEEeCCCHHHHHH-HHHHHH--HH
Confidence                            1256789999999877521  1000    0  124699999999876532211 111111  11


Q ss_pred             Hh---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCCh
Q 020549          227 LY---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       227 ~~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv  301 (324)
                      +.   ..+.|+++|+||+|+.......++.+.+.                     .   .+  ....+++++||++|.|+
T Consensus       116 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~~~gi  171 (189)
T 2x77_A          116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQLG---------------------V---SSIMNRTWTIVKSSSKTGDGL  171 (189)
T ss_dssp             HTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTH
T ss_pred             HhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhC---------------------h---hhccCCceEEEEccCCCccCH
Confidence            22   24799999999999986532211111110                     0   00  11347999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQEF  315 (324)
Q Consensus       302 ~~l~~~i~~~~~~~  315 (324)
                      +++++.|.+.+.+.
T Consensus       172 ~~l~~~l~~~i~~~  185 (189)
T 2x77_A          172 VEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.81  E-value=3e-20  Score=155.58  Aligned_cols=166  Identities=18%  Similarity=0.214  Sum_probs=95.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+|+|.+|||||||+++|++..+......+       .. ..+..    .                  .+...  
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~----~------------------~~~~~--   65 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT-------IG-VDFRE----R------------------AVDID--   65 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCC-------CS-CCEEE----E------------------EEEET--
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-------cc-eEEEE----E------------------EEEEC--
Confidence            35689999999999999999999987665322110       00 00000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++.  ...   ....+  ..+|++++|+|+.....  ....|...+  .
T Consensus        66 ----------------~~~~~~~l~Dt~G~~~~~--~~~---~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i--~  120 (189)
T 1z06_A           66 ----------------GERIKIQLWDTAGQERFR--KSM---VQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEEC--K  120 (189)
T ss_dssp             ----------------TEEEEEEEEECCCSHHHH--TTT---HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH--H
T ss_pred             ----------------CEEEEEEEEECCCchhhh--hhh---hHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHH--H
Confidence                            113578999999987652  111   11122  34689999999875321  122232211  1


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC---CCh
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG---AGI  301 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g---~gv  301 (324)
                      ......++|+++|+||+|+.......  .+....+.                      . ..+.+++++||++|   .||
T Consensus       121 ~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A          121 QHLLANDIPRILVGNKCDLRSAIQVP--TDLAQKFA----------------------D-THSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             HHCCCSCCCEEEEEECTTCGGGCCSC--HHHHHHHH----------------------H-HTTCCEEECCSSSGGGGSCH
T ss_pred             HhcCCCCCCEEEEEECccccccceeC--HHHHHHHH----------------------H-HcCCEEEEEeCCcCCcccCH
Confidence            22224579999999999996542210  01111111                      1 12468999999999   999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQE  314 (324)
Q Consensus       302 ~~l~~~i~~~~~~  314 (324)
                      +++|..|.+.+++
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.81  E-value=9.9e-20  Score=153.17  Aligned_cols=161  Identities=16%  Similarity=0.162  Sum_probs=92.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+..+|+|+|++|||||||+++|++..+.. ..+       ++. .... .+                        .  
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~-------t~~-~~~~-~~------------------------~--   69 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP-------TIG-FNVE-TV------------------------E--   69 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE-------ETT-EEEE-EE------------------------E--
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC-------cCc-eeEE-EE------------------------E--
Confidence            3467899999999999999999998765532 111       110 0000 00                        0  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH-
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-  224 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~-  224 (324)
                                       .....+.||||||+.++..  .    ....+  ..+|++++|+|+.....- ......+..+ 
T Consensus        70 -----------------~~~~~~~i~Dt~G~~~~~~--~----~~~~~--~~~d~iilv~D~~~~~s~-~~~~~~l~~~~  123 (192)
T 2b6h_A           70 -----------------YKNICFTVWDVGGQDKIRP--L----WRHYF--QNTQGLIFVVDSNDRERV-QESADELQKML  123 (192)
T ss_dssp             -----------------ETTEEEEEEECC-----CT--T----HHHHH--HTCCEEEEEEETTCGGGH-HHHHHHHHHHH
T ss_pred             -----------------ECCEEEEEEECCCCHhHHH--H----HHHHh--ccCCEEEEEEECCCHHHH-HHHHHHHHHHh
Confidence                             1256789999999877521  1    11122  246899999998764211 1111111111 


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~  302 (324)
                      ......+.|+++|+||+|+.......++.+.+.                     .   .+  ....+++++||++|.|++
T Consensus       124 ~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          124 QEDELRDAVLLVFANKQDMPNAMPVSELTDKLG---------------------L---QHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             TCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCSSCCEEEEECBTTTTBTHH
T ss_pred             cccccCCCeEEEEEECCCCCCCCCHHHHHHHhC---------------------c---ccccCCceEEEECcCCCcCCHH
Confidence            111124799999999999976432111111110                     0   00  123579999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          303 AYFKAVEESA  312 (324)
Q Consensus       303 ~l~~~i~~~~  312 (324)
                      ++++.|.+.+
T Consensus       180 ~l~~~l~~~i  189 (192)
T 2b6h_A          180 DGLDWLSHEL  189 (192)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.3e-20  Score=161.10  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=65.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEc--CCCCCCchhHHHhHHHHHHHH-hhcCCCeEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD--TPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD--~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~  241 (324)
                      ...+++|||+|+...+      ..+...+ ...++++++|+|  ...++.....|...+   ... ...++|+|+|+||+
T Consensus        86 ~~~l~~~Dt~g~~~~~------~~l~~~~-~~~a~~~ilVydvt~~~sf~~~~~~~~~l---~~~~~~~~~piilVgNK~  155 (211)
T 2g3y_A           86 SATIILLDMWENKGEN------EWLHDHC-MQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGNKS  155 (211)
T ss_dssp             EEEEEEECCTTTTHHH------HHHHHCC-CCCCSEEEEEEETTCHHHHHHHHHHHHHH---HTSGGGTTSCEEEEEECT
T ss_pred             eeEEEEeecCCCcchh------hhHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHH---HHHhCCCCCcEEEEEECh
Confidence            3467899999986521      1121111 122445555544  444444433342222   111 12479999999999


Q ss_pred             ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      |+.......  .+....+.                      .. .++++++|||++|.||+++|+.|.+.+..
T Consensus       156 DL~~~r~v~--~~e~~~~a----------------------~~-~~~~~~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          156 DLVRCREVS--VSEGRACA----------------------VV-FDCKFIETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             TCGGGCCSC--HHHHHHHH----------------------HH-HTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCceEe--HHHHHHHH----------------------HH-cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            997532110  00001000                      11 13689999999999999999999988753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.81  E-value=9.8e-20  Score=156.77  Aligned_cols=166  Identities=17%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+...+..++     +..   +..    .                  .+...  
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~-----~~~---~~~----~------------------~~~~~--   58 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI-----GVE---FAT----R------------------TLEIE--   58 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------CCS---EEE----E------------------EEEET--
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-----cce---eEE----E------------------EEEEC--
Confidence            345789999999999999999999987654332211     000   000    0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  ....    .  -..+|++++|+|........ ....++..+..
T Consensus        59 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~----~--~~~~d~vilV~D~~~~~s~~-~~~~~l~~i~~  113 (223)
T 3cpj_B           59 ----------------GKRIKAQIWDTAGQERYRA--ITSA----Y--YRGAVGALIVYDISKSSSYE-NCNHWLSELRE  113 (223)
T ss_dssp             ----------------TEEEEEEEECCTTTTTTTC--CCGG----G--TTTCCEEEEEEC-CCHHHHH-HHHHHHHHHHH
T ss_pred             ----------------CEEEEEEEEECCCccchhh--hHHH----H--hccCCEEEEEEeCCCHHHHH-HHHHHHHHHHH
Confidence                            1135789999999877521  1110    0  13468999999986532111 11111222222


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.......  .+....+.+                     .  .+.+++++||++|.||+++|+
T Consensus       114 ~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B          114 NADDNVAVGLIGNKSDLAHLRAVP--TEESKTFAQ---------------------E--NQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             HCC--CEEEEEECCGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCCC-CCCHHHHHH
T ss_pred             hCCCCCeEEEEEECcccccccccC--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence            223578999999999997532210  011111110                     1  246899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.+.+
T Consensus       169 ~l~~~i~~  176 (223)
T 3cpj_B          169 ELINTIYQ  176 (223)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99988753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.81  E-value=2.8e-19  Score=170.96  Aligned_cols=116  Identities=19%  Similarity=0.235  Sum_probs=80.8

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.++.      ..+...+  ..+|++++|+|+.++..+++..     .+..+...++|+|+|+||+|+.
T Consensus        72 ~~~i~iiDtPGh~~~~------~~~~~~~--~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~ip~IvviNK~Dl~  138 (482)
T 1wb1_A           72 NYRITLVDAPGHADLI------RAVVSAA--DIIDLALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNA  138 (482)
T ss_dssp             TEEEEECCCSSHHHHH------HHHHHHT--TSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSS
T ss_pred             CEEEEEEECCChHHHH------HHHHHHH--hhCCEEEEEEecCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence            4578999999976641      1222222  4579999999999887666522     2234455789999999999999


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      +.+......+++..+.+.                    . .+...+++++||++|.|+++|++.|.+.++
T Consensus       139 ~~~~~~~~~~~l~~~l~~--------------------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          139 GTEEIKRTEMIMKSILQS--------------------THNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHH--------------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhh--------------------hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            865443333333322111                    1 123578999999999999999999999876

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=3.9e-20  Score=155.76  Aligned_cols=161  Identities=14%  Similarity=0.150  Sum_probs=96.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+...+.++       .. ..+...                       +...  
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-------~~-~~~~~~-----------------------~~~~--   52 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT-------IE-DTYRQV-----------------------ISCD--   52 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCC-------CC-EEEEEE-----------------------EEET--
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCc-------cc-cceeEE-----------------------EEEC--
Confidence            35688999999999999999999987664322110       00 000000                       0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~  224 (324)
                                      .....+.||||||+.++..      .....+.  .+|++++|+|....  +.....|...+   
T Consensus        53 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i---  105 (199)
T 2gf0_A           53 ----------------KSVCTLQITDTTGSHQFPA------MQRLSIS--KGHAFILVFSVTSKQSLEELGPIYKLI---  105 (199)
T ss_dssp             ----------------TEEEEEEEEECCGGGSCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHH---
T ss_pred             ----------------CEEEEEEEEeCCChHHhHH------HHHHhhc--cCCEEEEEEECcCHHHHHHHHHHHHHH---
Confidence                            1234788999999877521      1111222  25899999998652  22222232222   


Q ss_pred             HHHh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          225 SILY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       225 ~~~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      ..+.  ..+.|+++|+||+|+.......+..   ..+..                     .  ...+++++||++|.|++
T Consensus       106 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~--~~~~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A          106 VQIKGSVEDIPVMLVGNKCDETQREVDTREA---QAVAQ---------------------E--WKCAFMETSAKMNYNVK  159 (199)
T ss_dssp             HHHHSCGGGSCEEEEEECTTCSSCSSCHHHH---HHHHH---------------------H--HTCEEEECBTTTTBSHH
T ss_pred             HHHhcCCCCCCEEEEEECccCCccccCHHHH---HHHHH---------------------H--hCCeEEEEecCCCCCHH
Confidence            2222  2478999999999997632111111   11111                     1  13689999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          303 AYFKAVEESAQ  313 (324)
Q Consensus       303 ~l~~~i~~~~~  313 (324)
                      ++++.|.+.+.
T Consensus       160 ~l~~~l~~~~~  170 (199)
T 2gf0_A          160 ELFQELLTLET  170 (199)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.81  E-value=1.9e-20  Score=160.94  Aligned_cols=166  Identities=20%  Similarity=0.216  Sum_probs=100.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ....++|+++|.+|||||||+++|+...+......     .++.+......                         ... 
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~-----t~~~~~~~~~~-------------------------~~~-   60 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA-----TLGVEVHPLVF-------------------------HTN-   60 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEET-----TTTEEEEEEEE-------------------------EET-
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-----ccceeEEEEEE-------------------------EEC-
Confidence            34568999999999999999999766554421110     00000000000                         000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~  223 (324)
                                       .....+.||||||+.++..  ...    ..+  ..+|++++|+|......  ....|...+  
T Consensus        61 -----------------~~~~~~~i~Dt~G~~~~~~--~~~----~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~--  113 (221)
T 3gj0_A           61 -----------------RGPIKFNVWDTAGQEKFGG--LRD----GYY--IQAQCAIIMFDVTSRVTYKNVPNWHRDL--  113 (221)
T ss_dssp             -----------------TEEEEEEEEEECSGGGTSC--CCH----HHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH--
T ss_pred             -----------------CEEEEEEEEeCCChHHHhH--HHH----HHH--hcCCEEEEEEECCCHHHHHHHHHHHHHH--
Confidence                             1245789999999877521  111    111  24689999999876321  122332222  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                       ... ..++|+++|+||+|+.+.....    ....+              ..         ..+.+++++||++|.||++
T Consensus       114 -~~~-~~~~p~ilv~nK~Dl~~~~~~~----~~~~~--------------~~---------~~~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A          114 -VRV-CENIPIVLCGNKVDIKDRKVKA----KSIVF--------------HR---------KKNLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             -HHH-STTCCEEEEEECTTSSSCSSCG----GGCCH--------------HH---------HHTCEEEECBGGGTBTTTH
T ss_pred             -HHh-CCCCCEEEEEECCccccccccH----HHHHH--------------HH---------HcCCEEEEEeCCCCCCHHH
Confidence             111 2379999999999997643211    11100              01         1246899999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 020549          304 YFKAVEESAQEFMET  318 (324)
Q Consensus       304 l~~~i~~~~~~~~~~  318 (324)
                      +|..|.+.+...+..
T Consensus       165 l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          165 PFLWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHhCccc
Confidence            999999998765543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.81  E-value=4.4e-20  Score=154.01  Aligned_cols=172  Identities=15%  Similarity=0.146  Sum_probs=97.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+++|++..+...+.+++       . ..+...+                       ...  
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~~--   51 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------F-ENYTASF-----------------------EID--   51 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------ECS--
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-------c-eeEEEEE-----------------------EEC--
Confidence            355789999999999999999999886653221111       0 0000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~  223 (324)
                                      .....+.||||||++++..  ....      .-..+|++++|+|......  .. ..|...+  
T Consensus        52 ----------------~~~~~~~i~Dt~G~~~~~~--~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i--  105 (184)
T 1m7b_A           52 ----------------TQRIELSLWDTSGSPYYDN--VRPL------SYPDSDAVLICFDISRPETLDSVLKKWKGEI--  105 (184)
T ss_dssp             ----------------SCEEEEEEEEECCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred             ----------------CEEEEEEEEECCCChhhhh--hHHh------hcCCCcEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence                            1245788999999877521  1100      1134689999999865321  11 2232212  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc--CccchhhHHHHHHHhHHHHhccCceeeeccc-cCCC
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAG  300 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~-~g~g  300 (324)
                       ... ..+.|+++|+||+|+........   .+.   ....+  .......++        ......+++++||+ +|.|
T Consensus       106 -~~~-~~~~piilv~nK~Dl~~~~~~~~---~~~---~~~~~~v~~~~~~~~~--------~~~~~~~~~e~Sa~~~~~g  169 (184)
T 1m7b_A          106 -QEF-CPNTKMLLVGCKSDLRTDVSTLV---ELS---NHRQTPVSYDQGANMA--------KQIGAATYIECSALQSENS  169 (184)
T ss_dssp             -HHH-CTTCEEEEEEECGGGGGCHHHHH---HHH---TTTCCCCCHHHHHHHH--------HHHTCSEEEECBTTTBHHH
T ss_pred             -HHH-CCCCCEEEEEEcchhhcchhhHh---hhh---hcccCCCCHHHHHHHH--------HHcCCcEEEEeeecCCCcC
Confidence             211 24799999999999975421100   000   00000  000011111        11234689999999 6899


Q ss_pred             hHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQ  313 (324)
Q Consensus       301 v~~l~~~i~~~~~  313 (324)
                      |+++|+.|.+.+.
T Consensus       170 i~~l~~~i~~~~l  182 (184)
T 1m7b_A          170 VRDIFHVATLACV  182 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=3.7e-20  Score=151.78  Aligned_cols=160  Identities=14%  Similarity=0.147  Sum_probs=94.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+++|++..+.....+       +.   ....    +..                 +...    
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-------t~---~~~~----~~~-----------------~~~~----   47 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-------TV---EDTY----RQV-----------------ISCD----   47 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-------CS---CEEE----EEE-----------------EEET----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-------Cc---cccE----EEE-----------------EEEC----
Confidence            47899999999999999999998765432111       00   0000    000                 0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.||||||+.++..      .....+.  .+|++++|+|.....  .....|...+   ..
T Consensus        48 --------------~~~~~~~~~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i---~~  102 (172)
T 2erx_A           48 --------------KSICTLQITDTTGSHQFPA------MQRLSIS--KGHAFILVYSITSRQSLEELKPIYEQI---CE  102 (172)
T ss_dssp             --------------TEEEEEEEEECCSCSSCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHH---HH
T ss_pred             --------------CEEEEEEEEECCCchhhHH------HHHHhcc--cCCEEEEEEECcCHHHHHHHHHHHHHH---HH
Confidence                          1234688999999877521      1111222  258999999986532  1122222111   22


Q ss_pred             Hh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..  ..++|+++|+||+|+.+......  .....+..                     .  .+.+++++||++|.|++++
T Consensus       103 ~~~~~~~~pii~v~nK~Dl~~~~~v~~--~~~~~~~~---------------------~--~~~~~~~~Sa~~~~gi~~l  157 (172)
T 2erx_A          103 IKGDVESIPIMLVGNKCDESPSREVQS--SEAEALAR---------------------T--WKCAFMETSAKLNHNVKEL  157 (172)
T ss_dssp             HHC---CCCEEEEEECGGGGGGCCSCH--HHHHHHHH---------------------H--HTCEEEECBTTTTBSHHHH
T ss_pred             HhCCCCCCCEEEEEEccccccccccCH--HHHHHHHH---------------------H--hCCeEEEecCCCCcCHHHH
Confidence            21  14799999999999975432110  01111110                     1  1468999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      ++.|.+.+.
T Consensus       158 ~~~l~~~~~  166 (172)
T 2erx_A          158 FQELLNLEK  166 (172)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHHh
Confidence            999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.80  E-value=2.8e-19  Score=169.40  Aligned_cols=171  Identities=20%  Similarity=0.263  Sum_probs=103.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+|+|++..+..            +...++++    ++..              .+.+.    
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------v~~~~gtT----~d~~--------------~~~i~----  224 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTT----RDPV--------------DDEVF----  224 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC----------C--------------CEEEE----
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccc------------cCCCCCCc----CCce--------------EEEEE----
Confidence            46899999999999999999999875431            23333332    1100              01111    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh----hh--HHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----AS--GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~--~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                     ..+..+.+|||||+.++....    ..  .......+  ..+|++++++|+..+....+.+    
T Consensus       225 ---------------~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i--~~ad~vllv~d~~~~~~~~~~~----  283 (439)
T 1mky_A          225 ---------------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQDQR----  283 (439)
T ss_dssp             ---------------ETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHHHH----
T ss_pred             ---------------ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH--hhCCEEEEEEeCCCCCCHHHHH----
Confidence                           124478899999986531100    00  00011122  2368999999998876554421    


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHh--HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEF--ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                       ....+...++|+++|+||+|+.....  ..++.+.+.   .              .+     .+..+.+++++||++|.
T Consensus       284 -i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~---~--------------~~-----~~~~~~~~~~~SA~~g~  340 (439)
T 1mky_A          284 -MAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFR---E--------------KL-----YFIDYSPLIFTSADKGW  340 (439)
T ss_dssp             -HHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHH---H--------------HC-----GGGTTSCEEECBTTTTB
T ss_pred             -HHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHH---H--------------Hh-----ccCCCCcEEEEECCCCC
Confidence             22345567899999999999986542  111111111   1              00     12346799999999999


Q ss_pred             ChHHHHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQEFM  316 (324)
Q Consensus       300 gv~~l~~~i~~~~~~~~  316 (324)
                      |+++||+.|.+.+....
T Consensus       341 gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          341 NIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhc
Confidence            99999999998876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.80  E-value=8e-20  Score=155.53  Aligned_cols=173  Identities=14%  Similarity=0.141  Sum_probs=97.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+++|++..+...+.+++       . ..+...+                       ...  
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~-------~-~~~~~~~-----------------------~~~--   72 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-------F-ENYTASF-----------------------EID--   72 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-------E-EEEEEEE-----------------------ESS--
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc-------c-eeEEEEE-----------------------EEC--
Confidence            356889999999999999999999987654322111       0 0000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--ch-hHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PM-TFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~-~~~~~~~~~  223 (324)
                                      .....+.||||||+.++..  ....      .-..+|++++|+|......  .. ..|...+  
T Consensus        73 ----------------~~~~~l~i~Dt~G~~~~~~--~~~~------~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i--  126 (205)
T 1gwn_A           73 ----------------TQRIELSLWDTSGSPYYDN--VRPL------SYPDSDAVLICFDISRPETLDSVLKKWKGEI--  126 (205)
T ss_dssp             ----------------SSEEEEEEEEECCSGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH--
T ss_pred             ----------------CEEEEEEEEeCCCcHhhhH--HHHh------hccCCCEEEEEEECCCHHHHHHHHHHHHHHH--
Confidence                            1245789999999877521  1100      1134689999999865321  11 2232222  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhH-HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccc-cCCCh
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFA-LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSV-SGAGI  301 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~-~g~gv  301 (324)
                       ... ..+.|+++|+||+|+...... .++....         ..    .+..+.+..+.......++++|||+ +|.||
T Consensus       127 -~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~---------~~----~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv  191 (205)
T 1gwn_A          127 -QEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHR---------QT----PVSYDQGANMAKQIGAATYIECSALQSENSV  191 (205)
T ss_dssp             -HHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTT---------CC----CCCHHHHHHHHHHHTCSEEEECCTTTCHHHH
T ss_pred             -HHH-CCCCCEEEEEechhhccchhhhhhhcccc---------cC----CCCHHHHHHHHHHcCCCEEEEeeeccCCcCH
Confidence             211 247999999999999753211 1000000         00    0000000000011223689999999 68999


Q ss_pred             HHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQ  313 (324)
Q Consensus       302 ~~l~~~i~~~~~  313 (324)
                      +++|..|.+.+.
T Consensus       192 ~~lf~~l~~~~l  203 (205)
T 1gwn_A          192 RDIFHVATLACV  203 (205)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.80  E-value=1.1e-19  Score=154.04  Aligned_cols=167  Identities=16%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc--ccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      ...++|+|+|++|||||||+++|++.  .+...+.+++              ..+...                ..+...
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~--------------~~~~~~----------------~~~~~~   67 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS--------------GVEVVV----------------APVTIP   67 (208)
T ss_dssp             EEEEEEEEC------------------------------------------------C----------------EEEECT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc--------------ceEEEE----------------EEEEEC
Confidence            34578999999999999999999987  4432221111              000000                000000


Q ss_pred             ccccChHHHHHHHHHHHHhC--CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          145 LNLFTTKFDEVISLIERRAD--HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                                        ..  ...+.||||||++++..      ....  .-..+|++++|+|....... .....++.
T Consensus        68 ------------------~~~~~~~~~l~Dt~G~~~~~~------~~~~--~~~~~d~~i~v~d~~~~~s~-~~~~~~~~  120 (208)
T 2yc2_C           68 ------------------DTTVSVELFLLDTAGSDLYKE------QISQ--YWNGVYYAILVFDVSSMESF-ESCKAWFE  120 (208)
T ss_dssp             ------------------TSSEEEEEEEEETTTTHHHHH------HHST--TCCCCCEEEEEEETTCHHHH-HHHHHHHH
T ss_pred             ------------------CcccEEEEEEEECCCcHHHHH------HHHH--HHhhCcEEEEEEECCCHHHH-HHHHHHHH
Confidence                              11  34689999999866411      0000  11346999999998654211 11111222


Q ss_pred             HHHHHhh---cCCCeEEEeeccccCC-hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc-
Q 020549          223 ACSILYK---TRLPLVLAFNKTDVAQ-HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-  297 (324)
Q Consensus       223 ~~~~~~~---~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~-  297 (324)
                      .+.....   .++|+++|+||+|+.. .....  .+....+.+                     .  .+.+++++||++ 
T Consensus       121 ~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~--~~~~~~~~~---------------------~--~~~~~~~~Sa~~~  175 (208)
T 2yc2_C          121 LLKSARPDRERPLRAVLVANKTDLPPQRHQVR--LDMAQDWAT---------------------T--NTLDFFDVSANPP  175 (208)
T ss_dssp             HHHHHCSCTTSCCEEEEEEECC-------CCC--HHHHHHHHH---------------------H--TTCEEEECCC---
T ss_pred             HHHHhhcccccCCcEEEEEECcccchhhccCC--HHHHHHHHH---------------------H--cCCEEEEeccCCC
Confidence            2222222   5799999999999976 32110  011111111                     1  136899999999 


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 020549          298 GAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       298 g~gv~~l~~~i~~~~~~~  315 (324)
                      |.|++++|+.|.+.+.+.
T Consensus       176 ~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          176 GKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             ----CHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999987653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=4e-19  Score=159.58  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=72.4

Q ss_pred             CCCEEEEeCCCCcchhh----hh---hhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549          165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~----~~---~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  237 (324)
                      ..++.||||||+.+...    ..   .....+..++. ...+++++|+|+...+...+.    ...+..+...+.|+++|
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~----~~~~~~~~~~~~~~i~V  198 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDA----LKIAKEVDPQGQRTIGV  198 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSSCGGGCHH----HHHHHHHCTTCSSEEEE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc-CCCeEEEEEecCCcchhhhHH----HHHHHHhCCCCCeEEEE
Confidence            36899999999864210    00   12222333332 223466689999876554431    11224445568999999


Q ss_pred             eeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          238 FNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       238 ~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      +||+|+.+... ..+..+.      .+              ..   ....+.+++++||++|.|++++++.|.+..+
T Consensus       199 ~NK~Dl~~~~~~~~~~~~~------~~--------------~~---~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          199 ITKLDLMDEGTDARDVLEN------KL--------------LP---LRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             EECGGGSCTTCCCHHHHTT------CS--------------SC---CTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             EEccccCCCCchHHHHHhC------Cc--------------Cc---CCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            99999986542 1111110      00              00   0012457999999999999999999987443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.68  E-value=3.4e-21  Score=163.46  Aligned_cols=173  Identities=13%  Similarity=0.147  Sum_probs=96.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+++|.+|||||||+++|++..+...+..++.      .  .+      ...                       
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~------~--~~------~~~-----------------------   70 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF------D--NY------SAN-----------------------   70 (204)
Confidence            4668899999999999999999997765432221110      0  00      000                       


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~  223 (324)
                                  +........+.||||||+.++..      .....+  ..+|++++|+|....  +.... .|...+  
T Consensus        71 ------------~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~~l--  128 (204)
T 3th5_A           71 ------------VMVDGKPVNLGLWDTAGQEDYDR------LRPLSY--PQTDVFLICFSLVSPASFENVRAKWYPEV--  128 (204)
Confidence                        00002245677999999877521      111111  235888888887654  33222 332222  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                       ... ..++|+++|+||+|+.......+.......  ...  .......+++        .....+++++||++|.|+++
T Consensus       129 -~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~v--~~~~~~~~~~--------~~~~~~~~~vSA~~g~gi~~  194 (204)
T 3th5_A          129 -RHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKL--TPI--TYPQGLAMAK--------EIGAVKYLECSALTQRGLKT  194 (204)
Confidence             111 127899999999999865322111111000  000  0000111111        11223789999999999999


Q ss_pred             HHHHHHHHH
Q 020549          304 YFKAVEESA  312 (324)
Q Consensus       304 l~~~i~~~~  312 (324)
                      +|+.|.+.+
T Consensus       195 l~~~l~~~i  203 (204)
T 3th5_A          195 VFDEAIRAV  203 (204)
Confidence            999998754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.80  E-value=1e-19  Score=166.32  Aligned_cols=170  Identities=20%  Similarity=0.273  Sum_probs=103.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..|+|+|.+|||||||+|+|++..+.             +..+++++                  +.++.+.+.-     
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~-------------i~~~~ftT------------------l~p~~g~v~~-----  202 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPK-------------IADYHFTT------------------LVPNLGMVET-----  202 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCE-------------ESSTTSSC------------------CCCCEEEEEC-----
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCc-------------cccCCccc------------------cCceEEEEEe-----
Confidence            46999999999999999999876432             23334333                  1111121110     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh-hhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                   .....+.||||||+.+... +..+...+.+.+.  .++++++|+|++..  ......+..++..+..
T Consensus       203 -------------~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~--~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~  267 (342)
T 1lnz_A          203 -------------DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--RTRVIVHVIDMSGLEGRDPYDDYLTINQELSE  267 (342)
T ss_dssp             -------------SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH
T ss_pred             -------------CCCceEEEecCCCCcccccccchhHHHHHHHHH--hccEEEEEEECCcccccChHHHHHHHHHHHHH
Confidence                         1135799999999765311 1223333333332  36899999998652  2222222222222222


Q ss_pred             Hh--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          227 LY--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      +.  ..++|+++|+||+|+.....   ..+.+.   +                     .+....+++++||+++.|+++|
T Consensus       268 ~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~---~---------------------~l~~~~~v~~iSA~tg~gi~eL  320 (342)
T 1lnz_A          268 YNLRLTERPQIIVANKMDMPEAAE---NLEAFK---E---------------------KLTDDYPVFPISAVTREGLREL  320 (342)
T ss_dssp             SCSSTTTSCBCBEEECTTSTTHHH---HHHHHH---H---------------------HCCSCCCBCCCSSCCSSTTHHH
T ss_pred             hhhhhcCCCEEEEEECccCCCCHH---HHHHHH---H---------------------HhhcCCCEEEEECCCCcCHHHH
Confidence            22  14799999999999986532   111111   1                     1111267999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFME  317 (324)
Q Consensus       305 ~~~i~~~~~~~~~  317 (324)
                      +..|.+.+.+.++
T Consensus       321 ~~~l~~~l~~~~~  333 (342)
T 1lnz_A          321 LFEVANQLENTPE  333 (342)
T ss_dssp             HHHHHHHHTSCCC
T ss_pred             HHHHHHHHhhCcc
Confidence            9999999876554

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=165.41  Aligned_cols=165  Identities=18%  Similarity=0.187  Sum_probs=94.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+.++|+|+|.+|||||||+++|++..+.... +       ++.       +...                   .+.   
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-p-------T~~-------~~~~-------------------~~~---  205 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-P-------TIG-------FNVE-------------------TVE---  205 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-E-------ETT-------EEEE-------------------EEE---
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-c-------ccc-------eEEE-------------------EEe---
Confidence            45679999999999999999999887653211 0       010       0000                   000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++..  .    ....+  ..+|++|+|+|+.....-......+...+..
T Consensus       206 ----------------~~~~~l~i~Dt~G~~~~~~--~----~~~~~--~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~  261 (329)
T 3o47_A          206 ----------------YKNISFTVWDVGGQDKIRP--L----WRHYF--QNTQGLIFVVDSNDRERVNEAREELMRMLAE  261 (329)
T ss_dssp             ----------------ETTEEEEEEECC-----CC--S----HHHHH--TTEEEEEEEEETTCSSSHHHHHHHHHHHHTC
T ss_pred             ----------------cCcEEEEEEECCCCHhHHH--H----HHHHh--ccCCEEEEEEECCchHHHHHHHHHHHHHHhh
Confidence                            2256789999999877621  1    11122  2368999999986533221111111111111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+|+|+||+|+.......++...+.                     ... ......+++++||++|.||+++|+
T Consensus       262 ~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~---------------------~~~-~~~~~~~~~~vSAk~g~gi~el~~  319 (329)
T 3o47_A          262 DELRDAVLLVFANKQDLPNAMNAAEITDKLG---------------------LHS-LRHRNWYIQATCATSGDGLYEGLD  319 (329)
T ss_dssp             GGGTTCEEEEEEECTTSTTCCCHHHHHHHHT---------------------CTT-CCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             hccCCCeEEEEEECccCCcccCHHHHHHHhc---------------------hhh-hhcCCCEEEEEECCCCcCHHHHHH
Confidence            2224799999999999986543222221111                     000 001235799999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.+.+
T Consensus       320 ~l~~~l~~  327 (329)
T 3o47_A          320 WLSNQLRN  327 (329)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99987753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.80  E-value=7.7e-20  Score=173.46  Aligned_cols=161  Identities=19%  Similarity=0.266  Sum_probs=97.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +.+++|+|+|++|||||||+|+|++..+..            +..+++++    ++....             .+.    
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------v~~~~gtT----~d~~~~-------------~i~----  268 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAI------------VTDLPGTT----RDVVES-------------QLV----  268 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSC------------CSCCTTCC----HHHHHH-------------EEE----
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCccc------------ccCCCCee----EEEEEE-------------EEE----
Confidence            356889999999999999999999976542            34444443    222110             000    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHH-HHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                      ..+..+.||||||+.++.  ...... +.+.... ..+|++++|+|+..++.....  .++   
T Consensus       269 ----------------~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~--~i~---  325 (462)
T 3geh_A          269 ----------------VGGIPVQVLDTAGIRETS--DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQ--EIY---  325 (462)
T ss_dssp             ----------------ETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHHH--HHH---
T ss_pred             ----------------ECCEEEEEEECCccccch--hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHH--HHH---
Confidence                            225678999999987641  111111 1122211 347999999999887654431  111   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ..+  ...|+++|+||+|+.......    ...                         .+....+++++||++|.|+++|
T Consensus       326 ~~l--~~~piivV~NK~Dl~~~~~~~----~~~-------------------------~~~~~~~~i~iSAktg~Gi~eL  374 (462)
T 3geh_A          326 EQV--KHRPLILVMNKIDLVEKQLIT----SLE-------------------------YPENITQIVHTAAAQKQGIDSL  374 (462)
T ss_dssp             HHH--TTSCEEEEEECTTSSCGGGST----TCC-------------------------CCTTCCCEEEEBTTTTBSHHHH
T ss_pred             Hhc--cCCcEEEEEECCCCCcchhhH----HHH-------------------------HhccCCcEEEEECCCCCCHHHH
Confidence            222  237999999999998764321    111                         1223468999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          305 FKAVEESAQE  314 (324)
Q Consensus       305 ~~~i~~~~~~  314 (324)
                      ++.|.+.+..
T Consensus       375 ~~~i~~~~~~  384 (462)
T 3geh_A          375 ETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.79  E-value=1.5e-20  Score=180.71  Aligned_cols=165  Identities=19%  Similarity=0.278  Sum_probs=103.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++++|+++|++|+|||||+++|.+..+.....             ++.+ .++..                 ..+.    
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~-------------~giT-~~i~~-----------------~~v~----   47 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA-------------GGIT-QHIGA-----------------FLVS----   47 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSS-------------CCBC-CCTTS-----------------CCBC----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-------------Ccee-EEEeE-----------------EEEE----
Confidence            56789999999999999999999876543211             1111 00000                 0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      +              ..+..+.||||||+++|......+        ...+|++++|+|+.++..+++     ...+..+
T Consensus        48 ~--------------~~g~~i~~iDTPGhe~f~~~~~~~--------~~~aD~vILVVDa~dg~~~qt-----~e~l~~~  100 (537)
T 3izy_P           48 L--------------PSGEKITFLDTPGHAAFSAMRARG--------TQVTDIVILVVAADDGVMKQT-----VESIQHA  100 (537)
T ss_dssp             S--------------SCSSCCBCEECSSSCCTTTSBBSS--------SBSBSSCEEECBSSSCCCHHH-----HHHHHHH
T ss_pred             e--------------CCCCEEEEEECCChHHHHHHHHHH--------HccCCEEEEEEECCCCccHHH-----HHHHHHH
Confidence            0              124578899999988763211111        134699999999998876654     2233556


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+|+|+||+|+...... .....+..                  .+...+.+....+++++||++|.|+++|++.
T Consensus       101 ~~~~vPiIVViNKiDl~~~~~~-~v~~~l~~------------------~~~~~e~~~~~~~iv~vSAktG~GI~eLle~  161 (537)
T 3izy_P          101 KDAHVPIVLAINKCDKAEADPE-KVKKELLA------------------YDVVCEDYGGDVQAVHVSALTGENMMALAEA  161 (537)
T ss_dssp             HTTTCCEEECCBSGGGTTTSCC-SSSSHHHH------------------TTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred             HHcCCcEEEEEecccccccchH-HHHHHHHh------------------hhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence            6678999999999999753210 00011110                  0000002223468999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |...+.
T Consensus       162 I~~l~~  167 (537)
T 3izy_P          162 TIALAE  167 (537)
T ss_dssp             HHHHHT
T ss_pred             HHHhhh
Confidence            998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.79  E-value=5.1e-18  Score=156.50  Aligned_cols=169  Identities=20%  Similarity=0.350  Sum_probs=101.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|++|||||||+|+|++..+.             +...++++. +..                 -+...   
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------~~~~~~~t~-~~~-----------------~~~~~---  210 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------IASYPFTTR-GIN-----------------VGQFE---  210 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------EECCTTCSS-CEE-----------------EEEEE---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------cCCCCCeee-cee-----------------EEEEE---
Confidence            45678999999999999999999987532             111122210 000                 00000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH--hccCCcEEEEEEcCCCCC--CchhHHHhHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSA--NPMTFMSNMLY  222 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~  222 (324)
                                      ..+..+.+|||||+.++..+...... .+.+  ....+|.+++|+|+....  .... ....+.
T Consensus       211 ----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~ad~illV~D~s~~~~~~~~~-~~~~~~  272 (357)
T 2e87_A          211 ----------------DGYFRYQIIDTPGLLDRPISERNEIE-KQAILALRYLGNLIIYIFDPSEHCGFPLEE-QIHLFE  272 (357)
T ss_dssp             ----------------ETTEEEEEEECTTTSSSCSTTSCHHH-HHHHHGGGGTCSEEEEEECTTCTTSSCHHH-HHHHHH
T ss_pred             ----------------ecCceEEEEeCCCccccchhhhhHHH-HHHHHHHHhcCCEEEEEEeCCccccCCHHH-HHHHHH
Confidence                            12456899999998764222111111 1111  123479999999976543  2221 111122


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      .+.... .++|+++|+||+|+.......+.    ..+.                      . ....+++++||++|+|++
T Consensus       273 ~i~~~~-~~~piilV~NK~Dl~~~~~~~~~----~~~~----------------------~-~~~~~~~~iSA~~g~gi~  324 (357)
T 2e87_A          273 EVHGEF-KDLPFLVVINKIDVADEENIKRL----EKFV----------------------K-EKGLNPIKISALKGTGID  324 (357)
T ss_dssp             HHHHHT-TTSCEEEEECCTTTCCHHHHHHH----HHHH----------------------H-HTTCCCEECBTTTTBTHH
T ss_pred             HHHHhc-CCCCEEEEEECcccCChHHHHHH----HHHH----------------------H-hcCCCeEEEeCCCCcCHH
Confidence            112211 27999999999999876533211    1110                      0 124689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      +|++.|.+.+...
T Consensus       325 ~l~~~i~~~l~~~  337 (357)
T 2e87_A          325 LVKEEIIKTLRPL  337 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.79  E-value=6.4e-20  Score=154.44  Aligned_cols=117  Identities=11%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH-hhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl  243 (324)
                      ...+++|||+|+...+.  ...   ..+++.+.++++||+++...++.....|...+   ... ...++|+++|+||+|+
T Consensus        55 ~~~l~~~Dt~~~~~~~~--~~~---~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l---~~~~~~~~~piilV~NK~Dl  126 (192)
T 2cjw_A           55 SATIILLDMWENKGENE--WLH---DHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGNKSDL  126 (192)
T ss_dssp             EEEEEEECCCCC----C--TTG---GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHH---HHHTTTSCCCEEEEEECTTC
T ss_pred             EEEEEEEEeccCcchhh--hHH---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHH---HHhhCCCCCeEEEEEechhh
Confidence            34678999999865311  011   11122233445555555544554444443222   222 2347999999999998


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      .......  ......+.                      . ....++++|||++|.||+++|..|.+.+..
T Consensus       127 ~~~r~v~--~~~~~~~a----------------------~-~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          127 VRXREVS--VSEGRAXA----------------------V-VFDXKFIETSAAVQHNVKELFEGIVRQVRL  172 (192)
T ss_dssp             GGGCCSC--HHHHHHHH----------------------H-HTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hcccccc--HHHHHHHH----------------------H-HhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence            6532110  00000000                      1 123689999999999999999999988753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.79  E-value=6.6e-19  Score=166.60  Aligned_cols=112  Identities=13%  Similarity=0.182  Sum_probs=69.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-----hhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-----MTFMSNMLYACSILYKTRLP-LVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-----~~~~~~~~~~~~~~~~~~~p-~ilv~  238 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|||+..+...     ...+   ...+..+...++| +|+|+
T Consensus        94 ~~~~~iiDTPGh~~f~~------~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt---~e~l~~~~~~~v~~iIvvi  162 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVP------NMIGGA--SQADLAVLVISARKGEFETGFEKGGQT---REHAMLAKTAGVKHLIVLI  162 (439)
T ss_pred             CeEEEEEECCChHHHHH------HHHhhH--hhCCEEEEEEECCCCccccccCCCchH---HHHHHHHHHcCCCeEEEEe
Confidence            56899999999877621      222222  347999999999987642     1122   2222445557788 89999


Q ss_pred             eccccCChH----hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHHHH
Q 020549          239 NKTDVAQHE----FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       239 NK~Dl~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ||+|+...+    ...+..+++..+.+.              +     .+.  ...+++++||++|.|++++.+
T Consensus       163 NK~Dl~~~~~~~~~~~~i~~~~~~~l~~--------------~-----g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          163 NKMDDPTVNWSNERYEECKEKLVPFLKK--------------V-----GFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ecCCCcccchHHHHHHHHHHHHHHHHHH--------------h-----cccccCCeeEEEeeccCCcccccccc
Confidence            999997532    122222222222211              1     111  146899999999999999655

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.79  E-value=2.7e-19  Score=170.45  Aligned_cols=159  Identities=20%  Similarity=0.327  Sum_probs=101.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+.+|+|+|+||||||||+|+|++..+..            +..+++++    ++..              .+.+.    
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~------------vs~~~gTT----~d~~--------------~~~i~----  287 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI------------VTDIPGTT----RDVI--------------SEEIV----  287 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCC------------CCCSSCCS----SCSC--------------CEEEE----
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCc------------cCCCCCee----eeeE--------------EEEEe----
Confidence            46889999999999999999999986542            44455444    1110              01010    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCc-chhhhh-hhH-HHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWS-ASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~-~~~-~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                                     ..+..+.||||||+. ++.... ..+ ......+  ..+|++++|+|+.......+.  ..+   
T Consensus       288 ---------------~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~~--~il---  345 (482)
T 1xzp_A          288 ---------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEEDR--KIL---  345 (482)
T ss_dssp             ---------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHHH--HHH---
T ss_pred             ---------------cCCeEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHHH--HHH---
Confidence                           124578999999997 542100 011 1111222  236999999999776543321  111   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc-cCceeeeccccCCChHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK-NLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~iv~vSA~~g~gv~~  303 (324)
                      ..+  .++|+++|+||+|+......    +.+.                         .+.. ..+++++||++|.|+++
T Consensus       346 ~~l--~~~piivV~NK~DL~~~~~~----~~~~-------------------------~~~~~~~~~i~iSAktg~Gi~e  394 (482)
T 1xzp_A          346 ERI--KNKRYLVVINKVDVVEKINE----EEIK-------------------------NKLGTDRHMVKISALKGEGLEK  394 (482)
T ss_dssp             HHH--TTSSEEEEEEECSSCCCCCH----HHHH-------------------------HHHTCSTTEEEEEGGGTCCHHH
T ss_pred             HHh--cCCCEEEEEECcccccccCH----HHHH-------------------------HHhcCCCcEEEEECCCCCCHHH
Confidence            222  37899999999999753111    1111                         1111 35899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      |++.|.+.+.
T Consensus       395 L~~~l~~~~~  404 (482)
T 1xzp_A          395 LEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHTH
T ss_pred             HHHHHHHHHh
Confidence            9999998755

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.79  E-value=2.4e-19  Score=169.76  Aligned_cols=160  Identities=25%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+|+|+||||||||+|+|++..+..            +...++.+    +++.              -+...      
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~------------v~~~~g~T----~d~~--------------~~~~~------   47 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRI--------------YSSAE------   47 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC---------------------------CE--------------EEECT------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCCc----cceE--------------EEEEE------
Confidence            579999999999999999999876542            22233322    1110              00000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   ..+..+.||||||+....  ......+......  ..+|+++||+|+..+....+.+.     ...+
T Consensus        48 -------------~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~-----~~~l  107 (436)
T 2hjg_A           48 -------------WLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV-----AKIL  107 (436)
T ss_dssp             -------------TCSSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-----HHHH
T ss_pred             -------------ECCceEEEEECCCCCCcc--hhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-----HHHH
Confidence                         235689999999986321  1111122221111  34799999999998877655331     2345


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.....  .. .++.                         . ....+++++||++|.|+++|++.
T Consensus       108 ~~~~~pvilv~NK~D~~~~~~--~~-~~~~-------------------------~-lg~~~~~~iSA~~g~gv~~L~~~  158 (436)
T 2hjg_A          108 YRTKKPVVLAVNKLDNTEMRA--NI-YDFY-------------------------S-LGFGEPYPISGTHGLGLGDLLDA  158 (436)
T ss_dssp             TTCCSCEEEEEECCCC-------CC-CSSG-------------------------G-GSSCCCEECBTTTTBTHHHHHHH
T ss_pred             HHcCCCEEEEEECccCccchh--hH-HHHH-------------------------H-cCCCCeEEEeCcCCCChHHHHHH
Confidence            567899999999999875421  00 0000                         0 12237899999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+++
T Consensus       159 i~~~l~~  165 (436)
T 2hjg_A          159 VAEHFKN  165 (436)
T ss_dssp             HHHTGGG
T ss_pred             HHHhcCc
Confidence            9988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.78  E-value=2e-18  Score=159.09  Aligned_cols=199  Identities=21%  Similarity=0.225  Sum_probs=113.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcC----CCCCCccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFN----LGPNGGIL  142 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~  142 (324)
                      .+..+|+|+|++|||||||+++|+......+..+.++..|+......+. -  ..+.++.......-+    -.+.++.+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~-~--l~d~~~~~~~~~~~~~~i~~~~~~~~~  153 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGS-I--LGDKTRMARLAVHPNAYIRPSPTSGTL  153 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------CHHHHTCTTEEEECCC--CCH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccch-h--ccchhhHHhhccCCCeeEEECCCCccc
Confidence            3567899999999999999999998877777788888777654321100 0  001111000000000    00111111


Q ss_pred             ccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                      .   .++......+..+.  ..+.+++||||||+.+...      .+     ...+|++++|+|+..+.......     
T Consensus       154 ~---~~~~~t~d~i~~~~--~~~~~~iiiDTpGi~~~~~------~~-----~~~aD~vl~V~d~~~~~~~~~l~-----  212 (355)
T 3p32_A          154 G---GVTRATRETVVLLE--AAGFDVILIETVGVGQSEV------AV-----ANMVDTFVLLTLARTGDQLQGIK-----  212 (355)
T ss_dssp             H---HHHHHHHHHHHHHH--HTTCCEEEEEECSCSSHHH------HH-----HTTCSEEEEEEESSTTCTTTTCC-----
T ss_pred             c---chhHHHHHHHHHHh--hCCCCEEEEeCCCCCcHHH------HH-----HHhCCEEEEEECCCCCccHHHHH-----
Confidence            1   12233333332222  4578999999999755311      11     14579999999986543322111     


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh----c-cCceeeecccc
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY----K-NLKSVGVSSVS  297 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~----~-~~~iv~vSA~~  297 (324)
                          ....++|+++|+||+|+............+.....                     .+.    . ..+++++||++
T Consensus       213 ----~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~---------------------~~~~~~~~~~~~vi~iSA~~  267 (355)
T 3p32_A          213 ----KGVLELADIVVVNKADGEHHKEARLAARELSAAIR---------------------LIYPREALWRPPVLTMSAVE  267 (355)
T ss_dssp             ----TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH---------------------HHSTTCCSCCCCEEEEBGGG
T ss_pred             ----HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh---------------------hccccccCCCCceEEEEcCC
Confidence                01134699999999999865433323222221111                     111    1 36899999999


Q ss_pred             CCChHHHHHHHHHHHHH
Q 020549          298 GAGIEAYFKAVEESAQE  314 (324)
Q Consensus       298 g~gv~~l~~~i~~~~~~  314 (324)
                      |.|+++|++.|.+.++.
T Consensus       268 g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          268 GRGLAELWDTVERHRQV  284 (355)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998865

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.78  E-value=4.7e-18  Score=156.67  Aligned_cols=176  Identities=18%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+|+|++|||||||+|+|++..+..             ...+++| .|.                 ..+.+.       
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~-------------~~~~~~T-~d~-----------------~~~~i~-------  222 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKV-------------DTKLFTT-MSP-----------------KRYAIP-------  222 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-------------------------CCS-----------------CEEEEE-------
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccc-------------cCCcccc-cCC-----------------EEEEEE-------
Confidence            49999999999999999999875421             1112221 000                 001110       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCC-chhHHHhHHHHHHHHh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSAN-PMTFMSNMLYACSILY  228 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~-~~~~~~~~~~~~~~~~  228 (324)
                                  ..+..+.+|||||+.+..... ....+...+.. ..+|++++|+|+++... ...........+..+.
T Consensus       223 ------------~~g~~v~l~DT~G~i~~lp~~-lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~  289 (364)
T 2qtf_A          223 ------------INNRKIMLVDTVGFIRGIPPQ-IVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG  289 (364)
T ss_dssp             ------------ETTEEEEEEECCCBCSSCCGG-GHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------ECCEEEEEEeCCCchhcCCHH-HHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence                        113568899999974421111 11112222222 45799999999876431 1111111122223333


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ..++|+|+|+||+|+.+... .........+..                     .+ ....+++++||++|.|+++|++.
T Consensus       290 ~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~---------------------~l~~~~~~~~~~SA~~g~gi~~L~~~  347 (364)
T 2qtf_A          290 VSGKPILVTLNKIDKINGDL-YKKLDLVEKLSK---------------------ELYSPIFDVIPISALKRTNLELLRDK  347 (364)
T ss_dssp             CCSCCEEEEEECGGGCCSCH-HHHHHHHHHHHH---------------------HHCSCEEEEEECBTTTTBSHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCchH-HHHHHHHHHHHH---------------------HhcCCCCcEEEEECCCCcCHHHHHHH
Confidence            35789999999999986431 111111111111                     11 12346899999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 020549          308 VEESAQEFMETY  319 (324)
Q Consensus       308 i~~~~~~~~~~~  319 (324)
                      |.+.+....+.+
T Consensus       348 I~~~l~~~~~~~  359 (364)
T 2qtf_A          348 IYQLATQLSLEH  359 (364)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHhcccCCCC
Confidence            999887665544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.77  E-value=1.5e-18  Score=162.95  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeeccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD  242 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~D  242 (324)
                      ..+.||||||+++|..         ..... ..+|++++|+|+.++. ..++..  .+   ..+...+ .|+|+|+||+|
T Consensus        81 ~~i~iiDtPGh~~f~~---------~~~~~~~~~D~~ilVvda~~g~~~~qt~e--~l---~~~~~l~~~~iivv~NK~D  146 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMA---------TMLSGASLMDGAILVIAANEPCPQPQTKE--HL---MALEILGIDKIIIVQNKID  146 (408)
T ss_dssp             EEEEEEECSSHHHHHH---------HHHTTCSCCSEEEEEEETTSCSSCHHHHH--HH---HHHHHTTCCCEEEEEECTT
T ss_pred             cEEEEEECCCHHHHHH---------HHHHhHhhCCEEEEEEECCCCCCCchhHH--HH---HHHHHcCCCeEEEEEEccC
Confidence            4789999999766511         11222 4579999999999876 444421  12   2223334 47999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      +.+.+......+++..+.+.                    .+....+++++||++|.|+++|++.|.+.++
T Consensus       147 l~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          147 LVDEKQAEENYEQIKEFVKG--------------------TIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             SSCTTTTTTHHHHHHHHHTT--------------------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHhh--------------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            98765322222222211110                    0123578999999999999999999998765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.77  E-value=3.6e-18  Score=157.92  Aligned_cols=116  Identities=11%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCe-EEEee-ccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFN-KTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~N-K~D  242 (324)
                      +..+.||||||+++|..      .+...+  ..+|++++|+| ..++.++..     ..+..+...++|. |+|+| |+|
T Consensus        59 ~~~i~iiDtPGh~~f~~------~~~~~~--~~aD~ailVvd-~~g~~~qt~-----e~~~~~~~~~i~~~ivvvNNK~D  124 (370)
T 2elf_A           59 GRNMVFVDAHSYPKTLK------SLITAL--NISDIAVLCIP-PQGLDAHTG-----ECIIALDLLGFKHGIIALTRSDS  124 (370)
T ss_dssp             SSEEEEEECTTTTTCHH------HHHHHH--HTCSEEEEEEC-TTCCCHHHH-----HHHHHHHHTTCCEEEEEECCGGG
T ss_pred             CeEEEEEECCChHHHHH------HHHHHH--HHCCEEEEEEc-CCCCcHHHH-----HHHHHHHHcCCCeEEEEEEeccC
Confidence            55799999999988621      222222  44799999999 777765542     1123344567898 99999 999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceee--ecccc---CCChHHHHHHHHHHHHHH
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVG--VSSVS---GAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~--vSA~~---g~gv~~l~~~i~~~~~~~  315 (324)
                      + +.+......+++..+.+..                    .....++++  +||++   |.|+++|++.|.+.++..
T Consensus       125 l-~~~~~~~~~~~i~~~l~~~--------------------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          125 T-HMHAIDELKAKLKVITSGT--------------------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             S-CHHHHHHHHHHHHHHTTTS--------------------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHHhc--------------------CCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence            9 6543332222332211100                    013468999  99999   999999999999988653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.77  E-value=1.9e-18  Score=162.32  Aligned_cols=115  Identities=22%  Similarity=0.308  Sum_probs=75.0

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcC-CCeEEEeecccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV  243 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl  243 (324)
                      ..+.||||||+.+|..      .+...  ...+|++++|+|+.++. ..++..  .+.   .+...+ .|+|+|+||+|+
T Consensus        83 ~~i~iiDtPGh~~f~~------~~~~~--~~~~D~~ilVvda~~g~~~~qt~e--~l~---~~~~~~~~~iivviNK~Dl  149 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMT------TMLAG--ASLMDGAILVIAANEPCPRPQTRE--HLM---ALQIIGQKNIIIAQNKIEL  149 (410)
T ss_dssp             EEEEEEECSSHHHHHH------HHHHC--GGGCSEEEEEEETTSCSSCHHHHH--HHH---HHHHHTCCCEEEEEECGGG
T ss_pred             cEEEEEECCChHHHHH------HHHhh--hhhCCEEEEEEECCCCCCChhHHH--HHH---HHHHcCCCcEEEEEECccC
Confidence            4689999999866521      11111  13579999999999886 444421  121   222234 478999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      .+.+......+++..+.+.                    ......+++++||++|.|+++|++.|.+.++
T Consensus       150 ~~~~~~~~~~~~i~~~l~~--------------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          150 VDKEKALENYRQIKEFIEG--------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHh--------------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            9865433333333221110                    0123578999999999999999999998765

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.77  E-value=3.3e-18  Score=166.81  Aligned_cols=127  Identities=24%  Similarity=0.336  Sum_probs=78.1

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+.||||||+.+|......+        ...+|++|+|+|+.+++.++++.     .+..+...++|+|+|+||+|+..
T Consensus        70 ~~i~liDTPGhe~F~~~~~r~--------~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRKRG--------GALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH  136 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBCSS--------SBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred             CCEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence            468999999998873211110        13479999999999998776532     22445567899999999999975


Q ss_pred             hHh--------------HHHHHHhHHHHHHHHhcCccchhhHHHHHHHh---------HHHHhccCceeeeccccCCChH
Q 020549          246 HEF--------------ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLA---------LDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       246 ~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                      ...              .....+.+.....          .+.+.+...         +..+....+++++||++|.|++
T Consensus       137 ~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~----------ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~  206 (594)
T 1g7s_A          137 GWRVHEGRPFMETFSKQDIQVQQKLDTKVY----------ELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIP  206 (594)
T ss_dssp             TCCCCTTCCHHHHHTTSCHHHHHHHHHHHH----------HHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHH
T ss_pred             ccccccCCchHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCch
Confidence            210              0011111111100          000111000         0001123589999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQEF  315 (324)
Q Consensus       303 ~l~~~i~~~~~~~  315 (324)
                      +|++.|...++..
T Consensus       207 eLl~~I~~~~~~~  219 (594)
T 1g7s_A          207 ELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHhhcccc
Confidence            9999999988743

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.77  E-value=4.3e-18  Score=163.03  Aligned_cols=112  Identities=19%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh--HHHhHHHHHHHHhhcC-CCeEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTR-LPLVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~~~~~~~-~p~ilv~NK~  241 (324)
                      ...+.||||||+++|.      ..+...+  ..+|++|+|+|+..+.....  .+......+..+...+ .|+|+|+||+
T Consensus       110 ~~~~~iiDTPG~~~f~------~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~  181 (483)
T 3p26_A          110 RANFTIVDAPGHRDFV------PNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM  181 (483)
T ss_dssp             SCEEEEECCCCCGGGH------HHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred             CceEEEEECCCcHHHH------HHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence            5789999999997762      1222222  34799999999988632110  0011122223344455 4599999999


Q ss_pred             ccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549          242 DVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       242 Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~  303 (324)
                      |+.+.  ....+..+.+..+.+.+                   .+ ....+++++||++|.|+++
T Consensus       182 Dl~~~~~~~~~~i~~~~~~~l~~~-------------------g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          182 DNVDWSQQRFEEIKSKLLPYLVDI-------------------GFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGEEEEECCSSSCTTSSS
T ss_pred             CcccchHHHHHHHHHHHHHHHHHc-------------------CCCcccceEEEEeeecCCCccc
Confidence            99873  22222222332221111                   11 1247899999999999985

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.77  E-value=6.3e-19  Score=160.30  Aligned_cols=174  Identities=16%  Similarity=0.152  Sum_probs=98.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|.+|+|||||+++|++..+...+..+       + ...+...+                       ...  
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t-------~-~~~~~~~~-----------------------~~~--  199 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------V-FDNYSANV-----------------------MVD--  199 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC-------S-EEEEEEEE-----------------------EET--
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc-------c-cceeEEEE-----------------------EEC--
Confidence            45688999999999999999999987654322111       0 00000000                       000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh---HHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT---FMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~---~~~~~~~~  223 (324)
                                      .....+.||||||+.++..  ....      .-..+|++++|+|.........   .|..   .
T Consensus       200 ----------------~~~~~~~l~Dt~G~~~~~~--~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~  252 (332)
T 2wkq_A          200 ----------------GKPVNLGLWDTAGLEDYDR--LRPL------SYPQTDVFLICFSLVSPASFHHVRAKWYP---E  252 (332)
T ss_dssp             ----------------TEEEEEEEEEECCCGGGTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHH---H
T ss_pred             ----------------CEEEEEEEEeCCCchhhhH--HHHH------hccCCCEEEEEEeCCCHHHHHHHHHHHHH---H
Confidence                            1234667999999877621  1100      1134699999999865332111   2222   1


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      +... ..++|+++|+||+|+.......+......       .     ..+.......+.......++++|||++|.|+++
T Consensus       253 ~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  319 (332)
T 2wkq_A          253 VRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKK-------L-----TPITYPQGLAMAKEIGAVKYLECSALTQRGLKT  319 (332)
T ss_dssp             HHHH-CTTSCEEEEEECHHHHTCHHHHHHHHHTT-------C-----CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHH
T ss_pred             HHhh-CCCCcEEEEEEchhcccccchhhhccccc-------c-----ccccHHHHHHHHHHcCCcEEEEecCCCCcCHHH
Confidence            1221 13799999999999976532211111000       0     000000000001112234899999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      +|+.|.+.+.
T Consensus       320 l~~~l~~~~~  329 (332)
T 2wkq_A          320 VFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.77  E-value=1.2e-18  Score=145.36  Aligned_cols=118  Identities=13%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC---CchhHHHhHHHHHHHHhhcCCCeEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA---NPMTFMSNMLYACSILYKTRLPLVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~  241 (324)
                      ...+.+|||||++++..  ...    .++.  .++++++|+|.+...   .....|...+   .. ...+.|+++|+||+
T Consensus        55 ~~~~~i~Dt~G~~~~~~--~~~----~~~~--~~~~~i~v~d~~~~~~s~~~~~~~~~~~---~~-~~~~~piilv~nK~  122 (184)
T 2zej_A           55 DLVLNVWDFAGREEFYS--THP----HFMT--QRALYLAVYDLSKGQAEVDAMKPWLFNI---KA-RASSSPVILVGTHL  122 (184)
T ss_dssp             -CEEEEEEECSHHHHHT--TSH----HHHH--HSEEEEEEEEGGGCHHHHHTHHHHHHHH---HH-HCTTCEEEEEEECG
T ss_pred             ceEEEEEecCCCHHHHH--hhH----HHcc--CCcEEEEEEeCCcchhHHHHHHHHHHHH---Hh-hCCCCcEEEEEECC
Confidence            56789999999877622  111    1111  246777888875542   2222332211   11 12478999999999


Q ss_pred             ccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCc----eeeeccccCC-ChHHHHHHHHHHHHHHH
Q 020549          242 DVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLK----SVGVSSVSGA-GIEAYFKAVEESAQEFM  316 (324)
Q Consensus       242 Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----iv~vSA~~g~-gv~~l~~~i~~~~~~~~  316 (324)
                      |+.+...........   ...+          +        ... +.+    ++++||++|. |+++|++.|.+.+....
T Consensus       123 Dl~~~~~~~~~~~~~---~~~~----------~--------~~~-~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          123 DVSDEKQRKACMSKI---TKEL----------L--------NKR-GFPAIRDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             GGCCHHHHHHHHHHH---HHHT----------T--------TCT-TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             CcccchhhHHHHHHH---HHHH----------H--------Hhc-CCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence            998754322111111   0000          0        001 233    8999999996 99999999998876543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.76  E-value=7.7e-19  Score=154.80  Aligned_cols=183  Identities=15%  Similarity=0.148  Sum_probs=99.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+|+|++|||||||+|+|++......            ...+..++.+..                 .+.+.   
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~------------~~~~~~~t~~~~-----------------~~~~~---   67 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFES------------KLGSQTLTKTCS-----------------KSQGS---   67 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCC------------CTTSCCCCCSCE-----------------EEEEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCccc------------CCCCCceeeeeE-----------------EEEEE---
Confidence            4568899999999999999999998753211            000100000000                 00010   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHH---HHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA---IITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~---~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                      ..+.++.||||||+.++.  .....   .+.+.+..  ..+|++|+|+|+.. +.....+.  +
T Consensus        68 ----------------~~~~~i~iiDTpG~~~~~--~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~--~  126 (260)
T 2xtp_A           68 ----------------WGNREIVIIDTPDMFSWK--DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQA--A  126 (260)
T ss_dssp             ----------------ETTEEEEEEECCGGGGSS--CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHH--H
T ss_pred             ----------------eCCCEEEEEECcCCCCCC--CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHH--H
Confidence                            225679999999988762  22211   22332222  35799999999975 44443221  1


Q ss_pred             HHHHHHhh--cCCCeEEEee-ccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccC
Q 020549          222 YACSILYK--TRLPLVLAFN-KTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSG  298 (324)
Q Consensus       222 ~~~~~~~~--~~~p~ilv~N-K~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g  298 (324)
                      ..+..+..  ...|.++|+| |+|+.... ...++....         ......+....+.   .+..+.+ +++||++|
T Consensus       127 ~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~---------~~~~~~~~~~~~~---~~~~~~~-~~~SA~~~  192 (260)
T 2xtp_A          127 QRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSD---------NKALSKLVAACGG---RICAFNN-RAEGSNQD  192 (260)
T ss_dssp             HHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCC---------CHHHHHHHHHTTT---CEEECCT-TCCHHHHH
T ss_pred             HHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcc---------hHHHHHHHHHhCC---eEEEecC-cccccccH
Confidence            11122211  1567888887 99998542 222111000         0000001111110   0001222 89999999


Q ss_pred             CChHHHHHHHHHHHHHHH
Q 020549          299 AGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       299 ~gv~~l~~~i~~~~~~~~  316 (324)
                      .|++++|..|.+.++..+
T Consensus       193 ~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          193 DQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            999999999999998755

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.76  E-value=8.2e-21  Score=160.54  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|.+|||||||+++|++..+......              +...+...                ..+...  
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~----------------~~~~~~--   78 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS--------------TIGVDFKI----------------RTIELD--   78 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHH--------------HHCCSEEE----------------EEEEET--
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--------------cccceEEE----------------EEEEEC--
Confidence            3468999999999999999999988765432110              00000000                000000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++......      .  -..+|++++|+|....... .....++..+..
T Consensus        79 ----------------~~~~~~~i~Dt~G~~~~~~~~~~------~--~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~  133 (199)
T 3l0i_B           79 ----------------GKTIKLQIWDTAGQERFRTITSS------Y--YRGAHGIIVVYDVTDQESF-NNVKQWLQEIDR  133 (199)
T ss_dssp             ----------------TEEEEEEEECCTTCTTCCCCSCC----------CCCSEEEECC-CCCSHHH-HHHHHHHHHHHS
T ss_pred             ----------------CEEEEEEEEECCCcHhHHHHHHH------H--hhcCCEEEEEEECCCHHHH-HHHHHHHHHHHH
Confidence                            11357899999998775211111      0  1346899999998763211 111111222222


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.......  ......+.                      . ..+.+++++||++|.||+++|.
T Consensus       134 ~~~~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          134 YASENVNKLLVGNKCDLTTKKVVD--YTTAKEFA----------------------D-SLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             CC-CCSEEEEC-CCSSCC--CCCC--SCC-CHHH----------------------H-TTTCCBCCCCC---HHHHHHHH
T ss_pred             hccCCCCEEEEEECccCCccccCC--HHHHHHHH----------------------H-HcCCeEEEEECCCCCCHHHHHH
Confidence            223478999999999997543210  00111110                      1 1246899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|.+.+.
T Consensus       189 ~l~~~l~  195 (199)
T 3l0i_B          189 TMAAEIK  195 (199)
T ss_dssp             HHTTTTT
T ss_pred             HHHHHHH
Confidence            9987653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.76  E-value=7.8e-19  Score=167.11  Aligned_cols=160  Identities=25%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|++|||||||+|+|++..+..            +...++.+    ++..              .+...     
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------v~~~~g~t----~~~~--------------~~~~~-----   67 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVT----RDRI--------------YSSAE-----   67 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC---------------------------CE--------------EEECT-----
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcc----eeEE--------------EEEEE-----
Confidence            5689999999999999999999875542            22222222    1100              00000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                    ..+..+.+|||||+...  .......+......  ..+|+++||+|+..++...+.+.     +..
T Consensus        68 --------------~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l-----~~~  126 (456)
T 4dcu_A           68 --------------WLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV-----AKI  126 (456)
T ss_dssp             --------------TCSSCCEEECCCC--------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHH-----HHH
T ss_pred             --------------ECCceEEEEECCCCCCc--chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHH-----HHH
Confidence                          23668999999996531  11112222222211  23799999999998887776442     244


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      +...++|+++|+||+|+.....  ... ++.                          .....+++++||++|.|+++|++
T Consensus       127 l~~~~~pvilV~NK~D~~~~~~--~~~-e~~--------------------------~lg~~~~~~iSA~~g~gv~~L~~  177 (456)
T 4dcu_A          127 LYRTKKPVVLAVNKLDNTEMRA--NIY-DFY--------------------------SLGFGEPYPISGTHGLGLGDLLD  177 (456)
T ss_dssp             HTTCCSCEEEEEECC-----------C-CSG--------------------------GGSSSSEEECCTTTCTTHHHHHH
T ss_pred             HHHcCCCEEEEEECccchhhhh--hHH-HHH--------------------------HcCCCceEEeecccccchHHHHH
Confidence            5667899999999999874321  011 110                          01234678999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .+.+.++
T Consensus       178 ~i~~~l~  184 (456)
T 4dcu_A          178 AVAEHFK  184 (456)
T ss_dssp             HHHTTGG
T ss_pred             HHHhhcc
Confidence            9988764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.76  E-value=2.9e-18  Score=152.42  Aligned_cols=87  Identities=9%  Similarity=0.120  Sum_probs=47.9

Q ss_pred             CcEEEEEEcCCC-CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHH
Q 020549          198 PTVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS  276 (324)
Q Consensus       198 ~d~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  276 (324)
                      +|+++|++++.. ++...+..     .+..+.. ++|+|+|+||+|+..........+.+.....               
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~-----~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~---------------  174 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIE-----FMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQ---------------  174 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHH-----HHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHH---------------
T ss_pred             eeEEEEEecCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHH---------------
Confidence            468888886544 55555422     2233444 8999999999999887654433333321110               


Q ss_pred             HHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       277 ~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                              ..+.+++++||++++|++++++.|.+.+|
T Consensus       175 --------~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          175 --------EHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             --------HTTCCCCCC-----------CHHHHHTCS
T ss_pred             --------HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence                    13578999999999999999999987654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.9e-18  Score=169.31  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-----CchhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-----NPMTFMSNMLYACSILYKTRLP-LVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-----~~~~~~~~~~~~~~~~~~~~~p-~ilv~  238 (324)
                      +..+.||||||++++..      .+..  ....+|++|+|||+..+.     .....+.   ..+..+...++| +|+|+
T Consensus       244 ~~~~~iiDTPG~e~f~~------~~~~--~~~~aD~~llVVDa~~g~~e~~~~~~~qt~---e~l~~~~~lgi~~iIVVv  312 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVP------NAIM--GISQADMAILCVDCSTNAFESGFDLDGQTK---EHMLLASSLGIHNLIIAM  312 (611)
T ss_dssp             SCEEEEEECCSSSCHHH------HHTT--TSSCCSEEEEEEECSHHHHHTTCCTTSHHH---HHHHHHHTTTCCEEEEEE
T ss_pred             CceEEEEECCCCcccHH------HHHH--HHhhcCceEEEEECCCCcccccchhhhHHH---HHHHHHHHcCCCeEEEEE
Confidence            56899999999877511      1111  114579999999998641     1112222   222344455655 89999


Q ss_pred             eccccCCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHH
Q 020549          239 NKTDVAQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       239 NK~Dl~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l  304 (324)
                      ||+|+++.  ....+....+..+...+                   .+ ....+++++||++|.||+++
T Consensus       313 NKiDl~~~~~~~~~ei~~~l~~~l~~~-------------------g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          313 NKMDNVDWSQQRFEEIKSKLLPYLVDI-------------------GFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             ECTTTTTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGCEEEECCTTTCTTTSSC
T ss_pred             ecccccchhHHHHHHHHHHHHHHHHhh-------------------cccccCccEEeeecccCCCcccc
Confidence            99999872  22222222332221111                   11 12478999999999999876

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.75  E-value=5e-18  Score=155.51  Aligned_cols=198  Identities=16%  Similarity=0.137  Sum_probs=112.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++.+|+++|++|+|||||+++|++.....++.+.++..|+..+...+.. .  .+    ...++.+...+++.+++...
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i-l--~d----~~~~~~~~~~~~~~i~~~~~  126 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI-L--GD----KTRMNDLARAEAAFIRPVPS  126 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEECC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce-e--cc----cchHHhhccCCCceeecCcc
Confidence            46788999999999999999999988777777888887777543221110 0  00    01112223333333322110


Q ss_pred             --ccChHHHHHHHHHH-HHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          147 --LFTTKFDEVISLIE-RRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       147 --~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                        .+..........+. ....+.+++||||||+.++..      .+     ...+|++++|+|+..+..... +   .. 
T Consensus       127 ~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------~~-----~~~aD~vl~Vvd~~~~~~~~~-l---~~-  190 (341)
T 2p67_A          127 SGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET------EV-----ARMVDCFISLQIAGGGDDLQG-I---KK-  190 (341)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH------HH-----HTTCSEEEEEECC------CC-C---CH-
T ss_pred             ccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH------HH-----HHhCCEEEEEEeCCccHHHHH-H---HH-
Confidence              01112222222221 124578999999999876411      11     246799999999865422111 0   00 


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc------cCceeeecccc
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK------NLKSVGVSSVS  297 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~iv~vSA~~  297 (324)
                          ...++|.++|+||+|+............+....                      ..+.      ..+++++||++
T Consensus       191 ----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l----------------------~~~~~~~~~~~~~vi~iSA~~  244 (341)
T 2p67_A          191 ----GLMEVADLIVINKDDGDNHTNVAIARHMYESAL----------------------HILRRKYDEWQPRVLTCSALE  244 (341)
T ss_dssp             ----HHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHH----------------------HHSCCSBTTBCCEEEECBGGG
T ss_pred             ----hhhcccCEEEEECCCCCChHHHHHHHHHHHHHH----------------------HhccccccCCCCcEEEeeCCC
Confidence                112468899999999987543322222222110                      1111      35789999999


Q ss_pred             CCChHHHHHHHHHHHH
Q 020549          298 GAGIEAYFKAVEESAQ  313 (324)
Q Consensus       298 g~gv~~l~~~i~~~~~  313 (324)
                      |.|+++|++.|.+.++
T Consensus       245 g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          245 KRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998775

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=153.41  Aligned_cols=198  Identities=18%  Similarity=0.185  Sum_probs=104.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCC--------CC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGP--------NG  139 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~  139 (324)
                      .+.+|+|+|+||||||||+|+|++.....++.+.++..|+...... +      ..+.....|..++..+        .+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~-g------~~l~d~~rm~~~~~~~~~~v~~~~~~  145 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG-G------SLLGDKTRMTELSRDMNAYIRPSPTR  145 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTTEEEECC---
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcC-c------chhchHHHHHHhcCCCCEEEEecCCc
Confidence            4788999999999999999999998777777888888877543210 0      0000001111111111        01


Q ss_pred             cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHh
Q 020549          140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSN  219 (324)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~  219 (324)
                      |.++   .........+..+.  ..+.+++|+||||+....      ..+     ...+|++++|+|+..+.....    
T Consensus       146 ~~lg---g~tr~~~~~~~~~~--~~~~~~iliDT~Gi~~~~------~~l-----~~~~d~vl~V~d~~~~~~~~~----  205 (349)
T 2www_A          146 GTLG---GVTRTTNEAILLCE--GAGYDIILIETVGVGQSE------FAV-----ADMVDMFVLLLPPAGGDELQG----  205 (349)
T ss_dssp             ---------CTTHHHHHHHHH--HTTCSEEEEECCCC--CH------HHH-----HTTCSEEEEEECCC-----------
T ss_pred             cccc---cchHHHHHHHHhhc--cCCCCEEEEECCCcchhh------hhH-----HhhCCEEEEEEcCCcchhHHH----
Confidence            1110   01111111111111  357899999999975431      111     235799999999876532111    


Q ss_pred             HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeeccccC
Q 020549          220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVSG  298 (324)
Q Consensus       220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~g  298 (324)
                       +.  .  .-...|.++|+||+|+.+..........+.   ..+.              ..... .....+++++||++|
T Consensus       206 -i~--~--~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~---~~l~--------------~~~~~a~~~~~~vi~iSA~~g  263 (349)
T 2www_A          206 -IK--R--GIIEMADLVAVTKSDGDLIVPARRIQAEYV---SALK--------------LLRKRSQVWKPKVIRISARSG  263 (349)
T ss_dssp             ----------CCSCSEEEECCCSGGGHHHHHHHHHHHH---HHHT--------------TCC-----CCCEEEECCTTTC
T ss_pred             -hH--H--HHHhcCCEEEEeeecCCCchhHHHHHHHHH---HHHH--------------hcCccccCCCceEEEEecCCC
Confidence             10  0  113578999999999975432211111111   1110              00000 001357899999999


Q ss_pred             CChHHHHHHHHHHHHH
Q 020549          299 AGIEAYFKAVEESAQE  314 (324)
Q Consensus       299 ~gv~~l~~~i~~~~~~  314 (324)
                      .|+++|++.|.+.++.
T Consensus       264 ~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          264 EGISEMWDKMKDFQDL  279 (349)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999987754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.75  E-value=6.1e-19  Score=172.34  Aligned_cols=117  Identities=21%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-------CchhHHHhHHHHHHHHhhcCCC-eEE
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LVL  236 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~~~~p-~il  236 (324)
                      +..+.||||||+++|......+.        ..+|++|+|||+..+.       ..++.     ..+..+...++| +|+
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~--------~~aD~alLVVDa~~g~~e~gi~~~~qt~-----e~l~~~~~lgip~iIv  320 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGA--------SSADFAVLVVDSSQNNFERGFLENGQTR-----EHAYLLRALGISEIVV  320 (592)
T ss_dssp             -----CCEEESSSEEEEECCC---------------CCSEEEEEECCSSTTSCSCSSHH-----HHHHHHHHSSCCCEEE
T ss_pred             CeEEEEEECCChHHHHHHHHHHH--------hhCCEEEEEEECCCCccccccccchHHH-----HHHHHHHHcCCCeEEE
Confidence            56889999999988732111111        2368999999998753       33332     222345567787 889


Q ss_pred             EeeccccCC--hHhHHHHHHhHHHHH-HHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChH----------
Q 020549          237 AFNKTDVAQ--HEFALEWMQDFEVFQ-AAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIE----------  302 (324)
Q Consensus       237 v~NK~Dl~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~----------  302 (324)
                      |+||+|++.  ..........+..+. +.+                   .+ ....+++++||++|.||+          
T Consensus       321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~-------------------g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w  381 (592)
T 3mca_A          321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMV-------------------GFKTSNVHFVPISAISGTNLIQKDSSDLYKW  381 (592)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHHTTTS-------------------CCCGGGEEEEEECSSSCSSSCSCCCCGGGGT
T ss_pred             EEeccccccccHHHHHHHHHHHHHHHHHhh-------------------CCCccceEEEEEecccCcccccccccccccc
Confidence            999999986  333332333332111 000                   00 123589999999999998          


Q ss_pred             ----HHHHHHHHHHH
Q 020549          303 ----AYFKAVEESAQ  313 (324)
Q Consensus       303 ----~l~~~i~~~~~  313 (324)
                          .|++.|...++
T Consensus       382 ~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          382 YKGPTLLSALDQLVP  396 (592)
T ss_dssp             CCSCCHHHHHHTSCC
T ss_pred             cchHHHHHHHHhhcc
Confidence                78888876543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.75  E-value=4.5e-18  Score=158.99  Aligned_cols=117  Identities=14%  Similarity=0.139  Sum_probs=75.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      ...+.||||||+++|..      .+...  ...+|++++|+|+.++...++.     ..+..+...++| +|+|+||+|+
T Consensus        65 ~~~~~iiDtpG~~~f~~------~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~vp~iivviNK~Dl  131 (397)
T 1d2e_A           65 ARHYAHTDCPGHADYVK------NMITG--TAPLDGCILVVAANDGPMPQTR-----EHLLLARQIGVEHVVVYVNKADA  131 (397)
T ss_dssp             SCEEEEEECSSHHHHHH------HHHHT--SSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCCEEEEEECGGG
T ss_pred             CeEEEEEECCChHHHHH------HHHhh--HhhCCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCeEEEEEECccc
Confidence            57899999999877511      12111  2457999999999998765542     122344456889 5899999999


Q ss_pred             CChH-hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCC----------hHHHHHHHHHH
Q 020549          244 AQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAG----------IEAYFKAVEES  311 (324)
Q Consensus       244 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~g----------v~~l~~~i~~~  311 (324)
                      .+.. ......+++..+.+..                   .+. ...+++++||++|.|          +++|++.|.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          132 VQDSEMVELVELEIRELLTEF-------------------GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHT-------------------TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHc-------------------CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence            8532 2222222232222111                   010 136899999999875          88999999887


Q ss_pred             HH
Q 020549          312 AQ  313 (324)
Q Consensus       312 ~~  313 (324)
                      ++
T Consensus       193 ~p  194 (397)
T 1d2e_A          193 IP  194 (397)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.75  E-value=1.7e-18  Score=168.03  Aligned_cols=175  Identities=14%  Similarity=0.165  Sum_probs=94.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ....+|+++|.+|||||||+++|++..+.....+++ +.+......+.+     +                  .+...  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~-g~~~~~~~~~~~-----~------------------~v~~~--   92 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTH-GLNVVTKQAPNI-----K------------------GLEND--   92 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGS-----G------------------GGTTC--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-ceEEEEeccccc-----c------------------ceeec--
Confidence            456899999999999999999999987654332222 000000000000     0                  00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                         .           ......+.||||||++++..  ....    .+  ..+|++++|+|++.. .....|...+   ..
T Consensus        93 ---~-----------~~~~~~~~i~Dt~G~e~~~~--~~~~----~l--~~~d~ii~V~D~s~~-~~~~~~~~~l---~~  146 (535)
T 3dpu_A           93 ---D-----------ELKECLFHFWDFGGQEIMHA--SHQF----FM--TRSSVYMLLLDSRTD-SNKHYWLRHI---EK  146 (535)
T ss_dssp             ---S-----------TTTTCEEEEECCCSCCTTTT--TCHH----HH--HSSEEEEEEECGGGG-GGHHHHHHHH---HH
T ss_pred             ---C-----------CCceEEEEEEECCcHHHHHH--HHHH----Hc--cCCcEEEEEEeCCCc-hhHHHHHHHH---HH
Confidence               0           02257899999999887632  1111    11  236899999998654 3333443332   22


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      . ..+.|+|+|+||+|+.......  .+....+.                      . ..+.+++++||++|.||++|+.
T Consensus       147 ~-~~~~pvilV~NK~Dl~~~~~v~--~~~~~~~~----------------------~-~~~~~~~~vSA~~g~gi~eL~~  200 (535)
T 3dpu_A          147 Y-GGKSPVIVVMNKIDENPSYNIE--QKKINERF----------------------P-AIENRFHRISCKNGDGVESIAK  200 (535)
T ss_dssp             H-SSSCCEEEEECCTTTCTTCCCC--HHHHHHHC----------------------G-GGTTCEEECCC-----CTTHHH
T ss_pred             h-CCCCCEEEEEECCCcccccccC--HHHHHHHH----------------------H-hcCCceEEEecCcccCHHHHHH
Confidence            2 2369999999999997643210  01111000                      0 1135799999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 020549          307 AVEESAQEFMETY  319 (324)
Q Consensus       307 ~i~~~~~~~~~~~  319 (324)
                      .|.+.+...+..+
T Consensus       201 ~l~~~~~~~~~~~  213 (535)
T 3dpu_A          201 SLKSAVLHPDSIY  213 (535)
T ss_dssp             HHHHHHTCTTSGG
T ss_pred             HHHHHHhcccchh
Confidence            9999886644433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=146.91  Aligned_cols=88  Identities=23%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             CcEEEEEEcCCCC----CCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhH
Q 020549          198 PTVVTYVVDTPRS----ANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTL  273 (324)
Q Consensus       198 ~d~iv~vvD~~~~----~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l  273 (324)
                      +|++++|+|....    +.....|...+.  ......++|+++|+||+|+......    +....+.             
T Consensus       163 ad~vilV~D~t~~~~~s~~~~~~~l~~i~--~~~~~~~~piilV~NK~Dl~~~~~v----~~~~~~~-------------  223 (255)
T 3c5h_A          163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLY--NQLAKTKKPIVVVLTKCDEGVERYI----RDAHTFA-------------  223 (255)
T ss_dssp             CCEEEEEEECBC----CHHHHHHHHHHHH--HHHHHTTCCEEEEEECGGGBCHHHH----HHHHHHH-------------
T ss_pred             CCEEEEEEECCCCchhhHHHHHHHHHHHH--HHhccCCCCEEEEEEcccccccHHH----HHHHHHH-------------
Confidence            6999999998764    222233432221  1223457999999999999765432    1222111             


Q ss_pred             HHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          274 TNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       274 ~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                               ....+.+++++||++|.||+++|+.|.+.+.
T Consensus       224 ---------~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          224 ---------LSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ---------HTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---------HhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence                     1112568999999999999999999988763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.75  E-value=9.2e-18  Score=143.58  Aligned_cols=120  Identities=20%  Similarity=0.287  Sum_probs=74.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|++|||||||+++|++..+...           ...+..+...+                           
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----------~~~~~~~~~~~---------------------------   51 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------VVSQEPLSAAD---------------------------   51 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----------CCCSSCEEETT---------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----------eeecCceEEEE---------------------------
Confidence            4568899999999999999999998865421           11111111000                           


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCC---CCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTP---RSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~---~~~~~~~~~~~~~  221 (324)
                                      .....+.||||||+.++.  .    .+..+++.  ..+|++++|+|+.   .++.....|...+
T Consensus        52 ----------------~~~~~~~l~Dt~G~~~~~--~----~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~  109 (218)
T 1nrj_B           52 ----------------YDGSGVTLVDFPGHVKLR--Y----KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI  109 (218)
T ss_dssp             ----------------GGGSSCEEEECCCCGGGT--H----HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred             ----------------eeCceEEEEECCCcHHHH--H----HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence                            014688999999997762  1    12222222  2358999999988   3333333332111


Q ss_pred             HHHHHH---hhcCCCeEEEeeccccCChHh
Q 020549          222 YACSIL---YKTRLPLVLAFNKTDVAQHEF  248 (324)
Q Consensus       222 ~~~~~~---~~~~~p~ilv~NK~Dl~~~~~  248 (324)
                        +...   ...++|+++|+||+|+.....
T Consensus       110 --~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B          110 --LSITESSCENGIDILIACNKSELFTARP  137 (218)
T ss_dssp             --HHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             --HhcccccccCCCCEEEEEEchHhcccCC
Confidence              1111   235899999999999987643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.75  E-value=1.4e-17  Score=160.36  Aligned_cols=70  Identities=20%  Similarity=0.249  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.+|..      ...+.+  ..+|++|+|+|+..+...++.     ..+..+...++|+++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~allVvDa~~g~~~~t~-----~~~~~~~~~~iPiivviNK~Dl~  147 (528)
T 3tr5_A           81 DYLINLLDTPGHADFTE------DTYRTL--TAVDSALMVIDAAKGVEPRTI-----KLMEVCRLRHTPIMTFINKMDRD  147 (528)
T ss_dssp             TEEEEEECCCCSTTCCH------HHHHGG--GGCSEEEEEEETTTCSCHHHH-----HHHHHHHTTTCCEEEEEECTTSC
T ss_pred             CEEEEEEECCCchhHHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCEEEEEeCCCCc
Confidence            56889999999988622      122222  346999999999998766542     22244556789999999999997


Q ss_pred             ChH
Q 020549          245 QHE  247 (324)
Q Consensus       245 ~~~  247 (324)
                      ...
T Consensus       148 ~~~  150 (528)
T 3tr5_A          148 TRP  150 (528)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.75  E-value=6.5e-18  Score=158.40  Aligned_cols=117  Identities=18%  Similarity=0.193  Sum_probs=75.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      ...+.||||||+++|.      ..+...+  ..+|++++|+|+.++...+.     ...+..+...++| +|+|+||+|+
T Consensus        74 ~~~~~iiDtpG~~~f~------~~~~~~~--~~aD~~ilVvda~~g~~~qt-----~~~l~~~~~~~ip~iivviNK~Dl  140 (405)
T 2c78_A           74 KRHYSHVDCPGHADYI------KNMITGA--AQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFMNKVDM  140 (405)
T ss_dssp             SCEEEEEECCCSGGGH------HHHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             CeEEEEEECCChHHHH------HHHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCEEEEEEECccc
Confidence            5789999999988762      1222222  35799999999998876543     1122344456889 7899999999


Q ss_pred             CCh-HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCC------------------hHH
Q 020549          244 AQH-EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAG------------------IEA  303 (324)
Q Consensus       244 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~g------------------v~~  303 (324)
                      ... +.......++..+.+.+                   .+ ....+++++||++|.|                  +++
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~  201 (405)
T 2c78_A          141 VDDPELLDLVEMEVRDLLNQY-------------------EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWE  201 (405)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHT-------------------TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHh-------------------cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHH
Confidence            853 22222222222222110                   00 0137899999999987                  788


Q ss_pred             HHHHHHHHHH
Q 020549          304 YFKAVEESAQ  313 (324)
Q Consensus       304 l~~~i~~~~~  313 (324)
                      |++.|.+.++
T Consensus       202 Ll~~l~~~lp  211 (405)
T 2c78_A          202 LLDAIDEYIP  211 (405)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHhhcC
Confidence            8888877665

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.75  E-value=5.4e-18  Score=153.12  Aligned_cols=169  Identities=17%  Similarity=0.177  Sum_probs=98.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|.+|||||||+++|++.....            +...+.+| ++...                 +...    
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------~~~~~~~T-i~~~~-----------------~~~~----   47 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAF------------DTRRLGAT-IDVEH-----------------SHLR----   47 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTG------------GGGGCCCC-CSEEE-----------------EEEE----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCc------------cccCcCCc-cceEE-----------------EEEE----
Confidence            34789999999999999999998873321            11111111 11000                 0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhH-HHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG-AIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~  224 (324)
                      +              .....+.||||||++++.  .... ......+  ..+|++++|+|+....  .....|...+..+
T Consensus        48 ~--------------~~~~~l~i~Dt~G~~~~~--~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l  109 (307)
T 3r7w_A           48 F--------------LGNMTLNLWDCGGQDVFM--ENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDIEIFAKALKQL  109 (307)
T ss_dssp             E--------------TTTEEEEEEEECCSHHHH--HHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHHHHHHHHHHHH
T ss_pred             e--------------CCceEEEEEECCCcHHHh--hhhhhhHHHHHh--ccCCEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence            0              124678999999987751  1100 0111111  3469999999987643  2223343333222


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHH----HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc--cCceeeeccccC
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWM----QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVGVSSVSG  298 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~iv~vSA~~g  298 (324)
                      .. ...++|+++|+||+|+...+......    .....+.                      ..++  ..+++++||++ 
T Consensus       110 ~~-~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~----------------------~~~g~~~~~~~~tSa~~-  165 (307)
T 3r7w_A          110 RK-YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS----------------------SEFGFPNLIGFPTSIWD-  165 (307)
T ss_dssp             HH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH----------------------HTTTCCSCEEEECCTTS-
T ss_pred             HH-hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH----------------------HHcCCCCeEEEEeeecC-
Confidence            11 13479999999999999854332111    1111111                      1122  37899999999 


Q ss_pred             CChHHHHHHHHHHH
Q 020549          299 AGIEAYFKAVEESA  312 (324)
Q Consensus       299 ~gv~~l~~~i~~~~  312 (324)
                      .|+.++|..+...+
T Consensus       166 ~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          166 ESLYKAWSQIVCSL  179 (307)
T ss_dssp             SHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHH
Confidence            88999988887654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.74  E-value=4.1e-19  Score=169.28  Aligned_cols=161  Identities=20%  Similarity=0.303  Sum_probs=100.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++++|+++|++|+|||||+++|.+..+..+...       +.       +.++.                  .....   
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~-------GI-------T~~i~------------------~~~v~---   47 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG-------GI-------TQHIG------------------AYHVE---   47 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC-------CC-------CCCSS------------------CCCCC---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC-------Ce-------eEeEE------------------EEEEE---
Confidence            567899999999999999999998655432110       00       00000                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     ..+..+.||||||+.+|......+        ...+|++++|+|+.++..+++.     ..+..+
T Consensus        48 ---------------~~~~~i~~iDTPGhe~f~~~~~~~--------~~~aD~aILVVda~~g~~~qT~-----e~l~~~   99 (501)
T 1zo1_I           48 ---------------TENGMITFLDTPGHAAFTSMRARG--------AQATDIVVLVVAADDGVMPQTI-----EAIQHA   99 (501)
T ss_dssp             ---------------TTSSCCCEECCCTTTCCTTSBCSS--------SBSCSSEEEEEETTTBSCTTTH-----HHHHHH
T ss_pred             ---------------ECCEEEEEEECCCcHHHHHHHHHH--------HhhCCEEEEEeecccCccHHHH-----HHHHHH
Confidence                           124578899999988873211111        1347999999999998776652     222445


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+|+|+||+|+...... .....+.           ..       +...+.+....+++++||++|.|+++|++.
T Consensus       100 ~~~~vPiIVviNKiDl~~~~~~-~v~~~l~-----------~~-------~~~~~~~~~~~~~v~vSAktG~gI~eLle~  160 (501)
T 1zo1_I          100 KAAQVPVVVAVNKIDKPEADPD-RVKNELS-----------QY-------GILPEEWGGESQFVHVSAKAGTGIDELLDA  160 (501)
T ss_dssp             HHTTCCEEEEEECSSSSTTCCC-CTTCCCC-----------CC-------CCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred             HhcCceEEEEEEeccccccCHH-HHHHHHH-----------Hh-------hhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence            5678999999999999753210 0111100           00       000001222468999999999999999999


Q ss_pred             HHH
Q 020549          308 VEE  310 (324)
Q Consensus       308 i~~  310 (324)
                      |..
T Consensus       161 I~~  163 (501)
T 1zo1_I          161 ILL  163 (501)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.74  E-value=7.5e-19  Score=164.67  Aligned_cols=164  Identities=22%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|+|||||+|+|++..+..            +...++++ .+...                 ....   
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------~~~~~gtT-~d~~~-----------------~~~~---   78 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------VSDYAGTT-TDPVY-----------------KSME---   78 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC--------------------------CCCCE-----------------EEEE---
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------cCCCCCee-eeeEE-----------------EEEE---
Confidence            456789999999999999999999876532            11111111 00000                 0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                       +              .....+.||||||+.++..... ........+  ..+|++++|+|+  +.....  .   ..+.
T Consensus        79 -~--------------~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~--~---~~l~  134 (423)
T 3qq5_A           79 -L--------------HPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYE--D---DVVN  134 (423)
T ss_dssp             -E--------------TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHH--H---HHHH
T ss_pred             -E--------------CCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHH--H---HHHH
Confidence             0              1112789999999987632111 111122222  347999999998  333222  1   1223


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .+...++|+|+|+||+|+...... +..+.+.                         +. -+.+++++||++|.|+++++
T Consensus       135 ~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~-------------------------~~-~g~~v~~vSAktg~gI~eL~  187 (423)
T 3qq5_A          135 LFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYE-------------------------SR-YEAKVLLVSALQKKGFDDIG  187 (423)
T ss_dssp             HHHHTTCCEEEECCCCTTTTCCCT-HHHHHSS-------------------------CC-TTCCCCCCSSCCTTSTTTHH
T ss_pred             HHHhcCCCEEEEEeCcCCCCccHH-HHHHHHH-------------------------HH-cCCCEEEEECCCCCCHHHHH
Confidence            445568999999999999876432 1111110                         11 14689999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+++
T Consensus       188 ~~L~~~l~~  196 (423)
T 3qq5_A          188 KTISEILPG  196 (423)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhhhh
Confidence            999998854

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.73  E-value=2e-17  Score=160.95  Aligned_cols=112  Identities=17%  Similarity=0.246  Sum_probs=76.0

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+.||||||+.+|..      .+.+.+  ..+|.+++|+|+.++...++.     ..+......++|+|+|+||+|+..
T Consensus        73 ~~inliDTPGh~dF~~------ev~r~l--~~aD~aILVVDa~~gv~~qt~-----~~~~~a~~~~ipiIvviNKiDl~~  139 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSY------EVSRAL--AACEGALLLIDASQGIEAQTV-----ANFWKAVEQDLVIIPVINKIDLPS  139 (600)
T ss_dssp             EEEEEECCCCSGGGHH------HHHHHH--HTCSEEEEEEETTTBCCHHHH-----HHHHHHHHTTCEEEEEEECTTSTT
T ss_pred             EEEEEEECCCcHhHHH------HHHHHH--HhCCEEEEEEECCCCccHHHH-----HHHHHHHHCCCCEEEEEeccCccc
Confidence            5788999999988722      223333  346999999999998876542     112234457899999999999986


Q ss_pred             hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          246 HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      .. .....+++.   +.+              +      ....+++++||++|.||++|++.|.+.++.
T Consensus       140 a~-~~~v~~el~---~~l--------------g------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          140 AD-VDRVKKQIE---EVL--------------G------LDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             CC-HHHHHHHHH---HTS--------------C------CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             cC-HHHHHHHHH---Hhh--------------C------CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            43 111222221   100              0      112368999999999999999999988764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.73  E-value=2.4e-17  Score=155.82  Aligned_cols=108  Identities=19%  Similarity=0.225  Sum_probs=67.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl  243 (324)
                      ...+.||||||+++|..      .+...+  ..+|++++|+|+.++...+...  .+   ..+...+. |+|+|+||+|+
T Consensus       103 ~~~~~iiDtpGh~~f~~------~~~~~~--~~aD~~ilVvDa~~g~~~qt~~--~l---~~~~~~~~~~iIvviNK~Dl  169 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTR------NMATGA--STCDLAIILVDARYGVQTQTRR--HS---YIASLLGIKHIVVAINKMDL  169 (434)
T ss_dssp             SEEEEEEECCCSGGGHH------HHHHHH--TTCSEEEEEEETTTCSCHHHHH--HH---HHHHHTTCCEEEEEEECTTT
T ss_pred             CceEEEEECCChHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHHHH--HH---HHHHHcCCCeEEEEEEcCcC
Confidence            45789999999887621      222222  4579999999999887655421  12   23334565 58999999999


Q ss_pred             CCh--HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHHH
Q 020549          244 AQH--EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       244 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .+.  +......+++..+.+.+                   .+ ....+++++||++|.|++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~-------------------g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFAEGI-------------------AFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTT-------------------TCCCSEEEEEECCTTTCTTTSSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHh-------------------CCCccCceEEEEeccCCCCcccc
Confidence            863  22222222332222110                   00 12368999999999999984

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.72  E-value=2e-17  Score=161.14  Aligned_cols=111  Identities=18%  Similarity=0.310  Sum_probs=76.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||+.+|..      .+.+.++  .+|.+++|+|+.++...++..     .+......++|+|+|+||+|+.
T Consensus        70 ~~~l~liDTPGh~dF~~------ev~~~l~--~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~  136 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSY------EVSRSLA--ACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLP  136 (599)
T ss_dssp             EEEEEEEECCCCGGGHH------HHHHHHH--HCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTST
T ss_pred             eEEEEEEECCCchHHHH------HHHHHHH--HCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCcc
Confidence            35788999999988732      2223332  259999999999988766521     1223345689999999999998


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc--cCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK--NLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      ... .....+++.                         +.+.  ..+++++||++|.|+++|++.|.+.++.
T Consensus       137 ~a~-~~~v~~ei~-------------------------~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          137 AAD-PERVAEEIE-------------------------DIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             TCC-HHHHHHHHH-------------------------HHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             ccc-HHHHHHHHH-------------------------HHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            643 111222221                         1111  2369999999999999999999988764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=1e-17  Score=143.72  Aligned_cols=180  Identities=15%  Similarity=0.159  Sum_probs=103.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILT  143 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~  143 (324)
                      +..+|+++|++|||||||+++|++..... ..+.++..++...          .+..    .+...+.    ...+|+++
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~----------~d~~----~~~~~~~~~~~~~~~~~~~   93 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK----------ADYE----RVRRFGIKAEAISTGKECH   93 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH----------HHHH----HHHTTTCEEEECCCTTCSS
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc----------hhHH----HHHhCCCcEEEecCCceee
Confidence            45789999999999999999999886544 4455555444321          1110    1111111    12233322


Q ss_pred             cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                          +.....  ...+. .....+++||||+|+...  ...        + ....+.+++|+|+..+..  ..|.     
T Consensus        94 ----~~~~~~--~~~~~-~~~~~d~iiidt~G~~~~--~~~--------~-~~~~~~~i~vvd~~~~~~--~~~~-----  148 (221)
T 2wsm_A           94 ----LDAHMI--YHRLK-KFSDCDLLLIENVGNLIC--PVD--------F-DLGENYRVVMVSVTEGDD--VVEK-----  148 (221)
T ss_dssp             ----CCHHHH--HTTGG-GGTTCSEEEEEEEEBSSG--GGG--------C-CCSCSEEEEEEEGGGCTT--HHHH-----
T ss_pred             ----cccHHH--HHHHH-hcCCCCEEEEeCCCCCCC--Cch--------h-ccccCcEEEEEeCCCcch--hhhh-----
Confidence                111111  01111 234789999999996221  000        0 012468899999876532  1121     


Q ss_pred             HHHHhhcCCCeEEEeeccccCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                        .....+.|+++|+||+|+.+..  ...+..+.+.                         .+.+..+++++||++|.|+
T Consensus       149 --~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~~~Sa~~g~gi  201 (221)
T 2wsm_A          149 --HPEIFRVADLIVINKVALAEAVGADVEKMKADAK-------------------------LINPRAKIIEMDLKTGKGF  201 (221)
T ss_dssp             --CHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHH-------------------------HHCTTSEEEECBTTTTBTH
T ss_pred             --hhhhhhcCCEEEEecccCCcchhhHHHHHHHHHH-------------------------HhCCCCeEEEeecCCCCCH
Confidence              1112358999999999986431  1111111111                         2223578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQE  314 (324)
Q Consensus       302 ~~l~~~i~~~~~~  314 (324)
                      +++++.|.+.+..
T Consensus       202 ~~l~~~l~~~~~~  214 (221)
T 2wsm_A          202 EEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987744

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.72  E-value=2.1e-17  Score=152.13  Aligned_cols=119  Identities=13%  Similarity=0.037  Sum_probs=72.7

Q ss_pred             CCCEEEEeCCCCcchhh----hh---hhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549          165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~----~~---~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  237 (324)
                      ..++.||||||+.+...    ..   .....+..++ ....+++++++|+...+...+ +.   ..+..+...+.|+++|
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiL~v~~a~~~~~~~~-~~---~i~~~~~~~~~~~i~V  203 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSD-AL---KVAKEVDPQGQRTIGV  203 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHH-TSTTEEEEEEEETTSCGGGCH-HH---HHHHHHCTTCTTEEEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHH-cCCCeEEEEEecCCCccchhH-HH---HHHHHhCcCCCceEEE
Confidence            46899999999865211    00   1222222333 344578888888876554443 21   1234455678999999


Q ss_pred             eeccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHH
Q 020549          238 FNKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEES  311 (324)
Q Consensus       238 ~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~  311 (324)
                      +||+|+.+... .....+...                       ......+.+++++||++|.|++++++.+.+.
T Consensus       204 ~NK~Dl~~~~~~~~~~~~~~~-----------------------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          204 ITKLDLMDEGTDARDVLENKL-----------------------LPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             EECGGGSCTTCCCHHHHTTCS-----------------------SCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             eccccccCcchhHHHHHhCCc-----------------------ccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            99999986542 111111000                       0000124578999999999999999999873

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.72  E-value=4.5e-17  Score=153.97  Aligned_cols=110  Identities=18%  Similarity=0.248  Sum_probs=67.2

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC-------CCchhHHHhHHHHHHHHhhcCC-CeE
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILYKTRL-PLV  235 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~~~~~-p~i  235 (324)
                      ....+.||||||+.+|..      .+...  ...+|++++|+|+.++       +..+.     ...+..+...++ |+|
T Consensus        82 ~~~~~~iiDtpG~~~f~~------~~~~~--~~~aD~~ilVvDa~~gsfe~~~~~~~qt-----~~~~~~~~~~~~~~ii  148 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVK------NMITG--ASQADAAILVVSAKKGEYEAGMSVEGQT-----REHIILAKTMGLDQLI  148 (435)
T ss_dssp             SSCEEEECCCSSSTTHHH------HHHHT--SSCCSEEEEEEECSTTHHHHHHSTTCHH-----HHHHHHHHHTTCTTCE
T ss_pred             CCeEEEEEECCCcHHHHH------HHHhh--hhhcCEEEEEEECCCCccccccccchHH-----HHHHHHHHHcCCCeEE
Confidence            357899999999988621      12221  2457999999999886       33332     222233444565 589


Q ss_pred             EEeeccccCCh----HhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHHH
Q 020549          236 LAFNKTDVAQH----EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       236 lv~NK~Dl~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~  305 (324)
                      +|+||+|+.+.    +......+++..+.+.+                   .+. ...+++++||++|.|+.+++
T Consensus       149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY-------------------GFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHT-------------------TCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             EEEEcccCCCccccHHHHHHHHHHHHHHHHHc-------------------CCCcCCceEEEeecccCccccccc
Confidence            99999999873    22222333333222111                   010 13689999999999998543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.71  E-value=3.4e-17  Score=138.24  Aligned_cols=163  Identities=17%  Similarity=0.217  Sum_probs=95.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|++|||||||+++|++..+...+.++       .. ..+..                      +.+...    
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t-------~~-~~~~~----------------------~~i~~~----   50 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST-------IG-VEFAT----------------------RSIQVD----   50 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CC-------CS-CEEEE----------------------EEEEET----
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-------cc-eeEEE----------------------EEEEEC----
Confidence            478999999999999999999998765322110       00 00000                      000000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~  226 (324)
                                    +....+.||||||+.++.  .....    .+  ..++.+++|+|......  ....|..   .+..
T Consensus        51 --------------g~~~~~~i~Dt~g~~~~~--~~~~~----~~--~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~  105 (199)
T 2f9l_A           51 --------------GKTIKAQIWDTAGQERYR--RITSA----YY--RGAVGALLVYDIAKHLTYENVERWLK---ELRD  105 (199)
T ss_dssp             --------------TEEEEEEEEECSSGGGTT--CCCHH----HH--TTCSEEEEEEETTCHHHHHTHHHHHH---HHHH
T ss_pred             --------------CEEEEEEEEECCCchhhh--hhhHH----HH--hcCCEEEEEEECcCHHHHHHHHHHHH---HHHH
Confidence                          123467899999987652  11111    11  23578899999865321  1122221   1122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.......  ......+.                      . .....++++||+++.|++++++
T Consensus       106 ~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~----------------------~-~~~~~~~d~Sal~~~~i~~l~~  160 (199)
T 2f9l_A          106 HADSNIVIMLVGNKSDLRHLRAVP--TDEARAFA----------------------E-KNNLSFIETSALDSTNVEEAFK  160 (199)
T ss_dssp             HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHHHH
T ss_pred             hcCCCCeEEEEEECcccccccCcC--HHHHHHHH----------------------H-HcCCeEEEEeCCCCCCHHHHHH
Confidence            223568999999999996532110  00111111                      1 1346789999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          307 AVEESAQEF  315 (324)
Q Consensus       307 ~i~~~~~~~  315 (324)
                      .|.+.+...
T Consensus       161 ~l~~~~~~~  169 (199)
T 2f9l_A          161 NILTEIYRI  169 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.71  E-value=1.4e-16  Score=135.21  Aligned_cols=173  Identities=11%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ...+.+|+|+|++|||||||+|+|++..+...           +...++++..                    .+...  
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~-----------~~~~~G~~~~--------------------~~~~~--   69 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR-----------TSKTPGRTQL--------------------INLFE--   69 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC------------------------CC--------------------EEEEE--
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCcccc-----------ccCCCcccee--------------------eEEEE--
Confidence            45678999999999999999999998753210           1111111100                    00000  


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                                       . ...+.+|||||+.....    +......+..++.. ...+.+++++|...+....+.    
T Consensus        70 -----------------~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~----  127 (210)
T 1pui_A           70 -----------------V-ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ----  127 (210)
T ss_dssp             -----------------E-ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH----
T ss_pred             -----------------e-cCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH----
Confidence                             0 12678999999854210    00111122223322 345888999998776543221    


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                       .....+...++|+++|.||+|+.+....+........+..                     +......++++||+++.|
T Consensus       128 -~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~Sal~~~~  185 (210)
T 1pui_A          128 -QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVL---------------------AFNGDVQVETFSSLKKQG  185 (210)
T ss_dssp             -HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---------------------GGCSCEEEEECBTTTTBS
T ss_pred             -HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHH---------------------hcCCCCceEEEeecCCCC
Confidence             1113344568999999999999886533221112221110                     111235789999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQEF  315 (324)
Q Consensus       301 v~~l~~~i~~~~~~~  315 (324)
                      ++++++.|.+.+.+.
T Consensus       186 ~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          186 VDKLRQKLDTWFSEM  200 (210)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999887654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=138.99  Aligned_cols=179  Identities=14%  Similarity=0.170  Sum_probs=92.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+|+|++..+.....+..     +++.....                        ....   
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~t~~~~~------------------------~~~~---   74 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK-----SITKKCEK------------------------RSSS---   74 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------CCSCEE------------------------EEEE---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCC-----ceeeeEEE------------------------EEEE---
Confidence            456889999999999999999999986643221100     00000000                        0000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                                      ..+..+.||||||+.+.... ......+.+.+..  ..+|++++|+|+.........+...+. 
T Consensus        75 ----------------~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~-  137 (239)
T 3lxx_A           75 ----------------WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKIL-  137 (239)
T ss_dssp             ----------------ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHH-
T ss_pred             ----------------eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHH-
Confidence                            22457899999998764211 1122234443332  246999999998643332222322121 


Q ss_pred             HHHH-hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc-----
Q 020549          224 CSIL-YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS-----  297 (324)
Q Consensus       224 ~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~-----  297 (324)
                       ..+ .....|+++|+||+|+.......+++.....                 .+..+++.+  +..++++++..     
T Consensus       138 -~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~-----------------~l~~l~~~~--~~~~~~~~~~~~~~~~  197 (239)
T 3lxx_A          138 -KMFGERARSFMILIFTRKDDLGDTNLHDYLREAPE-----------------DIQDLMDIF--GDRYCALNNKATGAEQ  197 (239)
T ss_dssp             -HHHHHHHGGGEEEEEECGGGC------------CH-----------------HHHHHHHHH--SSSEEECCTTCCHHHH
T ss_pred             -HHhhhhccceEEEEEeCCccCCcccHHHHHHhchH-----------------HHHHHHHHc--CCEEEEEECCCCcccc
Confidence             111 1245699999999999876544333221110                 000111122  24566666653     


Q ss_pred             CCChHHHHHHHHHHHHH
Q 020549          298 GAGIEAYFKAVEESAQE  314 (324)
Q Consensus       298 g~gv~~l~~~i~~~~~~  314 (324)
                      +.|+.+|+..|.+.+.+
T Consensus       198 ~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          198 EAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            37999999999988865

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.71  E-value=8.8e-17  Score=144.74  Aligned_cols=128  Identities=15%  Similarity=0.145  Sum_probs=75.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ..+++|||||||++|.  ...- ....++  ..++++|||+|....+... .+|...+..+.. ...++|+++|+||+|+
T Consensus        45 ~v~LqIWDTAGQErf~--~~~l-~~~~yy--r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL  118 (331)
T 3r7w_B           45 LIDLAVMELPGQLNYF--EPSY-DSERLF--KSVGALVYVIDSQDEYINAITNLAMIIEYAYK-VNPSINIEVLIHKVDG  118 (331)
T ss_dssp             SSCEEEEECCSCSSSC--CCSH-HHHHHH--TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCS
T ss_pred             EEEEEEEECCCchhcc--chhh-hhhhhc--cCCCEEEEEEECCchHHHHHHHHHHHHHHHhh-cCCCCcEEEEEECccc
Confidence            4789999999999972  1100 111223  2468999999988763332 345443432221 2357999999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      .+.+...+..+.+..-.         ...+++...    + .-+++++++||++ .||.++|..|.+.+.
T Consensus       119 ~~~~~R~~~~R~V~~~~---------~~~la~~~~----~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          119 LSEDFKVDAQRDIMQRT---------GEELLELGL----D-GVQVSFYLTSIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             SCSHHHHHHHHHHHHHH---------HHTTSSSSC----S-CCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred             CchhhhhhHHHHhhHHH---------HHHHHhhcc----c-ccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence            87653322222221000         011111000    0 0146899999998 589999999987653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.70  E-value=4.4e-17  Score=154.90  Aligned_cols=110  Identities=13%  Similarity=0.199  Sum_probs=66.4

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-----hhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-----MTFMSNMLYACSILYKTRLP-LVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-----~~~~~~~~~~~~~~~~~~~p-~ilv~  238 (324)
                      ...+.||||||+.+|..      .+...  ...+|++|+|+|+.++..+     ......   .+..+...++| +|+|+
T Consensus        84 ~~~~~iiDtPGh~~f~~------~~~~~--~~~aD~~ilVvda~~g~~~~sf~~~~qt~~---~~~~~~~~~v~~iivvi  152 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIK------NMITG--TSQADCAILIIAGGVGEFEAGISKDGQTRE---HALLAFTLGVRQLIVAV  152 (458)
T ss_dssp             SEEEEEEECCCCTTHHH------HHHHS--SSCCSEEEEEEECSHHHHHHHTCTTSHHHH---HHHHHHHTTCCEEEEEE
T ss_pred             CceEEEEECCCcHHHHH------HHHhh--hhhCCEEEEEEeCCcCccccccCcchhHHH---HHHHHHHcCCCeEEEEE
Confidence            56799999999877521      11111  2457999999999865322     111222   22334456776 89999


Q ss_pred             eccccCC--hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHHH
Q 020549          239 NKTDVAQ--HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       239 NK~Dl~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l  304 (324)
                      ||+|+.+  .+......+++..+.+.+                   .+. ...+++++||++|.|++++
T Consensus       153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~-------------------g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          153 NKMDSVKWDESRFQEIVKETSNFIKKV-------------------GYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             ECGGGGTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EccccccCCHHHHHHHHHHHHHHHHHc-------------------CCCccCceEEEeecccCcCcccc
Confidence            9999984  333333333333222211                   110 1378999999999999754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.70  E-value=2e-17  Score=157.62  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC-----chhHHHhHHHHHHHHhhcCCC-eEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-----PMTFMSNMLYACSILYKTRLP-LVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~-----~~~~~~~~~~~~~~~~~~~~p-~ilv~  238 (324)
                      +..+.||||||+++|..      .+...+  ..+|++|+|||+.++..     ....+...+   ..+...++| +|+|+
T Consensus       120 ~~~~~iiDtPGh~~f~~------~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l---~~~~~~~vp~iivvi  188 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVT------NMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHA---VLARTQGINHLVVVI  188 (467)
T ss_dssp             SEEEEECCCCC-----------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHH---HHHHHTTCSSEEEEE
T ss_pred             CeEEEEEECCCcHHHHH------HHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHH---HHHHHcCCCEEEEEE
Confidence            46789999999887621      111111  45799999999987641     112233223   344557888 89999


Q ss_pred             eccccCC----hHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          239 NKTDVAQ----HEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       239 NK~Dl~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ||+|+..    .+.......++..+.+.+             .+.   ......+++++||++|.|+++++
T Consensus       189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~-------------~g~---~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          189 NKMDEPSVQWSEERYKECVDKLSMFLRRV-------------AGY---NSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             ECTTSTTCSSCHHHHHHHHHHHHHHHHHH-------------HCC---CHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ECccCCCccccHHHHHHHHHHHHHHHHHh-------------cCC---CccCCceEEeccccccccccccc
Confidence            9999964    222222222332222110             000   00014689999999999998755

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.69  E-value=1.3e-16  Score=162.64  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      ...+.||||||+++|.      ..+...  ...+|++|+|||+.++...++.     ..+..+...++| +|+|+||+|+
T Consensus       358 ~~kI~IIDTPGHedF~------~~mi~g--as~AD~aILVVDAtdGv~~QTr-----EhL~ll~~lgIP~IIVVINKiDL  424 (1289)
T 3avx_A          358 TRHYAHVDCPGHADYV------KNMITG--AAQMDGAILVVAATDGPMPQTR-----EHILLGRQVGVPYIIVFLNKCDM  424 (1289)
T ss_dssp             SCEEEEEECCCHHHHH------HHHHHT--SCCCSEEEEEEETTTCSCTTHH-----HHHHHHHHHTCSCEEEEEECCTT
T ss_pred             CEEEEEEECCChHHHH------HHHHHH--HhhCCEEEEEEcCCccCcHHHH-----HHHHHHHHcCCCeEEEEEeeccc
Confidence            5789999999987751      111111  2457999999999998766542     112334456899 6899999999


Q ss_pred             CChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccC--------CChHHHHHHHHHHHH
Q 020549          244 AQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSG--------AGIEAYFKAVEESAQ  313 (324)
Q Consensus       244 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g--------~gv~~l~~~i~~~~~  313 (324)
                      .+... .....+++..+.+..                   .+ ....+++++||++|        .|+++|++.|.+.++
T Consensus       425 v~d~e~le~i~eEi~elLk~~-------------------G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          425 VDDEELLELVEMEVRELLSQY-------------------DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHT-------------------TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccchhhHHHHHHHHHHHHHhc-------------------cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            86332 222222333222111                   01 02368999999999        468999999888664

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.69  E-value=1.3e-16  Score=144.30  Aligned_cols=125  Identities=12%  Similarity=0.046  Sum_probs=73.4

Q ss_pred             CCCEEEEeCCCCcchhhh---hhhHHHHHHHHhc--cCCcEEEEEEcC-CCCCCchhHHHhHHHHHHHHhhcCCCeEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS--TFPTVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~~--~~~d~iv~vvD~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  238 (324)
                      ..++.||||||+.+....   ......+......  ..+|++++++|+ ...+...+.    ...+..+...+.|+++|+
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~----~~i~~~~~~~~~~~i~v~  205 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGVI  205 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEEE
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH----HHHHHHhCCCCCcEEEEE
Confidence            468999999998652100   0111112221111  346899999996 444432221    112244556789999999


Q ss_pred             eccccCChHh-HHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeecccc---CCChHHHHHHHHHHHH
Q 020549          239 NKTDVAQHEF-ALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVS---GAGIEAYFKAVEESAQ  313 (324)
Q Consensus       239 NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~---g~gv~~l~~~i~~~~~  313 (324)
                      ||+|+..... ..+.++..      +              .    .+ .++.+++++||.+   +.|+++++..+.+.++
T Consensus       206 NK~Dl~~~~~~~~~~~~~~------~--------------~----~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          206 TKLDLMDKGTDAMEVLTGR------V--------------I----PLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             ECTTSSCSSCCCHHHHTTS------S--------------S----CCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cCcccCCcchHHHHHHhCC------C--------------c----cCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            9999986543 11111100      0              0    00 2345677778887   8999999999999998


Q ss_pred             HHHH
Q 020549          314 EFME  317 (324)
Q Consensus       314 ~~~~  317 (324)
                      ..++
T Consensus       262 ~~~~  265 (315)
T 1jwy_B          262 NHPI  265 (315)
T ss_dssp             TCTT
T ss_pred             CCCc
Confidence            7654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.69  E-value=5.9e-16  Score=153.98  Aligned_cols=121  Identities=12%  Similarity=0.194  Sum_probs=73.7

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh--HHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      ..+.||||||+.+...   .......++  ..+|+++||+|+.......+  +|.      ..+...+.|+++|+||+|+
T Consensus       174 ~~l~LiDTPGl~~~~~---~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~~~l~------~~l~~~~~~iiiVlNK~Dl  242 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEA---RNELSLGYV--NNCHAILFVMRASQPCTLGERRYLE------NYIKGRGLTVFFLVNAWDQ  242 (695)
T ss_dssp             TTEEEEECCCHHHHHT---CHHHHTHHH--HSSSEEEEEEETTSTTCHHHHHHHH------HHTTTSCCCEEEEEECGGG
T ss_pred             CCeEEEECCCCCchhh---HHHHHHHHH--HhCCEEEEEEeCCCccchhHHHHHH------HHHHhhCCCEEEEEECccc
Confidence            5799999999866421   122222333  23799999999987765433  221      2234457899999999999


Q ss_pred             CChH--------hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-------ccCceeeeccc------------
Q 020549          244 AQHE--------FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-------KNLKSVGVSSV------------  296 (324)
Q Consensus       244 ~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~iv~vSA~------------  296 (324)
                      ....        ........+...             +...    +.++.       ...++++|||+            
T Consensus       243 ~~~~~~~~ee~e~l~~~~~~i~~~-------------~~~~----l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~  305 (695)
T 2j69_A          243 VRESLIDPDDVEELQASENRLRQV-------------FNAN----LAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA  305 (695)
T ss_dssp             GGGGCSSTTCHHHHHHHHHHHHHH-------------HHHH----HGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred             ccccccChhhHHHHHHHHHHHHHH-------------HHHH----HHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence            7543        111111111100             0000    00111       13479999999            


Q ss_pred             --cCCChHHHHHHHHHHHHH
Q 020549          297 --SGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       297 --~g~gv~~l~~~i~~~~~~  314 (324)
                        +|.|+++|+..|.+.+..
T Consensus       306 ~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          306 DLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHH
Confidence              999999999999987743

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.69  E-value=1.5e-16  Score=157.73  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++.+|+|+|++|+|||||+++|++..........+.+. ..+..+.      ...+        ..+.    ++.....
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g-~~~~d~~------~~e~--------~~gi----ti~~~~~   67 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG-TTTTDYT------PEAK--------LHRT----TVRTGVA   67 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT-CCSSCCS------HHHH--------HTTS----CCSCEEE
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC-cccccCC------HHHH--------hcCC----eEEecce
Confidence            456789999999999999999999765542211111000 0010000      0000        0000    0100000


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                      .+.             .....+.||||||+.+|.      ..+...++  .+|.+++|+|+..+...+..     ..+..
T Consensus        68 ~~~-------------~~~~~~nliDTpG~~~f~------~~~~~~l~--~ad~~ilVvD~~~g~~~qt~-----~~~~~  121 (665)
T 2dy1_A           68 PLL-------------FRGHRVFLLDAPGYGDFV------GEIRGALE--AADAALVAVSAEAGVQVGTE-----RAWTV  121 (665)
T ss_dssp             EEE-------------ETTEEEEEEECCCSGGGH------HHHHHHHH--HCSEEEEEEETTTCSCHHHH-----HHHHH
T ss_pred             EEe-------------eCCEEEEEEeCCCccchH------HHHHHHHh--hcCcEEEEEcCCcccchhHH-----HHHHH
Confidence            000             225678999999998762      12222222  36899999999888765542     12234


Q ss_pred             HhhcCCCeEEEeeccccC
Q 020549          227 LYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~  244 (324)
                      +...++|+|+|+||+|+.
T Consensus       122 ~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          122 AERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHTTCCEEEEEECGGGC
T ss_pred             HHHccCCEEEEecCCchh
Confidence            445689999999999997

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.68  E-value=3.4e-16  Score=150.93  Aligned_cols=70  Identities=19%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.+|..      .+.+.+  ..+|.+|+|+|+..+...+.     ...+..+...++|+++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDFSE------DTYRTL--TAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRD  147 (529)
T ss_dssp             TEEEEEECCCCSTTCCH------HHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSC
T ss_pred             CeEEEEEECCCChhHHH------HHHHHH--HHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCc
Confidence            56899999999987621      222222  34699999999998875443     122244555789999999999998


Q ss_pred             ChH
Q 020549          245 QHE  247 (324)
Q Consensus       245 ~~~  247 (324)
                      ...
T Consensus       148 ~~~  150 (529)
T 2h5e_A          148 IRD  150 (529)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.67  E-value=3.1e-16  Score=155.90  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.+|..      ...+.++  .+|.+|+|+|+..+...+..     ..+..+...++|+++|+||+|+.
T Consensus        76 ~~~i~liDTPG~~df~~------~~~~~l~--~aD~~ilVvDa~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD~~  142 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTI------EVERSMR--VLDGAIVVFDSSQGVEPQSE-----TVWRQAEKYKVPRIAFANKMDKT  142 (691)
T ss_dssp             TEEEEEECCCSSTTCHH------HHHHHHH--HCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEECTTST
T ss_pred             CeEEEEEECcCccchHH------HHHHHHH--HCCEEEEEEECCCCcchhhH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence            56899999999987621      2222222  36999999999988765542     11233445689999999999998


Q ss_pred             ChH
Q 020549          245 QHE  247 (324)
Q Consensus       245 ~~~  247 (324)
                      ..+
T Consensus       143 ~~~  145 (691)
T 1dar_A          143 GAD  145 (691)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.67  E-value=1.3e-16  Score=134.01  Aligned_cols=161  Identities=15%  Similarity=0.204  Sum_probs=93.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+|+|++|||||||+++|++..+.....++       .. ..+..                      +.+...   
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t-------~~-~~~~~----------------------~~i~~~---   74 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST-------IG-VEFAT----------------------RSIQVD---   74 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC-------CS-EEEEE----------------------EEEEET---
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-------cc-eEEEE----------------------EEEEEC---
Confidence            3578999999999999999999998765322111       00 00000                      000000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~  225 (324)
                                     +....+.+|||||+.++.  ...    ...+  ..++.+++|+|.....  .....|..   .+.
T Consensus        75 ---------------g~~~~~~i~Dt~g~~~~~--~~~----~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~  128 (191)
T 1oix_A           75 ---------------GKTIKAQIWDTAGLERYR--AIT----SAYY--RGAVGALLVYDIAKHLTYENVERWLK---ELR  128 (191)
T ss_dssp             ---------------TEEEEEEEEEECSCCSSS--CCC----HHHH--TTCCEEEEEEETTCHHHHHTHHHHHH---HHH
T ss_pred             ---------------CEEEEEEEEECCCCcchh--hhh----HHHh--hcCCEEEEEEECcCHHHHHHHHHHHH---HHH
Confidence                           113456789999987752  111    1112  2346788888875432  11122221   112


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|+++|+||+|+.+.....  ......+.                      . .....++++||+++.|+++++
T Consensus       129 ~~~~~~~~i~~v~nK~Dl~~~~~~~--~~~a~~l~----------------------~-~~~~~~ld~Sald~~~v~~l~  183 (191)
T 1oix_A          129 DHADSNIVIMLVGNKSDLRHLRAVP--TDEARAFA----------------------E-KNGLSFIETSALDSTNVEAAF  183 (191)
T ss_dssp             HHSCTTCEEEEEEECGGGGGGCCSC--HHHHHHHH----------------------H-HTTCEEEECCTTTCTTHHHHH
T ss_pred             HhcCCCCcEEEEEECcccccccccC--HHHHHHHH----------------------H-HcCCEEEEEeCCCCCCHHHHH
Confidence            2223468999999999996532110  00111111                      1 134678999999999999999


Q ss_pred             HHHHHHH
Q 020549          306 KAVEESA  312 (324)
Q Consensus       306 ~~i~~~~  312 (324)
                      +.|.+.+
T Consensus       184 ~~l~~~i  190 (191)
T 1oix_A          184 QTILTEI  190 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.2e-16  Score=145.36  Aligned_cols=225  Identities=14%  Similarity=0.175  Sum_probs=123.5

Q ss_pred             hhhhhhhhHhhhhhhhhhhhccccCCCCC---CC---ccccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc
Q 020549           32 KANDKEKEEITESMDKLHIEESSSGLAGS---SS---INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL  105 (324)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~  105 (324)
                      |.++.....++.++.+++.+.......+.   ..   .-....-..|+|+|.||||||||+|+|++...           
T Consensus        29 k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-----------   97 (376)
T 4a9a_A           29 KATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTES-----------   97 (376)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCC-----------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCC-----------
Confidence            34455567788888888776433111110   00   11123345799999999999999999998653           


Q ss_pred             CCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hh
Q 020549          106 DPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SA  184 (324)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~  184 (324)
                        .+.++|++|    ++              ++-|++.                   ..+.+++|+||||+.+.... ..
T Consensus        98 --~v~~~pftT----~~--------------~~~g~~~-------------------~~~~~i~l~D~pGl~~~a~~~~~  138 (376)
T 4a9a_A           98 --EAAEYEFTT----LV--------------TVPGVIR-------------------YKGAKIQMLDLPGIIDGAKDGRG  138 (376)
T ss_dssp             --CGGGTCSSC----CC--------------EEEEEEE-------------------ETTEEEEEEECGGGCCC-----C
T ss_pred             --cccCCCCce----ee--------------eeeEEEE-------------------eCCcEEEEEeCCCccCCchhhhH
Confidence              266777776    21              1223332                   23678999999998764211 11


Q ss_pred             hHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCC-------------hHhHHH
Q 020549          185 SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ-------------HEFALE  251 (324)
Q Consensus       185 ~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-------------~~~~~~  251 (324)
                      .+..+...+  ..+|++++|+|+.+.......+...+... ...-...|.++++||+|...             .+....
T Consensus       139 ~g~~~l~~i--~~ad~il~vvD~~~p~~~~~~i~~EL~~~-~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~  215 (376)
T 4a9a_A          139 RGKQVIAVA--RTCNLLFIILDVNKPLHHKQIIEKELEGV-GIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRA  215 (376)
T ss_dssp             HHHHHHHHH--HHCSEEEEEEETTSHHHHHHHHHHHHHHT-TEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHH
T ss_pred             HHHHHHHHH--HhcCccccccccCccHHHHHHHHHHHHHh-hHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHH
Confidence            233333333  23799999999976443333332222111 01123578899999999632             122211


Q ss_pred             HHHh---------------HHHHHHHHhcC-----c-----cchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          252 WMQD---------------FEVFQAAISSD-----H-----SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       252 ~~~~---------------~~~l~~~~~~~-----~-----~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      +...               ...+.......     +     .....+..   +.++.......++++|+..+.|++.|..
T Consensus       216 il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~---eele~l~~~~~~~~is~~~e~gLd~Li~  292 (376)
T 4a9a_A          216 VMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSI---EELELLYRIPNAVPISSGQDWNLDELLQ  292 (376)
T ss_dssp             HHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCH---HHHHHHTTSTTEEECCTTTCTTHHHHHH
T ss_pred             HHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCH---HHHHHHhcccchhhhhhhhcccchhHHH
Confidence            1111               01222222111     0     00111111   1122333445689999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .+.+.+
T Consensus       293 ~~y~~L  298 (376)
T 4a9a_A          293 VMWDRL  298 (376)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            988876

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=7.4e-18  Score=157.06  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=38.0

Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH-HH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK-AV  308 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~-~i  308 (324)
                      ..+|+++|+||+|+....    +...+..   .              .     . ..+.+++++||+.+.|+.+|++ .|
T Consensus       213 ~~kP~i~v~NK~D~~~~~----~l~~l~~---~--------------~-----~-~~~~~vv~iSA~~e~~l~~L~~~~l  265 (397)
T 1wxq_A          213 VNKPMVIAANKADAASDE----QIKRLVR---E--------------E-----E-KRGYIVIPTSAAAELTLRKAAKAGF  265 (397)
T ss_dssp             HHSCEEEEEECGGGSCHH----HHHHHHH---H--------------H-----H-HTTCEEEEECHHHHHHHHSCSSSCC
T ss_pred             cCCCEEEEEeCccccchH----HHHHHHH---H--------------H-----h-hcCCcEEEEeccchhhHHHHHhhhh
Confidence            359999999999988322    2222221   0              0     0 0146899999999999988766 55


Q ss_pred             HHHHHHHHHhhh
Q 020549          309 EESAQEFMETYK  320 (324)
Q Consensus       309 ~~~~~~~~~~~~  320 (324)
                      .++++.+++.|+
T Consensus       266 ~~~~p~~~~~~~  277 (397)
T 1wxq_A          266 IEYIPGASEFKV  277 (397)
T ss_dssp             CCSCC-------
T ss_pred             hhhcCCCccccc
Confidence            555555555443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.66  E-value=5.7e-16  Score=154.06  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.++..      ...+.++  .+|++|+|+|+..+...++.     ..+..+...++|+++|+||+|+.
T Consensus        74 ~~~i~liDTPG~~df~~------~~~~~l~--~aD~~llVvDa~~g~~~~~~-----~~~~~~~~~~~p~ilviNK~Dl~  140 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTV------EVERSLR--VLDGAVTVLDAQSGVEPQTE-----TVWRQATTYGVPRIVFVNKMDKL  140 (693)
T ss_dssp             TEEEEEECCCCCSSCCH------HHHHHHH--HCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCCEEEEEECTTST
T ss_pred             CeeEEEEECcCCcchHH------HHHHHHH--HCCEEEEEECCCCCCcHHHH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence            56899999999988622      2222222  26999999999988765542     11233455689999999999998


Q ss_pred             Ch
Q 020549          245 QH  246 (324)
Q Consensus       245 ~~  246 (324)
                      ..
T Consensus       141 ~~  142 (693)
T 2xex_A          141 GA  142 (693)
T ss_dssp             TC
T ss_pred             cc
Confidence            64

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.66  E-value=9e-16  Score=140.14  Aligned_cols=200  Identities=16%  Similarity=0.182  Sum_probs=108.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCC-Cccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-GGILTS  144 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~  144 (324)
                      ..++.+++|+|+||||||||+++|++...+.++.+.+.+.++...... ..-...+.++.  .+.....+... ...+|.
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~-~~~~~~~~~i~--~v~q~~~~~~~~~~~~~~  128 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG-GSILGDKTRMA--RLAIDRNAFIRPSPSSGT  128 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC-CCSSCCGGGST--TGGGCTTEEEECCCCCSS
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc-cchHHHhhhhe--eeccCcccccccCccccc
Confidence            356788999999999999999999998877778888888776432210 00000111100  00000000000 000010


Q ss_pred             ccccChHHHHHHHH-HHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          145 LNLFTTKFDEVISL-IERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       145 ~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                         +........+. ......+.+++|+||||+.+...      .+     ...+|++++++|+..+..... +...+  
T Consensus       129 ---l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------~v-----~~~~d~vl~v~d~~~~~~~~~-i~~~i--  191 (337)
T 2qm8_A          129 ---LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET------AV-----ADLTDFFLVLMLPGAGDELQG-IKKGI--  191 (337)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH------HH-----HTTSSEEEEEECSCC-------CCTTH--
T ss_pred             ---ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh------hH-----HhhCCEEEEEEcCCCcccHHH-HHHHH--
Confidence               00111111111 11224578999999999876411      11     145699999999854321100 00000  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChH-hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhc------cCceeeeccc
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHE-FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYK------NLKSVGVSSV  296 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~iv~vSA~  296 (324)
                            ..+|.++|+||+|+.... ......+.+..   .              +     ....      ..+++++||+
T Consensus       192 ------~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~---a--------------~-----~l~~~~~~~~~~~vl~~Sal  243 (337)
T 2qm8_A          192 ------FELADMIAVNKADDGDGERRASAAASEYRA---A--------------L-----HILTPPSATWTPPVVTISGL  243 (337)
T ss_dssp             ------HHHCSEEEEECCSTTCCHHHHHHHHHHHHH---H--------------H-----TTBCCSBTTBCCCEEEEBTT
T ss_pred             ------hccccEEEEEchhccCchhHHHHHHHHHHH---H--------------H-----HhccccccCCCCCEEEEeCC
Confidence                  124678899999986532 11112222210   0              0     0011      3578999999


Q ss_pred             cCCChHHHHHHHHHHHH
Q 020549          297 SGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       297 ~g~gv~~l~~~i~~~~~  313 (324)
                      +|.|+++|++.|.+...
T Consensus       244 ~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          244 HGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999998765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.66  E-value=1.7e-16  Score=156.47  Aligned_cols=135  Identities=13%  Similarity=0.212  Sum_probs=85.5

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +.+..+.|+||||+.+|..      .+.+.+  ..+|.+|+|||+.+|+..++.     ..++.+...++|.|+++||+|
T Consensus        64 ~~~~~iNlIDTPGH~DF~~------Ev~raL--~~~DgavlVVDa~~GV~~qT~-----~v~~~a~~~~lp~i~~INKmD  130 (638)
T 3j25_A           64 WENTKVNIIDTPGHMDFLA------EVYRSL--SVLDGAILLISAKDGVQAQTR-----ILFHALRKMGIPTIFFINKID  130 (638)
T ss_dssp             CSSCBCCCEECCCSSSTHH------HHHHHH--TTCSEEECCEESSCTTCSHHH-----HHHHHHHHHTCSCEECCEECC
T ss_pred             ECCEEEEEEECCCcHHHHH------HHHHHH--HHhCEEEEEEeCCCCCcHHHH-----HHHHHHHHcCCCeEEEEeccc
Confidence            4578899999999999832      333333  346999999999999998872     233566678999999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCc--------------------cchhhHHHHHHHhHHHH------------------
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDH--------------------SYTSTLTNSLSLALDEF------------------  284 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~~l~~~~~~~~~~~------------------  284 (324)
                      +...+..    ..+..+.+.+....                    .....+.+....+++.|                  
T Consensus       131 r~~a~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~  206 (638)
T 3j25_A          131 QNGIDLS----TVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR  206 (638)
T ss_dssp             SSSCCSH----HHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred             cccCCHH----HHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence            8765311    11111222221100                    00011111111111111                  


Q ss_pred             ---hccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          285 ---YKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       285 ---~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                         ....|+++.||+++.||+.|++.|.+.+|.
T Consensus       207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~  239 (638)
T 3j25_A          207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYS  239 (638)
T ss_dssp             HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCC
T ss_pred             hcccccccccccccccCCCchhHhhhhhccccC
Confidence               134689999999999999999999987764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.66  E-value=1.3e-15  Score=142.35  Aligned_cols=168  Identities=23%  Similarity=0.345  Sum_probs=99.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ...|+|+|++|||||||+++|++....             +..+++++                  +.++.|.+..    
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~-------------i~~~~ftT------------------l~p~~G~V~~----  201 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAHPK-------------IAPYPFTT------------------LSPNLGVVEV----  201 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCCE-------------ECCCTTCS------------------SCCEEEEEEC----
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCcc-------------ccCcccce------------------ecceeeEEEe----
Confidence            457999999999999999999887431             22223322                  0111122210    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                    .....+.+|||||+.+.... ..+.....+..  ..++.+++++|..  -.....+......+..+
T Consensus       202 --------------~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~--era~~lL~vvDls--~~~~~~ls~g~~el~~l  263 (416)
T 1udx_A          202 --------------SEEERFTLADIPGIIEGASEGKGLGLEFLRHI--ARTRVLLYVLDAA--DEPLKTLETLRKEVGAY  263 (416)
T ss_dssp             --------------SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH--TSSSEEEEEEETT--SCHHHHHHHHHHHHHHH
T ss_pred             --------------cCcceEEEEeccccccchhhhhhhhHHHHHHH--HHHHhhhEEeCCc--cCCHHHHHHHHHHHHHH
Confidence                          11256889999998653111 11222222222  3468999999986  22222222222211222


Q ss_pred             h--hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          228 Y--KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       228 ~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .  -...|.++|+||+|+....    ....+....+                       ....+++++||++++|+++|+
T Consensus       264 a~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~-----------------------~~g~~vi~iSA~~g~gi~eL~  316 (416)
T 1udx_A          264 DPALLRRPSLVALNKVDLLEEE----AVKALADALA-----------------------REGLAVLPVSALTGAGLPALK  316 (416)
T ss_dssp             CHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHH-----------------------TTTSCEEECCTTTCTTHHHHH
T ss_pred             hHHhhcCCEEEEEECCChhhHH----HHHHHHHHHH-----------------------hcCCeEEEEECCCccCHHHHH
Confidence            1  1468999999999998752    1222221100                       124689999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          306 KAVEESAQEFM  316 (324)
Q Consensus       306 ~~i~~~~~~~~  316 (324)
                      +.|.+.+.+.+
T Consensus       317 ~~i~~~l~~~~  327 (416)
T 1udx_A          317 EALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHHhcc
Confidence            99999987543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.65  E-value=1.6e-16  Score=157.50  Aligned_cols=126  Identities=12%  Similarity=0.001  Sum_probs=81.1

Q ss_pred             CCCEEEEeCCCCcchhh-------hhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549          165 HLDYVLVDTPGQIEIFT-------WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~-------~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  237 (324)
                      ..++.|+||||+.....       .......+.+++ ...+|++++|+|+...+...+.+    ..+..+...+.|+|+|
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi-~~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvIlV  223 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTIGV  223 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHH-TSTTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEEEE
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHH-hcCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEEEE
Confidence            46899999999876210       122333333333 35679999999999877665531    2234556678999999


Q ss_pred             eeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH---HHHH
Q 020549          238 FNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE---SAQE  314 (324)
Q Consensus       238 ~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~---~~~~  314 (324)
                      +||+|+++......   .+.   ..                .......++.+++++||++|.|+++|++.|.+   .+++
T Consensus       224 lNKiDlv~~~~~~~---~il---~~----------------~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe  281 (772)
T 3zvr_A          224 ITKLDLMDEGTDAR---DVL---EN----------------KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS  281 (772)
T ss_dssp             EECTTSSCTTCCSH---HHH---TT----------------CSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred             EeCcccCCcchhhH---HHH---HH----------------HhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence            99999987643210   010   00                00000023568999999999999999999987   3555


Q ss_pred             HHH
Q 020549          315 FME  317 (324)
Q Consensus       315 ~~~  317 (324)
                      .++
T Consensus       282 ~P~  284 (772)
T 3zvr_A          282 HPS  284 (772)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.65  E-value=1.9e-15  Score=150.41  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.||||||+.+|..      .+.+.+  ..+|.+|+|+|+..+...+..     ..+..+...++|+++|+||+|+.
T Consensus        81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~qt~-----~~~~~~~~~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTI------EVERSM--RVLDGAVMVYCAVGGVQPQSE-----TVWRQANKYKVPRIAFVNKMDRM  147 (704)
T ss_pred             ceeEEEEeCCCccchHH------HHHHHH--HHCCEEEEEEeCCCCCcHHHH-----HHHHHHHHcCCCEEEEEeCCCcc
Confidence            47899999999988621      222222  236999999999988755431     11234445689999999999997


Q ss_pred             Ch
Q 020549          245 QH  246 (324)
Q Consensus       245 ~~  246 (324)
                      ..
T Consensus       148 ~~  149 (704)
T 2rdo_7          148 GA  149 (704)
T ss_pred             cc
Confidence            64

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.9e-15  Score=126.48  Aligned_cols=132  Identities=20%  Similarity=0.283  Sum_probs=74.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+++|++|||||||+++|++..+..    .+....++.      + .+                           
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~----~~~~~~~~~------~-~~---------------------------   87 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLS------A-AD---------------------------   87 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------C---------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCc----ccccCCCce------e-ee---------------------------
Confidence            456789999999999999999999876532    110000000      0 00                           


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.||||||+.++.  ......+...+  ..+|++++|+|+.............+..+..
T Consensus        88 ----------------~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  147 (193)
T 2ged_A           88 ----------------YDGSGVTLVDFPGHVKLR--YKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILS  147 (193)
T ss_dssp             ----------------CCCTTCSEEEETTCCBSS--CCHHHHHHHHG--GGEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred             ----------------ecCCeEEEEECCCCchHH--HHHHHHHHhhc--ccCCEEEEEEECCCCchhHHHHHHHHHHHHh
Confidence                            125678899999988762  22222221111  2358999999987211111111111111111


Q ss_pred             H----hhcCCCeEEEeeccccCChHhHHHHHHhH
Q 020549          227 L----YKTRLPLVLAFNKTDVAQHEFALEWMQDF  256 (324)
Q Consensus       227 ~----~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~  256 (324)
                      .    ...+.|+++|+||+|+.......+..+.+
T Consensus       148 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          148 ITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             HHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             hhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            1    22479999999999998765444443333

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=2.3e-16  Score=145.52  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=45.6

Q ss_pred             cEEEEEEcC-CCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549          199 TVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL  277 (324)
Q Consensus       199 d~iv~vvD~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  277 (324)
                      ++++|+|++ ..++...+.  ..+   ..+ ..++|+|+|+||+|+.....+....+.+..+.                 
T Consensus       147 ~~~vy~I~~~~~~l~~~d~--~~~---~~l-~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-----------------  203 (361)
T 2qag_A          147 HCCFYFISPFGHGLKPLDV--AFM---KAI-HNKVNIVPVIAKADTLTLKERERLKKRILDEI-----------------  203 (361)
T ss_dssp             CEEEEEECSSSSSCCHHHH--HHH---HHT-CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-----------------
T ss_pred             EEEEEEEecCCCCcchhHH--HHH---HHh-ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----------------
Confidence            578999986 566655542  112   222 35799999999999998764433222222111                 


Q ss_pred             HHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                           . ..+++++++||++|.| ++.|..+.+.+.
T Consensus       204 -----~-~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          204 -----E-EHNIKIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             -----T-CC-CCSCCCC----------CHHHHHHHH
T ss_pred             -----H-HCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence                 0 1247899999999998 777777666654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.64  E-value=1.7e-15  Score=146.67  Aligned_cols=72  Identities=18%  Similarity=0.143  Sum_probs=55.7

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +.+..+.|+||||+.+|..      .+.+.+  ..+|.+|+|||+.+|++.++.     ..++.+...++|.|+++||+|
T Consensus        97 ~~~~~iNlIDTPGHvDF~~------Ev~raL--~~~DgAvlVvda~~GV~~qT~-----~v~~~a~~~~lp~i~fINK~D  163 (548)
T 3vqt_A           97 YRDRVVNLLDTPGHQDFSE------DTYRVL--TAVDSALVVIDAAKGVEAQTR-----KLMDVCRMRATPVMTFVNKMD  163 (548)
T ss_dssp             ETTEEEEEECCCCGGGCSH------HHHHHH--HSCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCCEEEEEECTT
T ss_pred             ECCEEEEEEeCCCcHHHHH------HHHHHH--HhcCceEEEeecCCCcccccH-----HHHHHHHHhCCceEEEEeccc
Confidence            4578899999999999832      333333  236999999999999998872     223566678999999999999


Q ss_pred             cCChH
Q 020549          243 VAQHE  247 (324)
Q Consensus       243 l~~~~  247 (324)
                      +...+
T Consensus       164 r~~ad  168 (548)
T 3vqt_A          164 REALH  168 (548)
T ss_dssp             SCCCC
T ss_pred             chhcc
Confidence            97654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.61  E-value=4.7e-15  Score=127.39  Aligned_cols=183  Identities=16%  Similarity=0.186  Sum_probs=98.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCC----CCCCcccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL----GPNGGILT  143 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~  143 (324)
                      +.++|+|+|++|||||||+++|+...+... .+.++..++..       .+   +..    .+...+.    ..+++.++
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~-~~~~i~~d~~~-------~~---d~~----~~~~~~~~~~~~~~~~~~~  101 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKY-KIACIAGDVIA-------KF---DAE----RMEKHGAKVVPLNTGKECH  101 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTC-CEEEEEEETTT-------HH---HHH----HHHTTTCEEEEEECTTCSS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCC-eEEEEECCCCC-------Cc---cHH----HHHhcCCcEEEecCCceEe
Confidence            467899999999999999999999877653 33333333321       00   000    0111000    00122221


Q ss_pred             cccccCh-HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH
Q 020549          144 SLNLFTT-KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY  222 (324)
Q Consensus       144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~  222 (324)
                          +.. ...+.+..+.  ....+++++|++|.....  ..        + ....+.++.++|+..+.......   . 
T Consensus       102 ----l~~~~~~~~~~~l~--~~~~d~~~id~~g~i~~~--~s--------~-~~~~~~~~~v~~~~~~~~~~~~~---~-  160 (226)
T 2hf9_A          102 ----LDAHLVGHALEDLN--LDEIDLLFIENVGNLICP--AD--------F-DLGTHKRIVVISTTEGDDTIEKH---P-  160 (226)
T ss_dssp             ----CCHHHHHHHHTTSC--GGGCSEEEEECCSCSSGG--GG--------C-CCSCSEEEEEEEGGGCTTTTTTC---H-
T ss_pred             ----ccHHHHHHHHHHHh--cCCCCEEEEeCCCCccCc--ch--------h-hhccCcEEEEEecCcchhhHhhh---h-
Confidence                111 1111111110  124589999999952210  00        0 11235667888864432221111   1 


Q ss_pred             HHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChH
Q 020549          223 ACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIE  302 (324)
Q Consensus       223 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~  302 (324)
                        .   ..+.|.++|+||+|+.+....  ..+.+....+                     .+....+++++||++|.|++
T Consensus       161 --~---~~~~~~iiv~NK~Dl~~~~~~--~~~~~~~~~~---------------------~~~~~~~~~~~Sa~~g~gv~  212 (226)
T 2hf9_A          161 --G---IMKTADLIVINKIDLADAVGA--DIKKMENDAK---------------------RINPDAEVVLLSLKTMEGFD  212 (226)
T ss_dssp             --H---HHTTCSEEEEECGGGHHHHTC--CHHHHHHHHH---------------------HHCTTSEEEECCTTTCTTHH
T ss_pred             --h---HhhcCCEEEEeccccCchhHH--HHHHHHHHHH---------------------HhCCCCeEEEEEecCCCCHH
Confidence              1   135899999999998643210  0111111100                     22235789999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          303 AYFKAVEESAQE  314 (324)
Q Consensus       303 ~l~~~i~~~~~~  314 (324)
                      ++|+.|.+.+..
T Consensus       213 ~l~~~l~~~~~~  224 (226)
T 2hf9_A          213 KVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.60  E-value=8.4e-15  Score=131.72  Aligned_cols=86  Identities=12%  Similarity=0.118  Sum_probs=46.7

Q ss_pred             cEEEEEEcCCC-CCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549          199 TVVTYVVDTPR-SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL  277 (324)
Q Consensus       199 d~iv~vvD~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  277 (324)
                      ++++|+++... ++.+.+.  ..   +..+. ...|+++|+||+|+..........+....+.+                
T Consensus       128 ~~ll~ldePt~~~Ld~~~~--~~---l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~----------------  185 (301)
T 2qnr_A          128 HCCFYFISPFGHGLKPLDV--AF---MKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIE----------------  185 (301)
T ss_dssp             CEEEEEECSSSSSCCHHHH--HH---HHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHH----------------
T ss_pred             hheeeeecCcccCCCHHHH--HH---HHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH----------------
Confidence            45677776543 5766551  22   23332 46799999999999986543222222222111                


Q ss_pred             HHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                           .  .+++++++||++| |++++|..+.+.+..
T Consensus       186 -----~--~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          186 -----E--HNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             -----H--TTCCCCCCC----------CHHHHHHHHT
T ss_pred             -----H--cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence                 1  2478999999999 999999999887753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.58  E-value=7.2e-15  Score=137.36  Aligned_cols=87  Identities=10%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             CcEEEEEEcCC-CCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHH
Q 020549          198 PTVVTYVVDTP-RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNS  276 (324)
Q Consensus       198 ~d~iv~vvD~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  276 (324)
                      +++++|++++. +++.+.+.  .++   ..+. .++|+|+|+||+|+.....+..+.+.+.....               
T Consensus       139 ~~vlL~ldePt~~~L~~~d~--~~l---k~L~-~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~---------------  197 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDI--EFM---KRLH-EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQ---------------  197 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHH--HHH---HHHT-TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHH---------------
T ss_pred             eeEEEEEecCcccCCCHHHH--HHH---HHHh-ccCcEEEEEEcccCccHHHHHHHHHHHHHHHH---------------
Confidence            45678877775 67776652  112   2333 37999999999999987654443333332211               


Q ss_pred             HHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          277 LSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       277 ~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                            .  .+++++.+||+++.++++++..|...+|
T Consensus       198 ------~--~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          198 ------E--HKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             ------H--HTCCCCCCC-----------------CC
T ss_pred             ------H--cCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence                  1  2578999999999999998888877654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.58  E-value=1.9e-15  Score=139.43  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=47.6

Q ss_pred             CCCEEEEeCCCCcchhhh---hhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEee
Q 020549          165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN  239 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N  239 (324)
                      ...+.||||||+.++...   ......+......  ..+|++++++|+.........|.   ..+..+...+.|+|+|+|
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~---~l~~~~~~~~~~~i~V~n  211 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI---KISREVDPSGDRTFGVLT  211 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH---HHHHHSCTTCTTEEEEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH---HHHHHhcccCCCEEEEEe
Confidence            468999999998875210   0111111111111  34688899998654322222332   223455566889999999


Q ss_pred             ccccCChH
Q 020549          240 KTDVAQHE  247 (324)
Q Consensus       240 K~Dl~~~~  247 (324)
                      |+|++...
T Consensus       212 K~Dl~~~~  219 (360)
T 3t34_A          212 KIDLMDKG  219 (360)
T ss_dssp             CGGGCCTT
T ss_pred             CCccCCCc
Confidence            99998754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.56  E-value=1.9e-14  Score=126.88  Aligned_cols=127  Identities=15%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.++|+++|.+|||||||+|+|++..+..            +..++.++... .                 .....    
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t~~~-~-----------------~~~~~----   80 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR------------VSPFQAEGLRP-V-----------------MVSRT----   80 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSC------------CCSSCC-CCCC-E-----------------EEEEE----
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCCcceee-E-----------------EEEEE----
Confidence            45889999999999999999999876432            12222211000 0                 00000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhh-hHHHHHHHHhccCCcEEEEEEcCCC-CCCchh-HHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPR-SANPMT-FMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~~~~d~iv~vvD~~~-~~~~~~-~~~~~~~~~  224 (324)
                                     ..+..+.||||||+.++..... ....+.+.+....+|+++||++... .+...+ .|...+   
T Consensus        81 ---------------~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l---  142 (262)
T 3def_A           81 ---------------MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAI---  142 (262)
T ss_dssp             ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHH---
T ss_pred             ---------------ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHH---
Confidence                           2255889999999988632211 1222333333334689999966543 233332 333222   


Q ss_pred             HHHhhc--CCCeEEEeeccccCCh
Q 020549          225 SILYKT--RLPLVLAFNKTDVAQH  246 (324)
Q Consensus       225 ~~~~~~--~~p~ilv~NK~Dl~~~  246 (324)
                      ......  ..|+++|+||+|+...
T Consensus       143 ~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          143 TQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHHhchhhhcCEEEEEeCcccCCC
Confidence            222222  2499999999999643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.53  E-value=6.6e-14  Score=123.93  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ..++|+++|.+|+|||||+|+|++..+..            +...+.++ .+..                  .....   
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~------------~~~~~~~t-~~~~------------------~~~~~---   83 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVS------------ISPFQSEG-PRPV------------------MVSRS---   83 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSSCCC-SSCE------------------EEEEE---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccc------------ccCCCCcc-eeeE------------------EEEEe---
Confidence            45789999999999999999999876532            11111111 0000                  00000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCC-CCCchh-HHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR-SANPMT-FMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~-~~~~~~-~~~~~~~~~  224 (324)
                                     ..+..+.||||||+.++.... .....+.+++....+|+++||+|... .+...+ .|   +..+
T Consensus        84 ---------------~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~---~~~l  145 (270)
T 1h65_A           84 ---------------RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLV---AKAI  145 (270)
T ss_dssp             ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHH---HHHH
T ss_pred             ---------------eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHH---HHHH
Confidence                           225579999999998762211 11112222222234689999976543 333322 23   2222


Q ss_pred             HHHhhc--CCCeEEEeeccccCChH
Q 020549          225 SILYKT--RLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       225 ~~~~~~--~~p~ilv~NK~Dl~~~~  247 (324)
                      ......  ..|+++|+||+|+...+
T Consensus       146 ~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          146 TDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHHhCcccccCEEEEEECcccCCcC
Confidence            222122  26999999999998654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.51  E-value=7.4e-14  Score=139.44  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.|+||||+.+|..      .+.+.++  .+|.+|+|||+.+|+..++..     .++.+...++|.|+|+||+|+.
T Consensus        84 ~~~iNlIDTPGHvDF~~------Ev~~aLr--~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTI------EVERSLR--VLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHH------HHHHHHH--HCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHH------HHHHHHH--HhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEcccccc
Confidence            45789999999999832      3333332  269999999999999988732     2355667899999999999997


Q ss_pred             ChH
Q 020549          245 QHE  247 (324)
Q Consensus       245 ~~~  247 (324)
                      ..+
T Consensus       151 ~a~  153 (709)
T 4fn5_A          151 GAN  153 (709)
T ss_dssp             TCC
T ss_pred             Ccc
Confidence            643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.46  E-value=5.4e-13  Score=129.24  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             CEEEEeCCCCcchhhhh-h----hHHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHHHHhhcCCCeEEEeec
Q 020549          167 DYVLVDTPGQIEIFTWS-A----SGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRLPLVLAFNK  240 (324)
Q Consensus       167 ~~~liDtpG~~~~~~~~-~----~~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK  240 (324)
                      ++.||||||+.+..... .    ........+  ..+|+++||+|+... .....     ...+..+...+.|+++|+||
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~-----~~~l~~l~~~~~pvilVlNK  227 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEF-----SEAIGALRGHEDKIRVVLNK  227 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHH-----HHHHHHTTTCGGGEEEEEEC
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHH-----HHHHHHHHhcCCCEEEEEEC
Confidence            58899999987621100 0    011111122  236999999999763 33322     11224455567899999999


Q ss_pred             cccCChHhHHHHHHhH
Q 020549          241 TDVAQHEFALEWMQDF  256 (324)
Q Consensus       241 ~Dl~~~~~~~~~~~~~  256 (324)
                      +|++..+...+....+
T Consensus       228 ~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          228 ADMVETQQLMRVYGAL  243 (550)
T ss_dssp             GGGSCHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHh
Confidence            9999876554444333

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.45  E-value=1.9e-12  Score=118.46  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +.+|+|+|.||||||||+|+|++..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~   26 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAG   26 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4689999999999999999999865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.42  E-value=2.3e-12  Score=120.08  Aligned_cols=180  Identities=12%  Similarity=0.043  Sum_probs=100.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+..++|+|++|||||||+|.|++...+..+.+.+.+.+..            +                 .+++...  
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------------~-----------------~~~v~q~--  116 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------------M-----------------ERHPYKH--  116 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------C-----------------CCEEEEC--
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------------e-----------------eEEeccc--
Confidence            45689999999999999999999976554433222111100            0                 0111110  


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.++|+||....  ..... .+...+.-...+..++ ++... ...++     +..+..+
T Consensus       117 ---------------~~~~~ltv~D~~g~~~~--~~~~~-~~L~~~~L~~~~~~~~-lS~G~-~~kqr-----v~la~aL  171 (413)
T 1tq4_A          117 ---------------PNIPNVVFWDLPGIGST--NFPPD-TYLEKMKFYEYDFFII-ISATR-FKKND-----IDIAKAI  171 (413)
T ss_dssp             ---------------SSCTTEEEEECCCGGGS--SCCHH-HHHHHTTGGGCSEEEE-EESSC-CCHHH-----HHHHHHH
T ss_pred             ---------------cccCCeeehHhhcccch--HHHHH-HHHHHcCCCccCCeEE-eCCCC-ccHHH-----HHHHHHH
Confidence                           11247899999997532  11122 2222221122244444 66643 22222     2233455


Q ss_pred             hhcCCCeEEEeeccccCChH---------hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeecc--
Q 020549          228 YKTRLPLVLAFNKTDVAQHE---------FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSS--  295 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA--  295 (324)
                      ...++|+++|+||.|++--+         ....+.+.+..+..             +.    +.+. .....+|++|+  
T Consensus       172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~-------------~~----l~~~g~~~~~iiliSsh~  234 (413)
T 1tq4_A          172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV-------------NT----FRENGIAEPPIFLLSNKN  234 (413)
T ss_dssp             HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH-------------HH----HHHTTCSSCCEEECCTTC
T ss_pred             HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH-------------HH----HHhcCCCCCcEEEEecCc
Confidence            66789999999999975211         11122222221110             00    0011 12357899999  


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHhhh
Q 020549          296 VSGAGIEAYFKAVEESAQEFMETYK  320 (324)
Q Consensus       296 ~~g~gv~~l~~~i~~~~~~~~~~~~  320 (324)
                      ..+.|+++|.+.|.+.++++++.|.
T Consensus       235 l~~~~~e~L~d~I~~~Lpeg~~~~~  259 (413)
T 1tq4_A          235 VCHYDFPVLMDKLISDLPIYKRHNF  259 (413)
T ss_dssp             TTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred             CCccCHHHHHHHHHHhCccchhhHH
Confidence            6677899999999999999888774

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.42  E-value=8.7e-13  Score=125.81  Aligned_cols=207  Identities=19%  Similarity=0.205  Sum_probs=106.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+|+|++||||||++++|+......+..+.++..|+.....        .+.  ........++...... ...+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa--------~~q--L~~~~~~~~i~v~~~~-~~~d  167 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA--------FDQ--LKQNATKARIPFYGSY-TEMD  167 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH--------HHH--HHHHHHHHTCCEEECC-CCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH--------HHH--HHHHhhccCceEEccC-CCCC
Confidence            4567899999999999999999997655556677776665422100        000  0011111122110000 0000


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                       ...-....+..+  ...+.+++||||||....  .......+........+|.+++|+|+..+......       +..
T Consensus       168 -p~~i~~~al~~~--~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-------a~~  235 (504)
T 2j37_W          168 -PVIIASEGVEKF--KNENFEIIIVDTSGRHKQ--EDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-------AKA  235 (504)
T ss_dssp             -HHHHHHHHHHHH--HHTTCCEEEEEECCCCTT--CHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-------HHH
T ss_pred             -HHHHHHHHHHHH--HHCCCcEEEEeCCCCccc--chhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-------HHH
Confidence             000001111112  235789999999997642  11122222222222357999999999887542211       122


Q ss_pred             HhhcCCCe-EEEeeccccCChHhHHHHHHhHHHHHHHHhcCc---cchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549          227 LYKTRLPL-VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH---SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I  301 (324)
Q Consensus       227 ~~~~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v  301 (324)
                      +.. .+|+ ++|+||+|.......  ... .   ...+...-   +....+        ..+.++.+++++||+.|.| +
T Consensus       236 ~~~-~~~i~gvVlNK~D~~~~~g~--~l~-~---~~~~g~PI~fig~ge~~--------~dl~~f~~~~~vsal~G~Gdi  300 (504)
T 2j37_W          236 FKD-KVDVASVIVTKLDGHAKGGG--ALS-A---VAATKSPIIFIGTGEHI--------DDFEPFKTQPFISKLLGMGDI  300 (504)
T ss_dssp             HHH-HHCCCCEEEECTTSCCCCTH--HHH-H---HHHHCCCEEEEECSSST--------TCEECCTHHHHHHCCCTTTTT
T ss_pred             HHh-hcCceEEEEeCCccccchHH--HHH-H---HHHhCCCeEEeccccch--------hhhhccCcceeeehhcCCCcH
Confidence            222 2675 899999998754211  111 1   11110000   000000        0122345677899999999 9


Q ss_pred             HHHHHHHHHH
Q 020549          302 EAYFKAVEES  311 (324)
Q Consensus       302 ~~l~~~i~~~  311 (324)
                      +.|++.+.+.
T Consensus       301 ~~Lie~i~e~  310 (504)
T 2j37_W          301 EGLIDKVNEL  310 (504)
T ss_dssp             TTTHHHHTTT
T ss_pred             HHHHHHHHHH
Confidence            9999999866

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.40  E-value=3.3e-12  Score=117.44  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+|+|+|.||||||||+|+|++..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            469999999999999999999874

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.37  E-value=9e-13  Score=133.67  Aligned_cols=67  Identities=25%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.||||||+.+|..      .....+  ..+|.+|+|+|+.++...++.     ..+..+...++|+|+|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~ailVvDa~~g~~~qt~-----~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSS------EVTAAL--RVTDGALVVVDTIEGVCVQTE-----TVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCH------HHHHHH--HTCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCeEEEEECCCcc
Confidence            46789999999988732      222223  346999999999998776652     11233345689999999999987

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.30  E-value=7.6e-11  Score=110.33  Aligned_cols=154  Identities=19%  Similarity=0.200  Sum_probs=86.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++..|+++|++|+||||++..|+......+..+.++..|+....          ....+..+.+..++..     .....
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a----------a~eqL~~~~~~~gvpv-----~~~~~  163 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG----------AYHQLRQLLDRYHIEV-----FGNPQ  163 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH----------HHHHHHHHHGGGTCEE-----ECCTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh----------HHHHHHHHHHhcCCcE-----EecCC
Confidence            57889999999999999999999887777778888766653210          0011111111222110     00000


Q ss_pred             cChH---HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          148 FTTK---FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~---~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      ....   ....+..+  ...+++++|+||||....  .......+........+|.+++|+|+..+.....       .+
T Consensus       164 ~~dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~-------~a  232 (443)
T 3dm5_A          164 EKDAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKE--DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN-------QA  232 (443)
T ss_dssp             CCCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH-------HH
T ss_pred             CCCHHHHHHHHHHHH--HhCCCCEEEEECCCcccc--hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH-------HH
Confidence            0000   11112222  234689999999996442  1223333433333345789999999987532221       12


Q ss_pred             HHHhhcCCCeEEEeeccccCChH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~  247 (324)
                      ..+...-.+..+|+||+|.....
T Consensus       233 ~~f~~~~~i~gVIlTKlD~~~~g  255 (443)
T 3dm5_A          233 LAFKEATPIGSIIVTKLDGSAKG  255 (443)
T ss_dssp             HHHHHSCTTEEEEEECCSSCSSH
T ss_pred             HHHHhhCCCeEEEEECCCCcccc
Confidence            33333334557999999987643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.27  E-value=3.5e-11  Score=110.55  Aligned_cols=138  Identities=14%  Similarity=0.184  Sum_probs=65.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC----c--hhHHHhHHHHHHHHh----hcCCCe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN----P--MTFMSNMLYACSILY----KTRLPL  234 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~----~--~~~~~~~~~~~~~~~----~~~~p~  234 (324)
                      ...+.+|||+||+++..  ...    .++  ..++.+|||+|.++.-+    +  ...+.+.......+.    ..+.|+
T Consensus       200 ~~~l~i~Dt~Gq~~~r~--~w~----~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERK--RWF----ECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             TEEEEEEEECC---------CT----TSC--TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             CeEEEEEeccchhhhhh--hHH----HHh--CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            35678999999977521  110    011  23589999999876311    0  111111111112222    247899


Q ss_pred             EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--------hccCceeeeccccCCChHHHHH
Q 020549          235 VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--------YKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       235 ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      |||+||+|+.......   ..+.   ..+..-.+......+........|        .....+++|||++|.||+++|.
T Consensus       272 ILv~NK~DL~~~ki~~---~~l~---~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~  345 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQV---VSIK---DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR  345 (362)
T ss_dssp             EEEEECHHHHHHHTTT---CCGG---GTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccc---cchh---hcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence            9999999986321000   0000   000000000000000000000000        1235788999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          307 AVEESAQEFM  316 (324)
Q Consensus       307 ~i~~~~~~~~  316 (324)
                      .+.+.+....
T Consensus       346 ~v~~~i~~~~  355 (362)
T 1zcb_A          346 DVKDTILHDN  355 (362)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998876544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.22  E-value=2e-10  Score=107.43  Aligned_cols=157  Identities=19%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+++|++||||||++..|.......++.+.++..|+...          ........+.+..++.......    
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~----------~a~eqL~~~~~~~gv~~~~~~~----  160 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP----------AAYDQLLQLGNQIGVQVYGEPN----  160 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH----------HHHHHHHHHHHTTTCCEECCTT----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch----------hHHHHHHHHHHhcCCceeeccc----
Confidence            35778999999999999999999988777778888776664211          1111111222222321111000    


Q ss_pred             ccChHHHHHHH--HHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTKFDEVIS--LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                       .. .......  .......+++++|+||||...+.........+....+...++.+++|+|+..+.....       .+
T Consensus       161 -~~-dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~-------~a  231 (433)
T 3kl4_A          161 -NQ-NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD-------LA  231 (433)
T ss_dssp             -CS-CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH-------HH
T ss_pred             -cC-CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH-------HH
Confidence             00 0111111  1111234789999999995441012223334444444445789999999987533222       12


Q ss_pred             HHHhhcCCCeEEEeeccccCCh
Q 020549          225 SILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ..+...-.+..+|+||+|....
T Consensus       232 ~~f~~~~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          232 SRFHQASPIGSVIITKMDGTAK  253 (433)
T ss_dssp             HHHHHHCSSEEEEEECGGGCSC
T ss_pred             HHHhcccCCcEEEEeccccccc
Confidence            3333333567899999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.20  E-value=2.1e-10  Score=101.23  Aligned_cols=143  Identities=21%  Similarity=0.274  Sum_probs=75.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +.++|+|++|||||||+|.|++...+..+.+.+.+.+...     +..   +..               -+.+...    
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-----~~~---~~~---------------i~~v~q~----   55 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-----TVE---IKA---------------IGHVIEE----   55 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCC-----CCS---CCE---------------EEESCC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-----cee---eee---------------eEEEeec----
Confidence            5799999999999999999999887766555443332210     000   000               0111110    


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHH----HHHhc------------cCCcEEEEEEcCC-
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIIT----EAFAS------------TFPTVVTYVVDTP-  208 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~----~~~~~------------~~~d~iv~vvD~~-  208 (324)
                                  ..-...+.++|++|......    +......+.    +....            +.+.+.++++|.. 
T Consensus        56 ------------~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~  123 (270)
T 3sop_A           56 ------------GGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG  123 (270)
T ss_dssp             ---------------CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS
T ss_pred             ------------CCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC
Confidence                        01134678999999754311    111111111    11111            1247788999966 


Q ss_pred             CCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH
Q 020549          209 RSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (324)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~  257 (324)
                      +++.+.+     ...+..+... .++|+|+||+|....++.......+.
T Consensus       124 ~gL~~lD-----~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~  166 (270)
T 3sop_A          124 HSLRPLD-----LEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVR  166 (270)
T ss_dssp             SSCCHHH-----HHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             CcCCHHH-----HHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHH
Confidence            6776665     2223445555 89999999999999876655555444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.17  E-value=3.9e-11  Score=112.71  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=105.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+..|+++|++|+||||+++.|.......++.+.++..|+.....     ++   .  +..+....++..........+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-----~~---q--L~~~~~~~gv~v~~~~~~~~dp  167 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-----YE---Q--LKQLAEKIHVPIYGDETRTKSP  167 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-----GG---S--SHHHHHHSSCCEECCSSSCCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-----HH---H--HHHhhhccCcceEecCCCCCCH
Confidence            356799999999999999999998876667788887777532111     00   0  0111122222111000000000


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      . .-....+   .. ..+.+++|+||||....  .......+........+|.++||+|+..+.   +.+    ..+..+
T Consensus       168 ~-~i~~~~l---~~-~~~~D~vIIDT~G~~~~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~----~~~~~~  233 (432)
T 2v3c_C          168 V-DIVKEGM---EK-FKKADVLIIDTAGRHKE--EKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAG----IQAKAF  233 (432)
T ss_dssp             S-TTHHHHH---HT-TSSCSEEEEECCCSCSS--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHH----HHHHHH
T ss_pred             H-HHHHHHH---HH-hhCCCEEEEcCCCCccc--cHHHHHHHHHHHHHhcCcceeEEeeccccH---HHH----HHHHHH
Confidence            0 0001111   11 25789999999997542  111222222211123579999999997664   211    112222


Q ss_pred             hhcCC-C-eEEEeeccccCChHhHHHHHHhHHHHHHHHhcCc---cchhhHHHHHHHhHHHHhccCceeeeccccCCC-h
Q 020549          228 YKTRL-P-LVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDH---SYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG-I  301 (324)
Q Consensus       228 ~~~~~-p-~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g-v  301 (324)
                      . ..+ | ..+|+||+|.......  ...    +...+...-   +.+..+        ....++.+..++||..|.| +
T Consensus       234 ~-~~~~~i~gvVlnK~D~~~~~g~--~l~----~~~~~~~pi~~ig~Ge~~--------~dl~~f~~~~~~s~l~g~gdi  298 (432)
T 2v3c_C          234 K-EAVGEIGSIIVTKLDGSAKGGG--ALS----AVAETKAPIKFIGIGEGI--------DDLEPFDPKKFISRLLGMGDL  298 (432)
T ss_dssp             H-TTSCSCEEEEEECSSSCSTTHH--HHH----HHHHSSCCEEEECCSSSS--------SSCCBCCHHHHHHHHTCSSCS
T ss_pred             h-hcccCCeEEEEeCCCCccchHH--HHH----HHHHHCCCEEEeecCccc--------cccccCCHHHHHHHHcCCCcH
Confidence            2 235 6 7899999998653211  111    111110000   000000        0112345667789999998 8


Q ss_pred             HHHHHHHHHHH
Q 020549          302 EAYFKAVEESA  312 (324)
Q Consensus       302 ~~l~~~i~~~~  312 (324)
                      ..|++.+.+.+
T Consensus       299 ~~L~e~~~~~~  309 (432)
T 2v3c_C          299 ESLLEKAEDMV  309 (432)
T ss_dssp             STTSSTTTSCS
T ss_pred             HHHHHHHHHHH
Confidence            77777765443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.15  E-value=3.3e-12  Score=117.84  Aligned_cols=132  Identities=15%  Similarity=0.101  Sum_probs=74.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...|+++|.+|+|||||+|+|++..... ...       ..+...|++|.    ..                 ...    
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-------~~~~~~~gtT~----~~-----------------~~~----  207 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENV-------ITTSHFPGTTL----DL-----------------IDI----  207 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC-------CEEECCC--------CE-----------------EEE----
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccc-------eecCCCCCeec----ce-----------------EEE----
Confidence            4579999999999999999999874221 000       11344444441    00                 000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh--hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIF--TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                     .-...+.++||||+.+..  ........+...+.....+.++|++++........     +..+.
T Consensus       208 ---------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~-----l~~~d  267 (368)
T 3h2y_A          208 ---------------PLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSG-----LARFD  267 (368)
T ss_dssp             ---------------ESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETT-----TEEEE
T ss_pred             ---------------EecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcc-----eEEEE
Confidence                           002348899999987652  11112223333333455688999999843321111     00012


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEW  252 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~  252 (324)
                      .+...+.|+++|+||+|.++.......
T Consensus       268 ~l~~~~~~~~~v~nk~d~~~~~~~~~~  294 (368)
T 3h2y_A          268 YVSGGRRAFTCHFSNRLTIHRTKLEKA  294 (368)
T ss_dssp             EEESSSEEEEEEECTTSCEEEEEHHHH
T ss_pred             EecCCCceEEEEecCccccccccHHHH
Confidence            233457899999999999887654333

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.15  E-value=1.4e-09  Score=98.50  Aligned_cols=154  Identities=20%  Similarity=0.214  Sum_probs=85.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..++++|++|||||||++.|.+...+.++.+.+.+.|.....          .......+.+..++.    ++....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~----------a~eql~~~~~~~gv~----~v~q~~  192 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG----------AIEQLEEHAKRIGVK----VIKHSY  192 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT----------HHHHHHHHHHHTTCE----EECCCT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc----------hHHHHHHHHHHcCce----EEeccc
Confidence            567899999999999999999999998888888888776643210          000111112222211    111100


Q ss_pred             ccChH--HHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          147 LFTTK--FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       147 ~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      .+...  ..+.+...  ...+.+++++||+|....  .......+....+...+|-.++++|+..+.   +.    +..+
T Consensus       193 ~~~p~~~v~e~l~~~--~~~~~d~vliDtaG~~~~--~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~----~~~~  261 (328)
T 3e70_C          193 GADPAAVAYDAIQHA--KARGIDVVLIDTAGRSET--NRNLMDEMKKIARVTKPNLVIFVGDALAGN---AI----VEQA  261 (328)
T ss_dssp             TCCHHHHHHHHHHHH--HHHTCSEEEEEECCSCCT--TTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HH----HHHH
T ss_pred             cCCHHHHHHHHHHHH--HhccchhhHHhhccchhH--HHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HH----HHHH
Confidence            11111  11112222  233678999999997553  222233333333334468899999986653   21    2222


Q ss_pred             HHHhhcCCCeEEEeeccccCC
Q 020549          225 SILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ..+...--..++++||+|...
T Consensus       262 ~~~~~~~~it~iilTKlD~~a  282 (328)
T 3e70_C          262 RQFNEAVKIDGIILTKLDADA  282 (328)
T ss_dssp             HHHHHHSCCCEEEEECGGGCS
T ss_pred             HHHHHhcCCCEEEEeCcCCcc
Confidence            333322233488999999743

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.15  E-value=2e-12  Score=119.41  Aligned_cols=129  Identities=16%  Similarity=0.092  Sum_probs=73.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ...|+++|.+|+|||||+|+|++........       ..+...|++|.    ...                 ..     
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~-------~~~~~~~gtT~----~~~-----------------~~-----  208 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNV-------ITTSYFPGTTL----DMI-----------------EI-----  208 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------CEEEECTTSSC----EEE-----------------EE-----
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccc-------eeecCCCCeEE----eeE-----------------EE-----
Confidence            4569999999999999999999872111100       11334444431    100                 00     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchh--hhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIF--TWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                    .-...+.++||||+....  ........+...+.....+.++|++++..+.....     +..+..
T Consensus       209 --------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~-----l~~l~~  269 (369)
T 3ec1_A          209 --------------PLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGG-----LARLDY  269 (369)
T ss_dssp             --------------ECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETT-----TEEEEE
T ss_pred             --------------EeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECC-----EEEEEE
Confidence                          012358899999987542  11111223333333455689999999843311111     000122


Q ss_pred             HhhcCCCeEEEeeccccCChHhH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFA  249 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~  249 (324)
                      +...+.|+++++||+|.++....
T Consensus       270 l~~~~~~~~~v~~k~d~~~~~~~  292 (369)
T 3ec1_A          270 IKGGRRSFVCYMANELTVHRTKL  292 (369)
T ss_dssp             EESSSEEEEEEECTTSCEEEEEG
T ss_pred             ccCCCceEEEEecCCcccccccH
Confidence            33457899999999999876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.14  E-value=1.4e-09  Score=98.65  Aligned_cols=28  Identities=11%  Similarity=0.192  Sum_probs=25.1

Q ss_pred             cCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          287 NLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       287 ~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      .+.++++||+++.||+.+|..+.+.+..
T Consensus       301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          301 KVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999998876

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.13  E-value=2.5e-10  Score=105.57  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++.+|+|+|+||||||||+|+|++...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~   45 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVL   45 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            4578899999999999999999999754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.11  E-value=7.7e-11  Score=108.86  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.+|+|+|.||||||||+|+|++..+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~   47 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA   47 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            4567899999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.08  E-value=4.6e-10  Score=104.61  Aligned_cols=52  Identities=12%  Similarity=0.192  Sum_probs=34.2

Q ss_pred             EEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHH
Q 020549          200 VVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFE  257 (324)
Q Consensus       200 ~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~  257 (324)
                      +++|++|+.+++...+     +..+..+. .+.|+|+|+||+|.+.+.+...+...+.
T Consensus       151 ~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~  202 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKIT  202 (427)
T ss_dssp             EEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHH
Confidence            5777888888777665     22334443 6789999999999998876555544443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.07  E-value=2.8e-09  Score=95.28  Aligned_cols=155  Identities=17%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +..++++|++|+||||++..|.......++.+.+++.|+.....          ......+.+..++..-.+...   .-
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a----------~~ql~~~~~~~~v~v~~~~~~---~~  164 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA----------LEQLQQLGQQIGVPVYGEPGE---KD  164 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH----------HHHHHHHHHHHTCCEECCTTC---CC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH----------HHHHHHHhccCCeEEEecCCC---CC
Confidence            77899999999999999999998877667778777666532110          001111222233221000000   00


Q ss_pred             ChHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          149 TTKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      ...+ .+.+..+.  ..+++++|+||||.............+........+|.+++|+|+..+   .+.    +..+..+
T Consensus       165 p~~~~~~~l~~~~--~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~----~~~~~~~  235 (297)
T 1j8m_F          165 VVGIAKRGVEKFL--SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKA----YDLASKF  235 (297)
T ss_dssp             HHHHHHHHHHHHH--HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGH----HHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHH----HHHHHHH
Confidence            0011 11222221  257899999999976510011122222222222357899999998643   221    1122223


Q ss_pred             hhcCCC-eEEEeeccccCCh
Q 020549          228 YKTRLP-LVLAFNKTDVAQH  246 (324)
Q Consensus       228 ~~~~~p-~ilv~NK~Dl~~~  246 (324)
                      .. ..| ..+|+||+|....
T Consensus       236 ~~-~~~i~gvVlnk~D~~~~  254 (297)
T 1j8m_F          236 NQ-ASKIGTIIITKMDGTAK  254 (297)
T ss_dssp             HH-TCTTEEEEEECGGGCTT
T ss_pred             Hh-hCCCCEEEEeCCCCCcc
Confidence            32 466 6789999997643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.90  E-value=2.1e-08  Score=91.53  Aligned_cols=108  Identities=16%  Similarity=0.186  Sum_probs=76.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--cc-------c---ccc----cccchh--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--MT-------L---PFA----ANIDIR--------  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--~~-------~---~~~----~~~~~~--------  121 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+...  ..       +   ...    +...+.        
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~  106 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG  106 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTST
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence            35678899999999999999999999988877777665544310  00       0   000    000000        


Q ss_pred             --------cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 --------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                              ...++.++++.+++.......  ...+|.|++|++.++++...+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRValArAL~~~P~lLLLDEPt  166 (359)
T 3fvq_A          107 NGKGRTAQERQRIEAMLELTGISELAGRY--PHELSGGQQQRAALARALAPDPELILLDEPF  166 (359)
T ss_dssp             TSSCCSHHHHHHHHHHHHHHTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HcCCChHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                    123567889999987543332  3469999999999999999999999999884

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.89  E-value=7.5e-09  Score=92.77  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             CEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc---hhHHHhHHHHHHHHhhcCCCeEEEeecccc
Q 020549          167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP---MTFMSNMLYACSILYKTRLPLVLAFNKTDV  243 (324)
Q Consensus       167 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl  243 (324)
                      .+.+|||  ++++..   +..   .  .-..+|++++|+|+......   .+.|..      .+...++|+++|+||+|+
T Consensus        64 ~~~iwD~--qer~~~---l~~---~--~~~~ad~vilV~D~~~~~~s~~~l~~~l~------~~~~~~~piilv~NK~DL  127 (301)
T 1u0l_A           64 SGVIENV--LHRKNL---LTK---P--HVANVDQVILVVTVKMPETSTYIIDKFLV------LAEKNELETVMVINKMDL  127 (301)
T ss_dssp             SEEEEEE--CCCSCE---ETT---T--TEESCCEEEEEECSSTTCCCHHHHHHHHH------HHHHTTCEEEEEECCGGG
T ss_pred             eEEEEEE--ccccce---eec---c--ccccCCEEEEEEeCCCCCCCHHHHHHHHH------HHHHCCCCEEEEEeHHHc
Confidence            7899999  666521   110   0  12447999999998764321   223322      223368999999999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhcc-CceeeeccccCCChHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKN-LKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .+....    ++...+.+                      .+.. .+++++||++|.||+++|..+.
T Consensus       128 ~~~~~v----~~~~~~~~----------------------~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          128 YDEDDL----RKVRELEE----------------------IYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             CCHHHH----HHHHHHHH----------------------HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             CCchhH----HHHHHHHH----------------------HHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            876432    11111111                      1111 6899999999999999998765

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.89  E-value=2.2e-08  Score=91.49  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=77.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-------------ccccccc----chhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------LPFAANI----DIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~~----~~~~------  122 (324)
                      ..++..++|+|++|||||||++.|.+...+..+.+.+.+.+.....             .+....+    .+.+      
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~  130 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL  130 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHH
Confidence            4577889999999999999999999998887777777665432110             0000000    0111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ..++.++++.+++.......  ...+|.|++|++.++++...+++++|+|.|-
T Consensus       131 ~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT  191 (366)
T 3tui_C          131 ELDNTPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALASNPKVLLCDQAT  191 (366)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence                      12456788899987643322  3469999999999999999999999999885

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.88  E-value=3.3e-08  Score=88.61  Aligned_cols=153  Identities=16%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+++|++|+||||++..|.+.....++.+.+++.|....          ...-.+..+.+..++..    ...  
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~----------~a~eqL~~~~~~~gl~~----~~~--  165 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA----------AAIEQLKIWGERVGATV----ISH--  165 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH----------HHHHHHHHHHHHHTCEE----ECC--
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH----------HHHHHHHHHHHHcCCcE----Eec--
Confidence            45678999999999999999999988776677777766654211          00111223344444321    111  


Q ss_pred             ccChHHHHHH---HHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHH---HHhc---cCCcEEEEEEcCCCCCCchhHH
Q 020549          147 LFTTKFDEVI---SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE---AFAS---TFPTVVTYVVDTPRSANPMTFM  217 (324)
Q Consensus       147 ~~~~~~~~~~---~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~---~~~~---~~~d~iv~vvD~~~~~~~~~~~  217 (324)
                       .+.+..+.+   ....+...+++++|+||||....  .......+..   .+..   ..++.+++|+|+..+   ...+
T Consensus       166 -~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~--~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l  239 (306)
T 1vma_A          166 -SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGL  239 (306)
T ss_dssp             -STTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHH
T ss_pred             -CCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh--HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHH
Confidence             111222222   23334456899999999995332  1222222222   2211   236888999998632   1211


Q ss_pred             HhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          218 SNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       218 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                          ..+..+...-...-+|+||+|-..
T Consensus       240 ----~~a~~~~~~~~i~gvVlTk~D~~~  263 (306)
T 1vma_A          240 ----VQAKIFKEAVNVTGIILTKLDGTA  263 (306)
T ss_dssp             ----HHHHHHHHHSCCCEEEEECGGGCS
T ss_pred             ----HHHHHHHhcCCCCEEEEeCCCCcc
Confidence                111222222223467889999754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.88  E-value=9.3e-09  Score=97.18  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=80.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..++.+|+|+|++|||||||++.|.+.....++.+.+.+.|.....    .    ....  ..+....++    +++...
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a----a----~eQL--~~~~~r~~I----~vV~Q~  355 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA----A----VEQL--QVWGQRNNI----PVIAQH  355 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH----H----HHHH--HHHHHHHTC----CEECCS
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh----h----HHHH--HHHHHhcCc----eEEecc
Confidence            4567889999999999999999999987777777777655432100    0    0000  001001111    222211


Q ss_pred             cccC--hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHH---HHHHhc---cCCcEEEEEEcCCCCCCchhHH
Q 020549          146 NLFT--TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFAS---TFPTVVTYVVDTPRSANPMTFM  217 (324)
Q Consensus       146 ~~~~--~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~---~~~~~~---~~~d~iv~vvD~~~~~~~~~~~  217 (324)
                      ..+.  ......+...  ...+.+++|+||+|....  .......+   .+.++.   ...+-+++++|+..+.....  
T Consensus       356 ~~~~p~~tV~e~l~~a--~~~~~DvVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--  429 (503)
T 2yhs_A          356 TGADSASVIFDAIQAA--KARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--  429 (503)
T ss_dssp             TTCCHHHHHHHHHHHH--HHTTCSEEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--
T ss_pred             cCcCHHHHHHHHHHHH--HhcCCCEEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--
Confidence            1111  1122222222  235789999999996543  11122222   222221   12567889999876532222  


Q ss_pred             HhHHHHHHHHhh-cCCCeEEEeeccccC
Q 020549          218 SNMLYACSILYK-TRLPLVLAFNKTDVA  244 (324)
Q Consensus       218 ~~~~~~~~~~~~-~~~p~ilv~NK~Dl~  244 (324)
                           .+..+.. .++ ..+|+||+|-.
T Consensus       430 -----~ak~f~~~~~i-tgvIlTKLD~t  451 (503)
T 2yhs_A          430 -----QAKLFHEAVGL-TGITLTKLDGT  451 (503)
T ss_dssp             -----HHHHHHHHTCC-SEEEEECGGGC
T ss_pred             -----HHHHHHhhcCC-CEEEEEcCCCc
Confidence                 1122222 333 36899999964

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.87  E-value=1.1e-08  Score=90.46  Aligned_cols=108  Identities=10%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------cccccc-----ccchhc------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAA-----NIDIRD------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------~~~~~~-----~~~~~~------  122 (324)
                      ..++..++|+|++|||||||++.|++...+..+.+.+.+.+....            ..+..+     ...+.+      
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~  110 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA  110 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHH
Confidence            356788999999999999999999998888777777766543100            001100     000111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ..++.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt  171 (275)
T 3gfo_A          111 VNMKLPEDEIRKRVDNALKRTGIEHLKD--KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT  171 (275)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhc--CCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence                      124567788888865332  233469999999999999999999999999884

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.87  E-value=1.2e-08  Score=86.82  Aligned_cols=106  Identities=13%  Similarity=0.134  Sum_probs=74.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-----cccccccc----ccchh--------------cH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTLPFAA----NIDIR--------------DT  123 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-----~~~~~~~~----~~~~~--------------~~  123 (324)
                      ..+.+++|+|++|||||||++.|++...+..+.+.+.+.+..     +...+...    ...+.              ..
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~  112 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK  112 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHH
Confidence            456779999999999999999999988777666666543320     00000000    00001              12


Q ss_pred             HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+.++++.+++... .  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       113 ~~~~~~l~~~gl~~~-~--~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A          113 NEIMDALESVEVLDL-K--KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             HHHHHHHHHTTCCCT-T--SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             HHHHHHHHHcCCCcC-C--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            345677888988654 2  233469999999999999999999999999985

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.85  E-value=3.6e-08  Score=86.69  Aligned_cols=108  Identities=13%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc----cch-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN----IDI-----------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~----~~~-----------  120 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+.....          .+....    ..+           
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  113 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY  113 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence            3567889999999999999999999998887777776554432100          000000    000           


Q ss_pred             ---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhC------CCCEEEEeCCC
Q 020549          121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPG  175 (324)
Q Consensus       121 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~liDtpG  175 (324)
                         .....+.++++.+++......  ....+|.|++|++.++.+...      +++++|+|.|-
T Consensus       114 ~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt  175 (266)
T 4g1u_C          114 GGSQDRQALQQVMAQTDCLALAQR--DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT  175 (266)
T ss_dssp             CSTTHHHHHHHHHHHTTCSTTTTS--BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred             CcHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence               112356778889988653322  234699999999999999998      99999999885

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.84  E-value=1.1e-08  Score=89.42  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=74.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc---------ccccccc----ccchhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLPFAA----NIDIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~---------~~~~~~~----~~~~~~----------  122 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+...         ...+...    ...+++          
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~  117 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA  117 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC
Confidence            35677899999999999999999999987777777665543210         0000000    001111          


Q ss_pred             ------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       118 ~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  174 (256)
T 1vpl_A          118 SSSSEIEEMVERATEIAGLGEKIK--DRVSTYSKGMVRKLLIARALMVNPRLAILDEPT  174 (256)
T ss_dssp             CCHHHHHHHHHHHHHHHCCGGGGG--SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CChHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                  123456788888864322  233469999999999999999999999999984

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.84  E-value=2e-08  Score=86.92  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc--------ccccccccc----cchh-------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAAN----IDIR-------------  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~--------~~~~~~~~~----~~~~-------------  121 (324)
                      .. ..++|+|++|||||||++.|.+...+..+.+.+.+.+..        +...+....    ..++             
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~  101 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence            35 679999999999999999999998887777777554321        100111100    0001             


Q ss_pred             -cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ....+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  154 (240)
T 2onk_A          102 ERDRRVREMAEKLGIAHLLD--RKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTT--CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             hHHHHHHHHHHHcCCHHHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence             1224567788888865332  223469999999999999999999999999984

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.83  E-value=6.8e-08  Score=82.71  Aligned_cols=107  Identities=13%  Similarity=0.152  Sum_probs=74.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc--------------ccccccc----cchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------TLPFAAN----IDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~----~~~~~------  122 (324)
                      ..+..++|+|++|||||||++.|.+...+..+.+.+.+.+....              ..+....    ..+.+      
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~  107 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM  107 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHH
Confidence            46778999999999999999999998877766666655432110              0000000    00111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  168 (224)
T 2pcj_A          108 LKMGKPKKEAKERGEYLLSELGLGDKLS--RKPYELSGGEQQRVAIARALANEPILLFADEPT  168 (224)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHTTCTTCTT--CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhh--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                      123456788888865432  223469999999999999999999999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.83  E-value=5.8e-08  Score=83.80  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=74.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------------ccccccccc----chhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFAANI----DIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~~----~~~~-----  122 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+...              ...+....+    .+.+     
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~  107 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP  107 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence            35678899999999999999999999887776666665433210              000000000    0011     


Q ss_pred             --------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 --------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 --------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                    ...+.++++.+++.... .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt  173 (235)
T 3tif_A          108 LIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQQRVAIARALANNPPIILADQPT  173 (235)
T ss_dssp             HHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHhhhccCCCHHHHHHHHHHHHHHCCCChhh-hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                          12345678888876421 12234469999999999999999999999999885

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.82  E-value=7.3e-08  Score=84.06  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=72.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE-------EEeccCCcccccccccccch--------------hcHHH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-------YVMNLDPAVMTLPFAANIDI--------------RDTIR  125 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~-------~i~~~d~~~~~~~~~~~~~~--------------~~~~~  125 (324)
                      ..+..++|+|++|||||||++.|++...+..+.+       ++.+........+...++..              .....
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~  108 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV  108 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH
Confidence            4677899999999999999999999876655443       22222111111111111100              11234


Q ss_pred             HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      +.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       109 ~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt  156 (253)
T 2nq2_C          109 AMQALDYLNLTHLAK--REFTSLSGGQRQLILIARAIASECKLILLDEPT  156 (253)
T ss_dssp             HHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred             HHHHHHHcCChHHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            667888888865322  233469999999999999999999999999985

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.82  E-value=4.7e-08  Score=89.86  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=76.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------------cc---cccccch-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------------LP---FAANIDI-------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~---~~~~~~~-------  120 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+.....               +|   ...++..       
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~  105 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA  105 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTC
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCC
Confidence            3567889999999999999999999998887777766554331100               00   0001100       


Q ss_pred             -h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       +  ...++.++++.+++......  ....+|.|++|++.++++...+++++|+|.|-
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~r--~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt  161 (381)
T 3rlf_A          106 KKEVINQRVNQVAEVLQLAHLLDR--KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTC--CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcC--ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence             0  11246678899988654332  33469999999999999999999999999984

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.82  E-value=7.9e-08  Score=84.27  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------------cccccccc----cchhc-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAAN----IDIRD-------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------------~~~~~~~~----~~~~~-------  122 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+...            ...+....    ..+++       
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~  126 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM  126 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence            35677899999999999999999999987777777765544310            00000000    00111       


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       127 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPt  187 (263)
T 2olj_A          127 KVRKWPREKAEAKAMELLDKVGLKDKAH--AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT  187 (263)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCchHhc--CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence                      123456788888854322  233469999999999999999999999999884

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.81  E-value=4.3e-09  Score=96.23  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC---------CchhHHHhHHHHHHHHh----hcC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA---------NPMTFMSNMLYACSILY----KTR  231 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~---------~~~~~~~~~~~~~~~~~----~~~  231 (324)
                      ...+.+|||+||+++.  .....    ++  ..++.+|||+|.++.-         .....+...+   ..+.    ..+
T Consensus       192 ~~~l~iwDt~GQe~~r--~~w~~----yf--~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~---~~i~~~~~~~~  260 (353)
T 1cip_A          192 DLHFKMFDVGGQRSER--KKWIH----CF--EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF---DSICNNKWFTD  260 (353)
T ss_dssp             TEEEEEEEECCSGGGG--GGGGG----GC--TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH---HHHHTCGGGTT
T ss_pred             CeeEEEEeCCCchhhh--HHHHH----HH--hcCCEEEEEEECccccccccccchhhhHHHHHHHH---HHHHcCccccC
Confidence            4567899999998762  11111    11  2368999999987631         1122222222   2222    247


Q ss_pred             CCeEEEeeccccCChHhHHHHHHhHHHHHHHHhc--CccchhhHHHHHHHhHHHH-----hccCceeeeccccCCChHHH
Q 020549          232 LPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISS--DHSYTSTLTNSLSLALDEF-----YKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       232 ~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~~~~~-----~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .|+|||+||+|+.......   ..+.   ..+..  .+.......+.....+...     ...+.+++|||++|.||+++
T Consensus       261 ~piiLv~NK~DL~~~ki~~---~~l~---~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v  334 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKK---SPLT---ICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV  334 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTT---SCGG---GTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccc---cchh---hcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence            8999999999985321000   0000   00000  0000000000000000001     12467899999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          305 FKAVEESAQEF  315 (324)
Q Consensus       305 ~~~i~~~~~~~  315 (324)
                      |..+.+.+...
T Consensus       335 F~~v~~~i~~~  345 (353)
T 1cip_A          335 FDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.81  E-value=2.1e-08  Score=88.77  Aligned_cols=108  Identities=14%  Similarity=0.175  Sum_probs=75.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc--c----------cccccccc--c----chhc-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--V----------MTLPFAAN--I----DIRD-----  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~--~----------~~~~~~~~--~----~~~~-----  122 (324)
                      ..++.+++|+|++|||||||++.|++...+..+.+.+.+.+..  .          ...+....  +    .+++     
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~  123 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG  123 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence            3467789999999999999999999998887777777664432  0          00000000  0    0000     


Q ss_pred             ---------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ---------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                     ...+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt  189 (279)
T 2ihy_A          124 AFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ--QYIGYLSTGEKQRVMIARALMGQPQVLILDEPA  189 (279)
T ss_dssp             C---------CCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred             hhhccccccCCcHHHHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence                           123456788888754322  233469999999999999999999999999984

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.79  E-value=1.3e-07  Score=83.00  Aligned_cols=106  Identities=20%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------cc-cccccc--ccchhc------------H
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VM-TLPFAA--NIDIRD------------T  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~-~~~~~~--~~~~~~------------~  123 (324)
                      .. +.+++|+|++|||||||++.|++.. +..+.+.+.+.+..       +. ..+...  ...+.+            .
T Consensus        28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~  105 (263)
T 2pjz_A           28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR  105 (263)
T ss_dssp             EC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred             EC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence            35 7789999999999999999999998 87777766553321       11 111111  111111            2


Q ss_pred             HHHHHHHHHcCCC-CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+.++++.+++. ....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       106 ~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  156 (263)
T 2pjz_A          106 DLFLEMLKALKLGEEILR--RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF  156 (263)
T ss_dssp             HHHHHHHHHTTCCGGGGG--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred             HHHHHHHHHcCCChhHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence            2356778888886 4222  233469999999999999999999999999985

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.78  E-value=3.2e-08  Score=86.83  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=74.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------------------ccccccc----cc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------------------MTLPFAA----NI  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------------------~~~~~~~----~~  118 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+...                       ...+...    ..
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~l  108 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM  108 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCC
Confidence            35677899999999999999999999887777777665543320                       0000000    00


Q ss_pred             chhc-----------------HHHHHHHHHHcCCCCC-CcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          119 DIRD-----------------TIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       119 ~~~~-----------------~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .+.+                 ...+.++++.+++... .  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       109 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  181 (262)
T 1b0u_A          109 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ--GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT  181 (262)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH--TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred             cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhh--cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            0111                 1234567888887543 2  2234469999999999999999999999999884

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.78  E-value=1e-08  Score=93.78  Aligned_cols=30  Identities=17%  Similarity=0.170  Sum_probs=25.0

Q ss_pred             CceeeeccccCCChHHHHHHHHHHHHHHHH
Q 020549          288 LKSVGVSSVSGAGIEAYFKAVEESAQEFME  317 (324)
Q Consensus       288 ~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~  317 (324)
                      ..+++|||+++.||+++|..+.+.+.....
T Consensus       319 ~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l  348 (354)
T 2xtz_A          319 FKIYRTTALDQKLVKKTFKLVDETLRRRNL  348 (354)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999988765443

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.78  E-value=1.1e-07  Score=86.65  Aligned_cols=108  Identities=12%  Similarity=0.141  Sum_probs=76.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc--------cccccc----cccchhcH----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFA----ANIDIRDT----------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~--------~~~~~~----~~~~~~~~----------  123 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+...        ...+..    +...+++.          
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~  102 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI  102 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence            35677899999999999999999999988877777765543210        000000    01111111          


Q ss_pred             ---HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 ---IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         .++.++++.+++......  ....+|.|++|++.++++...+++++|+|.|-
T Consensus       103 ~~~~~v~~~l~~~~L~~~~~~--~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~  155 (348)
T 3d31_A          103 KDPKRVLDTARDLKIEHLLDR--NPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (348)
T ss_dssp             CCHHHHHHHHHHTTCTTTTTS--CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             CHHHHHHHHHHHcCCchHhcC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence               345678889988654332  23469999999999999999999999999984

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.78  E-value=1.6e-07  Score=84.03  Aligned_cols=40  Identities=30%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ++..|+|+|++|||||||++.|.+...+.++.+.+.+.|.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~  140 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT  140 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence            5778999999999999999999999888888888877664

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.77  E-value=9.2e-08  Score=87.26  Aligned_cols=107  Identities=16%  Similarity=0.202  Sum_probs=75.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc--------ccccc----cccchhc------------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------TLPFA----ANIDIRD------------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~--------~~~~~----~~~~~~~------------  122 (324)
                      ..+..++|+|++|||||||++.|++...+..+.+.+.+.+....        ..+..    +...+++            
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~  118 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP  118 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCC
Confidence            46778999999999999999999999887777776655432100        00000    0001111            


Q ss_pred             ----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          ..++.++++.+++.....  .....+|.|++|++.++++...+++++|+|.|=
T Consensus       119 ~~~~~~~v~~~l~~~gL~~~~~--r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  173 (355)
T 1z47_A          119 KDEMDARVRELLRFMRLESYAN--RFPHELSGGQQQRVALARALAPRPQVLLFDEPF  173 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHHHHHHHHHHHHcCChhHhc--CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                124567888898865332  223469999999999999999999999999984

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.75  E-value=6.2e-08  Score=88.70  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----c---ccc----cccchhc-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----L---PFA----ANIDIRD-----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----~---~~~----~~~~~~~-----------  122 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+.....     +   +..    ++..+.+           
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~  105 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA  105 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence            3567789999999999999999999998877777666554321100     0   000    0001111           


Q ss_pred             -----HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ..++.++++.+++......  ....+|.|++|++.++++...+++++|+|.|-
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  161 (362)
T 2it1_A          106 PREEIDKKVREVAKMLHIDKLLNR--YPWQLSGGQQQRVAIARALVKEPEVLLLDEPL  161 (362)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTC--CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred             CHHHHHHHHHHHHHHcCCchHhhC--ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence                 1245678889998654332  23469999999999999999999999999984

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.75  E-value=1.4e-07  Score=86.24  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=75.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc---------------cccc---ccccc--h--h--
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPF---AANID--I--R--  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~---------------~~~~---~~~~~--~--~--  121 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+....               -++.   ..++.  .  +  
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~  105 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI  105 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence            356778999999999999999999999877776666655432100               0000   00000  0  0  


Q ss_pred             --c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 --D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 --~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .  ..++.++++.+++.....  .....+|.|++|++.++++...+++++|+|.|=
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~--r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~  161 (359)
T 2yyz_A          106 SKDEVEKRVVEIARKLLIDNLLD--RKPTQLSGGQQQRVALARALVKQPKVLLFDEPL  161 (359)
T ss_dssp             HHHHTTHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CHHHHHHHHHHHHHHcCCchHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence              0  124678889998865332  223469999999999999999999999999984

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.74  E-value=3.1e-07  Score=86.18  Aligned_cols=153  Identities=19%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .++..|+++|.+|+||||++..|....... +..+.++..|+.....        .+.  +..+.+..++..-.+..   
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a--------~~q--l~~~~~~~~l~v~~~~~---  164 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA--------IKQ--LETLAEQVGVDFFPSDV---  164 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH--------HHH--HHHHHHHHTCEECCCCS---
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH--------HHH--HHhhcccCCeeEEeCCC---
Confidence            456789999999999999999999877666 7788887777643211        000  01111122221100000   


Q ss_pred             cccC-hHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHH
Q 020549          146 NLFT-TKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~-~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~  223 (324)
                       ... ..+ ...+..+  ...+++++|+||||.....  ......+........++.+++|+|+..+.   +.+.    .
T Consensus       165 -~~dp~~i~~~~l~~~--~~~~~D~VIIDTpG~l~~~--~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~----~  232 (433)
T 2xxa_A          165 -GQKPVDIVNAALKEA--KLKFYDVLLVDTAGRLHVD--EAMMDEIKQVHASINPVETLFVVDAMTGQ---DAAN----T  232 (433)
T ss_dssp             -SSCHHHHHHHHHHHH--HHTTCSEEEEECCCCCTTC--HHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHH----H
T ss_pred             -CCCHHHHHHHHHHHH--HhCCCCEEEEECCCccccc--HHHHHHHHHHHHhhcCcceeEEeecchhH---HHHH----H
Confidence             000 011 1111111  1257899999999965431  11222222222234578999999997653   2221    1


Q ss_pred             HHHHhhcCCC-eEEEeeccccCC
Q 020549          224 CSILYKTRLP-LVLAFNKTDVAQ  245 (324)
Q Consensus       224 ~~~~~~~~~p-~ilv~NK~Dl~~  245 (324)
                      +..+.. ..+ .-+|+||+|...
T Consensus       233 ~~~f~~-~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          233 AKAFNE-ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             HHHHHH-HSCCCCEEEECTTSSS
T ss_pred             HHHHhc-cCCCeEEEEecCCCCc
Confidence            122222 244 347999999754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.74  E-value=8.8e-08  Score=87.51  Aligned_cols=108  Identities=19%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc------c----c----------ccc---ccccc--h
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------M----T----------LPF---AANID--I  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~------~----~----------~~~---~~~~~--~  120 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+...      .    .          ++.   ..++.  .
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~  107 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL  107 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence            35677899999999999999999999887776666665433210      0    0          000   00000  0


Q ss_pred             h------c--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 R------D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 ~------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      +      .  ..++.++++.+++.....  .....+|.|++|++.++++...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~--~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~  168 (353)
T 1oxx_K          108 TNMKMSKEEIRKRVEEVAKILDIHHVLN--HFPRELSGAQQQRVALARALVKDPSLLLLDEPF  168 (353)
T ss_dssp             TTSSCCHHHHHHHHHHHHHHTTCGGGTT--SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence            0      0  224667889998865332  223469999999999999999999999999984

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.73  E-value=2.1e-07  Score=81.83  Aligned_cols=108  Identities=12%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc-------ccccccc-----------cccch-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFA-----------ANIDI-------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~-------~~~~~~~-----------~~~~~-------  120 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+..       +...+..           .++..       
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~  109 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP  109 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence            3567789999999999999999999988777666666443321       0000000           00000       


Q ss_pred             --hcHHHHHHHHHHcCCC--CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 --RDTIRYKEVMKQFNLG--PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 --~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .....+.++++.+++.  ....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       110 ~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt  166 (266)
T 2yz2_A          110 DRDPVPLVKKAMEFVGLDFDSFKD--RVPFFLSGGEKRRVAIASVIVHEPDILILDEPL  166 (266)
T ss_dssp             TSCSHHHHHHHHHHTTCCHHHHTT--CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHHHHHHHHHHHHcCcCCccccc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence              0122456788888886  3222  223469999999999999999999999999885

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.73  E-value=6.5e-08  Score=84.63  Aligned_cols=108  Identities=14%  Similarity=0.136  Sum_probs=74.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc-----------cccccc----------ccc----h
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPFAA----------NID----I  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~-----------~~~~~~----------~~~----~  120 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+....           ..+...          ++.    .
T Consensus        30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~  109 (257)
T 1g6h_A           30 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC  109 (257)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence            346778999999999999999999998877766666655432100           000000          000    0


Q ss_pred             -------------------hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                         .....+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt  181 (257)
T 1g6h_A          110 PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD--RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI  181 (257)
T ss_dssp             TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred             hccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC--CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence                               00124567788888754322  233469999999999999999999999999885

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.73  E-value=3.2e-08  Score=85.07  Aligned_cols=109  Identities=20%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec------cCCcccccccccccch---hcHHHHHHHHHHcCCCC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANIDI---RDTIRYKEVMKQFNLGP  137 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~------~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~  137 (324)
                      .++..++|+|++|||||||++.|++...+..+.+.+.+      .++.....+...++..   .......++++.+++..
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~  111 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEE  111 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHH
Confidence            46778999999999999999999998877666554432      1221111000001100   01112233344333321


Q ss_pred             C-----Cc----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          138 N-----GG----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       138 ~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .     .+    +-.....+|.|++|++.++++...+++++|+|.|-
T Consensus       112 ~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt  158 (229)
T 2pze_A          112 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  158 (229)
T ss_dssp             HHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             HHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence            0     00    00112469999999999999999999999999985

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.72  E-value=2.1e-08  Score=86.71  Aligned_cols=110  Identities=18%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec------cCCcccccccccccch--h-cHHHHHHHHHHcC--
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANIDI--R-DTIRYKEVMKQFN--  134 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~------~d~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~--  134 (324)
                      ..++..++|+|++|||||||++.|++...+..+.+.+.+      .++.....+...++..  . ......++.+.++  
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~  107 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL  107 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCH
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhH
Confidence            356778999999999999999999998776655554422      1221111110001100  0 0011223333222  


Q ss_pred             ----CCCCC---cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          135 ----LGPNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       135 ----l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                          +.+.+   -.-.....+|.|++|++.++++...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  155 (237)
T 2cbz_A          108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL  155 (237)
T ss_dssp             HHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence                22211   011233469999999999999999999999999985

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.71  E-value=2.7e-07  Score=83.16  Aligned_cols=42  Identities=21%  Similarity=0.356  Sum_probs=35.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ..++..|+++|++|+||||++..|.+.....++.+.+++.|+
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            345778999999999999999999988777777888877664

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.70  E-value=1.7e-07  Score=86.25  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-------c----cc---ccc----cccchhc------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------M----TL---PFA----ANIDIRD------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-------~----~~---~~~----~~~~~~~------  122 (324)
                      ..+..++|+|++|||||||++.|.+...+..+.+.+.+.+...       .    .+   +..    ++..+.+      
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~  106 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL  106 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence            4677899999999999999999999988777766665433211       0    00   000    0001111      


Q ss_pred             ----------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ----------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                ..++.++++.+++......  ....+|.|++|++.++++...+++++|+|.|=
T Consensus       107 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  167 (372)
T 1g29_1          107 KLRKVPRQEIDQRVREVAELLGLTELLNR--KPRELSGGQRQRVALGRAIVRKPQVFLMDEPL  167 (372)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHTCGGGTTC--CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCchHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence                      1245678888888653332  23469999999999999999999999999984

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.70  E-value=4.9e-08  Score=84.50  Aligned_cols=107  Identities=13%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc-----------ccccccc----------ccch-----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAA----------NIDI-----  120 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~~~----------~~~~-----  120 (324)
                      ..+..++|+|++|||||||++.|++...+..+.+.+.+.+...           ...+...          ++..     
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~  109 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR  109 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC
Confidence            4677899999999999999999999887776666665443210           0000000          0000     


Q ss_pred             --hc--HHHHHHHHHHcC-CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 --RD--TIRYKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 --~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        ..  ...+.++++.++ +.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       110 ~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt  167 (240)
T 1ji0_A          110 KDKEGIKRDLEWIFSLFPRLKERLK--QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS  167 (240)
T ss_dssp             CCSSHHHHHHHHHHHHCHHHHTTTT--SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred             CCHHHHHHHHHHHHHHcccHhhHhc--CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence              01  123456666663 543222  223469999999999999999999999999985

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.70  E-value=2.2e-07  Score=86.74  Aligned_cols=152  Identities=19%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++..|+++|++|+||||++..|.+.....++.+.+++.|+.....        ..  ....+.+..++..    +..-..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa--------~~--qL~~~~~~~gv~v----~~~~~~  162 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA--------RE--QLRLLGEKVGVPV----LEVMDG  162 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH--------HH--HHHHHHHHHTCCE----EECCTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh--------HH--HHHHhcccCCccE----EecCCC
Confidence            567899999999999999999999887778888887766432100        00  0111222233221    000000


Q ss_pred             cC-hHH-HHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          148 FT-TKF-DEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~-~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                      .. ..+ ...+..+  ....++++|+||||....  .......+........++.+++|+|+..+   ++..    ..+.
T Consensus       163 ~~p~~i~~~~l~~~--~~~~~DvVIIDTaG~l~~--d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av----~~a~  231 (425)
T 2ffh_A          163 ESPESIRRRVEEKA--RLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG---QEAL----SVAR  231 (425)
T ss_dssp             CCHHHHHHHHHHHH--HHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHH----HHHH
T ss_pred             CCHHHHHHHHHHHH--HHCCCCEEEEcCCCcccc--cHHHHHHHHHhhhccCCceEEEEEeccch---HHHH----HHHH
Confidence            00 111 1112211  135789999999996543  11122222222223357889999998654   2211    1112


Q ss_pred             HHhhcCCC-eEEEeeccccCC
Q 020549          226 ILYKTRLP-LVLAFNKTDVAQ  245 (324)
Q Consensus       226 ~~~~~~~p-~ilv~NK~Dl~~  245 (324)
                      .+.. ..+ .-+|+||+|...
T Consensus       232 ~f~~-~l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          232 AFDE-KVGVTGLVLTKLDGDA  251 (425)
T ss_dssp             HHHH-HTCCCEEEEESGGGCS
T ss_pred             HHHh-cCCceEEEEeCcCCcc
Confidence            2222 233 467999999754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.70  E-value=1.6e-07  Score=86.23  Aligned_cols=108  Identities=17%  Similarity=0.205  Sum_probs=75.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------------ccc---cccc--ch-----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------------LPF---AANI--DI-----  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~~---~~~~--~~-----  120 (324)
                      ...+..++|+|++|||||||++.|.+...+..+.+.+.+.+.....               ++.   ..++  ..     
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~  113 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF  113 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence            3567789999999999999999999998877777666554321100               000   0000  00     


Q ss_pred             -hc--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -RD--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       +.  ..++.++++.+++......  ....+|.|++|++.++++....++++|+|.|=
T Consensus       114 ~~~~~~~~v~~~l~~~~L~~~~~r--~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  169 (372)
T 1v43_A          114 PKDEIDKRVRWAAELLQIEELLNR--YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  169 (372)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTS--CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence             01  1246678899988653322  23469999999999999999999999999984

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.69  E-value=4.4e-08  Score=96.04  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=42.9

Q ss_pred             CCCEEEEeCCCCcchhhh---hhhHHHHHHHHhc---cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEe
Q 020549          165 HLDYVLVDTPGQIEIFTW---SASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAF  238 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~---~~~~~~~~~~~~~---~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  238 (324)
                      .+++.|+|+||.......   ......+...+..   ....+++.++++........    .+..+..+...+.+.|+|+
T Consensus       146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~----~l~la~~v~~~g~rtI~Vl  221 (608)
T 3szr_A          146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE----ALSMAQEVDPEGDRTIGIL  221 (608)
T ss_dssp             SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH----HHHHHHHHCSSCCSEEEEE
T ss_pred             CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH----HHHHHHHHhhcCCceEEEe
Confidence            478999999996553111   0112222222222   22356777776543333221    1333455566788999999


Q ss_pred             eccccCChH
Q 020549          239 NKTDVAQHE  247 (324)
Q Consensus       239 NK~Dl~~~~  247 (324)
                      ||+|++...
T Consensus       222 TK~Dlv~~g  230 (608)
T 3szr_A          222 TKPDLVDKG  230 (608)
T ss_dssp             ECGGGSSSS
T ss_pred             cchhhcCcc
Confidence            999998654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.69  E-value=3.7e-08  Score=91.23  Aligned_cols=29  Identities=14%  Similarity=0.095  Sum_probs=24.5

Q ss_pred             CceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549          288 LKSVGVSSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       288 ~~iv~vSA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                      +.+++|||+++.||+++|..+.+.+....
T Consensus       359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          359 CYPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence            45678999999999999999988876543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.68  E-value=3e-07  Score=80.99  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcHH--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDTI--------  124 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~~--------  124 (324)
                      ...+.+++|+|++|||||||++.|++...+..+.+.+.+.+....          ..+....+   .+++.+        
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~  121 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP  121 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCC
Confidence            456778999999999999999999998877766666655432100          00000000   001110        


Q ss_pred             ------------HHHHHHHHc--CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          125 ------------RYKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       125 ------------~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                  .+.++++.+  ++....+  .....+|.|++|++.++++...+++++|+|.|-
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~--~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt  184 (271)
T 2ixe_A          122 TMEEITAVAMESGAHDFISGFPQGYDTEVG--ETGNQLSGGQRQAVALARALIRKPRLLILDNAT  184 (271)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHSTTGGGSBCC--GGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hHHHHHHHHHHHhHHHHHHhhhcchhhhhc--CCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence                        112334444  2322111  223469999999999999999999999999885

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.68  E-value=4.8e-07  Score=80.69  Aligned_cols=155  Identities=17%  Similarity=0.112  Sum_probs=81.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++..++++|++|+||||++..|.+.....++.+.+++.|+....          .......+.+..++..-.+   ....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~----------~~~ql~~~~~~~~l~~~~~---~~~~  163 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA----------AREQLRLLGEKVGVPVLEV---MDGE  163 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH----------HHHHHHHHHHHHTCCEEEC---CTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh----------HHHHHHHhcccCCeEEEEc---CCCC
Confidence            56789999999999999999999987777778887776653210          0001112333333322100   0000


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      -...+ .+.........+++++|+||||....  .......+........++.+++|+|+..+   .+.+.    .+..+
T Consensus       164 ~p~~l-~~~~l~~~~~~~~D~viiDtpp~~~~--d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~----~~~~~  233 (295)
T 1ls1_A          164 SPESI-RRRVEEKARLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALS----VARAF  233 (295)
T ss_dssp             CHHHH-HHHHHHHHHHHTCCEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHH----HHHHH
T ss_pred             CHHHH-HHHHHHHHHhCCCCEEEEeCCCCccc--cHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHH----HHHHH
Confidence            00011 11112222224789999999986432  11112222222222346888899997642   22221    11222


Q ss_pred             hhcCCCeEEEeeccccCC
Q 020549          228 YKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~  245 (324)
                      ...-...-+|+||+|...
T Consensus       234 ~~~~~i~givlnk~d~~~  251 (295)
T 1ls1_A          234 DEKVGVTGLVLTKLDGDA  251 (295)
T ss_dssp             HHHTCCCEEEEECGGGCS
T ss_pred             hhcCCCCEEEEECCCCCc
Confidence            221122457999999754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.68  E-value=1.3e-07  Score=81.92  Aligned_cols=110  Identities=11%  Similarity=-0.025  Sum_probs=73.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc---------ccch-----h
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA---------NIDI-----R  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~---------~~~~-----~  121 (324)
                      ...+.+++|+|++|||||||++.|++...+..+.+.+.+.+...          ...+..+         ++..     .
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~  104 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDY  104 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCC
Confidence            35678899999999999999999999987777777765543211          0000000         0100     0


Q ss_pred             cHHHHHHHHHHcCCCCCCcc---------cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 DTIRYKEVMKQFNLGPNGGI---------LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ....+.++++.+++......         -.....+|.|++|++.++++...+++++|+|.|-
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPt  167 (243)
T 1mv5_A          105 TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT  167 (243)
T ss_dssp             CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            12234566667776442211         1123469999999999999999999999999884

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.66  E-value=2.5e-07  Score=80.45  Aligned_cols=106  Identities=20%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccc----ccchh-----------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA----NIDIR-----------  121 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~----~~~~~-----------  121 (324)
                      ..+..++|+|++|||||||++.|++...+. +.+.+.+.+...          ...+...    ...++           
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  102 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT  102 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCC
Confidence            467789999999999999999999987776 666655433210          0000000    00011           


Q ss_pred             cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCC-------EEEEeCCC
Q 020549          122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-------YVLVDTPG  175 (324)
Q Consensus       122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~liDtpG  175 (324)
                      ....+.++++.+++.....  .....+|.|++|++.++.+...+++       ++|+|.|-
T Consensus       103 ~~~~~~~~l~~~~l~~~~~--~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt  161 (249)
T 2qi9_C          103 RTELLNDVAGALALDDKLG--RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM  161 (249)
T ss_dssp             CHHHHHHHHHHTTCGGGTT--SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred             cHHHHHHHHHHcCChhHhc--CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence            1234567888888864322  2334699999999999999998999       99999985

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.66  E-value=1.3e-07  Score=82.09  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=70.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chh----------c
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIR----------D  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~----------~  122 (324)
                      ...+.+++|+|++|||||||++.|++...+..+.+.+.+.+....          ..+....+   .++          .
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~  111 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS  111 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCC
Confidence            346778999999999999999999999877777666655432110          00000000   011          1


Q ss_pred             HHHHHHHHHHcCCCCCC-----c----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGPNG-----G----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++.+++....     |    .-.....+|.|++|++.++++...+++++|+|.|-
T Consensus       112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPt  173 (247)
T 2ff7_A          112 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT  173 (247)
T ss_dssp             HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            11233445555442110     0    11123469999999999999999999999999885

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.66  E-value=1.4e-07  Score=84.16  Aligned_cols=150  Identities=17%  Similarity=0.153  Sum_probs=78.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC-CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .++..|+++|++|+||||++..|.+.... .+..+.++..|+...    .    ..+.  ...+.+..++....    . 
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~----~----a~eq--L~~~~~~~gl~~~~----~-  167 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI----A----AVEQ--LKTYAELLQAPLEV----C-  167 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST----T----HHHH--HHHHHTTTTCCCCB----C-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc----h----HHHH--HHHHHHhcCCCeEe----c-
Confidence            35678999999999999999999988764 566777776665211    0    0111  11112222221110    0 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                        ...  .. +..+.....+++++|+||||....  .......+.+.+.....+-+++|+|+..+......+      +.
T Consensus       168 --~~~--~~-l~~al~~~~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~------~~  234 (296)
T 2px0_A          168 --YTK--EE-FQQAKELFSEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI------VK  234 (296)
T ss_dssp             --SSH--HH-HHHHHHHGGGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH------TT
T ss_pred             --CCH--HH-HHHHHHHhcCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH------HH
Confidence              111  11 111111235789999999996532  111122232332222356788999887543222211      11


Q ss_pred             HHhhcCCCeEEEeeccccCC
Q 020549          226 ILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~  245 (324)
                      .+...+. .-+|+||+|...
T Consensus       235 ~~~~l~~-~giVltk~D~~~  253 (296)
T 2px0_A          235 RFSSVPV-NQYIFTKIDETT  253 (296)
T ss_dssp             TTSSSCC-CEEEEECTTTCS
T ss_pred             HHhcCCC-CEEEEeCCCccc
Confidence            2222222 356779999764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.62  E-value=4.9e-08  Score=88.09  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCC-------C--CCCchhHHHhHHHHHHH-HhhcCCCe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP-------R--SANPMTFMSNMLYACSI-LYKTRLPL  234 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~-------~--~~~~~~~~~~~~~~~~~-~~~~~~p~  234 (324)
                      +..+.+|||+||+++.  ....    .++  ..++.++||+|.+       +  .......+...+..+.. ....+.|+
T Consensus       166 ~v~l~iwDtgGQe~~R--~~w~----~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i  237 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSER--RKWI----HCF--ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV  237 (327)
T ss_dssp             TEEEEEEEECCSHHHH--TTGG----GGC--SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred             ceeeEEEEcCCchhHH--HHHH----HHh--CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence            3567899999998762  1111    111  2357899999654       1  12222223222221111 11256899


Q ss_pred             EEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-------hccCceeeeccccCCChHHHHHH
Q 020549          235 VLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-------YKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       235 ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      +|++||+|+.......   ..+.   .-+..-.+......+....+...|       ...+.++++||+++.||+.+|..
T Consensus       238 iL~~NK~DL~~~ki~~---~~l~---~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~  311 (327)
T 3ohm_A          238 ILFLNKKDLLEEKIMY---SHLV---DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA  311 (327)
T ss_dssp             EEEEECHHHHHHHTTT---SCGG---GTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             EEEEECchhhhhhhcc---chHh---hhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence            9999999986432100   0000   000000000000000000000011       12356788999999999999999


Q ss_pred             HHHHHHHH
Q 020549          308 VEESAQEF  315 (324)
Q Consensus       308 i~~~~~~~  315 (324)
                      +.+.+...
T Consensus       312 v~~~Il~~  319 (327)
T 3ohm_A          312 VKDTILQL  319 (327)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99987653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.62  E-value=1.6e-07  Score=82.51  Aligned_cols=108  Identities=13%  Similarity=0.065  Sum_probs=69.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc--cCCcceEEEeccCCccc-----------ccccccc----------cc---
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAVM-----------TLPFAAN----------ID---  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~--~~~~~~~~i~~~d~~~~-----------~~~~~~~----------~~---  119 (324)
                      ...+.+++|+|++|||||||++.|++..  .+..+.+.+.+.+....           ..+....          +.   
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~  122 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL  122 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence            3567789999999999999999999973  33444555444322100           0000000          00   


Q ss_pred             --h-----------hc-HHHHHHHHHHcCCCC-CCccccccc-ccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 --I-----------RD-TIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 --~-----------~~-~~~~~~~~~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .           .. ...+.++++.+++.. ....  ... .+|.|++|++.++.+...+++++|+|.|-
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPt  192 (267)
T 2zu0_C          123 NAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESD  192 (267)
T ss_dssp             HHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTS--BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcC--CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence              0           00 123557788888853 2211  122 49999999999999999999999999985

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.61  E-value=2.3e-07  Score=82.23  Aligned_cols=104  Identities=26%  Similarity=0.399  Sum_probs=65.0

Q ss_pred             EeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHH
Q 020549          171 VDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFAL  250 (324)
Q Consensus       171 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~  250 (324)
                      -..||+...     ....+.+.+  ..+|++++|+|++.........   +.  ..+  .++|.++|+||+|+++.....
T Consensus         4 ~w~PGhm~k-----a~~~~~~~l--~~aDvVl~VvDAr~p~~~~~~~---l~--~~l--~~kp~ilVlNK~DL~~~~~~~   69 (282)
T 1puj_A            4 QWFPGHMAK-----ARREVTEKL--KLIDIVYELVDARIPMSSRNPM---IE--DIL--KNKPRIMLLNKADKADAAVTQ   69 (282)
T ss_dssp             -----CTTH-----HHHHHHHHG--GGCSEEEEEEETTSTTTTSCHH---HH--HHC--SSSCEEEEEECGGGSCHHHHH
T ss_pred             cCCchHHHH-----HHHHHHHHH--hhCCEEEEEEeCCCCCccCCHH---HH--HHH--CCCCEEEEEECcccCCHHHHH
Confidence            347886542     112233333  3479999999998765443211   11  111  579999999999999865433


Q ss_pred             HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          251 EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       251 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                      .+.+.++                           ..+.+++++||++|.|+++|++.|.+.+...
T Consensus        70 ~~~~~~~---------------------------~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           70 QWKEHFE---------------------------NQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHHHH---------------------------TTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHH---------------------------hcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            3332221                           1246899999999999999999998887654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.60  E-value=1.6e-07  Score=84.09  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=55.5

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      ..+|.+++|+|+.+.......+..++   ..+...++|+++|+||+|+.+..... ..+......+              
T Consensus        78 ~naD~vliV~d~~~p~~s~~~l~~~l---~~~~~~~~~~ilV~NK~DL~~~~~v~-~~~~~~~~~~--------------  139 (302)
T 2yv5_A           78 ANVDRVIIVETLKMPEFNNYLLDNML---VVYEYFKVEPVIVFNKIDLLNEEEKK-ELERWISIYR--------------  139 (302)
T ss_dssp             ESCCEEEEEECSTTTTCCHHHHHHHH---HHHHHTTCEEEEEECCGGGCCHHHHH-HHHHHHHHHH--------------
T ss_pred             HhcCEEEEEEECCCCCCCHHHHHHHH---HHHHhCCCCEEEEEEcccCCCccccH-HHHHHHHHHH--------------
Confidence            45799999999986532222222222   23344789999999999998764211 0111110000              


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                             .  .+.+++++||++|.|+++|+..+.
T Consensus       140 -------~--~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          140 -------D--AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             -------H--TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             -------H--CCCeEEEEECCCCCCHHHHHhhcc
Confidence                   1  146899999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.60  E-value=1.7e-07  Score=84.62  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=79.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ...++|+|++|||||||++.|.+..  .+.++.++..+.+...+....-.....         .+..-.+||+||+..  
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~---------~~~el~~gCicc~~~--   70 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRAT---------QIKTLTNGCICCSRS--   70 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSC---------EEEEETTSCEEECTT--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCC---------CEEEECCCceEEccc--
Confidence            4579999999999999999999874  344555554444332221111000000         001114688999743  


Q ss_pred             ChHHHHHHHHHH--HHhC--CCCEEEEeCCCCcchhhhhhhHHHH-H-HHH-hccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          149 TTKFDEVISLIE--RRAD--HLDYVLVDTPGQIEIFTWSASGAII-T-EAF-ASTFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       149 ~~~~~~~~~~~~--~~~~--~~~~~liDtpG~~~~~~~~~~~~~~-~-~~~-~~~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                       ..+...+..+.  ....  .++++++++.|..++..   ....+ . ... .....+-++-++|+.+......   . +
T Consensus        71 -~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~---~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~---~-l  142 (318)
T 1nij_A           71 -NELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN---Q-F  142 (318)
T ss_dssp             -SCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH---HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH---H-C
T ss_pred             -HHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH---HHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh---h-c
Confidence             23333343331  1122  34899999999765411   10001 0 111 1122356778888854321111   0 0


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCCh
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      .  .-..+...+-++++||.|+.+.
T Consensus       143 s--~g~~Q~~~ad~ill~k~dl~de  165 (318)
T 1nij_A          143 T--IAQSQVGYADRILLTKTDVAGE  165 (318)
T ss_dssp             H--HHHHHHHTCSEEEEECTTTCSC
T ss_pred             h--HHHHHHHhCCEEEEECcccCCH
Confidence            0  0112222455778899999965

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.58  E-value=2e-07  Score=83.37  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=69.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~---------  123 (324)
                      ...+.+++|+|++|||||||++.|.+...+..+.+.+.+.+....          ..+..+.+   .+++.         
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~  156 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG  156 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCC
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCC
Confidence            356788999999999999999999998877776666655443210          00000000   01111         


Q ss_pred             -HHHHHHHHHcCCCCC-----Cc----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -IRYKEVMKQFNLGPN-----GG----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -~~~~~~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ..+.++++..++...     .|    +-..-..+|.|++|++.++++...+++++|+|.|-
T Consensus       157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPt  218 (306)
T 3nh6_A          157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEAT  218 (306)
T ss_dssp             HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence             122333443333210     01    11122359999999999999999999999999885

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.57  E-value=2.1e-07  Score=81.01  Aligned_cols=107  Identities=13%  Similarity=0.080  Sum_probs=66.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc--ccCCcceEEEeccCCcc-----------cccccccc----cchhc-------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAV-----------MTLPFAAN----IDIRD-------  122 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~--~~~~~~~~~i~~~d~~~-----------~~~~~~~~----~~~~~-------  122 (324)
                      ..+..++|+|++|||||||++.|++.  ..+..+.+.+.+.+...           ...+..+.    ..+++       
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  106 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQ  106 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHH
Confidence            46778999999999999999999996  44555566655443210           00011100    00001       


Q ss_pred             ------------HHHHHHHHHHcCCC-CCCcccccccc-cChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ------------TIRYKEVMKQFNLG-PNGGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ------------~~~~~~~~~~~~l~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                  ...+.++++.+++. ....  ..... +|.|++|++.++.+...+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt  171 (250)
T 2d2e_A          107 AKLGREVGVAEFWTKVKKALELLDWDESYLS--RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD  171 (250)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG--SBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred             hhccccCCHHHHHHHHHHHHHHcCCChhHhc--CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                        11345677778874 2211  22235 9999999999999999999999999884

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.55  E-value=5.5e-07  Score=80.54  Aligned_cols=42  Identities=31%  Similarity=0.513  Sum_probs=35.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ..++..++++|++|||||||++.|++...+.++.+.+.+.|.
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~  138 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  138 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            456788999999999999999999998877777888776654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.54  E-value=1.6e-07  Score=83.49  Aligned_cols=110  Identities=20%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec------cCCcccccccccccc-hh-cHHHHHHHHHHcCCCC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPAVMTLPFAANID-IR-DTIRYKEVMKQFNLGP  137 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~------~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~  137 (324)
                      ...+.+++|+|++|||||||++.|++...+..+.+.+.+      .++.....+...++. .. .......+++.+++..
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~  140 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE  140 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence            356788999999999999999999998766555443321      122111101000110 00 0111223333333321


Q ss_pred             C-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          138 N-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       138 ~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .     .+.    -.....+|.|++|++.++++...+++++|+|.|-
T Consensus       141 ~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt  187 (290)
T 2bbs_A          141 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  187 (290)
T ss_dssp             HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             HHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence            0     000    0112469999999999999999999999999985

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.52  E-value=1e-06  Score=80.48  Aligned_cols=42  Identities=31%  Similarity=0.513  Sum_probs=35.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ..++..|+|+|++|||||||++.|++...+.++.+.+.+.|.
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~  195 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  195 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence            356788999999999999999999998877777887776653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.52  E-value=5.1e-07  Score=87.08  Aligned_cols=107  Identities=20%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc--ccchhc-------------HHHHHHHHH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA--NIDIRD-------------TIRYKEVMK  131 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~-------------~~~~~~~~~  131 (324)
                      .++.+++|+|++|||||||++.|++...+..+.+.+.+............  ...+.+             .....++++
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~  371 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTK  371 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHH
Confidence            46788999999999999999999998777665554322211110000000  000011             112344555


Q ss_pred             HcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .+++...  .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       372 ~~~l~~~--~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT  413 (538)
T 3ozx_A          372 RLNLHRL--LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS  413 (538)
T ss_dssp             TTTGGGC--TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             HcCCHHH--hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            5555432  22344579999999999999999999999999885

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.50  E-value=1.2e-07  Score=83.95  Aligned_cols=28  Identities=21%  Similarity=0.530  Sum_probs=24.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.+|+++|.||||||||+|+|.+...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCce
Confidence            4568899999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.49  E-value=3e-07  Score=84.98  Aligned_cols=109  Identities=14%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------------cccc--cccc---hhcH
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------LPFA--ANID---IRDT  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------------~~~~--~~~~---~~~~  123 (324)
                      ...+.+++|+|++|||||||++.|.+... ..+.+.+.+.+.....                 ++.+  .++.   ....
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~  122 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSD  122 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCH
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCH
Confidence            45678899999999999999999999765 5556655554322100                 0000  0110   0112


Q ss_pred             HHHHHHHHHcCCCCCCccccc---------ccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLGPNGGILTS---------LNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+.++++.+++.........         -..+|.|++|++.++++...+++++|+|.|-
T Consensus       123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPt  183 (390)
T 3gd7_A          123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS  183 (390)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHH
T ss_pred             HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            245567777776432111111         0129999999999999999999999999984

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.45  E-value=2.3e-06  Score=74.83  Aligned_cols=109  Identities=14%  Similarity=0.011  Sum_probs=67.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccccc---chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~---~~~~----------  122 (324)
                      ...+..++|+|++|||||||++.|++...+ .+.+.+.+.+...          ...+..+.+   .+++          
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~  121 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT  121 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCC
Confidence            456788999999999999999999998654 4555554433210          000000000   0111          


Q ss_pred             HHHHHHHHHHcCCCCC-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++.+++...     .+.    -.....+|.|++|++.++++...+++++|+|.|-
T Consensus       122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  183 (260)
T 2ghi_A          122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT  183 (260)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCC
T ss_pred             HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            1123344555544210     111    1123469999999999999999999999999885

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.45  E-value=2e-06  Score=84.12  Aligned_cols=107  Identities=18%  Similarity=0.129  Sum_probs=70.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE------EEeccCCcc-cccccccccc-h-----hcHHHHHHHHHHc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAV-MTLPFAANID-I-----RDTIRYKEVMKQF  133 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~------~i~~~d~~~-~~~~~~~~~~-~-----~~~~~~~~~~~~~  133 (324)
                      ..+.+++|+|++|+|||||++.|.+...+..+.+      ..+-.++.. ...+....+. .     .....+.++++.+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~  459 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL  459 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence            4678899999999999999999999866543322      222222211 0000000000 0     0112345678888


Q ss_pred             CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ++....  ......+|.|++|++.++.+....++++|+|.|-
T Consensus       460 ~l~~~~--~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt  499 (607)
T 3bk7_A          460 GIIDLY--DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS  499 (607)
T ss_dssp             TCTTTT--TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             CCchHh--cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            886432  2344579999999999999999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.40  E-value=9.7e-07  Score=85.11  Aligned_cols=108  Identities=16%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE-----------EEeccCCc----------------cccccccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-----------YVMNLDPA----------------VMTLPFAANI  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~-----------~i~~~d~~----------------~~~~~~~~~~  118 (324)
                      ..++..++|+|++|||||||++.|++...+..+.+           .+.+.+..                ..........
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            45678899999999999999999999865543322           00000000                0000000000


Q ss_pred             ---chhc-------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          119 ---DIRD-------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       119 ---~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         .+..       .....++++.+++....  ......+|.|++|++.++.+...+++++|+|.|-
T Consensus       102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~--~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt  166 (538)
T 3ozx_A          102 LKGTVNEILTKIDERGKKDEVKELLNMTNLW--NKDANILSGGGLQRLLVAASLLREADVYIFDQPS  166 (538)
T ss_dssp             CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGT--TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             ccCcHHHHhhcchhHHHHHHHHHHcCCchhh--cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence               0011       11345778888875432  2344569999999999999999999999999885

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.39  E-value=3.8e-06  Score=81.92  Aligned_cols=110  Identities=11%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc----------ccccccccc---chh-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DIR-----------  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~---~~~-----------  121 (324)
                      -+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+...          ...+..+.+   .++           
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~  445 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEY  445 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCC
Confidence            35678899999999999999999999887777777665543210          000111000   011           


Q ss_pred             cHHHHHHHHHHcCCCCC-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 DTIRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ~~~~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ....+.++++..++..-     .|.    -..-..+|.|++|++..+++...+++++++|.|-
T Consensus       446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpt  508 (582)
T 3b5x_A          446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT  508 (582)
T ss_pred             CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            11223445555544211     011    1112359999999999999999999999999985

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.36  E-value=1.3e-06  Score=85.15  Aligned_cols=110  Identities=13%  Similarity=0.073  Sum_probs=70.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chh-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIR-----------  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~-----------  121 (324)
                      -+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+....          ..+..+.+   .++           
T Consensus       366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~  445 (582)
T 3b60_A          366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY  445 (582)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCC
Confidence            356788999999999999999999998877777766655432110          00100000   011           


Q ss_pred             cHHHHHHHHHHcCCCCC-----Cc----ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 DTIRYKEVMKQFNLGPN-----GG----ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 ~~~~~~~~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ....+.++++..++..-     .|    +-..-..+|.|++|++.++++...+++++++|.|-
T Consensus       446 ~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpt  508 (582)
T 3b60_A          446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT  508 (582)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred             CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            11233445555544210     01    11122359999999999999999999999999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.35  E-value=5e-06  Score=81.21  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcce------EEEeccCCccccccccc--cc------chhcHHHHHHHHHHcC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR------GYVMNLDPAVMTLPFAA--NI------DIRDTIRYKEVMKQFN  134 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~------~~i~~~d~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~  134 (324)
                      +.+++|+|++|+|||||++.|.+...+..+.      +..+..+... ..+.+.  .+      .........++++.++
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~  456 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP-KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR  456 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCC-CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccc-cCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            3679999999999999999999987665432      1111111110 000000  00      0012223456788888


Q ss_pred             CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          135 LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      +.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       457 l~~~~~--~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT  495 (608)
T 3j16_B          457 IDDIID--QEVQHLSGGELQRVAIVLALGIPADIYLIDEPS  495 (608)
T ss_dssp             STTTSS--SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             Chhhhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            765322  334469999999999999999999999999885

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.34  E-value=3.1e-06  Score=82.46  Aligned_cols=110  Identities=13%  Similarity=0.086  Sum_probs=69.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~----------  122 (324)
                      -+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+....          ..+..+.+   .+++          
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~  443 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT  443 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCC
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCC
Confidence            356788999999999999999999999888777666655432110          00000000   0111          


Q ss_pred             HHHHHHHHHHcCCCCC-----Ccc----cccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGPN-----GGI----LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++..++...     .|.    -..-..+|.|++|++..+++...+++++++|.|-
T Consensus       444 ~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpt  505 (578)
T 4a82_A          444 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT  505 (578)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            1123344444433110     011    1112359999999999999999999999999885

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.32  E-value=5.1e-06  Score=81.09  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~---------  123 (324)
                      -+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.....          .+..+.+   .+++.         
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~  445 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDAT  445 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCC
Confidence            3567889999999999999999999998887777776555432110          0000000   01111         


Q ss_pred             -HHHHHHHHHcCCC---------CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -IRYKEVMKQFNLG---------PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ..+.++++..++.         .+.-+-..-..+|.|++|++.++++...+++++++|.|-
T Consensus       446 ~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt  507 (587)
T 3qf4_A          446 DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT  507 (587)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred             HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence             1222333333221         111111222359999999999999999999999999885

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.32  E-value=2.8e-06  Score=81.95  Aligned_cols=106  Identities=18%  Similarity=0.133  Sum_probs=68.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE------EEeccCCccccccccc--ccc-h-----hcHHHHHHHHHH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG------YVMNLDPAVMTLPFAA--NID-I-----RDTIRYKEVMKQ  132 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~------~i~~~d~~~~~~~~~~--~~~-~-----~~~~~~~~~~~~  132 (324)
                      .++.+++|+|++|+|||||++.|++...+..+.+      ..+-.++... ...+.  .+. .     .....+.++++.
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~l~~  388 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD-YEGTVYELLSKIDASKLNSNFYKTELLKP  388 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCC-CSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCC-CCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            4678899999999999999999999876544322      2222222110 00010  000 0     011123445666


Q ss_pred             cCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      +++..  ........+|.|++|++.++.+....++++|+|.|-
T Consensus       389 ~~l~~--~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt  429 (538)
T 1yqt_A          389 LGIID--LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS  429 (538)
T ss_dssp             TTCGG--GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             cCChh--hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            66643  223344579999999999999999999999999985

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.31  E-value=5.9e-07  Score=78.70  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      ..+|++++|+|++.........   +   . +.  ++|.++|+||+|+++......+.+.++                  
T Consensus        20 ~~~D~vl~VvDar~P~~~~~~~---l---~-ll--~k~~iivlNK~DL~~~~~~~~~~~~~~------------------   72 (262)
T 3cnl_A           20 RLVNTVVEVRDARAPFATSAYG---V---D-FS--RKETIILLNKVDIADEKTTKKWVEFFK------------------   72 (262)
T ss_dssp             TTCSEEEEEEETTSTTTTSCTT---S---C-CT--TSEEEEEEECGGGSCHHHHHHHHHHHH------------------
T ss_pred             hhCCEEEEEeeCCCCCcCcChH---H---H-hc--CCCcEEEEECccCCCHHHHHHHHHHHH------------------
Confidence            4579999999998765443211   1   1 11  799999999999998754444433222                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                             .  .+.++ ++||++|.|+++|++.|..
T Consensus        73 -------~--~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 -------K--QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             -------H--TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             -------H--cCCeE-EEECCCCcCHHHHHHHHHH
Confidence                   1  24567 9999999999999887654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.30  E-value=2.5e-06  Score=82.27  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE---------EEeccCC------------cc-------cccccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AV-------MTLPFAAN  117 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~---------~i~~~d~------------~~-------~~~~~~~~  117 (324)
                      ...+.+++|+|++|||||||++.|.+...+..+..         .+.+.+.            .+       ...+....
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~  123 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVK  123 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhh
Confidence            45778899999999999999999999765543321         0000000            00       00000000


Q ss_pred             cchhcH-------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          118 IDIRDT-------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       118 ~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+...       ..+.++++.+++.....  .....+|.|++|++.++.+...+++++|+|.|-
T Consensus       124 ~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~--~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPT  186 (538)
T 1yqt_A          124 GKVIELLKKADETGKLEEVVKALELENVLE--REIQHLSGGELQRVAIAAALLRNATFYFFDEPS  186 (538)
T ss_dssp             SBHHHHHHHHCSSSCHHHHHHHTTCTTTTT--SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             ccHHHHHhhhhHHHHHHHHHHHcCCChhhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            001111       13567888888865322  334569999999999999999999999999885

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.28  E-value=3e-07  Score=80.60  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=22.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .+++++|.+|+|||||+|+|.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5899999999999999999998754

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.27  E-value=6.5e-07  Score=86.82  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..+|+|+|.||+|||||+|+|++..
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            45779999999999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.26  E-value=5.7e-06  Score=80.79  Aligned_cols=108  Identities=17%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEE-----------EeccCC-------------------cccccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDP-------------------AVMTLPFA  115 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~-----------i~~~d~-------------------~~~~~~~~  115 (324)
                      ...+..++|+|++|+|||||++.|.+...+..+.+.           +.+.+.                   .+...+..
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA  179 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence            356788999999999999999999998766544320           000000                   00000000


Q ss_pred             c-----cc-------chhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          116 A-----NI-------DIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       116 ~-----~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .     .+       ..+....+.++++.+++....  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt  249 (608)
T 3j16_B          180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL--KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS  249 (608)
T ss_dssp             CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGG--GSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred             hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchh--CCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence            0     00       001123566788888886532  2334569999999999999999999999999885

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.26  E-value=1.1e-06  Score=71.75  Aligned_cols=24  Identities=29%  Similarity=0.661  Sum_probs=21.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHH
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLV   90 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~   90 (324)
                      .++..++|+|++|||||||++.+.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc
Confidence            467789999999999999999654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.25  E-value=3.7e-06  Score=82.25  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------cccccc---cchhcHH--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAAN---IDIRDTI--------  124 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~---~~~~~~~--------  124 (324)
                      -+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+.....          .+..+.   ..+++.+        
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~  457 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGAT  457 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCC
Confidence            4567899999999999999999999998887777666554431100          000000   0111111        


Q ss_pred             --HHHHHHHHcCCCC-----CCccc----ccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          125 --RYKEVMKQFNLGP-----NGGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       125 --~~~~~~~~~~l~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .+.++++..++..     -.|..    ..-..+|.|++|++.++++...+++++++|.|-
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt  519 (598)
T 3qf4_B          458 DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT  519 (598)
T ss_dssp             TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred             HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence              1122222222210     00111    111359999999999999999999999999885

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.24  E-value=2.8e-06  Score=78.12  Aligned_cols=87  Identities=17%  Similarity=0.077  Sum_probs=53.7

Q ss_pred             CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHH
Q 020549          198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNS  276 (324)
Q Consensus       198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~  276 (324)
                      ++++++|+|+.+.   ...|...+.   .+. .++|+++|+||+|+.+.....+ ..+.+....+               
T Consensus        70 ~~~il~VvD~~d~---~~~~~~~l~---~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~---------------  127 (368)
T 3h2y_A           70 DALVVKIVDIFDF---NGSWLPGLH---RFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK---------------  127 (368)
T ss_dssp             CCEEEEEEETTSH---HHHCCTTHH---HHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH---------------
T ss_pred             CcEEEEEEECCCC---cccHHHHHH---HHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH---------------
Confidence            4799999999752   233333332   121 3789999999999986542111 1111111000               


Q ss_pred             HHHhHHHH-hccCceeeeccccCCChHHHHHHHHHHH
Q 020549          277 LSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       277 ~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                            .. +...+++++||++|.|+++|++.|.+..
T Consensus       128 ------~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 ------QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             ------HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ------HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence                  10 1113789999999999999999997654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=98.24  E-value=6.8e-06  Score=68.59  Aligned_cols=137  Identities=15%  Similarity=0.178  Sum_probs=74.8

Q ss_pred             EEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCC-ccccccccc
Q 020549           71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG-GILTSLNLF  148 (324)
Q Consensus        71 ~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~  148 (324)
                      .|+|. +..|+||||+.-.|.......+.++.++..|+.-...               .++   +....+ .+...   -
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~---------------~~~---~~~~~~~~~~~~---~   61 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT---------------NWS---KAGKAAFDVFTA---A   61 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH---------------HHH---TTSCCSSEEEEC---C
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH---------------HHH---hcCCCCCcEEec---C
Confidence            46666 5799999999999988766667788887776532110               011   111111 01110   1


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                      ...+   ...+......++++|+|||+.....        ....+  ..+|.+++++...... .  .....+..+..+.
T Consensus        62 ~~~l---~~~l~~l~~~yD~viiD~~~~~~~~--------~~~~l--~~ad~viiv~~~~~~~-~--~~~~~~~~l~~~~  125 (206)
T 4dzz_A           62 SEKD---VYGIRKDLADYDFAIVDGAGSLSVI--------TSAAV--MVSDLVIIPVTPSPLD-F--SAAGSVVTVLEAQ  125 (206)
T ss_dssp             SHHH---HHTHHHHTTTSSEEEEECCSSSSHH--------HHHHH--HHCSEEEEEECSCTTT-H--HHHHHHHHHHTTS
T ss_pred             cHHH---HHHHHHhcCCCCEEEEECCCCCCHH--------HHHHH--HHCCEEEEEecCCHHH-H--HHHHHHHHHHHHH
Confidence            1222   2333334557899999999854321        11111  1258989988875433 2  1222222222221


Q ss_pred             --hcCCCeEEEeeccccC
Q 020549          229 --KTRLPLVLAFNKTDVA  244 (324)
Q Consensus       229 --~~~~p~ilv~NK~Dl~  244 (324)
                        ..+.++.+|+|++|..
T Consensus       126 ~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A          126 AYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             CGGGCCEEEEEECSBCTT
T ss_pred             HhCCCCcEEEEEeccCCC
Confidence              2346779999999954

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.23  E-value=9.5e-06  Score=79.29  Aligned_cols=108  Identities=18%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE---------EEeccCC------------cc-------cccccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDP------------AV-------MTLPFAAN  117 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~---------~i~~~d~------------~~-------~~~~~~~~  117 (324)
                      ...+.+++|+|++|+|||||++.|.+...+..+..         .+.+.+.            .+       ...+....
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  193 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVK  193 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCC
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcc
Confidence            35778899999999999999999999865543331         0001000            00       00000000


Q ss_pred             cchhcH-------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          118 IDIRDT-------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       118 ~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ..+.+.       ..+.++++.+++....  -.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       194 ~tv~e~l~~~~~~~~~~~~L~~lgL~~~~--~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT  256 (607)
T 3bk7_A          194 GKVRELLKKVDEVGKFEEVVKELELENVL--DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS  256 (607)
T ss_dssp             SBHHHHHHHTCCSSCHHHHHHHTTCTTGG--GSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred             ccHHHHhhhhHHHHHHHHHHHHcCCCchh--CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            000111       1346788888886432  2334569999999999999999999999999885

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.20  E-value=1.1e-05  Score=85.56  Aligned_cols=137  Identities=14%  Similarity=0.183  Sum_probs=84.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~---------  123 (324)
                      -+++.+|+|+|++|||||||++.|.+...+..+.+.+.+.|.....          .|..+.+   .+|+.         
T Consensus      1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~ 1181 (1321)
T 4f4c_A         1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSS 1181 (1321)
T ss_dssp             ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTT
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCC
Confidence            3567899999999999999999999988887777777665432110          1111100   01211         


Q ss_pred             ---HHHHHHHHHcCCCC-----CCcccccc----cccChHHHHHHHHHHHHhCCCCEEEEeCCCCc-chhhhhhhHHHHH
Q 020549          124 ---IRYKEVMKQFNLGP-----NGGILTSL----NLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIIT  190 (324)
Q Consensus       124 ---~~~~~~~~~~~l~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~  190 (324)
                         ..+.++++..++..     ..|.-+.+    ..||.|++|++.++++...+++++++|.|--. +.    .....+.
T Consensus      1182 ~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~----~tE~~Iq 1257 (1321)
T 4f4c_A         1182 VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT----ESEKVVQ 1257 (1321)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS----HHHHHHH
T ss_pred             CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH----HHHHHHH
Confidence               12344555544421     12222211    24999999999999999999999999988632 21    2233445


Q ss_pred             HHHhccCCcEEEEEEc
Q 020549          191 EAFASTFPTVVTYVVD  206 (324)
Q Consensus       191 ~~~~~~~~d~iv~vvD  206 (324)
                      +.++....+..+++|.
T Consensus      1258 ~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A         1258 EALDRAREGRTCIVIA 1273 (1321)
T ss_dssp             HHHTTTSSSSEEEEEC
T ss_pred             HHHHHHcCCCEEEEec
Confidence            5555544555556553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.15  E-value=4.5e-06  Score=76.75  Aligned_cols=87  Identities=17%  Similarity=0.179  Sum_probs=53.6

Q ss_pred             CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHH
Q 020549          198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNS  276 (324)
Q Consensus       198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~  276 (324)
                      ++++++|+|+++..   ..|...+.  ..+  .++|+++|+||+|+.+.+...+ ..+.+....+               
T Consensus        72 ~~lil~VvD~~d~~---~s~~~~l~--~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~---------------  129 (369)
T 3ec1_A           72 KALVVNIVDIFDFN---GSFIPGLP--RFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE---------------  129 (369)
T ss_dssp             CCEEEEEEETTCSG---GGCCSSHH--HHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH---------------
T ss_pred             CcEEEEEEECCCCC---CchhhHHH--HHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH---------------
Confidence            47999999997644   22222221  111  3789999999999987532111 1111111000               


Q ss_pred             HHHhHHHH-hccCceeeeccccCCChHHHHHHHHHHH
Q 020549          277 LSLALDEF-YKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       277 ~~~~~~~~-~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                            .. +...+++++||++|.|+++|++.|.+..
T Consensus       130 ------~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ------ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             ------TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ------HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence                  00 1113789999999999999999997754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.13  E-value=2.6e-06  Score=76.17  Aligned_cols=82  Identities=9%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHh----HHHHHHhHHHHHHHHhcCccchh
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF----ALEWMQDFEVFQAAISSDHSYTS  271 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~l~~~~~~~~~~~~  271 (324)
                      +..|.+++|+|+..+......+...+   ......++|.++|+||+|+.+...    ...+.+.+.              
T Consensus        85 anvD~v~~V~~~~~p~~~~~~i~r~L---~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~--------------  147 (307)
T 1t9h_A           85 CNVDQAVLVFSAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR--------------  147 (307)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHH---HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH--------------
T ss_pred             HhCCEEEEEEeCCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH--------------
Confidence            56799999999986655554333222   233457899999999999998643    222322221              


Q ss_pred             hHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                                   ..+.+++++||++|.|+++|+..
T Consensus       148 -------------~~g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          148 -------------NIGYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             -------------HHTCCEEECCHHHHTTCTTTGGG
T ss_pred             -------------hCCCeEEEEecCCCCCHHHHHhh
Confidence                         12468999999999998877654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.10  E-value=6.1e-06  Score=67.83  Aligned_cols=29  Identities=21%  Similarity=0.331  Sum_probs=25.7

Q ss_pred             ccChHHHHHHHHHHH-----HhCCCCEEEEeCCC
Q 020549          147 LFTTKFDEVISLIER-----RADHLDYVLVDTPG  175 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~-----~~~~~~~~liDtpG  175 (324)
                      .+|.|+++++..+.+     ...+++++|+|.+|
T Consensus        76 ~lSgG~~qr~~la~aa~~~~l~~~p~llilDEig  109 (178)
T 1ye8_A           76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIG  109 (178)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred             CcCHHHHHHHHHHhhccccccccCCCEEEEeCCC
Confidence            488999999999996     78899999999965

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.02  E-value=1.5e-05  Score=84.51  Aligned_cols=110  Identities=13%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcHH--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDTI--------  124 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~~--------  124 (324)
                      -+++.+++|+|++|||||||++.|.+...+..+.+.+.+.+....          ..+..+.+   .+++.+        
T Consensus       413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~  492 (1284)
T 3g5u_A          413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVT  492 (1284)
T ss_dssp             ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCC
Confidence            356789999999999999999999998877766666654432110          00100000   112111        


Q ss_pred             --HHHHHHHHcCC---------CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          125 --RYKEVMKQFNL---------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       125 --~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        .+.++++..++         +.+.-+-..-..+|.|++|++.++++...+++++|+|.|-
T Consensus       493 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt  554 (1284)
T 3g5u_A          493 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT  554 (1284)
T ss_dssp             HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence              12223332221         1111111112359999999999999999999999999885

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=98.01  E-value=5e-05  Score=65.18  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      +|+|.|..|+||||+.-.|.......++++.++..|+.
T Consensus         2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   39 (254)
T 3kjh_A            2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD   39 (254)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            47789999999999999998887777888988888874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.01  E-value=1.6e-05  Score=84.53  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=70.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC-------------------cccccccccccch----hc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------------------AVMTLPFAANIDI----RD  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~-------------------~~~~~~~~~~~~~----~~  122 (324)
                      -+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.|.                   ...+-+...++..    .+
T Consensus       441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~  520 (1321)
T 4f4c_A          441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT  520 (1321)
T ss_dssp             ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred             ecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccch
Confidence            356788999999999999999999999888777766654432                   1111111111100    11


Q ss_pred             HHHHHHHHHHcCC---------CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNL---------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++..++         +.+.-+-..=..+|.|++|++.++++...+++++++|.|-
T Consensus       521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~t  582 (1321)
T 4f4c_A          521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT  582 (1321)
T ss_dssp             HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccc
Confidence            2233444544332         1111011111248999999999999999999999999885

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.98  E-value=4.4e-05  Score=77.87  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC-----CcceEEEeccCC--cccccccccccc--hh-cHHHHHHHHHHcCCC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDP--AVMTLPFAANID--IR-DTIRYKEVMKQFNLG  136 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-----~~~~~~i~~~d~--~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~  136 (324)
                      .++.+++|+|++|+|||||++.|.+....     .......+..++  .....+....+.  .. ....+.++++.+++.
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~  538 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT  538 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence            45778999999999999999999964221     001111111111  000000000000  00 023456788888874


Q ss_pred             CCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          137 PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .. -.......+|.|++|++.++.+...+++++|+|.|-
T Consensus       539 ~~-~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT  576 (986)
T 2iw3_A          539 DE-MIAMPISALSGGWKMKLALARAVLRNADILLLDEPT  576 (986)
T ss_dssp             HH-HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred             hh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            21 012233469999999999999999999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.95  E-value=1.1e-05  Score=82.19  Aligned_cols=51  Identities=12%  Similarity=0.116  Sum_probs=38.9

Q ss_pred             HHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .+.++++.+++............+|.|++|++.++.+...+++++|+|.|-
T Consensus       879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT  929 (986)
T 2iw3_A          879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT  929 (986)
T ss_dssp             HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGG
T ss_pred             HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence            356678888875321112234469999999999999999999999999984

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.89  E-value=1.4e-06  Score=78.24  Aligned_cols=108  Identities=14%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCc--ceEEEeccCCccccccccccc------c---hhcHHHHHHHHHHcC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAVMTLPFAANI------D---IRDTIRYKEVMKQFN  134 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~  134 (324)
                      ..++..|+|+|++|||||||++.|.+...+..  ..+.++..|......+....+      +   ..+...+.+.++.++
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~  166 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK  166 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence            45778999999999999999999998765432  233343333322111100000      0   012234455666665


Q ss_pred             CCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          135 LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                       ....  ......+|.++++++..+.+....++++|+|-|-.
T Consensus       167 -~~~~--~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~  205 (312)
T 3aez_A          167 -SGSD--YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNV  205 (312)
T ss_dssp             -TTCS--CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTT
T ss_pred             -CCcc--cCCcccCChhhhhhhhhHHHhccCCCEEEECCccc
Confidence             2111  12223577777776655444556778888888854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.89  E-value=4.7e-06  Score=78.74  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcc-e-EEEeccCCc--cccccccc-------ccchhcHH-----------
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-R-GYVMNLDPA--VMTLPFAA-------NIDIRDTI-----------  124 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~-~-~~i~~~d~~--~~~~~~~~-------~~~~~~~~-----------  124 (324)
                      ..+.+++|+|++|||||||++.|++...+.++ . +.+.+ ++.  +...+...       ..++++.+           
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~  214 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATL  214 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhhcccccccCcch
Confidence            35778999999999999999999998766666 5 54433 221  11111110       00111100           


Q ss_pred             --HHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHH--HhCCCCE----EEEeCCC
Q 020549          125 --RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER--RADHLDY----VLVDTPG  175 (324)
Q Consensus       125 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~liDtpG  175 (324)
                        .+.++++.+++....    ....+|.|++|++..+.+  ...++++    +|+|+|+
T Consensus       215 ~~~~~~ll~~~gl~~~~----~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP  269 (460)
T 2npi_A          215 LHNKQPMVKNFGLERIN----ENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS  269 (460)
T ss_dssp             SCCBCCEECCCCSSSGG----GCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred             HHHHHHHHHHhCCCccc----chhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence              001112222222111    134689999999999999  8889999    9999944

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.88  E-value=5.2e-05  Score=69.07  Aligned_cols=82  Identities=15%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHh---HHHHHHhHHHHHHHHhcCccchhh
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEF---ALEWMQDFEVFQAAISSDHSYTST  272 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~  272 (324)
                      +..|.+++| |+.........+.   ..+......++|.+||+||+|+.+...   ...+...+.               
T Consensus       129 anvD~v~iv-~a~~P~~~~~~i~---r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~---------------  189 (358)
T 2rcn_A          129 ANIDQIVIV-SAILPELSLNIID---RYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR---------------  189 (358)
T ss_dssp             ECCCEEEEE-EESTTTCCHHHHH---HHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH---------------
T ss_pred             hcCCEEEEE-EeCCCCCCHHHHH---HHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH---------------
Confidence            456888865 5544322222221   112223456899999999999998753   112221111               


Q ss_pred             HHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          273 LTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       273 l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                                  ..+.+++++||++|.|+++|...+
T Consensus       190 ------------~~G~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          190 ------------NIGYRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             ------------TTTCCEEECBTTTTBTHHHHHHHH
T ss_pred             ------------hCCCcEEEEecCCCcCHHHHHHhc
Confidence                        124689999999999999987643

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=97.88  E-value=0.00016  Score=63.45  Aligned_cols=161  Identities=16%  Similarity=0.279  Sum_probs=82.4

Q ss_pred             CCcEEEEEcc-CCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccc----cccchhcHH----HHHHHHHH-----c
Q 020549           68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA----ANIDIRDTI----RYKEVMKQ-----F  133 (324)
Q Consensus        68 ~~~~v~iiG~-~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~----~~~~~~~~-----~  133 (324)
                      ....|+|.|. +|+||||+.-.|.......+.++.+++.|+........    ...++.+.+    ...+++..     +
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l  160 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL  160 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence            3456788875 89999999999887766667788888877543221110    001111111    11111111     1


Q ss_pred             CCCCCCcccccc-cc-cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC
Q 020549          134 NLGPNGGILTSL-NL-FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA  211 (324)
Q Consensus       134 ~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~  211 (324)
                      .+-+.+...... +. -+..+.+.+..+.   ..++++|+|||+....    .....+..     .+|.+++|+..... 
T Consensus       161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~---~~yD~VIIDtpp~~~~----~d~~~l~~-----~aD~vilVv~~~~~-  227 (271)
T 3bfv_A          161 DVLTSGPIPPNPSELITSRAFANLYDTLL---MNYNFVIIDTPPVNTV----TDAQLFSK-----FTGNVVYVVNSENN-  227 (271)
T ss_dssp             EEECCCSCCSCHHHHHTSHHHHHHHHHHH---HHCSEEEEECCCTTTC----SHHHHHHH-----HHCEEEEEEETTSC-
T ss_pred             EEEECCCCCCCHHHHhChHHHHHHHHHHH---hCCCEEEEeCCCCchH----HHHHHHHH-----HCCEEEEEEeCCCC-
Confidence            111111111100 00 1334444444443   4679999999985432    11111211     24889999987442 


Q ss_pred             CchhHHHhHHHHHHHHhhcCCCeE-EEeeccccCC
Q 020549          212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ  245 (324)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~  245 (324)
                       .....   ......+...+.+++ +|+|++|...
T Consensus       228 -~~~~~---~~~~~~l~~~~~~~~GvVlN~~~~~~  258 (271)
T 3bfv_A          228 -NKDEV---KKGKELIEATGAKLLGVVLNRMPKDK  258 (271)
T ss_dssp             -CHHHH---HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred             -cHHHH---HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence             22222   222345556677776 8999998643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.84  E-value=3.6e-05  Score=81.55  Aligned_cols=110  Identities=14%  Similarity=0.128  Sum_probs=68.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc----------cccccccc---chhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANI---DIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~---~~~~~---------  123 (324)
                      .+++.+++|+|++|+|||||++.|.+...+..+.+.+.+.+....          -.+..+.+   .+++.         
T Consensus      1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~ 1135 (1284)
T 3g5u_A         1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135 (1284)
T ss_dssp             ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCC
Confidence            456789999999999999999999998877766666655443210          01111100   01111         


Q ss_pred             ---HHHHHHHHHcCCCC-----CCcccc----cccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 ---IRYKEVMKQFNLGP-----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ---~~~~~~~~~~~l~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         ..+.+.++..++..     ..|.-+    .-..+|.|++|++.++++...+++++++|.|-
T Consensus      1136 ~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpT 1199 (1284)
T 3g5u_A         1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT 1199 (1284)
T ss_dssp             CCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCS
T ss_pred             CCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence               11222333322210     111111    11359999999999999999999999999885

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=97.83  E-value=0.00013  Score=63.02  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=30.9

Q ss_pred             cEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           70 VIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        70 ~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ..|+|+| ..|+||||+.-.|.......++++.++..|+.
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG   42 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            3466655 69999999999998877767788888888874

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.83  E-value=2.6e-05  Score=65.23  Aligned_cols=91  Identities=8%  Similarity=0.015  Sum_probs=55.0

Q ss_pred             CcEEEEEEcCCCCCCchhHHHhHHHHHH-HHhh----cCCCeEEEeecc-ccCChHhHHHHHHhHHHHHHHHhcCccchh
Q 020549          198 PTVVTYVVDTPRSANPMTFMSNMLYACS-ILYK----TRLPLVLAFNKT-DVAQHEFALEWMQDFEVFQAAISSDHSYTS  271 (324)
Q Consensus       198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~-~~~~----~~~p~ilv~NK~-Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~  271 (324)
                      .|.+|||||+.+.-.. . ...++..+. .+..    .+.|++|..||. |+...-...++.+.+.              
T Consensus       126 TdglIfVVDSsD~~R~-e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~--------------  189 (227)
T 3l82_B          126 VDGFIYVANAEAHKRH-E-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--------------  189 (227)
T ss_dssp             CSEEEEEEECBTTCCC-C-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred             CCEEEEEeccccHhHH-H-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC--------------
Confidence            5899999999765322 1 222222111 2221    468999999996 6754322222222221              


Q ss_pred             hHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                             .-  .......|.+|||++|+|+.+-+++|.+.+.
T Consensus       190 -------L~--~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          190 -------LN--LLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             -------GG--GGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             -------Cc--CCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence                   00  1112357899999999999999999987653

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=97.80  E-value=0.00015  Score=64.52  Aligned_cols=160  Identities=16%  Similarity=0.207  Sum_probs=82.1

Q ss_pred             CCcEEEEEcc-CCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccc----ccchhcHH----HHHHHHHH-----c
Q 020549           68 KPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA----NIDIRDTI----RYKEVMKQ-----F  133 (324)
Q Consensus        68 ~~~~v~iiG~-~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~----~~~~~~~~-----~  133 (324)
                      .+..|+|+|. +|+||||+.-.|.......+.++.++..|+........-    ..++.+.+    ...+++..     +
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l  182 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF  182 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence            3456888885 899999999998877666677888887776322211100    01111111    11111111     1


Q ss_pred             CCCCCCccccccc--ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC
Q 020549          134 NLGPNGGILTSLN--LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA  211 (324)
Q Consensus       134 ~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~  211 (324)
                      .+-+.+.......  .-+..+.+.+..+.   ..++++|+|||+....    ....     +....+|.+++|+......
T Consensus       183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~---~~yD~VIIDtpp~~~~----~d~~-----~l~~~ad~vilV~~~~~~~  250 (299)
T 3cio_A          183 DVITRGQVPPNPSELLMRDRMRQLLEWAN---DHYDLVIVDTPPMLAV----SDAA-----VVGRSVGTSLLVARFGLNT  250 (299)
T ss_dssp             EEECCCSCCSCHHHHHTSHHHHHHHHHHH---HHCSEEEEECCCTTTC----THHH-----HHGGGCSEEEEEEETTTSC
T ss_pred             EEEECCCCCCCHHHHhCHHHHHHHHHHHH---hCCCEEEEcCCCCchh----HHHH-----HHHHHCCEEEEEEcCCCCh
Confidence            1111111111000  01334444444443   4689999999986432    0111     1123468999998765432


Q ss_pred             CchhHHHhHHHHHHHHhhcCCCeE-EEeeccccC
Q 020549          212 NPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVA  244 (324)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~  244 (324)
                      .  ....   ..+..+...+.+++ +|+|++|..
T Consensus       251 ~--~~~~---~~~~~l~~~~~~~~GvVlN~~~~~  279 (299)
T 3cio_A          251 A--KEVS---LSMQRLEQAGVNIKGAILNGVIKR  279 (299)
T ss_dssp             T--THHH---HHHHHHHHTTCCCCCEEEEECCCC
T ss_pred             H--HHHH---HHHHHHHhCCCCeEEEEEeCCccC
Confidence            2  2222   22234445566544 789999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.77  E-value=0.0003  Score=59.03  Aligned_cols=129  Identities=13%  Similarity=0.066  Sum_probs=71.5

Q ss_pred             EEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           72 IIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        72 v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      |+++ +..|+||||+.-.|.......+ ++.++..|+.-..         .      .++..-.+..        ..+..
T Consensus         3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~---------~------~~~~~~~l~~--------~vi~~   58 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA---------T------GWGKRGSLPF--------KVVDE   58 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH---------H------HHHHHSCCSS--------EEEEG
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH---------H------HHhcCCCCCc--------ceeCH
Confidence            5554 6899999999999988776667 7888777653210         0      1111100000        11111


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                      .      .+......++++|+|||+. ....        ....+  ..+|.+++++.....     ........+..+..
T Consensus        59 ~------~l~~l~~~yD~viiD~p~~~~~~~--------~~~~l--~~aD~viiv~~~~~~-----~~~~~~~~~~~l~~  117 (209)
T 3cwq_A           59 R------QAAKYAPKYQNIVIDTQARPEDED--------LEALA--DGCDLLVIPSTPDAL-----ALDALMLTIETLQK  117 (209)
T ss_dssp             G------GHHHHGGGCSEEEEEEECCCSSSH--------HHHHH--HTSSEEEEEECSSHH-----HHHHHHHHHHHHHH
T ss_pred             H------HHHHhhhcCCEEEEeCCCCcCcHH--------HHHHH--HHCCEEEEEecCCch-----hHHHHHHHHHHHHh
Confidence            1      1122245789999999985 3321        11111  236898888876321     11111222233333


Q ss_pred             -cCCCeEEEeeccccCC
Q 020549          230 -TRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       230 -~~~p~ilv~NK~Dl~~  245 (324)
                       .+.++.+|+|++|...
T Consensus       118 ~~~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A          118 LGNNRFRILLTIIPPYP  134 (209)
T ss_dssp             TCSSSEEEEECSBCCTT
T ss_pred             ccCCCEEEEEEecCCcc
Confidence             2677889999999764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.77  E-value=9.5e-06  Score=72.47  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~   96 (324)
                      ..+..++|+|++|||||||+|+|.+.....
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence            356789999999999999999999875543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.75  E-value=3.6e-05  Score=69.58  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~  104 (324)
                      .+..++|+|++|+|||||++.|++...+..+.+++.+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~  206 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  206 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence            3557999999999999999999999877767666644

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=97.75  E-value=0.00016  Score=61.96  Aligned_cols=41  Identities=10%  Similarity=0.178  Sum_probs=32.7

Q ss_pred             CCcEEEEEc-cCCCcHHHHHHHHHhcccCC-cceEEEeccCCc
Q 020549           68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPA  108 (324)
Q Consensus        68 ~~~~v~iiG-~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d~~  108 (324)
                      ++..|++++ ..|+||||+.-.|....... ++++.++..|+.
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            345566664 68999999999998887776 888999888865

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=97.74  E-value=0.00033  Score=61.86  Aligned_cols=160  Identities=14%  Similarity=0.169  Sum_probs=82.5

Q ss_pred             CCcEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHH-cCCC--------C
Q 020549           68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ-FNLG--------P  137 (324)
Q Consensus        68 ~~~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~--------~  137 (324)
                      .+..|+|+| .+|+||||+.-.|.......+.++.++..|+.-......  +++.....+.+++.. ..+.        +
T Consensus        91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~--~~~~~~~gl~~~l~~~~~~~~~i~~~~~~  168 (286)
T 3la6_A           91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHEL--LGTNNVNGLSEILIGQGDITTAAKPTSIA  168 (286)
T ss_dssp             TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHH--HTCCCTTCHHHHHHTSSCTTTTCEECSST
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHH--hCCCCCCCHHHHccCCCCHHHheeccCCC
Confidence            345677776 589999999999987766667788888777643221110  000000111112110 0000        0


Q ss_pred             CCccccc------c-c-ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC
Q 020549          138 NGGILTS------L-N-LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR  209 (324)
Q Consensus       138 ~~~~~~~------~-~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~  209 (324)
                      +..++..      . + .-+..+.+.+..+.   ..++++|+|||+....    ...     ......+|.+|+|+....
T Consensus       169 ~l~vl~~g~~~~~~~ell~~~~l~~ll~~l~---~~yD~VIIDtpp~~~~----~da-----~~l~~~aD~vllVv~~~~  236 (286)
T 3la6_A          169 KFDLIPRGQVPPNPSELLMSERFAELVNWAS---KNYDLVLIDTPPILAV----TDA-----AIVGRHVGTTLMVARYAV  236 (286)
T ss_dssp             TEEEECCCSCCSCHHHHHTSHHHHHHHHHHH---HHCSEEEEECCCTTTC----THH-----HHHTTTCSEEEEEEETTT
T ss_pred             CEEEEeCCCCCCCHHHHhchHHHHHHHHHHH---hCCCEEEEcCCCCcch----HHH-----HHHHHHCCeEEEEEeCCC
Confidence            0000000      0 0 01234444444443   4679999999986432    001     112345799999998754


Q ss_pred             CCCchhHHHhHHHHHHHHhhcCCC-eEEEeeccccCCh
Q 020549          210 SANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVAQH  246 (324)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~  246 (324)
                      ..  ....   ...+..+...+.+ +-+|+||+|....
T Consensus       237 ~~--~~~~---~~~~~~l~~~g~~~~GvVlN~v~~~~~  269 (286)
T 3la6_A          237 NT--LKEV---ETSLSRFEQNGIPVKGVILNSIFRRAS  269 (286)
T ss_dssp             SB--HHHH---HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred             Cc--HHHH---HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence            22  2222   2223445555555 4579999986543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.70  E-value=4.6e-05  Score=66.53  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEeccC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLD  106 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~~d  106 (324)
                      .++..++|+|++|||||||++.|++...+. .+.+.+.+.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~   63 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP   63 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence            356789999999999999999999987654 5666665544

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.69  E-value=3.9e-05  Score=68.45  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      .+..++++|++|||||||+|.|.+...+..+.+
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i  200 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  200 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence            356799999999999999999999876654433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.69  E-value=4.2e-05  Score=68.23  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=24.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI   98 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~   98 (324)
                      .+..++++|++|||||||+|+|. ...+..+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G  193 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEELRTQ  193 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence            45689999999999999999999 6554433

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.68  E-value=6.9e-05  Score=70.23  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +..+|+|+|++++|||||+|+|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4567999999999999999999986

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=97.66  E-value=0.00071  Score=58.73  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             CcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           69 PVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        69 ~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      +..|+|+ |..|+||||+.-.|.......++++.++..|+.-
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            4456665 5789999999999987766667788888877654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.65  E-value=2.4e-05  Score=71.25  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=25.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc-CCc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRN   97 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~-~~~   97 (324)
                      .+..++|+|++|||||||+|.|++... ...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~  244 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILT  244 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccccccc
Confidence            456899999999999999999999765 443

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=97.65  E-value=0.0003  Score=60.91  Aligned_cols=41  Identities=29%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             CCcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        68 ~~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      +...|+++ +..|+||||+.-.|.......++++.++..|+.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   46 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ   46 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            44567777 578999999999998876666778888887764

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=97.63  E-value=0.00022  Score=63.13  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             cEEEEEc---cCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           70 VIIIVVG---MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        70 ~~v~iiG---~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      ..|+|++   ..|+||||+.-.|.......++++.++..|+.-
T Consensus        35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~   77 (298)
T 2oze_A           35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA   77 (298)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            3466665   999999999999987766667788888888753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.61  E-value=0.00014  Score=61.42  Aligned_cols=28  Identities=39%  Similarity=0.484  Sum_probs=24.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++..++|+|++|||||||++.|++...
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4677899999999999999999998543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.61  E-value=0.00021  Score=70.84  Aligned_cols=48  Identities=13%  Similarity=0.127  Sum_probs=34.2

Q ss_pred             HHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCC---CEEEEeCCC
Q 020549          127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPG  175 (324)
Q Consensus       127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~liDtpG  175 (324)
                      .+.+..+++... ..-.....+|.|++|++.++++....+   +++|+|.|-
T Consensus       524 ~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt  574 (670)
T 3ux8_A          524 LETLYDVGLGYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT  574 (670)
T ss_dssp             HHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred             HHHHHHcCCchh-hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence            355666666432 112233469999999999999997665   599999884

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.61  E-value=6.9e-05  Score=68.36  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~   96 (324)
                      .+..|+|+|++|||||||++.|++...+.
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            45589999999999999999999886654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.61  E-value=2.9e-05  Score=62.43  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=27.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      ..+..++|+|++|||||||++.|++.. +..+.+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V   63 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV   63 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence            467789999999999999999999987 554443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.60  E-value=0.00012  Score=64.29  Aligned_cols=91  Identities=8%  Similarity=0.014  Sum_probs=55.6

Q ss_pred             CcEEEEEEcCCCCCCchhHHHhHHHHH-HHHh----hcCCCeEEEeec-cccCChHhHHHHHHhHHHHHHHHhcCccchh
Q 020549          198 PTVVTYVVDTPRSANPMTFMSNMLYAC-SILY----KTRLPLVLAFNK-TDVAQHEFALEWMQDFEVFQAAISSDHSYTS  271 (324)
Q Consensus       198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~-~~~~----~~~~p~ilv~NK-~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~  271 (324)
                      .|.+|||||+.+.....  ...++..+ ..+.    ..+.|++|..|| -|+...-...++.+.+.              
T Consensus       211 tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~--------------  274 (312)
T 3l2o_B          211 VDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH--------------  274 (312)
T ss_dssp             CSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT--------------
T ss_pred             CCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC--------------
Confidence            48999999997654322  22222111 1121    257899999997 58765422222222221              


Q ss_pred             hHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          272 TLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                             .-  .......|.+|||++|+|+.+-++.|.+.+.
T Consensus       275 -------L~--~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          275 -------LN--LLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             -------GG--GGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             -------Cc--cCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence                   10  1112356899999999999999999988763

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.58  E-value=0.00034  Score=60.86  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             CCCcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        67 ~~~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      +++..|+|+ |..|+||||+.-.|..... .++++.++..|+.
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~   66 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ   66 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            345566665 4799999999999988776 7888888888764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.57  E-value=0.00071  Score=66.96  Aligned_cols=45  Identities=16%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             HHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCC--EEEEeCCC
Q 020549          130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPG  175 (324)
Q Consensus       130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~liDtpG  175 (324)
                      ++.+++.... .......+|.|++|++.++++....++  ++|+|.|-
T Consensus       186 l~~~gL~~~~-~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt  232 (670)
T 3ux8_A          186 LQNVGLDYLT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS  232 (670)
T ss_dssp             HHHTTCTTCC-TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred             HHHcCCchhh-hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence            5566664321 112334699999999999999998887  99999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.56  E-value=0.00035  Score=55.45  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      .+..++|+|++|+|||||++.+.+....
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3456999999999999999999987544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.52  E-value=0.0017  Score=54.71  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=27.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      ++..++|+|++|+|||||++.|++.....+..+.++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~   57 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV   57 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            566799999999999999999997655444444443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.47  E-value=6.4e-05  Score=63.02  Aligned_cols=29  Identities=17%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..++..++|+|++|||||||++.|.+...
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45677899999999999999999998753

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.44  E-value=7.6e-05  Score=61.15  Aligned_cols=26  Identities=15%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..++|+|++|||||||++.|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45679999999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.43  E-value=8e-05  Score=61.97  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+..++|+|++|||||||++.|.+..
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            46679999999999999999999874

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=97.42  E-value=0.0016  Score=56.20  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             EEEE-EccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           71 IIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        71 ~v~i-iG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      .|+| -+..|+||||+.-.|.......+.++.++..|+.
T Consensus         4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (263)
T 1hyq_A            4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   42 (263)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4555 4579999999999998776666778888887764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.42  E-value=6.2e-05  Score=62.76  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..++|+|++|||||||++.|.+..
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4569999999999999999999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.41  E-value=0.0024  Score=57.66  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      -.++-.++|.|+||+|||||+..++......+..+.++
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f   80 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF   80 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            34566799999999999999999887654444455443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.37  E-value=9.1e-05  Score=62.13  Aligned_cols=29  Identities=24%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      .++.+|+|+|++|||||||++.|.+...+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46788999999999999999999987654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.37  E-value=9.8e-05  Score=61.85  Aligned_cols=28  Identities=36%  Similarity=0.456  Sum_probs=24.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++..|+|+|++|||||||++.|.+...
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4667899999999999999999998643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.36  E-value=0.00011  Score=60.52  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..|+|+|++|||||||++.|.+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            45678999999999999999999986

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.36  E-value=0.0018  Score=56.17  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      +|+|.|..|+||||+.-.|.......++++.++..|+.-
T Consensus         3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~   41 (269)
T 1cp2_A            3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence            467789999999999999988776677888888888754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.35  E-value=0.00011  Score=62.45  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=24.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+..++|+|++|||||||++.|++...
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4677899999999999999999998765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.35  E-value=9.1e-05  Score=62.74  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=23.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..++|+|++|||||||++.|.+..
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            456779999999999999999999976

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=97.35  E-value=0.00061  Score=57.91  Aligned_cols=39  Identities=28%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             cEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           70 VIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        70 ~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ..|+|+| ..|+||||+.-.|.......++++.++..|+.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~   42 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence            3466654 68999999999998876666778888887764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.31  E-value=0.001  Score=67.75  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=48.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC-------CcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-------RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG  139 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  139 (324)
                      ..+..++|+|++|+|||||++.+......       ......+.-    +..  .-+.++..+                 
T Consensus       671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~----~d~--i~~~ig~~d-----------------  727 (918)
T 3thx_B          671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGI----VDG--IFTRMGAAD-----------------  727 (918)
T ss_dssp             TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEEC----CSE--EEEEC---------------------
T ss_pred             CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhH----HHH--HHHhCChHH-----------------
Confidence            34678999999999999999987543111       111111100    000  000111111                 


Q ss_pred             cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCc
Q 020549          140 GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI  177 (324)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~  177 (324)
                      .+......|+.++.++...+.. ...+.++|+|.||-.
T Consensus       728 ~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~G  764 (918)
T 3thx_B          728 NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRG  764 (918)
T ss_dssp             ------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTT
T ss_pred             HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCC
Confidence            1111223477888888877776 568899999999843

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.27  E-value=0.0016  Score=66.51  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHH
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRL   89 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l   89 (324)
                      .+..++|+|++|+|||||++.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4568999999999999999998

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.26  E-value=0.00019  Score=58.59  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d  106 (324)
                      ...++|+|++|+|||||+++|++.....+..+.++..+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~   43 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   43 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence            46799999999999999999998755445555554443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.25  E-value=0.00022  Score=63.68  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEe
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVM  103 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~  103 (324)
                      .++..|+|+|++|||||||++.|.+...  +..+.+.++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi  116 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI  116 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence            4678899999999999999999998755  455555553

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.25  E-value=0.0007  Score=56.68  Aligned_cols=25  Identities=32%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHh
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      .++..++|+|++|+|||||+..|+.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999998

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.25  E-value=0.00017  Score=60.43  Aligned_cols=28  Identities=21%  Similarity=0.425  Sum_probs=24.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++..|+|+|++|||||||++.|.+...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3567899999999999999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.24  E-value=0.0011  Score=61.33  Aligned_cols=28  Identities=11%  Similarity=-0.128  Sum_probs=25.3

Q ss_pred             cChHHHHHHHHHHHHhCCC--CEEEEeCCC
Q 020549          148 FTTKFDEVISLIERRADHL--DYVLVDTPG  175 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~--~~~liDtpG  175 (324)
                      +|.|+++++.++......+  +++|+|.|-
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt  325 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVD  325 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            6999999999999888888  999999884

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.23  E-value=0.00021  Score=57.96  Aligned_cols=40  Identities=28%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ...++|+|++|+|||||+.+|+......+..+.++..++.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            4579999999999999999999876666666777665543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.23  E-value=0.00019  Score=59.74  Aligned_cols=27  Identities=15%  Similarity=0.481  Sum_probs=23.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..|+|+|++|||||||+++|++..
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            356679999999999999999999764

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=97.23  E-value=0.0011  Score=58.39  Aligned_cols=38  Identities=29%  Similarity=0.340  Sum_probs=30.2

Q ss_pred             cEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        70 ~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ..|+|+ +..|+||||+.-.|.......++++.++..|+
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~   43 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            356666 57999999999999887766677888877776

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.22  E-value=0.00079  Score=59.02  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..++|+|++|+|||||+..|++..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            466789999999999999999998753

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.21  E-value=0.083  Score=47.15  Aligned_cols=39  Identities=23%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ...+++.|..|+||||+.-.|.......++++.++..|+
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            356777789999999999999877666678888888887

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.20  E-value=0.0002  Score=59.54  Aligned_cols=27  Identities=37%  Similarity=0.577  Sum_probs=23.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..|+|+|++|||||||++.|.+..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456789999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.18  E-value=0.00022  Score=59.23  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..|+|+|++|||||||++.|.+..
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.17  E-value=0.00024  Score=59.22  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d  106 (324)
                      .++..|+|+|++|+|||||++.|.+.....++.+.+.+.|
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            4567899999999999999999988755445555554444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.16  E-value=0.0034  Score=60.24  Aligned_cols=96  Identities=18%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcce-EEEeccCCcccccccccccchhcHH-----HHHHHHHHcCCCCCCc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR-GYVMNLDPAVMTLPFAANIDIRDTI-----RYKEVMKQFNLGPNGG  140 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~  140 (324)
                      .++..++|+|++|+|||||++.|++.....+.. .++...++..         .+....     ...++ ...++..-  
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~---------~l~~~~~~~g~~~~~~-~~~g~~~~--  346 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA---------QLLRNAYSWGMDFEEM-ERQNLLKI--  346 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH---------HHHHHHHTTSCCHHHH-HHTTSEEE--
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH---------HHHHHHHHcCCCHHHH-HhCCCEEE--
Confidence            466789999999999999999999876654432 2333222100         000000     01111 11111100  


Q ss_pred             ccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .......+|.+..+++-.+.+...+++++++| |=
T Consensus       347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~  380 (525)
T 1tf7_A          347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SL  380 (525)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH
T ss_pred             EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch
Confidence            11122347999999998888888899999999 73

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.15  E-value=0.00018  Score=60.50  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=25.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI   98 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~   98 (324)
                      .+..++|+|++|||||||++.|++. .+..+
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G   50 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK   50 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence            4567999999999999999999998 55433

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.08  E-value=0.00043  Score=62.13  Aligned_cols=41  Identities=24%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccC--CcceEEEeccC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLD  106 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~--~~~~~~i~~~d  106 (324)
                      ...+..|+|+|++|||||||++.|.+....  .++.+.++..|
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D  131 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD  131 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence            346788999999999999999999876542  33445554444

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.08  E-value=0.00036  Score=56.45  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+..|+|+|++||||||+++.|.+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            346789999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.07  E-value=0.00043  Score=64.42  Aligned_cols=41  Identities=27%  Similarity=0.208  Sum_probs=32.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ..+..++|+|++|||||||++.|++...+..+.+.+.+.+.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            35567999999999999999999998776666666655443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.07  E-value=0.00028  Score=56.89  Aligned_cols=25  Identities=32%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|+|++|||||||.+.|.+..
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999998863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.07  E-value=0.00031  Score=62.55  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++..++|+|++|+|||||++.|.+..
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3567789999999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.05  E-value=0.00029  Score=57.89  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=20.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHh
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      ..++|+|++|||||||++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999986

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.05  E-value=0.0002  Score=61.02  Aligned_cols=28  Identities=32%  Similarity=0.501  Sum_probs=18.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHH-hcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLV-CHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~-~~~   93 (324)
                      ..++..++|+|++|||||||++.|. +..
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3456789999999999999999999 764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.04  E-value=0.00034  Score=60.16  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..|+|+|++|||||||++.|.+..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            466789999999999999999998853

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=97.04  E-value=0.0067  Score=53.20  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      ..|+|.|..|+||||+.-.|.......++++.++..|+.-
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~   42 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3577789999999999999988766667888888888753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.03  E-value=0.00048  Score=62.96  Aligned_cols=36  Identities=31%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      .+..++|+|++|||||||++.|++...+..+.+++.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie  209 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE  209 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence            566799999999999999999999877766666664

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.01  E-value=0.0018  Score=58.81  Aligned_cols=27  Identities=37%  Similarity=0.469  Sum_probs=24.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+..+.|+|++|+|||||++.|++..
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.01  E-value=0.00032  Score=58.04  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .+++|+|++|+|||||++.|++...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3689999999999999999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.99  E-value=0.00043  Score=57.50  Aligned_cols=28  Identities=36%  Similarity=0.470  Sum_probs=24.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++..|+|+|++|||||||.+.|.+...
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678899999999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.99  E-value=0.0004  Score=59.74  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=21.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHh
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      ++.+|+|+|++|||||||++.|..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999993

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.99  E-value=0.00064  Score=61.72  Aligned_cols=40  Identities=15%  Similarity=0.054  Sum_probs=32.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL  105 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~  105 (324)
                      ..++.+++|+|++|+|||||++.|++...+..+.+.+.+.
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~  107 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE  107 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence            3567889999999999999999999997766555555443

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=96.97  E-value=0.15  Score=45.97  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ....+++.|..|+||||+.-.|.......++++.++..|+.
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~   65 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA   65 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            34556777899999999999988776666788888888773

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.91  E-value=0.00046  Score=57.55  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|++|||||||+++|....
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            56679999999999999999998764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.89  E-value=0.012  Score=52.37  Aligned_cols=37  Identities=11%  Similarity=0.175  Sum_probs=26.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      -.++-.+.|.|+||+|||||+..++......+..+.+
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~  101 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNL  101 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            3456789999999999999999988654433333333

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=96.87  E-value=0.02  Score=51.92  Aligned_cols=40  Identities=30%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA  108 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~  108 (324)
                      ...+++-|..|+||||+.-.|.-...  ..++++.++.-|+.
T Consensus        18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~   59 (354)
T 2woj_A           18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA   59 (354)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            34567779999999999999987776  67888888888874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.86  E-value=0.00062  Score=55.72  Aligned_cols=34  Identities=35%  Similarity=0.504  Sum_probs=27.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      .++..|+|+|.+||||||+.+.|.......++.+
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~   44 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV   44 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            4567899999999999999999988765444433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.00034  Score=56.90  Aligned_cols=28  Identities=36%  Similarity=0.608  Sum_probs=24.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~   97 (324)
                      ..++|+|++|+|||||++.|.+...+.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g   30 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERG   30 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence            4699999999999999999999876653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.85  E-value=0.00064  Score=62.39  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEec
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMN  104 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~~  104 (324)
                      ..+..++|+|++|||||||++.|++...+. .+.+.+++
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e  172 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE  172 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence            456789999999999999999999986654 45554444

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.85  E-value=0.00073  Score=57.50  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=24.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..++..|+|.|++|||||||++.|.+.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            356788999999999999999999886

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=96.83  E-value=0.14  Score=45.68  Aligned_cols=39  Identities=31%  Similarity=0.327  Sum_probs=32.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ..+++-|..|+||||+.-.|.......++++.++..|+.
T Consensus        20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            456778999999999999998877777888888887764

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=96.81  E-value=0.16  Score=45.59  Aligned_cols=40  Identities=30%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ...+++.|..|+||||+.-.|.......+.++.++..|+.
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~   55 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA   55 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            4567788999999999999998877777788888888753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.80  E-value=0.00067  Score=56.29  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|++||||||+.+.|....
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.80  E-value=0.001  Score=63.56  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~  104 (324)
                      .+..++|+|++|||||||+++|++...+..+.+++.+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied  295 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED  295 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence            3456999999999999999999998877666666643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.79  E-value=0.00077  Score=54.49  Aligned_cols=23  Identities=35%  Similarity=0.720  Sum_probs=20.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHh
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      +..|+|+|+|||||||+.+.|..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            35699999999999999999987

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.79  E-value=0.00088  Score=55.80  Aligned_cols=28  Identities=39%  Similarity=0.483  Sum_probs=24.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++..|+|+|++|+|||||++.|.+..
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456789999999999999999998853

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.78  E-value=0.014  Score=52.94  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      ++..+.|+|+||+|||||+..++......++.+..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly   94 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF   94 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            45679999999999999999998875544444433

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.78  E-value=0.0011  Score=62.09  Aligned_cols=40  Identities=13%  Similarity=0.076  Sum_probs=33.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL  105 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~  105 (324)
                      ..++.+++|+|++|+|||||++.|++...+..+.+.+.+.
T Consensus       154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence            4567889999999999999999999998776666666554

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=96.76  E-value=0.093  Score=47.40  Aligned_cols=40  Identities=30%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccCCc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA  108 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d~~  108 (324)
                      ...+++.|..|+||||+.-.|.....  ..+.++.++..|+.
T Consensus        18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~   59 (348)
T 3io3_A           18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA   59 (348)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence            35677889999999999999987766  66778888877753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.75  E-value=0.00085  Score=56.60  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=22.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +.+|+|+|++||||||+.+.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.73  E-value=0.00091  Score=55.47  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|++||||||+.+.|....
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.72  E-value=0.0031  Score=63.08  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..++|+|++|+|||||++.+.+..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            5689999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.72  E-value=0.0007  Score=64.08  Aligned_cols=28  Identities=29%  Similarity=0.504  Sum_probs=23.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++.+|+++|.+|+||||+.++|.....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999987643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.71  E-value=0.0007  Score=55.10  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=23.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +..++|+|++|+|||||++++.+...
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56699999999999999999998754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.70  E-value=0.00063  Score=64.30  Aligned_cols=37  Identities=22%  Similarity=0.177  Sum_probs=30.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d  106 (324)
                      ..++|+|++|||||||++.|.+...+..+.+.+.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~   66 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT   66 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            6799999999999999999999877766655554443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.69  E-value=0.0008  Score=55.45  Aligned_cols=22  Identities=32%  Similarity=0.721  Sum_probs=20.1

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |+|+||+|||||||+++|+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998763

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.69  E-value=0.00086  Score=53.77  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .|+|+|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.68  E-value=0.0011  Score=53.72  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|+|++||||||+.+.|....
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4569999999999999999998763

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.68  E-value=0.089  Score=51.01  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=32.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      ....+++.|.+|+||||+.-.|.......++++.++..|+
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            3456788899999999999998877666677888888776

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.67  E-value=0.001  Score=55.34  Aligned_cols=22  Identities=36%  Similarity=0.415  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHh
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999987

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.66  E-value=0.0031  Score=65.13  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..++|+|++|+|||||++.+ +..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHH
Confidence            568999999999999999998 543

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.65  E-value=0.011  Score=54.03  Aligned_cols=41  Identities=15%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549           66 KRKPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        66 ~~~~~~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d  106 (324)
                      ..++..|+|+| ..|+||||+.-.|.......+.++.+++.|
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            34566788886 899999999998887765556778887776

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.65  E-value=0.0012  Score=54.11  Aligned_cols=25  Identities=40%  Similarity=0.638  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.+||||||+.+.|...
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999865

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=96.64  E-value=0.0029  Score=57.66  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             EEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        71 ~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      +|+|+ +..|+||||+.-.|.......+.++.++..|+.
T Consensus         3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q   41 (361)
T 3pg5_A            3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ   41 (361)
T ss_dssp             EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence            35555 689999999999988776667788888888875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.64  E-value=0.0011  Score=57.20  Aligned_cols=25  Identities=32%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHh
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      .++.+|+|+|++||||||+++.|..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999984

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.61  E-value=0.036  Score=52.04  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccC-CcceEEEe
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVM  103 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~-~~~~~~i~  103 (324)
                      -.++-.++|.|+||+|||||+..++..... .+..+.++
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~  238 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF  238 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            345678999999999999999999887543 23344443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.61  E-value=0.0013  Score=58.03  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEEe
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVM  103 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i~  103 (324)
                      ..++..++|+|+||+|||||++.|++..... +..+.++
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~   70 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA   70 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            3467789999999999999999999887654 3244443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.61  E-value=0.0011  Score=53.14  Aligned_cols=20  Identities=45%  Similarity=0.853  Sum_probs=18.7

Q ss_pred             cEEEEEccCCCcHHHHHHHH
Q 020549           70 VIIIVVGMAGSGKTTFMHRL   89 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l   89 (324)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.61  E-value=0.001  Score=54.20  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|++||||||+.+.|...
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~   27 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQE   27 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.60  E-value=0.0011  Score=54.99  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHh
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999988

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.59  E-value=0.0013  Score=58.20  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      .++.+|+|+|++|||||||++.|.+....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            46788999999999999999999876543

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=96.59  E-value=0.066  Score=44.63  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=25.0

Q ss_pred             EEEEEc-cCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           71 IIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        71 ~v~iiG-~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      .|+|+| .+|+||||+.-.|.......++++.++
T Consensus         3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~   36 (224)
T 1byi_A            3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            467777 589999999999887766566666663

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.59  E-value=0.0012  Score=53.80  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|.|++||||||+.+.|....
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.58  E-value=0.01  Score=59.89  Aligned_cols=49  Identities=12%  Similarity=0.098  Sum_probs=36.7

Q ss_pred             HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCC---CCEEEEeCCC
Q 020549          126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG  175 (324)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~liDtpG  175 (324)
                      ..++++.+++.... .-.....+|.|++|++.++.+....   .+++|+|.|-
T Consensus       710 ~~~~L~~~gL~~~~-l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT  761 (842)
T 2vf7_A          710 ALDTLREVGLGYLR-LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT  761 (842)
T ss_dssp             HHHHHHHTTCTTSB-TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred             HHHHHHHcCCCccc-ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence            45678888887521 1122346999999999999999875   6999999884

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.57  E-value=0.0011  Score=60.68  Aligned_cols=28  Identities=18%  Similarity=0.383  Sum_probs=24.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~   96 (324)
                      +.+++|+|++|+|||||++.|.+...+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999976543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.55  E-value=0.025  Score=52.92  Aligned_cols=37  Identities=11%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      .++-.+.|.|+||+|||||+..++......+..+.++
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f  231 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH  231 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence            4566799999999999999988877654334445443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.54  E-value=0.0016  Score=53.19  Aligned_cols=25  Identities=28%  Similarity=0.579  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999875

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.53  E-value=0.02  Score=58.30  Aligned_cols=47  Identities=15%  Similarity=0.185  Sum_probs=35.7

Q ss_pred             HHHHHHcCCCC-CCcccccccccChHHHHHHHHHHHHhCC---CCEEEEeCCC
Q 020549          127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPG  175 (324)
Q Consensus       127 ~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~liDtpG  175 (324)
                      .++++.++|.. ..+  .....+|.|++|++.++.+....   ++++|+|.|-
T Consensus       826 ~~~L~~~gL~~~~l~--~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT  876 (972)
T 2r6f_A          826 LETLYDVGLGYMKLG--QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT  876 (972)
T ss_dssp             HHHHHHTTCSSSBTT--CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred             HHHHHHcCCCccccc--CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            46788888865 222  22335999999999999999865   4899999884

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.53  E-value=0.0016  Score=53.88  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|.+||||||+.+.|....
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.52  E-value=0.011  Score=59.56  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..+..++|+|++|+|||||++.+.+.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            34568999999999999999998875

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.51  E-value=0.026  Score=57.44  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=34.5

Q ss_pred             HHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCC---CEEEEeCCC
Q 020549          126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPG  175 (324)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~liDtpG  175 (324)
                      ..++++.++++... .-.....+|.|++|++.++.+.....   +++|+|.|-
T Consensus       785 ~~~~L~~vGL~~~~-lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT  836 (916)
T 3pih_A          785 TLQVLHDVGLGYVK-LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT  836 (916)
T ss_dssp             HHHHHHHTTGGGSB-TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred             HHHHHHHcCCchhh-ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence            34567777775321 11223359999999999999997654   699999884

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.49  E-value=0.0017  Score=54.18  Aligned_cols=27  Identities=30%  Similarity=0.484  Sum_probs=23.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..|+|+|.+||||||+.+.|....
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.49  E-value=0.0017  Score=52.73  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|.+||||||+.+.|.+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.49  E-value=0.0018  Score=53.55  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ...+..|+|+|.+||||||+.+.|...
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            445678999999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.48  E-value=0.0019  Score=52.66  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.+||||||+.+.|...
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.48  E-value=0.0016  Score=54.01  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      +..|+|.|.+||||||+.+.|......
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            567999999999999999999876443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.48  E-value=0.0017  Score=54.68  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++.+|+|+|.+||||||+.+.|....
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.47  E-value=0.0019  Score=53.70  Aligned_cols=26  Identities=35%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|.+||||||+.+.|....
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.46  E-value=0.087  Score=49.20  Aligned_cols=28  Identities=18%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++-.+.|.|+||+|||||+..++....
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4566799999999999999999887644

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.45  E-value=0.0017  Score=53.08  Aligned_cols=24  Identities=38%  Similarity=0.671  Sum_probs=21.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +..|+|+|.+||||||+.+.|...
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999999999765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.44  E-value=0.0019  Score=53.01  Aligned_cols=25  Identities=48%  Similarity=0.591  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.+||||||+.+.|...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.43  E-value=0.0021  Score=52.43  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=21.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..|+|+|.+||||||+.+.|.....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999988654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.43  E-value=0.0018  Score=52.51  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.+|+||||+.+.|...
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            4556999999999999999999865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.43  E-value=0.023  Score=52.67  Aligned_cols=28  Identities=29%  Similarity=0.713  Sum_probs=23.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ...+..|+|+|.+||||||+.++|....
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456789999999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.40  E-value=0.0033  Score=53.50  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      .++..|+|.|++||||||+++.|...... +..+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~   56 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV   56 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence            36788999999999999999999987655 4433

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.38  E-value=0.0011  Score=55.39  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEE
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY  101 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~  101 (324)
                      .|+|.|.+||||||+++.|.......+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~   32 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            5899999999999999999877544443333

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.38  E-value=0.002  Score=52.44  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +..|+++|++||||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999865

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.36  E-value=0.0019  Score=53.23  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|+|+|.+||||||+.+.|....
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            58999999999999999998753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.36  E-value=0.0023  Score=52.81  Aligned_cols=26  Identities=38%  Similarity=0.571  Sum_probs=23.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35678999999999999999999875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.35  E-value=0.0024  Score=53.86  Aligned_cols=28  Identities=39%  Similarity=0.463  Sum_probs=23.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++..|.|+|+|||||+|....|+...
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456678899999999999999998763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.35  E-value=0.0021  Score=55.10  Aligned_cols=25  Identities=32%  Similarity=0.243  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++.+|+|+|++||||||+.+.|...
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.34  E-value=0.0028  Score=52.41  Aligned_cols=26  Identities=35%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..|+|+|.+||||||+.+.|...
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45568999999999999999999865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.30  E-value=0.0022  Score=54.20  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|++||||||+.+.|...
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.30  E-value=0.0022  Score=56.55  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=23.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..|+|+|+|||||||+.++|....
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.27  E-value=0.0021  Score=54.09  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|+|+|++||||||+.+.|....
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.24  E-value=0.0026  Score=51.66  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHhccc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+|+|++|+|||||+.+|.....
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            789999999999999999987543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.23  E-value=0.0026  Score=52.26  Aligned_cols=24  Identities=42%  Similarity=0.534  Sum_probs=21.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +..|+|+|.+||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999875

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=96.22  E-value=0.0067  Score=56.03  Aligned_cols=42  Identities=31%  Similarity=0.453  Sum_probs=24.0

Q ss_pred             CCCcEEEEE-ccCCCcHHHHHHHHHhccc------CCcceEEEeccCCc
Q 020549           67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA  108 (324)
Q Consensus        67 ~~~~~v~ii-G~~gaGKSTLl~~l~~~~~------~~~~~~~i~~~d~~  108 (324)
                      .++..|+|+ |..|+||||+.-.|.....      ..++++.+++.|+.
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~  157 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ  157 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence            345567777 6899999999988877654      35678888888874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.21  E-value=0.0024  Score=53.35  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|++||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.21  E-value=0.003  Score=52.95  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHh
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      ++..|+|+|.+||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999976

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.18  E-value=0.003  Score=54.44  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=22.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..|+|.|.+||||||+.+.|...
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999774

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.18  E-value=0.0024  Score=55.90  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccC
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      ++|+|+||+|||||++++.+....
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC
Confidence            999999999999999999987543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.18  E-value=0.0032  Score=52.61  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .++..|+|+|.+|+||||+.+.|.+...
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567899999999999999999987654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.16  E-value=0.0027  Score=53.13  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.15  E-value=0.0026  Score=54.91  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=24.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ...+..|+++|+|||||||+.+.|....
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456789999999999999999998764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.15  E-value=0.0021  Score=52.10  Aligned_cols=25  Identities=36%  Similarity=0.406  Sum_probs=17.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.+||||||+.+.|...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999999765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.13  E-value=0.003  Score=53.64  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=23.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..++|+|++|+|||||+..|++.
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            35678999999999999999999985

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.12  E-value=0.023  Score=48.04  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=28.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEe
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM  103 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~  103 (324)
                      .++..+.+.|++|+||||++-.++......+..+.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            3567799999999999999988877765555555554

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.12  E-value=0.0033  Score=54.50  Aligned_cols=25  Identities=36%  Similarity=0.624  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|+|.|||||||+.+.|...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999875

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.12  E-value=0.019  Score=52.00  Aligned_cols=35  Identities=26%  Similarity=0.238  Sum_probs=26.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      ++..+.|.|+||+|||||+..++......+..+.+
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly   94 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF   94 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            45679999999999999999988665444444444

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.12  E-value=0.0027  Score=51.62  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .+|+|+|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.10  E-value=0.0029  Score=54.60  Aligned_cols=25  Identities=36%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|+|++||||||+.+.|.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5679999999999999999998753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.10  E-value=0.00044  Score=58.90  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=25.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      ..++|+|++|||||||+++|++...+..+.+.+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~   60 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF   60 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence            347899999999999999999987776554433

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.08  E-value=0.0029  Score=51.10  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|+|+|++||||||+.+.|....
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.06  E-value=0.0033  Score=52.83  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++.+|+|+|.+||||||+.+.|....
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.02  E-value=0.0032  Score=54.10  Aligned_cols=23  Identities=26%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             EEEEccCCCcHHHHHHHHHhccc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ++|+|++|+|||||++++.+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.01  E-value=0.004  Score=57.09  Aligned_cols=26  Identities=31%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..+..++|+|++|+|||||++.|.+.
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45668999999999999999999975

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=96.01  E-value=0.13  Score=43.43  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             cEEEEEcc-CCCcHHHHHHHHHhcccCCcceEEE
Q 020549           70 VIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        70 ~~v~iiG~-~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      ..+.|.|. +|+|||++.-.|+......+.++..
T Consensus         5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~   38 (228)
T 3of5_A            5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC   38 (228)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence            45788886 9999999998888776655555544

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.99  E-value=0.0042  Score=49.03  Aligned_cols=24  Identities=25%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +...+|+|++|+|||||+.+|.-.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998753

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=95.98  E-value=0.024  Score=52.10  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             CCCcEEEEE-ccCCCcHHHHHHHHHhccc------CCcceEEEeccCCc
Q 020549           67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQ------SRNIRGYVMNLDPA  108 (324)
Q Consensus        67 ~~~~~v~ii-G~~gaGKSTLl~~l~~~~~------~~~~~~~i~~~d~~  108 (324)
                      ..+.+|+|+ |..|+||||+.-.|.....      ..++++.++..|+.
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q  154 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ  154 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence            345567777 6899999999998877654      24678888888863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.98  E-value=0.004  Score=53.14  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|.|++|+||||+.+.|...
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.96  E-value=0.0039  Score=52.17  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|+|||||+|....|+...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998763

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.96  E-value=0.004  Score=49.90  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..|+|+|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.96  E-value=0.0041  Score=50.75  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|+|.|.+||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.95  E-value=0.0046  Score=59.32  Aligned_cols=40  Identities=20%  Similarity=0.165  Sum_probs=29.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHH--HhcccCCcceEEEeccC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRL--VCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l--~~~~~~~~~~~~i~~~d  106 (324)
                      .++..++|+|++|||||||++.|  .+...+..+.+++.+.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            46778999999999999999994  45554344556554443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.92  E-value=0.004  Score=56.03  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++++|+||+|||||++.+++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            458999999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.91  E-value=0.004  Score=53.76  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|+|+|++|||||||.+.|....
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            58999999999999999998753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.90  E-value=0.0037  Score=60.25  Aligned_cols=32  Identities=22%  Similarity=0.466  Sum_probs=27.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~   97 (324)
                      ..++..|+|+|++|||||||++.|.+...+.+
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~  397 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMG  397 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence            34678899999999999999999998866543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.89  E-value=0.0046  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHhc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.89  E-value=0.005  Score=52.30  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+..|+|+|.+||||||+.+.|....
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345679999999999999999998763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.89  E-value=0.005  Score=52.27  Aligned_cols=36  Identities=19%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      .++..++|+|+||+|||||+..++......+..+.+
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~   56 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIY   56 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            356679999999999999988877654333333333

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.82  E-value=0.0048  Score=51.56  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|++||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.81  E-value=0.0056  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHh
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      .++..|+|+|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999984

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.79  E-value=0.0045  Score=54.02  Aligned_cols=23  Identities=26%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             EEEEccCCCcHHHHHHHHHhccc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ++|+|++|+|||||++++.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999998653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.79  E-value=0.17  Score=45.53  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..+..+.|.|++|+|||||+..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999875

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=95.77  E-value=0.55  Score=39.96  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhCCCCEEEEeCCCC-cchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC
Q 020549          154 EVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL  232 (324)
Q Consensus       154 ~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (324)
                      +............+++++|.||- ..+.........+.+.+    ..-+|+|++...+.     +...+..+..+...++
T Consensus       120 ~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l----~~pVILV~~~~lg~-----i~~~~lt~~~l~~~g~  190 (242)
T 3qxc_A          120 NLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL----KAKMLLISHDNLGL-----INDCLLNDFLLKSHQL  190 (242)
T ss_dssp             HHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHH----TCEEEEEECCSTTH-----HHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHc----CCCEEEEEcCCCcH-----HHHHHHHHHHHHhCCC
Confidence            33444444556889999999863 22211111222233322    34688889886652     1122333445556666


Q ss_pred             CeEEEeeccccCC
Q 020549          233 PLVLAFNKTDVAQ  245 (324)
Q Consensus       233 p~ilv~NK~Dl~~  245 (324)
                      +.=+|+|+++-..
T Consensus       191 ~~GvIlN~v~~~~  203 (242)
T 3qxc_A          191 DYKIAINLKGNNT  203 (242)
T ss_dssp             CEEEEECCCTTCC
T ss_pred             CEEEEEeCCCCcc
Confidence            6778999998543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.75  E-value=0.0064  Score=51.71  Aligned_cols=27  Identities=33%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..++.+|+|+|++|+||||+.+.|.+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999999874

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.70  E-value=0.17  Score=47.92  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=26.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC-cceEEE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYV  102 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~-~~~~~i  102 (324)
                      .++..+.|.|+||+|||||+..++...... +..+.+
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~  276 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGL  276 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEE
Confidence            456679999999999999999888765443 333433

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.70  E-value=0.0059  Score=51.52  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|++||||||+.+.|....
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.69  E-value=0.0083  Score=56.16  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +.-+.|.|++|+|||||++++.+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3458999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.68  E-value=0.0033  Score=55.56  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=19.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..|+|.|++||||||+.+.|...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-48
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	4e-07
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	3e-05
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	6e-05
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	1e-04
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	3e-04
d1j8yf2	211	c.37.1.10 (F:87-297) GTPase domain of the signal s	3e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	5e-04
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-04
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	0.001
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.002
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.002
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.003
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.003
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	0.004
d1vmaa2	213	c.37.1.10 (A:82-294) GTPase domain of the signal r	0.004
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	0.004

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score =  160 bits (405), Expect = 2e-48
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 70  VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV 129
           +I++ VG AGSGKTT       + +      YV NLD  V  LP+  +ID+R+ +  +E+
Sbjct: 1   MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV-NLDTGVKELPYEPSIDVREFVTVEEI 59

Query: 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189
           M++   GPNG I+ S +    KF+E ++ I R     DYVL+DTPGQ+E F +   G  +
Sbjct: 60  MREG-YGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 118

Query: 190 TEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA---QH 246
            E        +V Y+ D      P  +     +A  I  +     + A NK D+    + 
Sbjct: 119 MENL---PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 175

Query: 247 EFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK 306
           E   ++ +D +   A +  D S    +   +   + E    ++ + +S+ +  G E    
Sbjct: 176 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 235

Query: 307 AVEE 310
              E
Sbjct: 236 LAYE 239

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 19/146 (13%), Positives = 41/146 (28%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           ++     +G+GKTT + +L+    +R IR  ++      M +                  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190
              +      +  + +        + S ++     L  V      +I        GA   
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 191 EAFASTFPTVVTYVVDTPRSANPMTF 216
                    V+    D P + +    
Sbjct: 124 PEELVIDRHVIAVASDVPLNLDVALL 149

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 69  PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106
           P +I++VG+   GKT    +L  +     +     N+ 
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 18/138 (13%)

Query: 193 FASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 252
                  +   +VD      P T  +  +         R P V+A NK D        E 
Sbjct: 89  RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIHGWRVHEG 143

Query: 253 MQDFEVFQAAISSDHSYTSTLTNSLSLALDE-------------FYKNLKSVGVSSVSGA 299
               E F            T    L   L E             F   +  + +S+++G 
Sbjct: 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE 203

Query: 300 GIEAYFKAVEESAQEFME 317
           GI      +   AQ+++ 
Sbjct: 204 GIPELLTMLMGLAQQYLR 221

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 4/138 (2%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           +  VVG   SGKTT M + V        R   +            A  +  D++R++   
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG---GEPARPEGVDSVRHERA- 58

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190
                   G  L  L+L    +     L       LD VLV+   Q          +   
Sbjct: 59  GAVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEED 118

Query: 191 EAFASTFPTVVTYVVDTP 208
            A       +   +   P
Sbjct: 119 WASLQHLANIRAVIAWEP 136

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 13/120 (10%), Positives = 35/120 (29%), Gaps = 6/120 (5%)

Query: 68  KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI--- 124
            P +++ VG  G+GK+TF+   +      ++    +      ++   AA    +  +   
Sbjct: 13  NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDN 72

Query: 125 ---RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181
                    +      + G+      F    ++       R          +   +  + 
Sbjct: 73  TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYR 132

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 66  KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR 125
            + P +I++VG+ G+GK T   +L    + +  +  ++                      
Sbjct: 9   DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG--------------ADVYRPA 54

Query: 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185
             E ++Q        +                + +  ++ ++ ++VDT G+      +A 
Sbjct: 55  ALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAAL 114

Query: 186 GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226
              +   + +  P  VT V+D           S    A  I
Sbjct: 115 LEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKI 155

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAANIDIRDTIRYK 127
            + + G  G GKTT +H+     +S  +       +        + F             
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62

Query: 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL-----DYVLVDTPGQIEIFT 181
            V  +   G     +    +  T F+++   + R AD          ++D  G++E+F+
Sbjct: 63  RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 17/118 (14%)

Query: 71  IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM 130
           I IV G+ G GK+T + ++     ++ I             + +       D +    + 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGIN---------NKIINYG------DFMLATALK 47

Query: 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRA--DHLDYVLVDTPGQIEIFTWSASG 186
             +    +     S+        +    I   A      Y+ +DT   I   +    G
Sbjct: 48  LGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPG 105

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106
           +K  II V G +G+G +T  H      +   ++   +  D
Sbjct: 2   KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 41

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98
          K KP ++ V+G  GSGK T    +V      ++
Sbjct: 3  KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 67  RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----LPFAANIDIRD 122
               I +++G++GSGK+     +     +  + G  ++    +       P   +     
Sbjct: 4   HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPW 63

Query: 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER 161
                +            ++    L     D +      
Sbjct: 64  LQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPN 102

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 61  SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104
             +   +K   ++ +G+  +GKTT +H L      +++      
Sbjct: 5   QFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 48

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 15/79 (18%), Positives = 32/79 (40%)

Query: 65  FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI 124
           F  K + I+++G+  +GKTT +++L        I     N++            D+    
Sbjct: 8   FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 125 RYKEVMKQFNLGPNGGILT 143
           + + + + +  G  G I  
Sbjct: 68  KIRPLWRHYYTGTQGLIFV 86

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 11/70 (15%), Positives = 28/70 (40%)

Query: 66  KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIR 125
               +++ + G++ SGKTT  ++L    + + I   V ++D  ++      +    +   
Sbjct: 19  TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE 78

Query: 126 YKEVMKQFNL 135
           Y  +      
Sbjct: 79  YYYLQWDVEW 88

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 61  SSINFK-RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107
           + +N     P +I+VVG+ G+GKTT   +L            +   D 
Sbjct: 2   TKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 49

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 66  KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107
            + P +I++VG+ G GKTT + +L    + +     +   D 
Sbjct: 6   GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.85
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.85
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.85
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.85
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.85
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.84
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.84
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.84
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.83
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.83
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.83
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.82
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.82
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.82
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.81
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.79
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.79
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.78
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.78
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.78
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.76
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.74
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.74
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.69
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.68
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.68
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.67
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.64
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.63
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.59
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.59
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.44
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.38
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.36
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	99.26
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.26
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.23
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.21
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.1
d1vmaa2	213	GTPase domain of the signal recognition particle r	99.09
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.08
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.08
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.05
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.04
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.03
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.02
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.98
d1okkd2	207	GTPase domain of the signal recognition particle r	98.98
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.98
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.95
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.95
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.93
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.89
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.88
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.86
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.85
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.79
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.78
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.76
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.73
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.73
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.71
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.68
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.65
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.6
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.47
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.37
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.15
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	98.04
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.95
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.85
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.79
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.45
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.44
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.43
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.42
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.37
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.31
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.29
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.2
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.16
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.14
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.07
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.05
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.04
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.01
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.97
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.96
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.93
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.91
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.91
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.86
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.86
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.85
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.8
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.78
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.76
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.74
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.74
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.71
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.69
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.68
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.67
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.64
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.62
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.6
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.6
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.55
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.5
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.47
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.43
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.43
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.41
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.37
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.33
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.31
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.3
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.27
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.22
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.21
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.16
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.05
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.99
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.98
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.97
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.95
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.89
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.74
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.73
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.68
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.67
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.61
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.61
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.53
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.49
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.44
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.33
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.19
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.08
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.07
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.05
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.98
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.98
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.95
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.92
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.82
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.81
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.75
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.72
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.61
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.59
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.58
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.49
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.31
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.08
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.06
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.04
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.95
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.79
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.77
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.74
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.68
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.67
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.43
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.3
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.26
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.06
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.82
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.79
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.76
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.73
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.61
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.52
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.49
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.23
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.13
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.93
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.75
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.14
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.08
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.22
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.9
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.45
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.97
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.79
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.45
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.94
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	87.81
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.64
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.6
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.04
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.81
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.57

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.94  E-value=2.2e-26  Score=198.63  Aligned_cols=236  Identities=28%  Similarity=0.406  Sum_probs=174.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      +|+|+|++|||||||+++|+.... .++.+.+++.|++....++...+|.+..+.+...+... +.++.|.+++...+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG-YGPNGAIVESYDRLME   79 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTT-CCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhh-hccCCchhhhhHhHHh
Confidence            689999999999999999997654 46678899999999888888888877776666666543 4555554444444555


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~  230 (324)
                      .+......+........++++|+||+.+++........+.   .....+++++++|+..+..++.+....+.......+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~---~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~  156 (244)
T d1yrba1          80 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM---ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL  156 (244)
T ss_dssp             THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHH---HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhccccceeeeccccchhHHHHHHHHHHHH---hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh
Confidence            5555555555555578999999999988754444333332   2334578999999998888877555545444455667


Q ss_pred             CCCeEEEeeccccCChHhHHHHH---HhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWM---QDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ..|.++|+||+|+.+.+....+.   +.+..+...+...+.....+...+...+.++....+++|+||++|+|+++|+..
T Consensus       157 ~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~  236 (244)
T d1yrba1         157 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL  236 (244)
T ss_dssp             TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred             CCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHH
Confidence            89999999999999976544333   344445555555666677777777777777778899999999999999999999


Q ss_pred             HHHH
Q 020549          308 VEES  311 (324)
Q Consensus       308 i~~~  311 (324)
                      |.++
T Consensus       237 l~e~  240 (244)
T d1yrba1         237 AYEH  240 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.5e-25  Score=184.81  Aligned_cols=171  Identities=22%  Similarity=0.273  Sum_probs=111.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+|+|.+|||||||+|+|++.....            ++..+.++.....                  +...     
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~------------~~~~~~tt~~~~~------------------~~~~-----   49 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAP------------ISPRPQTTRKRLR------------------GILT-----   49 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSC------------CCSSSCCCCSCEE------------------EEEE-----
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcee------------ecccCCccccccc------------------ceee-----
Confidence            3469999999999999999999875432            2223322210000                  0000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHH-h-ccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-A-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~-~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                    ..+..+.+|||||+....  ......+.... . -..+|+++||+|++++....+.+.  ...++ 
T Consensus        50 --------------~~~~~~~~~DtpG~~~~~--~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i--~~~l~-  110 (178)
T d1wf3a1          50 --------------EGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELV--ARALK-  110 (178)
T ss_dssp             --------------ETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHH--HHHHG-
T ss_pred             --------------eeeeeeeecccccccccc--cccchhcccccccccccccceeeeechhhhhcccccch--hhhee-
Confidence                          225678999999987652  12222222222 1 145799999999998876654321  11111 


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.....  +..+.+.                         +..+...++++||++|.|+++|++
T Consensus       111 ~~~~~~piilv~NK~Dl~~~~~--~~~~~~~-------------------------~~~~~~~~~~iSA~~~~gi~~L~~  163 (178)
T d1wf3a1         111 PLVGKVPILLVGNKLDAAKYPE--EAMKAYH-------------------------ELLPEAEPRMLSALDERQVAELKA  163 (178)
T ss_dssp             GGTTTSCEEEEEECGGGCSSHH--HHHHHHH-------------------------HTSTTSEEEECCTTCHHHHHHHHH
T ss_pred             ccccchhhhhhhcccccccCHH--HHHHHHH-------------------------hhcccCceEEEecCCCCCHHHHHH
Confidence            1234689999999999987532  1222221                         223456789999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 020549          307 AVEESAQEFMETYK  320 (324)
Q Consensus       307 ~i~~~~~~~~~~~~  320 (324)
                      .|.+.+|+.++.|+
T Consensus       164 ~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         164 DLLALMPEGPFFYP  177 (178)
T ss_dssp             HHHTTCCBCCCSSC
T ss_pred             HHHHhCCCCCCCCC
Confidence            99999999888886

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=2.3e-24  Score=177.85  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=82.3

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      +..+.++|+||+.++..      .+...  ...+|++++++|+.++..+++..     .+..+...++|+++|+||+|++
T Consensus        58 ~~~~~~~d~~g~~~~~~------~~~~~--l~~~d~~ilv~d~~~g~~~~~~~-----~~~~~~~~~~p~iiv~NKiD~~  124 (179)
T d1wb1a4          58 NYRITLVDAPGHADLIR------AVVSA--ADIIDLALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNA  124 (179)
T ss_dssp             TEEEEECCCSSHHHHHH------HHHHH--TTSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSS
T ss_pred             Ccccccccccccccccc------chhhh--hhhccccccccccccccchhhhh-----hhhhhhhcCCcceecccccccc
Confidence            56788999999766521      11111  23469999999999988766522     2244566789999999999999


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEF  315 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~  315 (324)
                      ..+......+..+.+.+..                   ......++||+||++|+|+++|++.|.+.+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         125 GTEEIKRTEMIMKSILQST-------------------HNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CHHHHHHHHHHHHHHHHHS-------------------SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHh-------------------hcCCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            8765433222222211100                   113457999999999999999999999998763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=6.3e-24  Score=181.84  Aligned_cols=201  Identities=22%  Similarity=0.282  Sum_probs=112.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ++++|+|+|++|||||||+|+|++..........+ .........+       .+....     ..      +....  .
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~-----~~------~~~~~--~   62 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGI-TQHIGATEIP-------MDVIEG-----IC------GDFLK--K   62 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----C-CCBTTEEEEE-------HHHHHH-----HS------CGGGG--G
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCce-eeeccccccc-------cccccc-----cc------ccccc--c
Confidence            44569999999999999999999876554322211 0000010000       000000     00      00000  0


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                      +           .......++.|+||||+.+|......        ....+|++++|||+.+++..++     ...+..+
T Consensus        63 ~-----------~~~~~~~~~~~iDtPGh~~f~~~~~~--------~~~~~D~~ilVvda~~g~~~~~-----~~~~~~~  118 (227)
T d1g7sa4          63 F-----------SIRETLPGLFFIDTPGHEAFTTLRKR--------GGALADLAILIVDINEGFKPQT-----QEALNIL  118 (227)
T ss_dssp             C-----------GGGGTCCEEEEECCCTTSCCTTSBCS--------SSBSCSEEEEEEETTTCCCHHH-----HHHHHHH
T ss_pred             e-----------eecccccccccccccceecccccchh--------cccccceEEEEEecccCcccch-----hHHHHHh
Confidence            0           00134678999999998776321111        1134799999999999998776     2334566


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHH---H----HhHHHHHHHHhcCccchhhHHHHHHHhHHH------------HhccC
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEW---M----QDFEVFQAAISSDHSYTSTLTNSLSLALDE------------FYKNL  288 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~  288 (324)
                      ...++|+|+|+||+|++..+.....   .    .........      ....+.+....+.+.            +....
T Consensus       119 ~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  192 (227)
T d1g7sa4         119 RMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK------LDTKVYELVGKLHEEGFESERFDRVTDFASQV  192 (227)
T ss_dssp             HHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH------HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEE
T ss_pred             hcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH------HHHHHHHHHHHHHHhhhhhhhhcccccccCCC
Confidence            6788999999999999865421100   0    000000000      001111111111111            22346


Q ss_pred             ceeeeccccCCChHHHHHHHHHHHHHHHHhh
Q 020549          289 KSVGVSSVSGAGIEAYFKAVEESAQEFMETY  319 (324)
Q Consensus       289 ~iv~vSA~~g~gv~~l~~~i~~~~~~~~~~~  319 (324)
                      +++|+||++|.|+++|++.|.....++....
T Consensus       193 ~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~  223 (227)
T d1g7sa4         193 SIIPISAITGEGIPELLTMLMGLAQQYLREQ  223 (227)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHHCSGG
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999998887655443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=2.1e-23  Score=171.99  Aligned_cols=130  Identities=22%  Similarity=0.232  Sum_probs=80.1

Q ss_pred             CCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCCCCCch-hHHHhHHHHHHHHhhcCCCeEEEeeccc
Q 020549          165 HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYACSILYKTRLPLVLAFNKTD  242 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~NK~D  242 (324)
                      +..+.+|||||+.+..... .......+.+  ..++++++++|........ ..+...+... .....++|+|+|+||+|
T Consensus        48 ~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~NK~D  124 (180)
T d1udxa2          48 EERFTLADIPGIIEGASEGKGLGLEFLRHI--ARTRVLLYVLDAADEPLKTLETLRKEVGAY-DPALLRRPSLVALNKVD  124 (180)
T ss_dssp             SCEEEEEECCCCCCCGGGSCCSCHHHHHHH--TSSSEEEEEEETTSCHHHHHHHHHHHHHHH-CHHHHHSCEEEEEECCT
T ss_pred             CCeEEEcCCCeeecCchHHHHHHHHHHHHH--Hhhhhhhhhcccccccccchhhhhhhhhcc-ccccchhhhhhhhhhhh
Confidence            5678999999976542211 1112222222  4568999999986543211 1222212111 12234689999999999


Q ss_pred             cCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHH-Hhhhc
Q 020549          243 VAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM-ETYKY  321 (324)
Q Consensus       243 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~-~~~~~  321 (324)
                      +...+......+.+.                           ..+.+++++||++|+||++|++.|.+.+...+ ..++.
T Consensus       125 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~iSA~tg~gid~L~~~i~~~l~~~~~~~~~~  177 (180)
T d1udxa2         125 LLEEEAVKALADALA---------------------------REGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPK  177 (180)
T ss_dssp             TSCHHHHHHHHHHHH---------------------------TTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             hhhHHHHHHHHHHHH---------------------------hcCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcCCC
Confidence            998765433322221                           13678999999999999999999999987643 33444


Q ss_pred             cCC
Q 020549          322 CLP  324 (324)
Q Consensus       322 ~~~  324 (324)
                      ..|
T Consensus       178 ~~p  180 (180)
T d1udxa2         178 PVP  180 (180)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            433

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.1e-22  Score=166.30  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=100.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+|+|++|||||||+|+|++.....            +...++++.....                  +...       
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~------------~~~~~~~t~~~~~------------------~~~~-------   44 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAI------------VEDEEGVTRDPVQ------------------DTVE-------   44 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------------------CCSE------------------EEEE-------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcce------------ecccCceeecccc------------------cccc-------
Confidence            58999999999999999999865432            1222222200000                  0000       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                  .....+.++||||+................... ..+|++++++|+++++......     .+..+..
T Consensus        45 ------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~-----~~~~l~~  107 (171)
T d1mkya1          45 ------------WYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDES-----LADFLRK  107 (171)
T ss_dssp             ------------ETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHH-----HHHHHHH
T ss_pred             ------------ccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccccc-----ccccccc
Confidence                        235578899999976542222222222222221 4579999999998887665422     1234456


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .++|+|+|+||+|+.+..... ...++                          ......+++++||++|.|+++|++.|.
T Consensus       108 ~~~pviiv~NK~Dl~~~~~~~-~~~~~--------------------------~~~~~~~~i~iSAk~g~gid~L~~~i~  160 (171)
T d1mkya1         108 STVDTILVANKAENLREFERE-VKPEL--------------------------YSLGFGEPIPVSAEHNINLDTMLETII  160 (171)
T ss_dssp             HTCCEEEEEESCCSHHHHHHH-THHHH--------------------------GGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhhhhH-HHHHH--------------------------HhcCCCCeEEEecCCCCCHHHHHHHHH
Confidence            789999999999987432211 11010                          112456789999999999999999999


Q ss_pred             HHHHHHH
Q 020549          310 ESAQEFM  316 (324)
Q Consensus       310 ~~~~~~~  316 (324)
                      +.+++..
T Consensus       161 ~~l~e~~  167 (171)
T d1mkya1         161 KKLEEKG  167 (171)
T ss_dssp             HHHHHTT
T ss_pred             HhCCCCC
Confidence            9988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=4.7e-22  Score=164.02  Aligned_cols=169  Identities=18%  Similarity=0.163  Sum_probs=100.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+|+|+||||||||+|+|++....             ++.+|++|    ++.                  ..       
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-------------~~~~~g~T----~~~------------------~~-------   39 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-------------RGKRPGVT----RKI------------------IE-------   39 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-------------SSSSTTCT----TSC------------------EE-------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-------------eeCCCCEe----ecc------------------cc-------
Confidence            4899999999999999999986442             44555554    110                  00       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchh-----hhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHH-----
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIF-----TWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMS-----  218 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-----~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~-----  218 (324)
                                  .....+.||||||+....     ........+......  ..+|++++++|+.........+.     
T Consensus        40 ------------~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~  107 (184)
T d2cxxa1          40 ------------IEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI  107 (184)
T ss_dssp             ------------EEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCC
T ss_pred             ------------cccccceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhcccc
Confidence                        113467899999964321     011112222332222  34799999999864321111100     


Q ss_pred             -hHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc
Q 020549          219 -NMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS  297 (324)
Q Consensus       219 -~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~  297 (324)
                       .....+..+...++|+|+|+||+|+++....  ....+.   ..+              ...+  ......++++||++
T Consensus       108 ~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~--~~~~~~---~~~--------------~~~~--~~~~~~~~~vSA~~  166 (184)
T d2cxxa1         108 PIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE--VINFLA---EKF--------------EVPL--SEIDKVFIPISAKF  166 (184)
T ss_dssp             CHHHHHHHHHHHTTCCEEEEEECGGGCSCHHH--HHHHHH---HHH--------------TCCG--GGHHHHEEECCTTT
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeeeehhhhHHH--HHHHHH---HHh--------------cccc--cccCCeEEEEECCC
Confidence             0022234556678999999999998865321  111111   100              0000  00124588999999


Q ss_pred             CCChHHHHHHHHHHHHH
Q 020549          298 GAGIEAYFKAVEESAQE  314 (324)
Q Consensus       298 g~gv~~l~~~i~~~~~~  314 (324)
                      |.|+++|++.|.+.+++
T Consensus       167 g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         167 GDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHccC
Confidence            99999999999999885

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=4.4e-22  Score=167.62  Aligned_cols=116  Identities=20%  Similarity=0.290  Sum_probs=77.4

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC-CchhHHHhHHHHHHHHhhcCC-CeEEEeecccc
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV  243 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~-~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl  243 (324)
                      ..+.|+||||+.+|..      .+..  ....+|++|+|||+.+++ ..++  .+   .+..+...++ |+|+++||+|+
T Consensus        86 r~~~iiD~PGH~df~~------~~~~--~~~~ad~ailvVda~~gi~~~~t--~e---~~~~~~~~~i~~iIV~vNK~Dl  152 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMA------TMLS--GAALMDGAILVVAANEPFPQPQT--RE---HFVALGIIGVKNLIIVQNKVDV  152 (205)
T ss_dssp             EEEEEEECSCHHHHHH------HHHH--TSSCCSEEEEEEETTSCSSCHHH--HH---HHHHHHHTTCCCEEEEEECGGG
T ss_pred             EEEEEeccchHHHHHh------hhhc--ceeccccccccccccccccchhH--HH---HHHHHHHcCCceeeeccccCCC
Confidence            3688999999877621      1111  125579999999999987 3333  11   2233444564 78889999999


Q ss_pred             CChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHH
Q 020549          244 AQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQE  314 (324)
Q Consensus       244 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~  314 (324)
                      +..............+...                    .+...++++|+||++|.||++|++.|..++|+
T Consensus       153 ~~~~~~~~~~~~~~~~l~~--------------------~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         153 VSKEEALSQYRQIKQFTKG--------------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             SCHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccchHHHHHHHHHHHHhcc--------------------ccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            9876543333222211110                    12345789999999999999999999887653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=4.8e-22  Score=166.04  Aligned_cols=116  Identities=20%  Similarity=0.270  Sum_probs=76.1

Q ss_pred             CCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeeccccC
Q 020549          166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVA  244 (324)
Q Consensus       166 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~  244 (324)
                      ..+.|+||||+.+|..      .+.+.+  ..+|++++|||+.++...+. +.+.+   ..+...++| +|+|+||+|+.
T Consensus        78 ~~~~~iDtPGh~~f~~------~~~~~~--~~~d~~ilvvda~~g~~~~~-t~e~~---~~~~~~~~~~iiv~inK~D~~  145 (195)
T d1kk1a3          78 RRVSFIDAPGHEALMT------TMLAGA--SLMDGAILVIAANEPCPRPQ-TREHL---MALQIIGQKNIIIAQNKIELV  145 (195)
T ss_dssp             EEEEEEECSSHHHHHH------HHHHCG--GGCSEEEEEEETTSCSSCHH-HHHHH---HHHHHHTCCCEEEEEECGGGS
T ss_pred             eeEeeeccchhhhhhH------Hhhccc--ccccccccccchhhhhhhhh-hHHHH---HHHHHhcCccceeeeecccch
Confidence            4588999999766521      121111  45799999999999874432 22222   344445555 67789999999


Q ss_pred             ChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHH
Q 020549          245 QHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      +..........+..+...                    .....+++||+||++|+|+++|++.|.+.+|
T Consensus       146 d~~~~~~~~~~~~~~~~~--------------------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         146 DKEKALENYRQIKEFIEG--------------------TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             CHHHHHHHHHHHHHHHTT--------------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHhcc--------------------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            876544333333322110                    1123578999999999999999999988765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=8.8e-22  Score=162.80  Aligned_cols=173  Identities=18%  Similarity=0.223  Sum_probs=105.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ..+++|+|+|++|||||||+|+|++.....            +...+.++...                  ..+.+.   
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~------------~~~~~~t~~~~------------------~~~~~~---   52 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTTRDP------------------VDDEVF---   52 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC------------------------CCEEEE---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcce------------eeccccccccc------------------ceeeec---
Confidence            457899999999999999999999865431            22222222000                  001111   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh------hhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT------WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~------~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                                      ..+..+.++||||+.....      .......+...+  ..+|++++++|+..++..+...   
T Consensus        53 ----------------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~dvii~v~d~~~~~~~~~~~---  111 (186)
T d1mkya2          53 ----------------IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQDQR---  111 (186)
T ss_dssp             ----------------ETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHHHH---
T ss_pred             ----------------cCCceeeeeccCCccccccccccccccchhHHHHHHH--hcCCEEEEeecccccchhhHHH---
Confidence                            2356788999999765311      111112222222  2369999999999887766532   


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAG  300 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~g  300 (324)
                        .+..+...+.|+|+|+||+|+......  ....+.....             +..     .+..+.+++++||++|.|
T Consensus       112 --~~~~~~~~~~~~i~v~nK~D~~~~~~~--~~~~~~~~~~-------------~~~-----~~~~~~~i~~vSa~~g~g  169 (186)
T d1mkya2         112 --MAGLMERRGRASVVVFNKWDLVVHREK--RYDEFTKLFR-------------EKL-----YFIDYSPLIFTSADKGWN  169 (186)
T ss_dssp             --HHHHHHHTTCEEEEEEECGGGSTTGGG--CHHHHHHHHH-------------HHC-----GGGTTSCEEECBTTTTBS
T ss_pred             --HHHHHHHcCCceeeeccchhhhcchhh--hhhhHHHHHH-------------HHh-----cccCCCeEEEEeCCCCCC
Confidence              123455678999999999999765421  1111111110             000     234567899999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 020549          301 IEAYFKAVEESAQEF  315 (324)
Q Consensus       301 v~~l~~~i~~~~~~~  315 (324)
                      +++|++.|.+.+..+
T Consensus       170 v~~L~~~i~~~~~~~  184 (186)
T d1mkya2         170 IDRMIDAMNLAYASY  184 (186)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999998877654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=5.7e-21  Score=159.20  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=102.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...++|+|+|++|||||||+|+|++......           +...+.++.                      .....  
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~-----------~~~~~~~t~----------------------~~~~~--   65 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLAR-----------TSSKPGKTQ----------------------TLNFY--   65 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------C----------------------CEEEE--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEE-----------eecccceee----------------------ecccc--
Confidence            3445799999999999999999998643110           111111110                      00000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhh----hhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                                      .....+.++|++|......    +......+...... ..+|++++++|+.+++...+     .
T Consensus        66 ----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~-----~  124 (195)
T d1svia_          66 ----------------IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD-----V  124 (195)
T ss_dssp             ----------------EETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-----H
T ss_pred             ----------------cccccceEEEEEeeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccc-----c
Confidence                            1144677888888544311    11111122222222 34589999999988876554     2


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                      ..++.+...++|+++|+||+|+.+.....+..+.+...   +                   ......+++++||++|+|+
T Consensus       125 ~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~---l-------------------~~~~~~~~~~~SA~~~~gi  182 (195)
T d1svia_         125 QMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT---L-------------------NIDPEDELILFSSETKKGK  182 (195)
T ss_dssp             HHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH---H-------------------TCCTTSEEEECCTTTCTTH
T ss_pred             ccccccccccCcceechhhccccCHHHHHHHHHHHHHH---h-------------------cccCCCCEEEEeCCCCCCH
Confidence            22345666789999999999998876554444333311   1                   1234578999999999999


Q ss_pred             HHHHHHHHHHH
Q 020549          302 EAYFKAVEESA  312 (324)
Q Consensus       302 ~~l~~~i~~~~  312 (324)
                      ++|++.|.+.+
T Consensus       183 ~el~~~i~~~l  193 (195)
T d1svia_         183 DEAWGAIKKMI  193 (195)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-22  Score=164.52  Aligned_cols=167  Identities=14%  Similarity=0.162  Sum_probs=101.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..+.++|+|+|.+|||||||+++|++..+...+.+       +.... +...+.+.                        
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~-------t~~~~-~~~~~~~~------------------------   50 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-------TIEDS-YTKICSVD------------------------   50 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCT-------TCCEE-EEEEEEET------------------------
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccc-------ccccc-eeeEeccC------------------------
Confidence            34568999999999999999999998877643211       11000 00000000                        


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYA  223 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~  223 (324)
                                       +..+.+.+|||+|+.++..  ...    ..++  .+|++++|+|....  +.....|...+  
T Consensus        51 -----------------~~~~~l~~~d~~g~~~~~~--~~~----~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i--  103 (173)
T d2fn4a1          51 -----------------GIPARLDILDTAGQEEFGA--MRE----QYMR--AGHGFLLVFAINDRQSFNEVGKLFTQI--  103 (173)
T ss_dssp             -----------------TEEEEEEEEECCCTTTTSC--CHH----HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--
T ss_pred             -----------------Ceeeeeecccccccccccc--ccc----hhhc--cceeeeeecccccccccchhhhhhHHH--
Confidence                             2245788999999988622  111    1111  24788888887543  22222332211  


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      .+.....+.|+|+|+||+|+......  ..+....+.+                     .  .+.++++|||++|.||++
T Consensus       104 ~~~~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~e~Sak~g~gv~e  158 (173)
T d2fn4a1         104 LRVKDRDDFPVVLVGNKADLESQRQV--PRSEASAFGA---------------------S--HHVAYFEASAKLRLNVDE  158 (173)
T ss_dssp             HHHHTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHH---------------------H--TTCEEEECBTTTTBSHHH
T ss_pred             HHHhccCCCceEEEEEeechhhcccc--chhhhhHHHH---------------------h--cCCEEEEEeCCCCcCHHH
Confidence            12233467899999999998754221  0011111111                     1  246899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEFM  316 (324)
Q Consensus       304 l~~~i~~~~~~~~  316 (324)
                      +|..|++.+....
T Consensus       159 ~f~~l~~~i~k~~  171 (173)
T d2fn4a1         159 AFEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=8e-22  Score=160.82  Aligned_cols=164  Identities=15%  Similarity=0.158  Sum_probs=97.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      -+||+++|.+|||||||+++|++..+.....++.            +.+....                  .+...    
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~------------~~~~~~~------------------~~~~~----   50 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV------------GIDFKVK------------------TIYRN----   50 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCC------------SEEEEEE------------------EEEET----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCccccccc------------ccceeeE------------------EEEee----
Confidence            3689999999999999999999887654321110            0000000                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    .....+.||||||++++..       +... .-..+|++|+|+|......- ..+...........
T Consensus        51 --------------~~~~~l~~wDt~G~e~~~~-------~~~~-~~~~ad~~ilv~d~~~~~s~-~~~~~~~~~~~~~~  107 (169)
T d3raba_          51 --------------DKRIKLQIWDTAGQERYRT-------ITTA-YYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYS  107 (169)
T ss_dssp             --------------TEEEEEEEEEECCSGGGHH-------HHHT-TTTTCCEEEEEEETTCHHHH-HTHHHHHHHHHHHC
T ss_pred             --------------cceEEEEEEECCCchhhHH-------HHHH-HHhcCCEEEEEEECccchhh-hhhhhhhhhhhccc
Confidence                          1245788999999887521       1111 11346899999988653211 11111122223344


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ....|+++|+||+|+.......  .++...+.+                     +  .+.++++|||++|.||+++|+.|
T Consensus       108 ~~~~~iivv~nK~D~~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_         108 WDNAQVLLVGNKCDMEDERVVS--SERGRQLAD---------------------H--LGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             CSCCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECBTTTTBSHHHHHHHH
T ss_pred             CCcceEEEEEeecccccccccc--hhhhHHHHH---------------------H--cCCEEEEecCCCCcCHHHHHHHH
Confidence            4678999999999986543210  011111111                     1  14689999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      ++.+.+
T Consensus       163 ~~~i~e  168 (169)
T d3raba_         163 VDVICE  168 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            987753

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=4.5e-22  Score=160.68  Aligned_cols=157  Identities=15%  Similarity=0.249  Sum_probs=98.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +++|+++|++|||||||+|+|++.....            +...++++....                  .+.+.     
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~~~~~~~~------------------~~~~~-----   45 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTTRDVL------------------REHIH-----   45 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCCCSCE------------------EEEEE-----
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceE------------eecccccccceE------------------eeeee-----
Confidence            5789999999999999999999875442            222232221000                  01111     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh-ccCCcEEEEEEcCCCCCCc--hhHHHhHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANP--MTFMSNMLYACS  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vvD~~~~~~~--~~~~~~~~~~~~  225 (324)
                                    ..+..+.++||||+.+...... ...+..... ...+|++++++|+......  ...|...+   .
T Consensus        46 --------------~~~~~~~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~  107 (161)
T d2gj8a1          46 --------------IDGMPLHIIDTAGLREASDEVE-RIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFI---A  107 (161)
T ss_dssp             --------------ETTEEEEEEECCCCSCCSSHHH-HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHH---H
T ss_pred             --------------ccCceeeeccccccccccccch-hHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhh---h
Confidence                          2356788999999877521111 111111111 2457999999998765543  23332222   1


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                       ....++|+++|+||+|+......      +                          ......+++++||++|.||++|+
T Consensus       108 -~~~~~~~iilv~NK~Dl~~~~~~------~--------------------------~~~~~~~~~~iSAk~~~gi~~L~  154 (161)
T d2gj8a1         108 -RLPAKLPITVVRNKADITGETLG------M--------------------------SEVNGHALIRLSARTGEGVDVLR  154 (161)
T ss_dssp             -HSCTTCCEEEEEECHHHHCCCCE------E--------------------------EEETTEEEEECCTTTCTTHHHHH
T ss_pred             -hcccccceeeccchhhhhhhHHH------H--------------------------HHhCCCcEEEEECCCCCCHHHHH
Confidence             12347999999999998764311      0                          01235789999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      +.|.+.
T Consensus       155 ~~l~~~  160 (161)
T d2gj8a1         155 NHLKQS  160 (161)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=160.91  Aligned_cols=173  Identities=14%  Similarity=0.121  Sum_probs=101.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ...+||+|+|.+|||||||+++|++..+...+.+++       .......                        +...  
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti-------~~~~~~~------------------------~~~~--   53 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-------FDHYAVS------------------------VTVG--   53 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS-------CCCEEEE------------------------EESS--
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCce-------eeeeeEE------------------------EeeC--
Confidence            456789999999999999999999987765433211       1000000                        0000  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cch-hHHHhHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPM-TFMSNMLYA  223 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~-~~~~~~~~~  223 (324)
                                      .....+.+|||+|++++..  ....      .-..+|++++|+|..+..  ... .+|...   
T Consensus        54 ----------------~~~~~l~i~D~~g~e~~~~--~~~~------~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~---  106 (185)
T d2atxa1          54 ----------------GKQYLLGLYDTAGQEDYDR--LRPL------SYPMTDVFLICFSVVNPASFQNVKEEWVPE---  106 (185)
T ss_dssp             ----------------SCEEEEEEECCCCSSSSTT--TGGG------GCTTCSEEEEEEETTCHHHHHHHHHTHHHH---
T ss_pred             ----------------CceEEeecccccccchhhh--hhhh------cccccceeeeccccchHHHHHHHHHHHHHH---
Confidence                            2245678999999987621  1110      113368888888875432  111 122221   


Q ss_pred             HHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHH
Q 020549          224 CSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       224 ~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~  303 (324)
                      .+ ....+.|+++|+||+|+.+............       .     +.+..+.+..+...+...++++|||++|.||++
T Consensus       107 ~~-~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~-------~-----r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e  173 (185)
T d2atxa1         107 LK-EYAPNVPFLLIGTQIDLRDDPKTLARLNDMK-------E-----KPICVEQGQKLAKEIGACCYVECSALTQKGLKT  173 (185)
T ss_dssp             HH-HHSTTCCEEEEEECTTSTTCHHHHHHHTTTT-------C-----CCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHH
T ss_pred             HH-hcCCCCCeeEeeeccccccchhhhhhhhhcc-------c-----ccccHHHHHHHHHHcCCCEEEEecCCCCcCHHH
Confidence            12 2345789999999999987653322111110       0     000011111111223347899999999999999


Q ss_pred             HHHHHHHHH
Q 020549          304 YFKAVEESA  312 (324)
Q Consensus       304 l~~~i~~~~  312 (324)
                      +|+.+++.+
T Consensus       174 ~F~~li~~i  182 (185)
T d2atxa1         174 VFDEAIIAI  182 (185)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.6e-22  Score=162.94  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..||+++|.+|||||||+++|++..+...+.++       +........                       ....    
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~t-------i~~~~~~~~-----------------------~~~~----   47 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT-------IGVDFLERQ-----------------------IQVN----   47 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCC-------CSSSEEEEE-----------------------EEET----
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccc-------cccccceee-----------------------eeec----
Confidence            368999999999999999999987765433221       110000000                       0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||+|+.++..  ...    ..+  ..++++++|+|..+.  +.....|...+   ..
T Consensus        48 --------------~~~~~~~i~d~~g~~~~~~--~~~----~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i---~~  102 (164)
T d1z2aa1          48 --------------DEDVRLMLWDTAGQEEFDA--ITK----AYY--RGAQACVLVFSTTDRESFEAISSWREKV---VA  102 (164)
T ss_dssp             --------------TEEEEEEEECCTTGGGTTC--CCH----HHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH---HH
T ss_pred             --------------CceeeeeeeccCCccchhh--hhh----hhh--ccCceEEEEEeccchhhhhhcccccccc---cc
Confidence                          2245788999999887622  111    112  245888888887542  22333343222   11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                       ...++|+++|+||+|+.+.....  .++.+.+.+                     . . +++++++||++|.||+++|+
T Consensus       103 -~~~~~~iilVgnK~Dl~~~~~v~--~~~~~~~~~---------------------~-~-~~~~~e~Sak~g~~v~e~f~  156 (164)
T d1z2aa1         103 -EVGDIPTALVQNKIDLLDDSCIK--NEEAEGLAK---------------------R-L-KLRFYRTSVKEDLNVSEVFK  156 (164)
T ss_dssp             -HHCSCCEEEEEECGGGGGGCSSC--HHHHHHHHH---------------------H-H-TCEEEECBTTTTBSSHHHHH
T ss_pred             -cCCCceEEEeeccCCcccceeee--ehhhHHHHH---------------------H-c-CCEEEEeccCCCcCHHHHHH
Confidence             23579999999999997643210  011111111                     1 1 46899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|++.+.
T Consensus       157 ~l~~~~l  163 (164)
T d1z2aa1         157 YLAEKHL  163 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=161.14  Aligned_cols=171  Identities=13%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .||+|+|.+|||||||+++|++..+...+.+++.       ... ...                       +...     
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-------~~~-~~~-----------------------~~~~-----   46 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-------ENY-VAD-----------------------IEVD-----   46 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-------EEE-EEE-----------------------EEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-------eec-ccc-----------------------cccc-----
Confidence            5799999999999999999999877654332210       000 000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCch-hHHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPM-TFMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~-~~~~~~~~~~~~  226 (324)
                                   .....+.||||+|++.+......      +  -..+|++++|+|....  +... .+|...+   . 
T Consensus        47 -------------~~~~~l~i~D~~g~~~~~~~~~~------~--~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~---~-  101 (177)
T d1kmqa_          47 -------------GKQVELALWDTAGLEDYDRLRPL------S--YPDTDVILMCFSIDSPDSLENIPEKWTPEV---K-  101 (177)
T ss_dssp             -------------TEEEEEEEEEECCSGGGTTTGGG------G--CTTCSEEEEEEETTCHHHHHHHHHTHHHHH---H-
T ss_pred             -------------ccceeeeccccCccchhcccchh------h--cccchhhhhhcccchhHHHHHHHHHHHHHH---H-
Confidence                         22457889999998876221111      0  1346888888887543  2221 1232222   2 


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|++||+||+|+.+.....+......       .     ..+..+.+..+..-....++++|||++|.||+++|+
T Consensus       102 ~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~-------~-----~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~  169 (177)
T d1kmqa_         102 HFCPNVPIILVGNKKDLRNDEHTRRELAKMK-------Q-----EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE  169 (177)
T ss_dssp             HHSTTSCEEEEEECGGGTTCHHHHHHHHHTT-------C-----CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred             HhCCCCceEEeeecccccchhhHHHHHHHhh-------c-----ccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHH
Confidence            2235799999999999987643221111000       0     000011111111122346899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|++.+.
T Consensus       170 ~i~~~~l  176 (177)
T d1kmqa_         170 MATRAAL  176 (177)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.1e-22  Score=160.72  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=97.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|.+|||||||+|+|++.....            ++..++++.....                  ....      
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~------------~~~~~~~~~~~~~------------------~~~~------   44 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAI------------VTDIPGTTRDVIS------------------EEIV------   44 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCC------------CCCSSCCSSCSCC------------------EEEE------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee------------eecccccccccee------------------EEEE------
Confidence            479999999999999999999875432            2223332210000                  0000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                   ..+..+.+|||||+............+.+.+.. ..+|++++|+|+.++.......   +  .  ..
T Consensus        45 -------------~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~---~--~--~~  104 (160)
T d1xzpa2          45 -------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK---I--L--ER  104 (160)
T ss_dssp             -------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH---H--H--HH
T ss_pred             -------------eCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhh---h--h--hh
Confidence                         235678899999965431111100011111111 2369999999998876544311   1  1  12


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ....++++++||+|+.+.....+...                            .+....+++++||++|.||++|++.|
T Consensus       105 ~~~~~~i~~~~k~d~~~~~~~~~~~~----------------------------~~~~~~~~~~vSA~~g~gi~~L~~~I  156 (160)
T d1xzpa2         105 IKNKRYLVVINKVDVVEKINEEEIKN----------------------------KLGTDRHMVKISALKGEGLEKLEESI  156 (160)
T ss_dssp             HTTSSEEEEEEECSSCCCCCHHHHHH----------------------------HHTCSTTEEEEEGGGTCCHHHHHHHH
T ss_pred             cccccceeeeeeccccchhhhHHHHH----------------------------HhCCCCcEEEEECCCCCCHHHHHHHH
Confidence            25678999999999987653222211                            22345789999999999999999998


Q ss_pred             HH
Q 020549          309 EE  310 (324)
Q Consensus       309 ~~  310 (324)
                      .+
T Consensus       157 ~k  158 (160)
T d1xzpa2         157 YR  158 (160)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.4e-21  Score=160.05  Aligned_cols=167  Identities=16%  Similarity=0.203  Sum_probs=93.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.++.     .........  .                     . ..     
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~-----~~~~~~~~~--~---------------------~-~~-----   48 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-----GADFLTKEV--T---------------------V-DG-----   48 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---C-----CCSCEEEEE--C---------------------C-SS-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCccc-----ccceeeeee--e---------------------e-cC-----
Confidence            689999999999999999999887765432211     000000000  0                     0 00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH-
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI-  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~-  226 (324)
                                   .....+.+|||||++++.....        ..-..++++++++|.....  .....|...+..... 
T Consensus        49 -------------~~~~~~~~~d~~g~~~~~~~~~--------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  107 (175)
T d1ky3a_          49 -------------DKVATMQVWDTAGQERFQSLGV--------AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANV  107 (175)
T ss_dssp             -------------SCCEEEEEECCC------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             -------------cccccceeeccCCchhhhhHHH--------HHhhccceEEEEeecccccccchhhhcchhhhhhhhh
Confidence                         1134578999999877521100        0113468888888875432  233344332211110 


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.+...... .+..+.+.                      ..+...++++|||++|.||+++|.
T Consensus       108 ~~~~~~piilv~nK~Dl~~~~~~v~-~~~~~~~~----------------------~~~~~~~~~e~SA~~g~gv~e~f~  164 (175)
T d1ky3a_         108 NSPETFPFVILGNKIDAEESKKIVS-EKSAQELA----------------------KSLGDIPLFLTSAKNAINVDTAFE  164 (175)
T ss_dssp             SCTTTCCEEEEEECTTSCGGGCCSC-HHHHHHHH----------------------HHTTSCCEEEEBTTTTBSHHHHHH
T ss_pred             cccccCcEEEEecccchhhhhcchh-HHHHHHHH----------------------HHcCCCeEEEEeCCCCcCHHHHHH
Confidence            1124689999999999876432100 01111111                      123457899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|++.+.+
T Consensus       165 ~l~~~~l~  172 (175)
T d1ky3a_         165 EIARSALQ  172 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.2e-22  Score=162.79  Aligned_cols=162  Identities=19%  Similarity=0.185  Sum_probs=96.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+||+|+|.+|||||||+++|++..+......+.     +....  ...+                       ...    
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~-----~~~~~--~~~~-----------------------~~~----   50 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-----GVDFM--IKTV-----------------------EIN----   50 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC-----SEEEE--EEEE-----------------------EET----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccc-----cceEE--EEEE-----------------------EEC----
Confidence            3689999999999999999999887654321100     00000  0000                       000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||||++++..       +... .-..++++++|+|.....  .....|   ...+..
T Consensus        51 --------------~~~~~l~i~Dt~G~e~~~~-------~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~i~~  105 (171)
T d2ew1a1          51 --------------GEKVKLQIWDTAGQERFRS-------ITQS-YYRSANALILTYDITCEESFRCLPEW---LREIEQ  105 (171)
T ss_dssp             --------------TEEEEEEEEEECCSGGGHH-------HHGG-GSTTCSEEEEEEETTCHHHHHTHHHH---HHHHHH
T ss_pred             --------------CEEEEEEEEECCCchhhHH-------HHHH-HHhccceEEEeeecccchhhhhhhhh---hhhhcc
Confidence                          2245788999999877621       1110 113467888888865432  222222   222223


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+|+|+||+|+.......  .++...+.                      +. .+.++++|||++|.||+++|.
T Consensus       106 ~~~~~~~~ilvgnK~D~~~~~~v~--~~~~~~~~----------------------~~-~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1         106 YASNKVITVLVGNKIDLAERREVS--QQRAEEFS----------------------EA-QDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             HSCTTCEEEEEEECGGGGGGCSSC--HHHHHHHH----------------------HH-HTCCEEECCTTTCTTHHHHHH
T ss_pred             cccccccEEEEEeecccccccchh--hhHHHHHH----------------------Hh-CCCEEEEEccCCCCCHHHHHH
Confidence            334578999999999987543210  01111111                      11 246899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|++.+..
T Consensus       161 ~l~~~l~~  168 (171)
T d2ew1a1         161 DLACRLIS  168 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.1e-22  Score=160.36  Aligned_cols=160  Identities=12%  Similarity=0.099  Sum_probs=88.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.+|||||||+++|.+..+..... +.      ..  .+...+.                       ..     
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~-~~------~~--~~~~~i~-----------------------~~-----   44 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAE-AA------GH--TYDRSIV-----------------------VD-----   44 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------------CE--EEEEEEE-----------------------ET-----
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCC-ee------ee--eecceee-----------------------cc-----
Confidence            589999999999999999998875542111 00      00  0000000                       00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||++++..      .....+  ..+|++++|+|....  +.....|...+   ...
T Consensus        45 -------------~~~~~l~i~D~~g~e~~~~------~~~~~~--~~~d~~ilv~d~t~~~s~~~~~~~~~~i---~~~  100 (168)
T d2gjsa1          45 -------------GEEASLMVYDIWEQDGGRW------LPGHCM--AMGDAYVIVYSVTDKGSFEKASELRVQL---RRA  100 (168)
T ss_dssp             -------------TEEEEEEEEECC-------------CHHHHH--TSCSEEEEEEETTCHHHHHHHHHHHHHH---HHH
T ss_pred             -------------ccccceeeeecccccccce------ecccch--hhhhhhceeccccccccccccccccchh---hcc
Confidence                         2246788999999887621      111122  235788888886542  22222332222   222


Q ss_pred             -hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          228 -YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       228 -~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                       ....+|+++|+||+|+.......  ..+.+.+.+                     .  .++++++|||++|.||+++|.
T Consensus       101 ~~~~~~piilvgnK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~~~~v~~~f~  155 (168)
T d2gjsa1         101 RQTDDVPIILVGNKSDLVRSREVS--VDEGRACAV---------------------V--FDCKFIETSAALHHNVQALFE  155 (168)
T ss_dssp             CC--CCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTSEEEECBTTTTBSHHHHHH
T ss_pred             cccccceEEEeecccchhhhcchh--HHHHHHHHH---------------------h--cCCEEEEEeCCCCcCHHHHHH
Confidence             23568999999999987643210  011111111                     1  246899999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          307 AVEESAQEF  315 (324)
Q Consensus       307 ~i~~~~~~~  315 (324)
                      .|++.+...
T Consensus       156 ~l~~~i~~~  164 (168)
T d2gjsa1         156 GVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.1e-22  Score=161.62  Aligned_cols=160  Identities=17%  Similarity=0.184  Sum_probs=97.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+++|.+|||||||+++|++..+...+...+     .........                         ...     
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~-----~~~~~~~~~-------------------------~~~-----   45 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI-----GIDFLSKTM-------------------------YLE-----   45 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC-----SEEEEEEEE-------------------------ECS-----
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccce-----eeeccceee-------------------------ccC-----
Confidence            479999999999999999999887764332111     000000000                         000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||+|++++..  ..    ...+  ..+|++++++|.....  .....|..   .....
T Consensus        46 -------------~~~~~~~i~d~~g~~~~~~--~~----~~~~--~~~~~~ilv~d~~~~~s~~~i~~~~~---~~~~~  101 (164)
T d1yzqa1          46 -------------DRTIRLQLWDTAGQERFRS--LI----PSYI--RDSAAAVVVYDITNVNSFQQTTKWID---DVRTE  101 (164)
T ss_dssp             -------------SCEEEEEEEEECCSGGGGG--GH----HHHH--TTCSEEEEEEETTCHHHHHTHHHHHH---HHHHH
T ss_pred             -------------CCceeeeecccCCcchhcc--ch----HHHh--hccceEEEeeccccccchhhhHhhHH---HHHHh
Confidence                         1245678999999987622  11    1111  3457888888875432  22233322   22333


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.+....  ..++...+.+                     +  .++++++|||++|.||+++|..
T Consensus       102 ~~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~---------------------~--~~~~~~e~SAk~g~~v~e~f~~  156 (164)
T d1yzqa1         102 RGSDVIIMLVGNKTDLADKRQV--SIEEGERKAK---------------------E--LNVMFIETSAKAGYNVKQLFRR  156 (164)
T ss_dssp             HTTSSEEEEEEECTTCGGGCCS--CHHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHHHH
T ss_pred             cCCCceEEEEecccchhhhhhh--hHHHHHHHHH---------------------H--cCCEEEEecCCCCcCHHHHHHH
Confidence            4567999999999998754321  1111111111                     1  1468999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |++.++
T Consensus       157 i~~~l~  162 (164)
T d1yzqa1         157 VAAALP  162 (164)
T ss_dssp             HHHHSC
T ss_pred             HHHhhC
Confidence            998765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.84  E-value=9e-22  Score=160.41  Aligned_cols=161  Identities=14%  Similarity=0.188  Sum_probs=95.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+||+|+|.+|||||||+++|++..+...+.+++       . ..+...+                       ...    
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~-------~-~~~~~~~-----------------------~~~----   48 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-------A-DSYRKKV-----------------------VLD----   48 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC-------C-EEEEEEE-----------------------EET----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcc-------c-ccccccc-----------------------ccc----
Confidence            3689999999999999999999887764332111       0 0000000                       000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+||++|+.++..      .....++  .+|.+++|+|....  +.....|...+  .+.
T Consensus        49 --------------~~~~~l~i~d~~g~~~~~~------~~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i--~~~  104 (168)
T d1u8za_          49 --------------GEEVQIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAATADFREQI--LRV  104 (168)
T ss_dssp             --------------TEEEEEEEEECCC---CHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HHH
T ss_pred             --------------cccccccccccccccchhh------hhhhccc--ccceeEEEeeccchhhhhhHHHHHHHH--HHh
Confidence                          2246788999999877521      1111122  25788888887552  22223332222  122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++|+||+|+.....+.  .++...+.+                     .  .++++++|||++|.||+++|.
T Consensus       105 ~~~~~~piiivgnK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~g~gv~e~f~  159 (168)
T d1u8za_         105 KEDENVPFLLVGNKSDLEDKRQVS--VEEAKNRAD---------------------Q--WNVNYVETSAKTRANVDKVFF  159 (168)
T ss_dssp             HCCTTSCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHHH
T ss_pred             hCCCCCcEEEEecccccccccccc--HHHHHHHHH---------------------H--cCCeEEEEcCCCCcCHHHHHH
Confidence            234678999999999986542210  011111111                     1  146899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|++.+.
T Consensus       160 ~l~~~i~  166 (168)
T d1u8za_         160 DLMREIR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.84  E-value=3.3e-21  Score=157.88  Aligned_cols=159  Identities=19%  Similarity=0.246  Sum_probs=97.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .+..+|+++|++|||||||+++|.+..+....    ..    .       .++...                   +.   
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~----~~----~-------~~~~~~-------------------i~---   56 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT----PT----Q-------GFNIKS-------------------VQ---   56 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE----EE----T-------TEEEEE-------------------EE---
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcce----ee----e-------eeeEEE-------------------ec---
Confidence            45689999999999999999999887664211    00    0       000000                   00   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH-HHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACS  225 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~-~~~~  225 (324)
                                      ..+..+.+||++|+.++..      .....+  ..+|.+++++|..+...... ....+ ....
T Consensus        57 ----------------~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~~~ii~v~d~~d~~s~~~-~~~~~~~~~~  111 (176)
T d1fzqa_          57 ----------------SQGFKLNVWDIGGQRKIRP------YWRSYF--ENTDILIYVIDSADRKRFEE-TGQELTELLE  111 (176)
T ss_dssp             ----------------ETTEEEEEEECSSCGGGHH------HHHHHH--TTCSEEEEEEETTCGGGHHH-HHHHHHHHTT
T ss_pred             ----------------cCCeeEeEeeccccccchh------HHHHHh--hccceeEEeeccccccchhh-hhhhhhhhhh
Confidence                            2256789999999877521      111122  34689999999875432211 11111 1112


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~  303 (324)
                      .....++|+++|+||+|+.+........+.+.                     .   .+  ....++++|||++|+||++
T Consensus       112 ~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~SA~tg~gv~e  167 (176)
T d1fzqa_         112 EEKLSCVPVLIFANKQDLLTAAPASEIAEGLN---------------------L---HTIRDRVWQIQSCSALTGEGVQD  167 (176)
T ss_dssp             CGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHHH
T ss_pred             hhccCCCeEEEEEEeccccccccHHHHHHHHH---------------------H---HHHHhcCCEEEEEeCCCCCCHHH
Confidence            22335789999999999987543222221111                     0   01  1245789999999999999


Q ss_pred             HHHHHHHH
Q 020549          304 YFKAVEES  311 (324)
Q Consensus       304 l~~~i~~~  311 (324)
                      +|++|.+.
T Consensus       168 ~~~~l~~~  175 (176)
T d1fzqa_         168 GMNWVCKN  175 (176)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.1e-21  Score=162.20  Aligned_cols=167  Identities=19%  Similarity=0.266  Sum_probs=96.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+|+|+||||||||+|+|++....             +...+++|.-.                  +-+....      
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~-------------~~~~~~~T~~~------------------~~~~~~~------   45 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPK-------------IADYHFTTLVP------------------NLGMVET------   45 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE-------------ESSTTSSCCCC------------------CEEEEEC------
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCc-------------eecCCCceEee------------------eeceeEe------
Confidence            4899999999999999999876432             12222222100                  0011110      


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhh-hhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                  ..+..+.+|||||+.+.... ........+.+.  .++.++++++.....  .....+..... ....
T Consensus        46 ------------~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~--~~~~i~~~v~~~~~~~~~~~~~~~~~~~-~~~~  110 (185)
T d1lnza2          46 ------------DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--RTRVIVHVIDMSGLEGRDPYDDYLTINQ-ELSE  110 (185)
T ss_dssp             ------------SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--HCCEEEEEEESSCSSCCCHHHHHHHHHH-HHHH
T ss_pred             ------------cCCcEEEEecCCCcccCchHHHHHHHHHHHHHH--Hhhhhhheeeecccccchhhhhhhhhhh-ccch
Confidence                        12456899999997553211 112222333332  256777777654332  22221111111 1111


Q ss_pred             h---hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          228 Y---KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       228 ~---~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      .   ..++|+++|+||+|+......   .+.+.   +                     .+....+++++||++|.|+++|
T Consensus       111 ~~~~~~~kp~ivv~NK~Dl~~~~~~---~~~~~---~---------------------~~~~~~~v~~iSA~~g~Gi~~L  163 (185)
T d1lnza2         111 YNLRLTERPQIIVANKMDMPEAAEN---LEAFK---E---------------------KLTDDYPVFPISAVTREGLREL  163 (185)
T ss_dssp             SCSSTTTSCBCBEEECTTSTTHHHH---HHHHH---H---------------------HCCSCCCBCCCSSCCSSTTHHH
T ss_pred             hhhhccCCcchhhccccchHhHHHH---HHHHH---H---------------------HhccCCcEEEEECCCCCCHHHH
Confidence            1   236899999999999875422   11111   1                     2234678999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          305 FKAVEESAQEFM  316 (324)
Q Consensus       305 ~~~i~~~~~~~~  316 (324)
                      ++.|.+.+++.+
T Consensus       164 ~~~i~~~L~~~p  175 (185)
T d1lnza2         164 LFEVANQLENTP  175 (185)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHhhhhCC
Confidence            999999986544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-21  Score=159.71  Aligned_cols=160  Identities=17%  Similarity=0.224  Sum_probs=95.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+||+|+|.+|||||||+++|++..+......              +...+..                  .....   .
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~--------------~~~~~~~------------------~~~~~---~   48 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--------------TIGVEFG------------------TRIIE---V   48 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTT--------------SCCCCEE------------------EEEEE---E
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccc--------------cccccce------------------eEEEE---E
Confidence            36899999999999999999998876543211              0000000                  00000   0


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                   ......+.+|||||++++..      .....+  ..+|++++|+|..+.  +.....|   +..+..
T Consensus        49 -------------~~~~~~l~i~D~~g~~~~~~------~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~---~~~~~~  104 (166)
T d1z0fa1          49 -------------SGQKIKLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRRSTYNHLSSW---LTDARN  104 (166)
T ss_dssp             -------------TTEEEEEEEEECTTGGGTCH------HHHHHH--HTCSEEEEEEETTCHHHHHTHHHH---HHHHHH
T ss_pred             -------------CCEEEEEEEeccCCchhHHH------HHHHHh--cCCcEEEEEeccCchHHHHHHHHH---HHHHHh
Confidence                         02245788999999887621      111122  235777888876542  2222223   222233


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+++|+||+|+.......  .++...+.+                     .  .++++++|||++|.||+++|.
T Consensus       105 ~~~~~~~iilvgnK~Dl~~~~~~~--~~~~~~~~~---------------------~--~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1         105 LTNPNTVIILIGNKADLEAQRDVT--YEEAKQFAE---------------------E--NGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             HSCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECCTTTCTTHHHHHH
T ss_pred             hccccceEEEEcccccchhhcccH--HHHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence            445678999999999986543210  111111111                     1  246899999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|.+.+
T Consensus       160 ~i~~~i  165 (166)
T d1z0fa1         160 EAAKKI  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.9e-22  Score=162.31  Aligned_cols=158  Identities=21%  Similarity=0.231  Sum_probs=96.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+++|++|||||||+++|++..+...+.+++     +.........                         .      
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti-----~~~~~~~~~~-------------------------~------   47 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-----GVEVHPLVFH-------------------------T------   47 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEEET-----TEEEEEEEEC-------------------------B------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccce-----eccccccccc-------------------------c------
Confidence            589999999999999999999987766544332     0000000000                         0      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                  ......+.+|||||+.++......      .  -..++++++|+|...  ++.....|....   .. 
T Consensus        48 ------------~~~~~~l~i~D~~g~~~~~~~~~~------~--~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~---~~-  103 (170)
T d1i2ma_          48 ------------NRGPIKFNVWDTAGQEKFGGLRDG------Y--YIQAQCAIIMFDVTSRVTYKNVPNWHRDL---VR-  103 (170)
T ss_dssp             ------------TTCCEEEEEEECTTHHHHSSCGGG------G--TTTCCEEEEEEETTSGGGGTTHHHHHHHH---HH-
T ss_pred             ------------ccccccccccccccccccceecch------h--cccccchhhccccccccccchhHHHHHHH---hh-
Confidence                        023567899999998775211110      1  123577788877654  444444443322   11 


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......+    ....                       ....+.++++|||++|.||+++|..
T Consensus       104 ~~~~~piilvgnK~Dl~~~~~~~~----~~~~-----------------------~~~~~~~~~e~Sak~~~~v~e~f~~  156 (170)
T d1i2ma_         104 VCENIPIVLCGNKVDIKDRKVKAK----SIVF-----------------------HRKKNLQYYDISAKSNYNFEKPFLW  156 (170)
T ss_dssp             HHCSCCEEEEEECCCCSCSCCTTT----SHHH-----------------------HSSCSSEEEEEBTTTTBTTTHHHHH
T ss_pred             ccCCCceeeecchhhhhhhhhhhH----HHHH-----------------------HHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            135799999999999976542211    1100                       0113578999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |++.+..
T Consensus       157 l~~~l~~  163 (170)
T d1i2ma_         157 LARKLIG  163 (170)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcc
Confidence            9988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.6e-22  Score=161.90  Aligned_cols=161  Identities=15%  Similarity=0.187  Sum_probs=96.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|.+|||||||+++|++..+...+.+++       .. .+..    ..                  ....    
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~-------~~-~~~~----~~------------------~~~~----   49 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI-------GA-SFMT----KT------------------VQYQ----   49 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC-------SE-EEEE----EE------------------EEET----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCccccccc-------cc-cccc----cc------------------cccc----
Confidence            4689999999999999999999987764332111       00 0000    00                  0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||+|+.++..  ...    ..+  ..++++++++|...  ++.....|   ......
T Consensus        50 --------------~~~~~~~i~d~~g~~~~~~--~~~----~~~--~~~~~~i~v~d~~~~~s~~~~~~~---~~~~~~  104 (167)
T d1z0ja1          50 --------------NELHKFLIWDTAGLERFRA--LAP----MYY--RGSAAAIIVYDITKEETFSTLKNW---VRELRQ  104 (167)
T ss_dssp             --------------TEEEEEEEEEECCSGGGGG--GTH----HHH--TTCSEEEEEEETTCHHHHHHHHHH---HHHHHH
T ss_pred             --------------ccccceeeeecCCchhhhH--HHH----HHH--hhccceEEEeeechhhhhhhHHHh---hhhhhh
Confidence                          1134567999999887621  111    111  33578888888643  22222223   222233


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+++|+||+|+.+.....  .++...+.+                     .  .++++++|||++|.||+++|.
T Consensus       105 ~~~~~~~iilvgnK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~SAk~~~nV~e~f~  159 (167)
T d1z0ja1         105 HGPPSIVVAIAGNKCDLTDVREVM--ERDAKDYAD---------------------S--IHAIFVETSAKNAININELFI  159 (167)
T ss_dssp             HSCTTSEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--TTCEEEECBTTTTBSHHHHHH
T ss_pred             ccCCcceEEEecccchhccccchh--HHHHHHHHH---------------------H--cCCEEEEEecCCCCCHHHHHH
Confidence            445779999999999996542210  011111111                     1  246899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|++.+|
T Consensus       160 ~l~~~i~  166 (167)
T d1z0ja1         160 EISRRIP  166 (167)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhCC
Confidence            9998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.3e-22  Score=161.02  Aligned_cols=160  Identities=14%  Similarity=0.159  Sum_probs=95.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+++|++..+...+.++       +... +....                       ...    
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t-------~~~~-~~~~~-----------------------~~~----   47 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPT-------IEDF-YRKEI-----------------------EVD----   47 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-------CCEE-EEEEE-----------------------EET----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCc-------eeee-eeeee-----------------------ecC----
Confidence            478999999999999999999998766432211       1000 00000                       000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+||++|+..+..      .....++  .+|+++++.|...  ++.....|...+  ...
T Consensus        48 --------------~~~~~l~~~d~~g~~~~~~------~~~~~~~--~a~~~ilv~d~~~~~s~~~~~~~~~~~--~~~  103 (167)
T d1kaoa_          48 --------------SSPSVLEILDTAGTEQFAS------MRDLYIK--NGQGFILVYSLVNQQSFQDIKPMRDQI--IRV  103 (167)
T ss_dssp             --------------TEEEEEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHH--HHH
T ss_pred             --------------cceEeeccccCCCcccccc------chHHHhh--cccceeeeeeecchhhhhhhhchhhhh--hhh
Confidence                          2245788999999877521      1111222  2477777777653  222223332211  111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|++||+||+|+........  ++...+.+                     .  .+.++++|||++|.||+++|.
T Consensus       104 ~~~~~~piilvgnK~Dl~~~~~~~~--~~~~~~~~---------------------~--~~~~~~e~Sak~g~~i~e~f~  158 (167)
T d1kaoa_         104 KRYEKVPVILVGNKVDLESEREVSS--SEGRALAE---------------------E--WGCPFMETSAKSKTMVDELFA  158 (167)
T ss_dssp             TTTSCCCEEEEEECGGGGGGCCSCH--HHHHHHHH---------------------H--HTSCEEEECTTCHHHHHHHHH
T ss_pred             ccCCCCCEEEEEEccchhhcccchH--HHHHHHHH---------------------H--cCCeEEEECCCCCcCHHHHHH
Confidence            2235789999999999875432110  11111111                     1  146899999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|++.+
T Consensus       159 ~i~~~i  164 (167)
T d1kaoa_         159 EIVRQM  164 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-21  Score=157.29  Aligned_cols=160  Identities=15%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+.+++       . ..+...                       +...     
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~-------~-~~~~~~-----------------------~~~~-----   47 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-------E-DSYRKQ-----------------------VVID-----   47 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCS-------E-EEEEEE-----------------------EEET-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCcc-------c-eeeccc-----------------------eeee-----
Confidence            689999999999999999999987664322111       0 000000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+||++|+..+...      ....++  .++++++|.|....  +.....|...+.  ...
T Consensus        48 -------------~~~~~l~~~d~~~~~~~~~~------~~~~~~--~~~~~iiv~d~~~~~s~~~~~~~~~~i~--~~~  104 (166)
T d1ctqa_          48 -------------GETCLLDILDTAGQEEYSAM------RDQYMR--TGEGFLCVFAINNTKSFEDIHQYREQIK--RVK  104 (166)
T ss_dssp             -------------TEEEEEEEEEECCCGGGHHH------HHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHH--HHH
T ss_pred             -------------ceeeeeeeeeccCccccccc------hhhhhh--cccccceeecccccccHHHHHHHHHHHH--Hhc
Confidence                         22457889999998876321      111122  24677777777543  333344433221  222


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.......+..   ..+.+                     .  .++++++|||++|.||+++|..
T Consensus       105 ~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~---------------------~--~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_         105 DSDDVPMVLVGNKCDLAARTVESRQA---QDLAR---------------------S--YGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             TCSSCCEEEEEECTTCSCCCSCHHHH---HHHHH---------------------H--HTCCEEECCTTTCTTHHHHHHH
T ss_pred             CCCCCeEEEEecccccccccccHHHH---HHHHH---------------------H--hCCeEEEEcCCCCcCHHHHHHH
Confidence            33568999999999987643221111   11111                     1  1468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9987753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.84  E-value=5.5e-21  Score=159.23  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCC-CeEEEeeccc
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTD  242 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~D  242 (324)
                      .+..+.|+||||+.+|.      ..+.+  ....+|++++|||+.+|+.+++.     +++..+...++ |+|+|+||+|
T Consensus        64 ~~~~~~~iDtPGh~~f~------~~~~~--~~~~aD~allVVda~~G~~~QT~-----~~~~~a~~~~~~~iIv~iNK~D  130 (196)
T d1d2ea3          64 AARHYAHTDCPGHADYV------KNMIT--GTAPLDGCILVVAANDGPMPQTR-----EHLLLARQIGVEHVVVYVNKAD  130 (196)
T ss_dssp             SSCEEEEEECSSHHHHH------HHHHH--TSSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCCEEEEEECGG
T ss_pred             ceeeEEeecCcchHHHH------HHHHH--HHhhcCeEEEEEEcCCCCchhHH-----HHHHHHHHhcCCcEEEEEeccc
Confidence            46789999999977651      11211  12557999999999999988763     22234444454 7888999999


Q ss_pred             cCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccC----------CChHHHHHHHHH
Q 020549          243 VAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSG----------AGIEAYFKAVEE  310 (324)
Q Consensus       243 l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g----------~gv~~l~~~i~~  310 (324)
                      ++..+...+ ...+++.+...+                   .+ ....|++++||++|          .|+.+|++.|.+
T Consensus       131 ~~~~~~~~~~i~~~i~~~l~~~-------------------~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         131 AVQDSEMVELVELEIRELLTEF-------------------GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHT-------------------TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHh-------------------CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            987543322 222333222111                   11 12478999999998          589999998887


Q ss_pred             HHH
Q 020549          311 SAQ  313 (324)
Q Consensus       311 ~~~  313 (324)
                      ++|
T Consensus       192 ~iP  194 (196)
T d1d2ea3         192 YIP  194 (196)
T ss_dssp             HSC
T ss_pred             hCC
Confidence            654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-21  Score=158.80  Aligned_cols=160  Identities=14%  Similarity=0.116  Sum_probs=94.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.+|||||||+++|++..+...+.+++       .. .+....                       ...     
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~-------~~-~~~~~~-----------------------~~~-----   46 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-------ED-TYRQVI-----------------------SCD-----   46 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS-------CE-EEEEEE-----------------------EET-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCcce-------ee-ccccce-----------------------eec-----
Confidence            689999999999999999999987654332211       00 000000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||+|+.++...      ....+.  .+|++++|+|...  ++.....|...+... .-
T Consensus        47 -------------~~~~~l~~~d~~g~~~~~~~------~~~~~~--~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~  104 (171)
T d2erxa1          47 -------------KSICTLQITDTTGSHQFPAM------QRLSIS--KGHAFILVYSITSRQSLEELKPIYEQICEI-KG  104 (171)
T ss_dssp             -------------TEEEEEEEEECCSCSSCHHH------HHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHH-HC
T ss_pred             -------------cccceecccccccccccccc------cccccc--ceeEEEEEeecccccchhcccchhhhhhhh-hc
Confidence                         12356789999998876221      111122  2578888888754  333333333222111 11


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|+++|+||+|+.....+.  .++.+.+.+                     .  .++++++|||++|.||+++|..
T Consensus       105 ~~~~~piilVgnK~Dl~~~~~v~--~~e~~~~~~---------------------~--~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1         105 DVESIPIMLVGNKCDESPSREVQ--SSEAEALAR---------------------T--WKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             ---CCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECBTTTTBSHHHHHHH
T ss_pred             cCCCCcEEEEeeccccccccccc--HHHHHHHHH---------------------H--cCCeEEEEcCCCCcCHHHHHHH
Confidence            23568999999999986543221  011111111                     1  1468999999999999999999


Q ss_pred             HHHHH
Q 020549          308 VEESA  312 (324)
Q Consensus       308 i~~~~  312 (324)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.83  E-value=1e-20  Score=153.31  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=95.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|++|||||||+++|.+..+...        .++..     .    ..                 ..+.     
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~--------~~t~~-----~----~~-----------------~~~~-----   42 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTI--------SPTLG-----F----NI-----------------KTLE-----   42 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSC--------CCCSS-----E----EE-----------------EEEE-----
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcc--------cceEe-----e----ee-----------------eecc-----
Confidence            46899999999999999999988654321        01110     0    00                 0000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    ..+..+.+|||||+..+..  ....      ....++.+++++|..+..........+...+....
T Consensus        43 --------------~~~~~~~~~D~~G~~~~~~--~~~~------~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~  100 (165)
T d1ksha_          43 --------------HRGFKLNIWDVGGQKSLRS--YWRN------YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER  100 (165)
T ss_dssp             --------------ETTEEEEEEEECCSHHHHT--TGGG------GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             --------------ccccceeeeecCcchhhhh--HHHh------hhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc
Confidence                          2356889999999866511  1100      01335899999998664322221111111112223


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ..+.|+++|+||+|+.+.....+....+.                     .   ..  ....++++|||++|+||+++|+
T Consensus       101 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~Sa~~g~gv~e~~~  156 (165)
T d1ksha_         101 LAGATLLIFANKQDLPGALSCNAIQEALE---------------------L---DSIRSHHWRIQGCSAVTGEDLLPGID  156 (165)
T ss_dssp             GTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             cCCCceEEEEeccccccccCHHHHHHHHH---------------------h---hhhhcCCCEEEEEECCCCCCHHHHHH
Confidence            46789999999999976432222211110                     0   01  1235789999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      +|.+.+.
T Consensus       157 ~l~~~i~  163 (165)
T d1ksha_         157 WLLDDIS  163 (165)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.1e-21  Score=158.57  Aligned_cols=173  Identities=16%  Similarity=0.152  Sum_probs=100.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +.+||+|+|.+|||||||+++|++..+...+.+++       ...... .                       +...   
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti-------~~~~~~-~-----------------------~~~~---   49 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-------FDNYSA-N-----------------------VMVD---   49 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS-------CCEEEE-E-----------------------EEET---
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccce-------eeceee-e-----------------------eecc---
Confidence            45799999999999999999999987765433221       100000 0                       0000   


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~~  224 (324)
                                     .....+.+||++|+..+.......        -..+|++++|+|....  +.... +|...+   
T Consensus        50 ---------------~~~~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~---  103 (183)
T d1mh1a_          50 ---------------GKPVNLGLWDTAGQEDYDRLRPLS--------YPQTDVSLICFSLVSPASFENVRAKWYPEV---  103 (183)
T ss_dssp             ---------------TEEEEEEEECCCCSGGGTTTGGGG--------CTTCSEEEEEEETTCHHHHHHHHHTHHHHH---
T ss_pred             ---------------CcceEEEeecccccccchhhhhhc--------ccccceeeeeeccchHHHHHHHHHHHHHHH---
Confidence                           224577899999987762211110        1336888888887642  22221 232222   


Q ss_pred             HHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHH
Q 020549          225 SILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l  304 (324)
                      + ....++|++||+||+|+.......+......            ........+..+..-....++++|||++|.||+++
T Consensus       104 ~-~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~  170 (183)
T d1mh1a_         104 R-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKK------------LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV  170 (183)
T ss_dssp             H-HHSTTSCEEEEEECHHHHTCHHHHHHHHHTT------------CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred             H-HhCCCCcEEEEeecccchhhhhhhhhhhhcc------------ccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHH
Confidence            2 2335789999999999976643221111000            00000000110111123478999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          305 FKAVEESAQ  313 (324)
Q Consensus       305 ~~~i~~~~~  313 (324)
                      |..|++.+.
T Consensus       171 F~~l~~~il  179 (183)
T d1mh1a_         171 FDEAIRAVL  179 (183)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHc
Confidence            999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.9e-21  Score=155.63  Aligned_cols=162  Identities=17%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+|+|++|||||||+++|++..+...+.++       .. ..+...+.+.                          
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t-------~~-~~~~~~~~~~--------------------------   48 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPT-------IE-NTFTKLITVN--------------------------   48 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSS-------CC-EEEEEEEEET--------------------------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcc-------ee-cccceEEecC--------------------------
Confidence            3468999999999999999999988765432211       10 0011000000                          


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~  225 (324)
                                     +....+.+|||+|..++......        ....+|++++|.|....  +.....|...+  ..
T Consensus        49 ---------------~~~~~l~i~d~~g~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i--~~  103 (167)
T d1xtqa1          49 ---------------GQEYHLQLVDTAGQDEYSIFPQT--------YSIDINGYILVYSVTSIKSFEVIKVIHGKL--LD  103 (167)
T ss_dssp             ---------------TEEEEEEEEECCCCCTTCCCCGG--------GTSSCCEEEEEEETTCHHHHHHHHHHHHHH--HH
T ss_pred             ---------------cEEEEeeecccccccccccccch--------hhhhhhhhhhhcccchhhhhhhhhhhhhhh--hh
Confidence                           22457789999998876221110        01346888888887543  22222332211  12


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....++|+++|+||+|+.....+.  .++.+.+++                     ++  ++++++|||++|.||+++|
T Consensus       104 ~~~~~~~piilvgnK~Dl~~~r~v~--~~~~~~~a~---------------------~~--~~~~~e~Sak~~~~v~~~f  158 (167)
T d1xtqa1         104 MVGKVQIPIMLVGNKKDLHMERVIS--YEEGKALAE---------------------SW--NAAFLESSAKENQTAVDVF  158 (167)
T ss_dssp             HHCSSCCCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------HH--TCEEEECCTTCHHHHHHHH
T ss_pred             cccccccceeeeccccccccccchh--HHHHHHHHH---------------------Hc--CCEEEEEecCCCCCHHHHH
Confidence            3334678999999999986543210  111111111                     11  4688999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      ..|++.+.
T Consensus       159 ~~li~~~~  166 (167)
T d1xtqa1         159 RRIILEAE  166 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987664

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.9e-21  Score=154.86  Aligned_cols=163  Identities=17%  Similarity=0.174  Sum_probs=98.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+++|.+|||||||+++|++..+......+.       ........                       +...     
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~-------~~~~~~~~-----------------------~~~~-----   50 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI-------GVEFGSKI-----------------------INVG-----   50 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS-------EEEEEEEE-----------------------EEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccc-------ccceeeEE-----------------------EEec-----
Confidence            689999999999999999999887654322110       00000000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   .....+.+|||||++++..       +.+ ..-..++++++|+|........ .....+..+.....
T Consensus        51 -------------~~~~~~~i~D~~G~~~~~~-------~~~-~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~  108 (174)
T d2bmea1          51 -------------GKYVKLQIWDTAGQERFRS-------VTR-SYYRGAAGALLVYDITSRETYN-ALTNWLTDARMLAS  108 (174)
T ss_dssp             -------------TEEEEEEEEEECCSGGGHH-------HHH-TTSTTCSEEEEEEETTCHHHHH-THHHHHHHHHHHSC
T ss_pred             -------------CcceeEEEEECCCchhhhh-------hHH-HHhhhCCEEEEEEecccchhHH-HHhhhhcccccccC
Confidence                         1245788999999887621       111 1123468999999986532111 11111222233344


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      .++|+++|+||+|+........  .....+.+                       ...+++++|||++|.||+++|..|.
T Consensus       109 ~~~piivv~nK~D~~~~~~~~~--~~~~~~~~-----------------------~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1         109 QNIVIILCGNKKDLDADREVTF--LEASRFAQ-----------------------ENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             TTCEEEEEEECGGGGGGCCSCH--HHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CceEEEEEEecccccchhchhh--hHHHHHHH-----------------------hCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            6799999999999865432110  11111111                       1247899999999999999999999


Q ss_pred             HHHHH
Q 020549          310 ESAQE  314 (324)
Q Consensus       310 ~~~~~  314 (324)
                      +.+.+
T Consensus       164 ~~i~~  168 (174)
T d2bmea1         164 RKILN  168 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.9e-21  Score=155.50  Aligned_cols=164  Identities=14%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      -++|+|+|.+|||||||+++|++..+...+..++.     . ......                        ....    
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~-----~-~~~~~~------------------------~~~~----   51 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----V-EFLNKD------------------------LEVD----   51 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS-----E-EEEEEE------------------------EEET----
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCcccccee-----e-eeeeee------------------------eeec----
Confidence            46899999999999999999999876654322110     0 000000                        0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHH-
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACS-  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~-  225 (324)
                                    .....+.+|||+|+.+...        ........+++++++.|....  +.....|...+.... 
T Consensus        52 --------------~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~  109 (174)
T d1wmsa_          52 --------------GHFVTMQIWDTAGQERFRS--------LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD  109 (174)
T ss_dssp             --------------TEEEEEEEEECCCCGGGHH--------HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             --------------CceeeEeeecccCcceehh--------hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhc
Confidence                          1245678999999866411        111112446899999987642  233334433222111 


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|+++|+||+|+.+.....+   +.+.+.+                      -....++++|||++|.||+++|
T Consensus       110 ~~~~~~~piilVgnK~Dl~~~~v~~~---~~~~~~~----------------------~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_         110 VKEPESFPFVILGNKIDISERQVSTE---EAQAWCR----------------------DNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             CSCTTTSCEEEEEECTTCSSCSSCHH---HHHHHHH----------------------HTTCCCEEECCTTTCTTHHHHH
T ss_pred             cccCCCceEEEeccccchhhccCcHH---HHHHHHH----------------------HcCCCeEEEEcCCCCcCHHHHH
Confidence            11124689999999999865321111   1111111                      1234789999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      +.|++.+.
T Consensus       165 ~~l~~~il  172 (174)
T d1wmsa_         165 EEAVRRVL  172 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.7e-21  Score=157.93  Aligned_cols=163  Identities=13%  Similarity=0.173  Sum_probs=95.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|.+|||||||+++|++..+...+.++       ... .+...+.+.                           
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t-------~~~-~~~~~~~~~---------------------------   49 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPT-------IED-SYTKQCVID---------------------------   49 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTT-------CCE-EEEEEEEET---------------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcc-------ccc-ceeeeeeec---------------------------
Confidence            378999999999999999999988765432211       100 000000000                           


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||+|+.++....      ...+  ..+|++++|+|....  +.....|...+  ...
T Consensus        50 --------------~~~~~~~~~d~~g~~~~~~~~------~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~~--~~~  105 (171)
T d2erya1          50 --------------DRAARLDILDTAGQEEFGAMR------EQYM--RTGEGFLLVFSVTDRGSFEEIYKFQRQI--LRV  105 (171)
T ss_dssp             --------------TEEEEEEEEECC----CCHHH------HHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHH--HHH
T ss_pred             --------------ccccccccccccccccccccc------cccc--cccceEEEeeccccccchhhHHHHhHHH--Hhh
Confidence                          224578899999988863211      1111  125788888887542  22233332211  233


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+|+|+||+|+.......  .++...+.+                     .  .++++++|||++|.||+++|.
T Consensus       106 ~~~~~~p~ilvgnK~Dl~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~~~~i~e~f~  160 (171)
T d2erya1         106 KDRDEFPMILIGNKADLDHQRQVT--QEEGQQLAR---------------------Q--LKVTYMEASAKIRMNVDQAFH  160 (171)
T ss_dssp             HTSSCCSEEEEEECTTCTTSCSSC--HHHHHHHHH---------------------H--TTCEEEECBTTTTBSHHHHHH
T ss_pred             cccCCCCEEEEEeccchhhhccch--HHHHHHHHH---------------------H--cCCEEEEEcCCCCcCHHHHHH
Confidence            334678999999999987543211  111111111                     1  146899999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          307 AVEESAQEF  315 (324)
Q Consensus       307 ~i~~~~~~~  315 (324)
                      .|++.+...
T Consensus       161 ~l~~~i~k~  169 (171)
T d2erya1         161 ELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=7.5e-21  Score=157.06  Aligned_cols=164  Identities=18%  Similarity=0.206  Sum_probs=98.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+|+|.+|||||||+++|++..+...+.+++     .........                         ..      
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~-----~~~~~~~~~-------------------------~~------   46 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-----GADFLTKEV-------------------------MV------   46 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC-----SEEEEEEEE-------------------------ES------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcc-----ceeeeeeee-------------------------ee------
Confidence            589999999999999999999987664322111     000000000                         00      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHH-HHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYA-CSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~-~~~  226 (324)
                                  ......+.+|||||+.+........        ...++++++++|....  +.....|...+.. ...
T Consensus        47 ------------~~~~~~~~~~d~~g~~~~~~~~~~~--------~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  106 (184)
T d1vg8a_          47 ------------DDRLVTMQIWDTAGQERFQSLGVAF--------YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP  106 (184)
T ss_dssp             ------------SSCEEEEEEEEECSSGGGSCSCCGG--------GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             ------------CCceEEEEeeecCCccccccccccc--------ccCccEEEEeecccchhhhhcchhhHHHHHHHhcc
Confidence                        0224577899999987752211111        1346899999998642  2222334322211 001


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.+.....+....+.                         ......++++|||++|.||+++|+
T Consensus       107 ~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~-------------------------~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_         107 RDPENFPFVVLGNKIDLENRQVATKRAQAWC-------------------------YSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             SSGGGSCEEEEEECTTSSCCCSCHHHHHHHH-------------------------HHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             ccccCCCEEEEEEeecccccchhHHHHHHHH-------------------------HHhcCCeEEEEcCCCCcCHHHHHH
Confidence            1134689999999999876532222111111                         112357899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|++.+.+
T Consensus       162 ~l~~~i~~  169 (184)
T d1vg8a_         162 TIARNALK  169 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.9e-21  Score=156.29  Aligned_cols=161  Identities=12%  Similarity=0.155  Sum_probs=97.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||+++|+...+...+.+++       . ..+...+.                       ..    
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~-------~-~~~~~~~~-----------------------~~----   47 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------E-DSYRKQVE-----------------------VD----   47 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS-------E-EEEEEEEE-----------------------SS----
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc-------c-cccceeEE-----------------------ee----
Confidence            4689999999999999999999988765432211       0 00000000                       00    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+||++|+.++..  .    ...+++.  +|++++++|..+  ++.....|...+  .+.
T Consensus        48 --------------~~~~~~~~~d~~g~~~~~~--~----~~~~~~~--~~~~ilv~d~~~~~sf~~~~~~~~~~--~~~  103 (167)
T d1c1ya_          48 --------------CQQCMLEILDTAGTEQFTA--M----RDLYMKN--GQGFALVYSITAQSTFNDLQDLREQI--LRV  103 (167)
T ss_dssp             --------------SCEEEEEEEEECSSCSSTT--H----HHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHH--HHH
T ss_pred             --------------eeEEEeccccccCcccccc--c----ccccccc--cceeEEeeeccchhhhHhHHHHHHHH--HHh
Confidence                          2245688999999887622  1    1112222  467777777754  333333343222  122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+|+|+||+|+........  +....+.                      .-....++++|||++|.||+++|.
T Consensus       104 ~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~~~~~----------------------~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_         104 KDTEDVPMILVGNKCDLEDERVVGK--EQGQNLA----------------------RQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             HCCSCCCEEEEEECTTCGGGCCSCH--HHHHHHH----------------------HHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             cCCCCCeEEEEEEecCcccccccch--hHHHHHH----------------------HHhCCCEEEEEcCCCCcCHHHHHH
Confidence            2345789999999999976432100  1111111                      112357899999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|++.+
T Consensus       160 ~l~~~i  165 (167)
T d1c1ya_         160 DLVRQI  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.3e-21  Score=155.27  Aligned_cols=160  Identities=17%  Similarity=0.199  Sum_probs=96.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+++|++|||||||+++|++..+...+.++       +. ..+...                       +...     
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pT-------i~-~~~~~~-----------------------~~~~-----   46 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT-------LE-STYRHQ-----------------------ATID-----   46 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-------CC-EEEEEE-----------------------EEET-----
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCc-------ee-cccccc-----------------------cccc-----
Confidence            68999999999999999999998776543221       10 000000                       0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||+|+..+..       ....++.  ++.+++|.|....  +.....|....  ....
T Consensus        47 -------------~~~~~l~i~D~~g~~~~~~-------~~~~~~~--~~~~ilv~d~~~~~s~~~~~~~~~~~--~~~~  102 (168)
T d2atva1          47 -------------DEVVSMEILDTAGQEDTIQ-------REGHMRW--GEGFVLVYDITDRGSFEEVLPLKNIL--DEIK  102 (168)
T ss_dssp             -------------TEEEEEEEEECCCCCCCHH-------HHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHH--HHHH
T ss_pred             -------------ccceEEEEeeccccccccc-------chhhhcc--cccceeecccCCccchhhhhhhcccc--cccc
Confidence                         2245788999999876521       1112222  4677777776542  22222222111  1223


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC-ChHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAYFK  306 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~-gv~~l~~  306 (324)
                      ...+.|+++|+||+|+.....+.  .++...+++                     ++  ++++++|||++|. ||+++|.
T Consensus       103 ~~~~~piilvgnK~Dl~~~r~V~--~~e~~~~a~---------------------~~--~~~~~e~Saktg~gnV~e~F~  157 (168)
T d2atva1         103 KPKNVTLILVGNKADLDHSRQVS--TEEGEKLAT---------------------EL--ACAFYECSACTGEGNITEIFY  157 (168)
T ss_dssp             TTSCCCEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------HH--TSEEEECCTTTCTTCHHHHHH
T ss_pred             cccCcceeeeccchhhhhhccCc--HHHHHHHHH---------------------Hh--CCeEEEEccccCCcCHHHHHH
Confidence            34579999999999986542210  011111111                     11  4689999999998 5999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|++.+..
T Consensus       158 ~l~~~i~~  165 (168)
T d2atva1         158 ELCREVRR  165 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5.5e-21  Score=155.82  Aligned_cols=162  Identities=14%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||+++|++..+...+.++       ... .+...+...                           
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t-------~~~-~~~~~~~~~---------------------------   48 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPT-------IED-SYLKHTEID---------------------------   48 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTT-------CCE-EEEEEEEET---------------------------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcc-------eee-ccccccccc---------------------------
Confidence            478999999999999999999988765432211       100 000000000                           


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+||++|+.++..  ..    ...++.  +|++++|+|..+  ++.....|...+  .+.
T Consensus        49 --------------~~~~~~~i~d~~g~~~~~~--~~----~~~~~~--~~~~llv~d~~d~~Sf~~~~~~~~~i--~~~  104 (169)
T d1x1ra1          49 --------------NQWAILDVLDTAGQEEFSA--MR----EQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLI--LRV  104 (169)
T ss_dssp             --------------TEEEEEEEEECCSCGGGCS--SH----HHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHH--HHH
T ss_pred             --------------ccccccccccccccccccc--ch----hhhhhh--ccEEEEecccccchhhhccchhhHHH--Hhh
Confidence                          2245788999999887622  11    112222  478888887754  444444443322  123


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC-ChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~-gv~~l~  305 (324)
                      ....++|+|+|+||+|+.....+.  .++...+++                     .  .++++++|||++|. ||+++|
T Consensus       105 ~~~~~~p~ilvgnK~Dl~~~~~v~--~e~~~~~~~---------------------~--~~~~~~e~Sak~~~~nV~~~F  159 (169)
T d1x1ra1         105 KDRESFPMILVANKVDLMHLRKVT--RDQGKEMAT---------------------K--YNIPYIETSAKDPPLNVDKTF  159 (169)
T ss_dssp             HTSSCCCEEEEEECTTCSTTCCSC--HHHHHHHHH---------------------H--HTCCEEEEBCSSSCBSHHHHH
T ss_pred             ccccCccEEEEecccchhhhceee--hhhHHHHHH---------------------H--cCCEEEEEcCCCCCcCHHHHH
Confidence            334679999999999997653220  011121111                     1  14689999999986 999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      ..|++.+.+
T Consensus       160 ~~l~~~i~~  168 (169)
T d1x1ra1         160 HDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.9e-21  Score=154.83  Aligned_cols=161  Identities=14%  Similarity=0.143  Sum_probs=96.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+||+|+|.+|||||||+++|++..+...+.+++       ........                       +...    
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~-------~~~~~~~~-----------------------~~~~----   48 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL-------GASFLTKK-----------------------LNIG----   48 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC-------SCEEEEEE-----------------------EESS----
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-------ccchheee-----------------------eccC----
Confidence            3689999999999999999999987765332211       00000000                       0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||+|+.++......        .-..+|++++|.|....  +.....|   +.....
T Consensus        49 --------------~~~~~~~~~d~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~Sf~~~~~~---~~~~~~  103 (167)
T d1z08a1          49 --------------GKRVNLAIWDTAGQERFHALGPI--------YYRDSNGAILVYDITDEDSFQKVKNW---VKELRK  103 (167)
T ss_dssp             --------------SCEEEEEEEECCCC-------CC--------SSTTCSEEEEEEETTCHHHHHHHHHH---HHHHHH
T ss_pred             --------------CccceeeeeccCCcceecccchh--------hccCCceeEEEEeCCchhHHHhhhhh---hhhccc
Confidence                          22457889999998775210000        01236889999997643  2222233   222234


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+++|+||+|+.....+.  .++...+++                     .  .++++++|||++|.||+++|.
T Consensus       104 ~~~~~~~~ilvgnK~Dl~~~~~v~--~~e~~~~a~---------------------~--~~~~~~e~Sak~~~~v~e~F~  158 (167)
T d1z08a1         104 MLGNEICLCIVGNKIDLEKERHVS--IQEAESYAE---------------------S--VGAKHYHTSAKQNKGIEELFL  158 (167)
T ss_dssp             HHGGGSEEEEEEECGGGGGGCCSC--HHHHHHHHH---------------------H--TTCEEEEEBTTTTBSHHHHHH
T ss_pred             ccccccceeeeccccccccccccc--hHHHHHHHH---------------------H--cCCeEEEEecCCCcCHHHHHH
Confidence            445678999999999987643210  111111111                     1  246899999999999999999


Q ss_pred             HHHHHHH
Q 020549          307 AVEESAQ  313 (324)
Q Consensus       307 ~i~~~~~  313 (324)
                      .|++.+.
T Consensus       159 ~l~~~i~  165 (167)
T d1z08a1         159 DLCKRMI  165 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.83  E-value=5.9e-21  Score=157.37  Aligned_cols=165  Identities=21%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      .++..+|+++|++|||||||+++|.+..+...    .    ++......                           ... 
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~----~----~t~~~~~~---------------------------~~~-   57 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT----K----PTIGFNVE---------------------------TLS-   57 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE----C----SSTTCCEE---------------------------EEE-
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc----c----cccceEEE---------------------------EEe-
Confidence            34678999999999999999999977654321    0    11000000                           000 


Q ss_pred             cccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHH
Q 020549          146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS  225 (324)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~  225 (324)
                                       ..+..+.+|||||+..+.......        -..++++++++|..+..........+...+.
T Consensus        58 -----------------~~~~~~~i~D~~g~~~~~~~~~~~--------~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~  112 (182)
T d1moza_          58 -----------------YKNLKLNVWDLGGQTSIRPYWRCY--------YADTAAVIFVVDSTDKDRMSTASKELHLMLQ  112 (182)
T ss_dssp             -----------------ETTEEEEEEEEC----CCTTGGGT--------TTTEEEEEEEEETTCTTTHHHHHHHHHHHTT
T ss_pred             -----------------eCCEEEEEEecccccccchhHHhh--------hccceeEEEEeeecccccchhHHHHHHHHHH
Confidence                             235678999999987752111110        1235899999998765443321111111111


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~  303 (324)
                      .....+.|+++|+||+|+.+.....+..+.+.                     .   ..  ....++++|||++|+||++
T Consensus       113 ~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~e~SA~~g~gv~e  168 (182)
T d1moza_         113 EEELQDAALLVFANKQDQPGALSASEVSKELN---------------------L---VELKDRSWSIVASSAIKGEGITE  168 (182)
T ss_dssp             SSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT---------------------T---TTCCSSCEEEEEEBGGGTBTHHH
T ss_pred             hhccCCcceEEEEEeeccccccCHHHHHHHHH---------------------H---HHHhhCCCEEEEEECCCCCCHHH
Confidence            12235689999999999975422222221110                     0   00  1235789999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          304 YFKAVEESAQEF  315 (324)
Q Consensus       304 l~~~i~~~~~~~  315 (324)
                      +|+.|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T d1moza_         169 GLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.4e-20  Score=156.81  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=99.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      -++|+|+|.+|||||||+++|++..+...+.++       ........                       .+...    
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t-------~~~~~~~~-----------------------~i~~~----   51 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYIST-------IGVDFKIK-----------------------TVELD----   51 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCS-------SCCCEEEE-----------------------EEEET----
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCc-------cceeEEEE-----------------------EEEEe----
Confidence            378999999999999999999987765432211       00000000                       00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    .....+.||||||++++..-...      .+  ..++++++|+|......... .......+....
T Consensus        52 --------------~~~~~l~i~Dt~G~e~~~~~~~~------~~--~~a~~~i~v~d~t~~~s~~~-~~~~~~~~~~~~  108 (194)
T d2bcgy1          52 --------------GKTVKLQIWDTAGQERFRTITSS------YY--RGSHGIIIVYDVTDQESFNG-VKMWLQEIDRYA  108 (194)
T ss_dssp             --------------TEEEEEEEECCTTTTTTTCCCGG------GG--TTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHS
T ss_pred             --------------eEEEEEEEEECCCchhhHHHHHH------Hh--ccCCEEEEEEeCcchhhhhh-Hhhhhhhhhhcc
Confidence                          22467889999999886221111      11  34689999999864322111 111122223344


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+........  +....+.                       .....+++++||++|.||+++|..|
T Consensus       109 ~~~~~iilv~nK~D~~~~~~~~~--~~~~~~~-----------------------~~~~~~~~e~SAk~g~gi~e~f~~l  163 (194)
T d2bcgy1         109 TSTVLKLLVGNKCDLKDKRVVEY--DVAKEFA-----------------------DANKMPFLETSALDSTNVEDAFLTM  163 (194)
T ss_dssp             CTTCEEEEEEECTTCTTTCCSCH--HHHHHHH-----------------------HHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCceEEEEEeccccccccchhH--HHHhhhh-----------------------hccCcceEEEecCcCccHHHHHHHH
Confidence            56789999999999986532211  1111110                       1235789999999999999999999


Q ss_pred             HHHHHH
Q 020549          309 EESAQE  314 (324)
Q Consensus       309 ~~~~~~  314 (324)
                      .+.+.+
T Consensus       164 ~~~i~~  169 (194)
T d2bcgy1         164 ARQIKE  169 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.82  E-value=9.3e-21  Score=154.94  Aligned_cols=161  Identities=17%  Similarity=0.136  Sum_probs=95.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+++|++|||||||+++|++..+....    .+..  ..   ..                         ...   
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~----~t~~--~~---~~-------------------------~~~---   52 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI----PTVG--FN---VE-------------------------TVT---   52 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE----EETT--EE---EE-------------------------EEE---
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc----ceee--ee---EE-------------------------Eee---
Confidence            45688999999999999999999876543211    0000  00   00                         000   


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.+||+||+..+..  .    ...  ....++.+++|+|.............+...+..
T Consensus        53 ----------------~~~~~~~i~D~~g~~~~~~--~----~~~--~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~  108 (173)
T d1e0sa_          53 ----------------YKNVKFNVWDVGGQDKIRP--L----WRH--YYTGTQGLIFVVDCADRDRIDEARQELHRIIND  108 (173)
T ss_dssp             ----------------ETTEEEEEEEESCCGGGHH--H----HGG--GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred             ----------------ccceeeEEecCCCcchhhh--H----HHh--hhcccceEEEEEecccchhHHHHHHHHHHHhhh
Confidence                            2256788999999877521  0    000  113468999999986532221111111111111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh--ccCceeeeccccCCChHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY--KNLKSVGVSSVSGAGIEAY  304 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~iv~vSA~~g~gv~~l  304 (324)
                      ....+.|+++|+||+|+.+.....+....+.                     .   ...  ....+++|||++|+||+++
T Consensus       109 ~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_         109 REMRDAIILIFANKQDLPDAMKPHEIQEKLG---------------------L---TRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             GGGTTCEEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             cccccceeeeeeecccccccccHHHHHHHHH---------------------H---HHHHhCCCEEEEeeCCCCcCHHHH
Confidence            2245799999999999976432222221110                     0   011  1356899999999999999


Q ss_pred             HHHHHHHH
Q 020549          305 FKAVEESA  312 (324)
Q Consensus       305 ~~~i~~~~  312 (324)
                      |++|.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.82  E-value=1.2e-20  Score=152.90  Aligned_cols=156  Identities=16%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|++|||||||+++|.+..+.....++       .       .++...                   + .     
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T-------~-------~~~~~~-------------------~-~-----   43 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT-------V-------GFNMRK-------------------I-T-----   43 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC-------C-------SEEEEE-------------------E-E-----
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCccccc-------c-------eeeeee-------------------e-e-----
Confidence            57999999999999999999988765432111       0       000000                   0 0     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~~  227 (324)
                                   ..+..+.+||+||+..+..  ..    ...+  ..++.+++++|......  ....|.  ...+...
T Consensus        44 -------------~~~~~~~i~D~~G~~~~~~--~~----~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~  100 (164)
T d1zd9a1          44 -------------KGNVTIKLWDIGGQPRFRS--MW----ERYC--RGVSAIVYMVDAADQEKIEASKNEL--HNLLDKP  100 (164)
T ss_dssp             -------------ETTEEEEEEEECCSHHHHT--TH----HHHH--TTCSEEEEEEETTCGGGHHHHHHHH--HHHHTCG
T ss_pred             -------------eeeEEEEEeeccccccccc--cc----cccc--cccchhhcccccccccccchhhhhh--hhhhhhh
Confidence                         2356788999999876521  11    1112  34689999999864321  111111  1111122


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH--hccCceeeeccccCCChHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF--YKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ...++|+++|+||+|+.......+..+.+.                     .   ..  ....+++++||++|.||+++|
T Consensus       101 ~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~---------------------~---~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1         101 QLQGIPVLVLGNKRDLPGALDEKELIEKMN---------------------L---SAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             GGTTCCEEEEEECTTSTTCCCHHHHHHHTT---------------------G---GGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cccCCcEEEEEeccccchhhhHHHHHHHHH---------------------H---HHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            335799999999999976432222221111                     0   01  124578999999999999999


Q ss_pred             HHHHHH
Q 020549          306 KAVEES  311 (324)
Q Consensus       306 ~~i~~~  311 (324)
                      +.|.+.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.7e-21  Score=156.56  Aligned_cols=160  Identities=16%  Similarity=0.170  Sum_probs=96.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|++|||||||+++|++..+...+...       .........+                       ...     
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~-------~~~~~~~~~~-----------------------~~~-----   49 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKST-------IGVEFATRSI-----------------------QVD-----   49 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CC-------CSCEEEEEEE-----------------------EET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccccc-------ccceeeeEEE-----------------------EEC-----
Confidence            68999999999999999999998765432210       0000000000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.||||||++++..  ....    .+  ..+|++++|+|....  +.....|   +..+...
T Consensus        50 -------------~~~~~~~i~d~~g~e~~~~--~~~~----~~--~~~~~~i~v~d~~~~~S~~~~~~~---~~~i~~~  105 (175)
T d2f9la1          50 -------------GKTIKAQIWDTAGQERYRR--ITSA----YY--RGAVGALLVYDIAKHLTYENVERW---LKELRDH  105 (175)
T ss_dssp             -------------TEEEEEEEEECSSGGGTTC--CCHH----HH--TTCSEEEEEEETTCHHHHHTHHHH---HHHHHHH
T ss_pred             -------------CEEEEEEecccCCcHHHHH--HHHH----Hh--hccCeEEEEEECCCcccchhHHHH---HHHHHHh
Confidence                         1245788999999887622  1111    11  335788888887643  2222222   2222334


Q ss_pred             hhcCCCeEEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ...++|+++|+||+|+.+..... +.....                          ......++++|||++|.||+++|.
T Consensus       106 ~~~~~piilvgnK~Dl~~~~~~~~~~~~~~--------------------------~~~~~~~~~e~Sa~~g~~i~e~f~  159 (175)
T d2f9la1         106 ADSNIVIMLVGNKSDLRHLRAVPTDEARAF--------------------------AEKNNLSFIETSALDSTNVEEAFK  159 (175)
T ss_dssp             SCTTCEEEEEEECTTCGGGCCSCHHHHHHH--------------------------HHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             cCCCCcEEEEEeeecccccccchHHHHHHh--------------------------hcccCceEEEEecCCCcCHHHHHH
Confidence            44678999999999987542211 111111                          011357899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|.+.+..
T Consensus       160 ~l~~~i~~  167 (175)
T d2f9la1         160 NILTEIYR  167 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=153.62  Aligned_cols=164  Identities=19%  Similarity=0.135  Sum_probs=94.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+||+++|++|||||||+++|++..+........      .....+...+                       ...    
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------------------~~~----   52 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIST------VGIDFRNKVL-----------------------DVD----   52 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCC------CSCEEEEEEE-----------------------EET----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccce------eeeeeEEEEE-----------------------Eec----
Confidence            4789999999999999999999887653221100      0000000000                       000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                    +....+.||||||++++..       +... .-..+|++++|+|........ .............
T Consensus        53 --------------~~~~~l~i~Dt~G~e~~~~-------~~~~-~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~  109 (170)
T d2g6ba1          53 --------------GVKVKLQMWDTAGQERFRS-------VTHA-YYRDAHALLLLYDVTNKASFD-NIQAWLTEIHEYA  109 (170)
T ss_dssp             --------------TEEEEEEEEECCCC---------------C-CGGGCSEEEEEEETTCHHHHH-THHHHHHHHHHHS
T ss_pred             --------------CcEEEEEEEECCCchhhHH-------HHHH-hhcCCceeEEEecCCcccchh-hhhhhhhhhhhcc
Confidence                          2245788999999877511       1010 012368999999876432111 1111122222334


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ....|+++|+||+|+.......  .+....+.+                     .  .++++++|||++|.||+++|..|
T Consensus       110 ~~~~~iilv~~k~d~~~~~~v~--~~~~~~~~~---------------------~--~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1         110 QHDVALMLLGNKVDSAHERVVK--REDGEKLAK---------------------E--YGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             CTTCEEEEEEECCSTTSCCCSC--HHHHHHHHH---------------------H--HTCCEEECCTTTCTTHHHHHHHH
T ss_pred             CCCceEEEEEeeechhhccccc--HHHHHHHHH---------------------H--cCCEEEEEeCCCCcCHHHHHHHH
Confidence            4678999999999987653221  011111111                     1  14789999999999999999999


Q ss_pred             HHHHH
Q 020549          309 EESAQ  313 (324)
Q Consensus       309 ~~~~~  313 (324)
                      ++.+.
T Consensus       165 ~~~i~  169 (170)
T d2g6ba1         165 AKELK  169 (170)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=154.50  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=96.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+|+|++|||||||+++|++..+...+....       ....+..                       .....     
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~-------~~~~~~~-----------------------~~~~~-----   48 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-------GVEFGAR-----------------------MVNID-----   48 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----C-------CSSEEEE-----------------------EEEET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccce-------eecccee-----------------------eeeee-----
Confidence            689999999999999999999987765432211       0000000                       00000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+||++|+..+..  ....    .+  ..+|++++++|..+  ++.....|   +..+...
T Consensus        49 -------------~~~~~~~i~d~~g~~~~~~--~~~~----~~--~~~d~~ilv~d~~~~~sf~~~~~~---~~~~~~~  104 (173)
T d2a5ja1          49 -------------GKQIKLQIWDTAGQESFRS--ITRS----YY--RGAAGALLVYDITRRETFNHLTSW---LEDARQH  104 (173)
T ss_dssp             -------------TEEEEEEEECCTTGGGTSC--CCHH----HH--TTCSEEEEEEETTCHHHHHTHHHH---HHHHHHH
T ss_pred             -------------eeEEEEEeecccCccchhh--HHHH----Hh--hccCEEEEEEeecChHHHHhHHHH---HHHHHHh
Confidence                         1245788999999877521  1111    11  33578888888644  22222223   2222334


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...++|++||+||+|+.......  .+....+++                     .  ...++++|||++|.||+++|..
T Consensus       105 ~~~~~piilv~nK~D~~~~~~~~--~~~~~~~a~---------------------~--~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1         105 SSSNMVIMLIGNKSDLESRRDVK--REEGEAFAR---------------------E--HGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             SCTTCEEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEEECTTTCTTHHHHHHH
T ss_pred             CCCCCeEEEEecCCchhhhhhhH--HHHHHHHHH---------------------H--cCCEEEEecCCCCCCHHHHHHH
Confidence            45679999999999976532210  111111111                     1  2468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |++.+..
T Consensus       160 i~~~i~~  166 (173)
T d2a5ja1         160 TAKEIYR  166 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.6e-20  Score=149.65  Aligned_cols=162  Identities=16%  Similarity=0.160  Sum_probs=98.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +||+++|.+|||||||+++|++..+...+.+++.     ......+                         +...     
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~-----~~~~~~~-------------------------i~~~-----   47 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG-----IDFKIKT-------------------------VDIN-----   47 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC------------CCEEEEE-------------------------EESS-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccc-----eeEEEEE-------------------------EEEC-----
Confidence            6899999999999999999999877654332220     0000000                         0000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   +....+.||||||++++..  ....    .+  ..+|++++|+|..+.... ...............
T Consensus        48 -------------~~~~~~~i~Dt~G~~~~~~--~~~~----~~--~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~  105 (166)
T d1g16a_          48 -------------GKKVKLQIWDTAGQERFRT--ITTA----YY--RGAMGIILVYDITDERTF-TNIKQWFKTVNEHAN  105 (166)
T ss_dssp             -------------SCEEEEEEECCTTGGGTSC--CCHH----HH--TTEEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC
T ss_pred             -------------CEEEEEEEEECCCchhhHH--HHHH----HH--hcCCEEEEEEECCCccCH-HHHHhhhhhhhcccc
Confidence                         2245678999999887621  1111    11  335899999998763211 111111222233445


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...|++++.||.|+.......+....+.   +                     .  .+.++++|||++|.||+++|+.|.
T Consensus       106 ~~~~~i~~~~k~d~~~~~~~~~~~~~~~---~---------------------~--~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_         106 DEAQLLLVGNKSDMETRVVTADQGEALA---K---------------------E--LGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             TTCEEEEEEECTTCTTCCSCHHHHHHHH---H---------------------H--HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CcceeeeecchhhhhhhhhhHHHHHHHH---H---------------------h--cCCeEEEECCCCCCCHHHHHHHHH
Confidence            6788999999999876543222222211   1                     1  247999999999999999999999


Q ss_pred             HHHHH
Q 020549          310 ESAQE  314 (324)
Q Consensus       310 ~~~~~  314 (324)
                      +.+.+
T Consensus       160 ~~i~~  164 (166)
T d1g16a_         160 KLIQE  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.6e-21  Score=155.81  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=96.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ++|+++|.+|||||||+++|++..+.....++.       ........+                       ...     
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~-------~~~~~~~~~-----------------------~~~-----   51 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI-------GAAFLTQTV-----------------------CLD-----   51 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS-------SEEEEEEEE-----------------------EET-----
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccc-------cccccccee-----------------------ecc-----
Confidence            689999999999999999999887765332110       000000000                       000     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--CchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.+|||||++++..  .    ....+  ..+|++++++|.....  .....|   ...+...
T Consensus        52 -------------~~~~~~~~~d~~g~~~~~~--~----~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~---~~~~~~~  107 (170)
T d1r2qa_          52 -------------DTTVKFEIWDTAGQERYHS--L----APMYY--RGAQAAIVVYDITNEESFARAKNW---VKELQRQ  107 (170)
T ss_dssp             -------------TEEEEEEEEEECCSGGGGG--G----HHHHH--TTCSEEEEEEETTCHHHHHHHHHH---HHHHHHH
T ss_pred             -------------ceEEEEEeccCCCchhhhh--h----HHHHh--hCcceEEEEeccchhhHHHHHHHH---hhhhhhc
Confidence                         1245788999999887621  1    11122  2357888888875432  112222   2222233


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      ...+.|+++|+||+|+.......  .+....+.+                       ...+++++|||++|.||+++|..
T Consensus       108 ~~~~~~iilvgnK~Dl~~~~~v~--~e~~~~~~~-----------------------~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_         108 ASPNIVIALSGNKADLANKRAVD--FQEAQSYAD-----------------------DNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             SCTTCEEEEEEECGGGGGGCCSC--HHHHHHHHH-----------------------HTTCEEEECCTTTCTTHHHHHHH
T ss_pred             cCCCceEEeeccccccccccccc--HHHHHHHHH-----------------------hcCCEEEEeeCCCCCCHHHHHHH
Confidence            34578999999999986543210  011111111                       12468999999999999999999


Q ss_pred             HHHHHH
Q 020549          308 VEESAQ  313 (324)
Q Consensus       308 i~~~~~  313 (324)
                      |++.++
T Consensus       163 l~~~i~  168 (170)
T d1r2qa_         163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            987653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.7e-20  Score=153.98  Aligned_cols=168  Identities=18%  Similarity=0.218  Sum_probs=100.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .+||+++|.+|||||||+++|++..+........        ......    .                  .+...    
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~--------~~~~~~----~------------------~~~~~----   52 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATI--------GVDFKV----K------------------TISVD----   52 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC--------SEEEEE----E------------------EEEET----
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccce--------eeccee----E------------------EEEEe----
Confidence            4789999999999999999999887654321100        000000    0                  00000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH-H
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI-L  227 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~-~  227 (324)
                                    .....+.||||||++++..   ...   ..+  ..+|++++|+|....... ......+..+.. .
T Consensus        53 --------------~~~~~~~i~Dt~G~~~~~~---~~~---~~~--~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~  109 (177)
T d1x3sa1          53 --------------GNKAKLAIWDTAGQERFRT---LTP---SYY--RGAQGVILVYDVTRRDTF-VKLDNWLNELETYC  109 (177)
T ss_dssp             --------------TEEEEEEEEEECSSGGGCC---SHH---HHH--TTCCEEEEEEETTCHHHH-HTHHHHHHHHTTCC
T ss_pred             --------------ccccEEEEEECCCchhhHH---HHH---HHH--hcCCEEEEEEECCCcccc-ccchhhhhhhcccc
Confidence                          1245788999999877521   111   111  345899999997542111 111111111111 1


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      .....|++++.||.|.............+   .+                       ....+++++||++|.||+++|+.
T Consensus       110 ~~~~~~i~~~~nk~d~~~~~v~~~~~~~~---~~-----------------------~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1         110 TRNDIVNMLVGNKIDKENREVDRNEGLKF---AR-----------------------KHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             SCSCCEEEEEEECTTSSSCCSCHHHHHHH---HH-----------------------HTTCEEEECCTTTCTTHHHHHHH
T ss_pred             cccceeeEEEeeccccccccccHHHHHHH---HH-----------------------HCCCEEEEEeCCCCCCHHHHHHH
Confidence            13458889999999987643221111111   11                       12468999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 020549          308 VEESAQEFMETY  319 (324)
Q Consensus       308 i~~~~~~~~~~~  319 (324)
                      |++.+.+.+..+
T Consensus       164 l~~~l~~~p~l~  175 (177)
T d1x3sa1         164 LVEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHHTSGGGT
T ss_pred             HHHHHccCcccc
Confidence            999888766554

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.81  E-value=1.9e-19  Score=144.30  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|++|||||||+++|++..+.....        ........                           ..     
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~--------~~~~~~~~---------------------------~~-----   40 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP--------TIGFNVET---------------------------VE-----   40 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC--------CSSCCEEE---------------------------EE-----
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc--------ceeeEEEE---------------------------Ee-----
Confidence            379999999999999999999887653210        00000000                           00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   .....+.+||+||+.....      .....  ...++.+++++|.......................
T Consensus        41 -------------~~~~~~~~~d~~g~~~~~~------~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   99 (160)
T d1r8sa_          41 -------------YKNISFTVWDVGGQDKIRP------LWRHY--FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL   99 (160)
T ss_dssp             -------------CSSCEEEEEECCCCGGGHH------HHHHH--TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             -------------eeeEEEEEecCCCcccchh------hhhhh--hccceeEEEEEEecChHHHHHHHHHHHHHHHhhcc
Confidence                         2367889999999866411      11111  23467888888876533222111111111112223


Q ss_pred             cCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          230 TRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                      ...|+++|+||+|+.+.....+......   ..          +         ......++++|||++|+||+++|+.|.
T Consensus       100 ~~~~i~~v~~k~d~~~~~~~~~i~~~~~---~~----------~---------~~~~~~~~~~~SAktg~gi~e~~~~l~  157 (160)
T d1r8sa_         100 RDAVLLVFANKQDLPNAMNAAEITDKLG---LH----------S---------LRHRNWYIQATCATSGDGLYEGLDWLS  157 (160)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHTT---GG----------G---------CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             cCceEEEEeecccccccccHHHHHHHHH---HH----------H---------HhhCCCEEEEeECCCCCCHHHHHHHHH
Confidence            5689999999999886543222211110   00          0         001246899999999999999999998


Q ss_pred             HH
Q 020549          310 ES  311 (324)
Q Consensus       310 ~~  311 (324)
                      +.
T Consensus       158 ~~  159 (160)
T d1r8sa_         158 NQ  159 (160)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=5.9e-20  Score=154.09  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             hCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecc
Q 020549          163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKT  241 (324)
Q Consensus       163 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~  241 (324)
                      ..+.++.|+||||+.+|..      .+.+.+  ..+|++|+|||+.+|+..++     ...+..+...++| +|+++||+
T Consensus        64 ~~~~~i~iiDtPGh~df~~------~~~~~~--~~aD~avlVvda~~Gv~~qt-----~~~~~~~~~~gi~~iiv~iNK~  130 (204)
T d2c78a3          64 TAKRHYSHVDCPGHADYIK------NMITGA--AQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFMNKV  130 (204)
T ss_dssp             CSSCEEEEEECCCSGGGHH------HHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECG
T ss_pred             eCCeEEEEEeCCCchhhHH------HHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCeEEEEEEec
Confidence            4478899999999888622      222222  45799999999999999876     3334556667887 56789999


Q ss_pred             ccCChH
Q 020549          242 DVAQHE  247 (324)
Q Consensus       242 Dl~~~~  247 (324)
                      |+++..
T Consensus       131 D~~~~~  136 (204)
T d2c78a3         131 DMVDDP  136 (204)
T ss_dssp             GGCCCH
T ss_pred             ccCCCH
Confidence            998744

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.5e-20  Score=153.81  Aligned_cols=166  Identities=16%  Similarity=0.145  Sum_probs=75.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||+++|++..+.....+++       . ..+..    ..                  +..     
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~-------~-~~~~~----~~------------------~~~-----   50 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI-------G-IDFKI----RT------------------IEL-----   50 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHH-------C-EEEEE----EE------------------EEE-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccc-------c-ceEEE----EE------------------EEE-----
Confidence            4689999999999999999999876653221100       0 00000    00                  000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHh
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY  228 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~  228 (324)
                                   ......+.||||||++++.......        -..+|++++|+|.+....- .........+....
T Consensus        51 -------------~~~~~~l~i~D~~G~e~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~  108 (173)
T d2fu5c1          51 -------------DGKRIKLQIWDTAGQERFRTITTAY--------YRGAMGIMLVYDITNEKSF-DNIRNWIRNIEEHA  108 (173)
T ss_dssp             -------------TTEEEEEEEEEC---------CCTT--------TTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS
T ss_pred             -------------CCEEEEEEEEECCCchhhHHHHHHh--------ccCCCEEEEEEECCChhhH-HHHHHHHHHhhhhc
Confidence                         0124567899999987762111110        1346899999998653211 11212222223344


Q ss_pred             hcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHH
Q 020549          229 KTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       229 ~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ..+.|+++|+||+|+........  ++...+.                      . ..++++++|||++|.||+++|..|
T Consensus       109 ~~~~~iilv~~k~D~~~~~~~~~--~~~~~~~----------------------~-~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1         109 SADVEKMILGNKCDVNDKRQVSK--ERGEKLA----------------------L-DYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             CTTCEEEEEEEC--CCSCCCSCH--HHHHHHH----------------------H-HHTCEEEECCC---CCHHHHHHHH
T ss_pred             cCCceEEEEEecccchhhcccHH--HHHHHHH----------------------H-hcCCEEEEEeCCCCCCHHHHHHHH
Confidence            56799999999999886432110  0111000                      0 125789999999999999999999


Q ss_pred             HHHHHHHH
Q 020549          309 EESAQEFM  316 (324)
Q Consensus       309 ~~~~~~~~  316 (324)
                      ++.+.+..
T Consensus       164 ~~~i~~k~  171 (173)
T d2fu5c1         164 ARDIKAKM  171 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99886543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-20  Score=157.26  Aligned_cols=173  Identities=16%  Similarity=0.150  Sum_probs=99.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||+++|++..+...+.+++       ... .....                       ..     
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~-------~~~-~~~~~-----------------------~~-----   46 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-------FDN-YAVTV-----------------------MI-----   46 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-------EEE-EEEEE-----------------------EE-----
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCce-------eee-cceeE-----------------------ee-----
Confidence            3689999999999999999999988765432221       000 00000                       00     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchh-HHHhHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMT-FMSNMLYACS  225 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~-~~~~~~~~~~  225 (324)
                                   .+....+.||||+|++++.......        -..+|++++|+|..+.  +.... +|...+    
T Consensus        47 -------------~~~~~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~----  101 (191)
T d2ngra_          47 -------------GGEPYTLGLFDTAGQEDYDRLRPLS--------YPQTDVFLVCFSVVSPSSFENVKEKWVPEI----  101 (191)
T ss_dssp             -------------TTEEEEEEEEEECCSGGGTTTGGGG--------CTTCSEEEEEEETTCHHHHHHHHHTHHHHH----
T ss_pred             -------------CCceeeeeccccccchhhhhhhhhc--------ccccceeecccccchHHHHHHHHHHHHHHH----
Confidence                         0224578899999998862211110        1246788888886543  22222 332222    


Q ss_pred             HHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          226 ILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      .....+.|+++|+||+|+.......+......    ...-.......++.        -....++++|||++|.||+++|
T Consensus       102 ~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~----~~~v~~~~~~~~~~--------~~~~~~~~e~SAk~~~~V~e~f  169 (191)
T d2ngra_         102 THHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK----QKPITPETAEKLAR--------DLKAVKYVECSALTQKGLKNVF  169 (191)
T ss_dssp             HHHCTTCCEEEEEECGGGGGCHHHHHHHHTTT----CCCCCHHHHHHHHH--------HTTCSCEEECCTTTCTTHHHHH
T ss_pred             hhcCCCCceEEEeccccccccchhhhhhhhcc----cccccHHHHHHHHH--------HcCCCeEEEEeCCCCcCHHHHH
Confidence            12335799999999999976543211110000    00000000111111        1235789999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          306 KAVEESAQE  314 (324)
Q Consensus       306 ~~i~~~~~~  314 (324)
                      +.|.+.+.+
T Consensus       170 ~~l~~~~~~  178 (191)
T d2ngra_         170 DEAILAALE  178 (191)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHhc
Confidence            999887643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.9e-20  Score=153.46  Aligned_cols=171  Identities=22%  Similarity=0.273  Sum_probs=103.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+|+|.+|||||||+|+|++.....            +...+.++...++                  +...      
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~------------~~~~~~t~~~~~~------------------~~~~------   49 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISI------------TSRKAQTTRHRIV------------------GIHT------   49 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEE------------CCCCSSCCSSCEE------------------EEEE------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcee------------eccCCCceEEEEE------------------eeee------
Confidence            459999999999999999999865431            1111212111000                  1111      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc--cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                   .....+.++|++|....... ............  ..++++++++|+.........+      ...+
T Consensus        50 -------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~~~l  109 (179)
T d1egaa1          50 -------------EGAYQAIYVDTPGLHMEEKR-AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMV------LNKL  109 (179)
T ss_dssp             -------------ETTEEEEEESSSSCCHHHHH-HHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHH------HHHH
T ss_pred             -------------cCCceeEeecCCCceecchh-hhhhhhhhccccchhhcceeEEEEecCccchhHHHH------HHHh
Confidence                         12456778999997654111 011111111111  2357888888876543222211      1344


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      .....|.++|+||+|.......  .......+.                      ......+++++||++|.|+++|++.
T Consensus       110 ~~~~~~~i~v~~k~d~~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~vSA~~g~gi~~L~~~  165 (179)
T d1egaa1         110 REGKAPVILAVNKVDNVQEKAD--LLPHLQFLA----------------------SQMNFLDIVPISAETGLNVDTIAAI  165 (179)
T ss_dssp             HSSSSCEEEEEESTTTCCCHHH--HHHHHHHHH----------------------TTSCCSEEEECCTTTTTTHHHHHHH
T ss_pred             hhccCceeeeeeeeeccchhhh--hhhHhhhhh----------------------hhcCCCCEEEEeCcCCCCHHHHHHH
Confidence            5677899999999998876421  111111111                      2235678999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 020549          308 VEESAQEFMETYK  320 (324)
Q Consensus       308 i~~~~~~~~~~~~  320 (324)
                      |.+++++.++.|+
T Consensus       166 i~~~lpe~~~~yp  178 (179)
T d1egaa1         166 VRKHLPEATHHFP  178 (179)
T ss_dssp             HHTTCCBCCCSSC
T ss_pred             HHHhCCCCCCCCC
Confidence            9999998888775

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.6e-20  Score=151.15  Aligned_cols=174  Identities=17%  Similarity=0.143  Sum_probs=97.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+|+|++|||||||+++|++..+......+.... .......+    +.....              .....     
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~-~~~~~i~~----~~~~~~--------------~~~~~-----   60 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGID-FREKRVVY----NAQGPN--------------GSSGK-----   60 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEE-EEEEEEEE----EC---------------------CC-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccce-eeEEEEEE----eccccc--------------ccccc-----
Confidence            3689999999999999999999887765443322100 00000000    000000              00000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC--chhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN--PMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~--~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||||++++..      .....+  ..+|.+++|+|......  ....|...+  ...
T Consensus        61 --------------~~~~~~~i~dt~G~e~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~  116 (186)
T d2f7sa1          61 --------------AFKVHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLMFDLTSQQSFLNVRNWMSQL--QAN  116 (186)
T ss_dssp             --------------EEEEEEEEEEEESHHHHHH------HHHHHH--TTCCEEEEEEETTCHHHHHHHHHHHHTC--CCC
T ss_pred             --------------cceEEeccccCCcchhhHH------HHHHHH--hcCCEEEEEEeccccccceeeeeccchh--hhh
Confidence                          1135688999999877621      111112  34689999999754211  111111100  001


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+++|+||+|+.....+..  ++...+++                     .  .++++++|||++|.||+++|+
T Consensus       117 ~~~~~~~iilv~nK~Dl~~~~~v~~--~e~~~~~~---------------------~--~~~~~~e~Sak~~~~i~e~f~  171 (186)
T d2f7sa1         117 AYCENPDIVLIGNKADLPDQREVNE--RQARELAD---------------------K--YGIPYFETSAATGQNVEKAVE  171 (186)
T ss_dssp             CTTTCCEEEEEEECTTCGGGCCSCH--HHHHHHHH---------------------H--TTCCEEEEBTTTTBTHHHHHH
T ss_pred             ccCCCceEEEEeeeccchhhhcchH--HHHHHHHH---------------------H--cCCEEEEEeCCCCCCHHHHHH
Confidence            1124568899999999965432100  11111111                     1  146899999999999999999


Q ss_pred             HHHHHHHHH
Q 020549          307 AVEESAQEF  315 (324)
Q Consensus       307 ~i~~~~~~~  315 (324)
                      .|.+.+...
T Consensus       172 ~l~~~i~~k  180 (186)
T d2f7sa1         172 TLLDLIMKR  180 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-20  Score=153.65  Aligned_cols=165  Identities=12%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      -+||+++|.+|||||||+++|++..+.........+    ...+...                         +...    
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~----~~~~~~~-------------------------~~~~----   49 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG----EDTYERT-------------------------LMVD----   49 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CC----TTEEEEE-------------------------EEET----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCcccccccee----eecceee-------------------------eccC----
Confidence            478999999999999999999987554321111000    0000000                         0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+||++|....      ...+... .-..+|++++|.|....  +.....|...+.  ..
T Consensus        50 --------------~~~~~~~~~d~~~~~g~------e~~~~~~-~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~--~~  106 (172)
T d2g3ya1          50 --------------GESATIILLDMWENKGE------NEWLHDH-CMQVGDAYLIVYSITDRASFEKASELRIQLR--RA  106 (172)
T ss_dssp             --------------TEEEEEEEECCTTTTHH------HHHHHHC-CCCCCSEEEEEEETTCHHHHHHHHHHHHHHH--TS
T ss_pred             --------------Cceeeeeeecccccccc------ccccccc-cccccceeeeeecccccchhhhhhhhhhhhh--hc
Confidence                          12456778887753211      0011111 11346888888887542  222222221110  11


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....++|+++|+||+|+.....+.  .++.+.+.+                     .  .++++++|||++|.||+++|.
T Consensus       107 ~~~~~~piilvgnK~Dl~~~~~v~--~~~~~~~a~---------------------~--~~~~~~e~Sak~g~~i~~~f~  161 (172)
T d2g3ya1         107 RQTEDIPIILVGNKSDLVRCREVS--VSEGRACAV---------------------V--FDCKFIETSAAVQHNVKELFE  161 (172)
T ss_dssp             GGGTTSCEEEEEECTTCGGGCCSC--HHHHHHHHH---------------------H--HTCEEEECBTTTTBSHHHHHH
T ss_pred             cccCCceEEEEecccccccccccc--HHHHHHHHH---------------------H--cCCeEEEEeCCCCcCHHHHHH
Confidence            123579999999999987543210  011111111                     1  147899999999999999999


Q ss_pred             HHHHHHHH
Q 020549          307 AVEESAQE  314 (324)
Q Consensus       307 ~i~~~~~~  314 (324)
                      .|++.+..
T Consensus       162 ~l~~~i~~  169 (172)
T d2g3ya1         162 GIVRQVRL  169 (172)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.3e-19  Score=148.95  Aligned_cols=171  Identities=15%  Similarity=0.160  Sum_probs=97.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .||+++|.+|||||||+++|+...+...+.+++..      .......++                              
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~------~~~~~~~~~------------------------------   46 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE------NYTASFEID------------------------------   46 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE------EEEEEEECS------------------------------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee------ccccccccc------------------------------
Confidence            47999999999999999999998876543322100      000000000                              


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCC--Cchh-HHHhHHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA--NPMT-FMSNMLYACSI  226 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~--~~~~-~~~~~~~~~~~  226 (324)
                                   .....+.|||++|++.+......        .-..+|++++|+|..+..  .... +|...+    .
T Consensus        47 -------------~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~----~  101 (179)
T d1m7ba_          47 -------------TQRIELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPETLDSVLKKWKGEI----Q  101 (179)
T ss_dssp             -------------SCEEEEEEEEECCSGGGTTTGGG--------GCTTCSEEEEEEETTCHHHHHHHHHTHHHHH----H
T ss_pred             -------------ceEEeeccccccccccccccccc--------hhhhhhhhheeeecccCCCHHHHHHHHHHHH----h
Confidence                         22457789999998776221111        113468888888875432  2211 222211    2


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC-ChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA-GIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~-gv~~l~  305 (324)
                      ....+.|+++|+||+|+..............        .    ..+..+.+..+..-....++++|||++|. ||+++|
T Consensus       102 ~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~--------~----~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F  169 (179)
T d1m7ba_         102 EFCPNTKMLLVGCKSDLRTDVSTLVELSNHR--------Q----TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF  169 (179)
T ss_dssp             HHCTTCEEEEEEECGGGGGCHHHHHHHHTTT--------C----CCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHH
T ss_pred             ccCCcceEEEEEecccccccchhhHHHhhhh--------c----CcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHH
Confidence            2335899999999999876432211100000        0    00000011111111234689999999998 599999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      +.+.+.+.
T Consensus       170 ~~~~~~~l  177 (179)
T d1m7ba_         170 HVATLACV  177 (179)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.3e-20  Score=150.79  Aligned_cols=163  Identities=13%  Similarity=0.114  Sum_probs=95.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      -++|+++|.+|||||||++++++..+.....       .....+  ...+.+.                           
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~-------t~~~~~--~~~i~v~---------------------------   48 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEK-------TESEQY--KKEMLVD---------------------------   48 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCCC-------SSCEEE--EEEEEET---------------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcCC-------ccceeE--EEEeecC---------------------------
Confidence            3789999999999999999999987653210       000000  0000000                           


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCC--CCCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~--~~~~~~~~~~~~~~~~~  226 (324)
                                    +....+.||||+|+.++.           +++.  +|++|+|.|..+  ++.....|...+..+..
T Consensus        49 --------------~~~~~l~i~Dt~g~~~~~-----------~~~~--ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~  101 (175)
T d2bmja1          49 --------------GQTHLVLIREEAGAPDAK-----------FSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRG  101 (175)
T ss_dssp             --------------TEEEEEEEEECSSCCCHH-----------HHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC
T ss_pred             --------------ceEEEEEEeecccccccc-----------cccc--cceeEEEeecccchhhhhhHHHHHHHHHHhh
Confidence                          224678899999987641           1111  477777777654  23333344333322111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+++|+||.|+.......-...+...+.+                     + ....++++|||++|.||+++|.
T Consensus       102 ~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~---------------------~-~~~~~~~e~SAk~~~~v~~~F~  159 (175)
T d2bmja1         102 EGRGGLALALVGTQDRISASSPRVVGDARARALCA---------------------D-MKRCSYYETCATYGLNVDRVFQ  159 (175)
T ss_dssp             --CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH---------------------T-STTEEEEEEBTTTTBTHHHHHH
T ss_pred             cccCCccEEEEeeecCcchhhhcchhHHHHHHHHH---------------------H-hCCCeEEEeCCCCCcCHHHHHH
Confidence            22356799999999997543211000011111110                     1 1246899999999999999999


Q ss_pred             HHHHHHHHHH
Q 020549          307 AVEESAQEFM  316 (324)
Q Consensus       307 ~i~~~~~~~~  316 (324)
                      .|++.+....
T Consensus       160 ~l~~~i~~~~  169 (175)
T d2bmja1         160 EVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9998776543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.78  E-value=1.2e-18  Score=147.70  Aligned_cols=107  Identities=19%  Similarity=0.264  Sum_probs=70.0

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCC-eEEEeecccc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV  243 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl  243 (324)
                      +..+.|+||||+.+|-.      .+...  ...+|++++|||+.+++.+++.     +.+..+...+++ +|+++||+|+
T Consensus        88 ~~~~~iiD~PGH~dfv~------~~~~g--~~~aD~ailVvda~~G~~~Qt~-----e~~~~~~~~gv~~iiv~vNK~D~  154 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTR------NMATG--ASTCDLAIILVDARYGVQTQTR-----RHSYIASLLGIKHIVVAINKMDL  154 (222)
T ss_dssp             SEEEEEEECCCSGGGHH------HHHHH--HTTCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEEECTTT
T ss_pred             ceEEEEEeccchhhhhh------hhccc--cccCceEEEEeccccCcccchH-----HHHHHHHHcCCCEEEEEEEcccc
Confidence            56789999999888622      22221  2567999999999999988863     334556667766 6889999999


Q ss_pred             CChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-ccCceeeeccccCCChHH
Q 020549          244 AQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-KNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       244 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~iv~vSA~~g~gv~~  303 (324)
                      ++..  .......++..+.+.+                   .+. ..+++||+||++|.||.+
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGI-------------------AFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTT-------------------TCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccceehhhhHHHHhhhhHhh-------------------ccCCCceEEEEEEcccCccCCc
Confidence            8743  2222222333222211                   111 235789999999999844

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.78  E-value=5.9e-19  Score=144.09  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+|+|.+|||||||+++|.+..+...    .....  .....                             ..  
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~----~~~~~--~~~~~-----------------------------~~--   55 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT----SPTIG--SNVEE-----------------------------IV--   55 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE----ECCSC--SSCEE-----------------------------EE--
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc----ccccc--eeEEE-----------------------------Ee--
Confidence            4568999999999999999999998765421    10000  00000                             00  


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      .....+.+||++|......  ....    ..  ..++.+++++|..+.................
T Consensus        56 ----------------~~~~~~~~~d~~~~~~~~~--~~~~----~~--~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~  111 (177)
T d1zj6a1          56 ----------------INNTRFLMWDIGGQESLRS--SWNT----YY--TNTEFVIVVVDSTDRERISVTREELYKMLAH  111 (177)
T ss_dssp             ----------------ETTEEEEEEECCC----CG--GGHH----HH--TTCCEEEEEEETTCTTTHHHHHHHHHHHHTS
T ss_pred             ----------------ecceEEEEecccccccccc--chhh----hh--ccceeeeeecccccccchhhhhhhhhhhhhc
Confidence                            2256888999999766421  1111    11  2357888999886544332222111211122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ......|+++|+||+|+.......+..+.+. +  .                .   ......+++++||++|+||+++++
T Consensus       112 ~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~-~--~----------------~---~~~~~~~~~~~Sa~tg~Gi~e~~~  169 (177)
T d1zj6a1         112 EDLRKAGLLIFANKQDVKECMTVAEISQFLK-L--T----------------S---IKDHQWHIQACCALTGEGLCQGLE  169 (177)
T ss_dssp             GGGTTCEEEEEEECTTSTTCCCHHHHHHHHT-G--G----------------G---CCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             ccccceEEEEEEEcccccccCcHHHHHHHHH-H--H----------------h---hHhcCCEEEEEeCCCCCCHHHHHH
Confidence            2346789999999999876543222221111 0  0                0   011346899999999999999999


Q ss_pred             HHHHHH
Q 020549          307 AVEESA  312 (324)
Q Consensus       307 ~i~~~~  312 (324)
                      .|.+.+
T Consensus       170 ~L~~~l  175 (177)
T d1zj6a1         170 WMMSRL  175 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.4e-18  Score=150.99  Aligned_cols=133  Identities=17%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      ..|+|+|+.|+|||||+.+|+.......+...+-... ++.++..      ..        .+.+...+....    .+.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~-~~~D~~~------~E--------~~r~~si~~~~~----~~~   67 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGA-ATMDFME------QE--------RERGITITAAVT----TCF   67 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC----------------------------------CCCCCCCSEE----EEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCc-eEEeccH------HH--------HhcCCcccccee----eec
Confidence            3599999999999999999987655543322221110 0100000      00        011111111111    111


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK  229 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  229 (324)
                                   +.+.++.|+||||+.+|...      +...+  ..+|.+|+|||+.++.+.++.     ..++....
T Consensus        68 -------------~~~~~~n~iDtPG~~dF~~e------~~~~l--~~~D~avlVvda~~Gv~~~T~-----~~w~~a~~  121 (276)
T d2bv3a2          68 -------------WKDHRINIIDAPGHVDFTIE------VERSM--RVLDGAIVVFDSSQGVEPQSE-----TVWRQAEK  121 (276)
T ss_dssp             -------------ETTEEEEEECCCSSSSCSTT------HHHHH--HHCCEEEEEEETTTSSCHHHH-----HHHHHHHT
T ss_pred             -------------cCCeEEEEecCCchhhhHHH------HHHHH--HhhhheEEeccccCCcchhHH-----HHHHHHHH
Confidence                         45789999999999998431      11111  225999999999999998872     23356677


Q ss_pred             cCCCeEEEeeccccCChH
Q 020549          230 TRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       230 ~~~p~ilv~NK~Dl~~~~  247 (324)
                      .++|.|+++||+|....+
T Consensus       122 ~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2         122 YKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             TTCCEEEEEECTTSTTCC
T ss_pred             cCCCEEEEEecccccccc
Confidence            899999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.9e-19  Score=146.47  Aligned_cols=163  Identities=17%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|.+|||||||+++|++..+...+.++.       . ..+.+    ..                  +...    
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~-------~-~~~~~----~~------------------i~~~----   48 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI-------G-AAFLT----QR------------------VTIN----   48 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS-------S-EEEEE----EE------------------EEET----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-------c-ceeec----cc------------------cccc----
Confidence            3689999999999999999999987765332111       0 00000    00                  0000    


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                    .....+.+|||+|++++..   ..   ...+  ..+|++++++|..+.  +.....|.   .....
T Consensus        49 --------------~~~~~l~i~d~~g~~~~~~---~~---~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~---~~~~~  103 (170)
T d1ek0a_          49 --------------EHTVKFEIWDTAGQERFAS---LA---PMYY--RNAQAALVVYDVTKPQSFIKARHWV---KELHE  103 (170)
T ss_dssp             --------------TEEEEEEEEEECCSGGGGG---GH---HHHH--TTCSEEEEEEETTCHHHHHHHHHHH---HHHHH
T ss_pred             --------------cccccccccccCCchhHHH---HH---HHHH--hccceEEEEEeCCcccchhhhhhhh---hhhcc
Confidence                          2246788999999877521   11   1112  345888888887652  22222222   11223


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHH-HHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEW-MQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYF  305 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~  305 (324)
                      ......|+++|+||+|+.+....... .++...+.+                     .  .++++++|||++|.||+++|
T Consensus       104 ~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~---------------------~--~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_         104 QASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE---------------------E--KGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             HSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH---------------------H--HTCEEEECCTTTCTTHHHHH
T ss_pred             ccccccceeeeecccccccccchhhhhHHHHHHHHH---------------------H--cCCEEEEecCCCCcCHHHHH
Confidence            34457899999999998643210000 011111111                     1  14689999999999999999


Q ss_pred             HHHHHHHH
Q 020549          306 KAVEESAQ  313 (324)
Q Consensus       306 ~~i~~~~~  313 (324)
                      ..|.+.++
T Consensus       161 ~~i~~~i~  168 (170)
T d1ek0a_         161 LGIGEKIP  168 (170)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHHhc
Confidence            99987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.6e-19  Score=144.01  Aligned_cols=159  Identities=18%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      .++|+++|.+|||||||+++|++..+......+.       . .....    ..                  ...     
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~-------~-~~~~~----~~------------------~~~-----   46 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI-------G-VDFRE----RA------------------VDI-----   46 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC-------S-CCEEE----EE------------------EEE-----
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccc-------c-cccce----ee------------------eee-----
Confidence            4689999999999999999999887664322110       0 00000    00                  000     


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHHHhHHHHHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI  226 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~~~~~~~~~~  226 (324)
                                   ......+.+||++|....+.  ..   ...++  ..+|++++|+|..+.  +.....|...+  ...
T Consensus        47 -------------~~~~~~~~~~~~~~~~~~~~--~~---~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i--~~~  104 (165)
T d1z06a1          47 -------------DGERIKIQLWDTAGQERFRK--SM---VQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEEC--KQH  104 (165)
T ss_dssp             -------------TTEEEEEEEEECCCSHHHHT--TT---HHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHH--HHH
T ss_pred             -------------eccceEEEEEeccCchhhcc--cc---ceeee--cCCCceEEEEEeehhhhhhhhhhhhHHH--Hhh
Confidence                         02245778999999765421  11   11112  346888888887542  22222232211  122


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeecccc---CCChHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVS---GAGIEA  303 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~---g~gv~~  303 (324)
                      ....++|+++|+||+|+.....+  ..++...+.+                     +  -++++++|||++   +.||++
T Consensus       105 ~~~~~~pi~lvgnK~Dl~~~~~v--~~~~~~~~~~---------------------~--~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1         105 LLANDIPRILVGNKCDLRSAIQV--PTDLAQKFAD---------------------T--HSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             CCCSCCCEEEEEECTTCGGGCCS--CHHHHHHHHH---------------------H--TTCCEEECCSSSGGGGSCHHH
T ss_pred             ccCCCCeEEEEeccccchhccch--hHHHHHHHHH---------------------H--CCCEEEEEecccCCcCcCHHH
Confidence            23457899999999998764321  0111111111                     1  146899999997   569999


Q ss_pred             HHHHHH
Q 020549          304 YFKAVE  309 (324)
Q Consensus       304 l~~~i~  309 (324)
                      +|..|+
T Consensus       160 ~F~~lA  165 (165)
T d1z06a1         160 IFMTLA  165 (165)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.74  E-value=6.6e-18  Score=136.10  Aligned_cols=164  Identities=20%  Similarity=0.195  Sum_probs=99.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      +..+|+++|.+|||||||+++|++..+.....        ...  ....                        ...    
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~--------~~~--~~~~------------------------~~~----   45 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIP--------TIG--FNVE------------------------TVT----   45 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC--------CSS--EEEE------------------------EEE----
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceec--------ccc--eeee------------------------eec----
Confidence            44789999999999999999999987653110        000  0000                        000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.+||++|..........        .....+.+++++|.....................
T Consensus        46 ---------------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (169)
T d1upta_          46 ---------------YKNLKFQVWDLGGLTSIRPYWRC--------YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE  102 (169)
T ss_dssp             ---------------ETTEEEEEEEECCCGGGGGGGGG--------GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG
T ss_pred             ---------------cCceEEEEeeccccccccccchh--------hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhh
Confidence                           22567889999997664211111        1133578888888765444333222222222223


Q ss_pred             hhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      .....|+++|+||+|+.......+......   ...                   ......++++|||++|+||+++|+.
T Consensus       103 ~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~---~~~-------------------~~~~~~~~~~~SA~~g~gv~e~~~~  160 (169)
T d1upta_         103 ELRKAILVVFANKQDMEQAMTSSEMANSLG---LPA-------------------LKDRKWQIFKTSATKGTGLDEAMEW  160 (169)
T ss_dssp             GGTTCEEEEEEECTTSTTCCCHHHHHHHHT---GGG-------------------CTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred             ccccceEEEEEeeccccccccHHHHHHHHH---HHH-------------------HhcCCCEEEEEeCCCCCCHHHHHHH
Confidence            345689999999999987543222222111   000                   0123468999999999999999999


Q ss_pred             HHHHHHH
Q 020549          308 VEESAQE  314 (324)
Q Consensus       308 i~~~~~~  314 (324)
                      |.+.+.+
T Consensus       161 l~~~l~~  167 (169)
T d1upta_         161 LVETLKS  167 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9987753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.6e-18  Score=137.72  Aligned_cols=164  Identities=16%  Similarity=0.131  Sum_probs=93.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      ||+++|++|||||||+|+|++..++...        |+.......                          ..       
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~--------~t~~~~~~~--------------------------~~-------   40 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQ--------PTWHPTSEE--------------------------LA-------   40 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCC--------CCCSCEEEE--------------------------EC-------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeee--------ceeeEeEEE--------------------------ec-------
Confidence            7999999999999999999998664310        111000000                          00       


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~  230 (324)
                                  ..+....+||++|...+.......        ...++.+++++|........................
T Consensus        41 ------------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  100 (166)
T d2qtvb1          41 ------------IGNIKFTTFDLGGHIQARRLWKDY--------FPEVNGIVFLVDAADPERFDEARVELDALFNIAELK  100 (166)
T ss_dssp             ------------CTTCCEEEEECCCSGGGGGGGGGG--------CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTT
T ss_pred             ------------cCCeeEEEEeeccchhhhhhHhhh--------hhheeeeeeeccccchhhhhhhhHHHHhhhhhhccC
Confidence                        236788999999976653211111        123578889999865433222111111111223346


Q ss_pred             CCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHHHHH
Q 020549          231 RLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEE  310 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~  310 (324)
                      +.|+++++||+|+.......+..+.+.       .....   .....     ......++++|||++|+||+++|++|.+
T Consensus       101 ~~~i~i~~~k~d~~~~~~~~~i~~~~~-------~~~~~---~~~~~-----~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         101 DVPFVILGNKIDAPNAVSEAELRSALG-------LLNTT---GSQRI-----EGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TCCEEEEEECTTSSSCCCHHHHHHHHT-------CSSCC---C---C-----CSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CceEEEEeccccccccCCHHHHHHHhh-------hhhhh---HHHhh-----cccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            789999999999876432222221110       00000   00000     0012357899999999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.2e-17  Score=137.01  Aligned_cols=89  Identities=8%  Similarity=0.060  Sum_probs=59.5

Q ss_pred             CcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHH
Q 020549          198 PTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSL  277 (324)
Q Consensus       198 ~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  277 (324)
                      .+.++++.+.........     ...+........++++++||+|++.........+.+....                 
T Consensus        99 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l-----------------  156 (188)
T d1puia_          99 LQGLVVLMDIRHPLKDLD-----QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV-----------------  156 (188)
T ss_dssp             EEEEEEEEETTSCCCHHH-----HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH-----------------
T ss_pred             eeEEEEeecccccchhHH-----HHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHH-----------------
Confidence            356666677766554433     1222445567889999999999998765544333332111                 


Q ss_pred             HHhHHHHhccCceeeeccccCCChHHHHHHHHHHH
Q 020549          278 SLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESA  312 (324)
Q Consensus       278 ~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~  312 (324)
                          ..+....+++++||++|.||++|++.|.+.+
T Consensus       157 ----~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         157 ----LAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             ----GGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ----HhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence                1233456899999999999999999988764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.74  E-value=9.5e-18  Score=145.41  Aligned_cols=130  Identities=23%  Similarity=0.247  Sum_probs=79.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+|+|+.|+|||||+.+|+...........+       ..  +.+..|....      -...+.....+...    +. 
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v-------~~--g~~~~D~~~~------E~~r~~ti~~~~~~----~~-   63 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRV-------EE--GTTTTDYTPE------AKLHRTTVRTGVAP----LL-   63 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-------GG--TCCSSCCSHH------HHHTTSCCSCEEEE----EE-
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccc-------hh--ccccccchHH------HHHhCCeEEeeccc----cc-
Confidence            48999999999999999997654333221111       00  0111110000      01122222222111    10 


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhc
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT  230 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~  230 (324)
                                  +.+.++.|+||||+.+|..      .+...+  ..+|.+|+|||+.+|...++.     ..++.+...
T Consensus        64 ------------~~~~~~n~iDtPGh~dF~~------e~~~al--~~~D~avlvvda~~Gv~~~t~-----~~~~~~~~~  118 (267)
T d2dy1a2          64 ------------FRGHRVFLLDAPGYGDFVG------EIRGAL--EAADAALVAVSAEAGVQVGTE-----RAWTVAERL  118 (267)
T ss_dssp             ------------ETTEEEEEEECCCSGGGHH------HHHHHH--HHCSEEEEEEETTTCSCHHHH-----HHHHHHHHT
T ss_pred             ------------ccccceeEEccCchhhhhh------hhhhhh--cccCceEEEeeccCCccchhH-----HHHHhhhhc
Confidence                        4467899999999988732      222222  236999999999999988862     233566778


Q ss_pred             CCCeEEEeeccccCC
Q 020549          231 RLPLVLAFNKTDVAQ  245 (324)
Q Consensus       231 ~~p~ilv~NK~Dl~~  245 (324)
                      ++|.++++||+|...
T Consensus       119 ~~p~~i~iNk~D~~~  133 (267)
T d2dy1a2         119 GLPRMVVVTKLDKGG  133 (267)
T ss_dssp             TCCEEEEEECGGGCC
T ss_pred             ccccccccccccccc
Confidence            999999999999853

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.7e-17  Score=146.76  Aligned_cols=202  Identities=16%  Similarity=0.156  Sum_probs=114.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccc----
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL----  142 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  142 (324)
                      .+..+|+|.|+||||||||+++|.......+..+.++..||..... .+.-  ..++++    |..+...++..+.    
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~-ggai--lgdr~r----m~~~~~~~~~~ir~~~~  124 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT-GGSI--LGDKTR----MNDLARAEAAFIRPVPS  124 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEECC
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeee-cccc--ccchhH----HHHhccccccccccccc
Confidence            4678999999999999999999999888888889998888754321 1110  011111    1111111111111    


Q ss_pred             -ccccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHH
Q 020549          143 -TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML  221 (324)
Q Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~  221 (324)
                       .....++......+..+.  ..+++++|++|.|....-      ..     ....+|.+++|++...+-.-+.....++
T Consensus       125 ~g~lgg~~~~~~~~~~~~~--~~g~d~iliEtvG~gq~e------~~-----i~~~aD~~l~v~~P~~Gd~iq~~k~gi~  191 (327)
T d2p67a1         125 SGHLGGASQRARELMLLCE--AAGYDVVIVETVGVGQSE------TE-----VARMVDCFISLQIAGGGDDLQGIKKGLM  191 (327)
T ss_dssp             -----CHHHHHHHHHHHHH--HTTCSEEEEEEECCTTHH------HH-----HHTTCSEEEEEECC------CCCCHHHH
T ss_pred             ccccccchhhhhHHHHHHH--hcCCCeEEEeeccccccc------hh-----hhhccceEEEEecCCCchhhhhhchhhh
Confidence             111223344445555555  337899999999965420      00     1234689999988766543332222222


Q ss_pred             HHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCCh
Q 020549          222 YACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGI  301 (324)
Q Consensus       222 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv  301 (324)
                               .++-++|+||+|+............+......+...+                -....+++.|||++|+||
T Consensus       192 ---------e~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~----------------~~w~p~V~~~SA~~g~Gi  246 (327)
T d2p67a1         192 ---------EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKY----------------DEWQPRVLTCSALEKRGI  246 (327)
T ss_dssp             ---------HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSB----------------TTBCCEEEECBGGGTBSH
T ss_pred             ---------ccccEEEEEeecccchHHHHHHHHHHHHHhhhcccCC----------------CCCcceeEEEEeeCCCCH
Confidence                     2455999999999887654433333332222111100                001257999999999999


Q ss_pred             HHHHHHHHHHHH
Q 020549          302 EAYFKAVEESAQ  313 (324)
Q Consensus       302 ~~l~~~i~~~~~  313 (324)
                      ++|++.|.++..
T Consensus       247 ~eL~~~I~~~~~  258 (327)
T d2p67a1         247 DEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=5.8e-18  Score=145.62  Aligned_cols=119  Identities=17%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhH--HHhHHHHHHHHhhcCCC-eEEEeecc
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTF--MSNMLYACSILYKTRLP-LVLAFNKT  241 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~  241 (324)
                      ...+.|+||||+.+|..      .+.+  ....+|.+++|||+.++..++.+  .......+..+...++| +++++||+
T Consensus       101 ~~~i~~iDtPGH~df~~------~~~~--g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKm  172 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVT------NMIN--GASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM  172 (245)
T ss_dssp             SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred             cceeeeecccccccchh------hhhh--hhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcC
Confidence            56789999999877622      1111  12457999999999988543210  01113333455566776 66899999


Q ss_pred             ccCChH----hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHHH
Q 020549          242 DVAQHE----FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFKA  307 (324)
Q Consensus       242 Dl~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~  307 (324)
                      |++..+    +..++.+.+..+...+.             +.   .....+++||+||++|+||.++++.
T Consensus       173 D~~~~~~~e~~~~ei~~~l~~~l~~i~-------------~~---~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         173 DEPSVQWSEERYKECVDKLSMFLRRVA-------------GY---NSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             TSTTCSSCHHHHHHHHHHHHHHHHHHH-------------CC---CHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHh-------------Cc---CcccCCEEEEeeccCCCCcccchhc
Confidence            997532    22233333322211110             00   0112468999999999999876543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=2.1e-16  Score=132.09  Aligned_cols=119  Identities=19%  Similarity=0.294  Sum_probs=73.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      +.|+|+|+||||||||+|+|++..+..           +++......                        ...      
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~-----------~tt~~~~~~------------------------~~~------   42 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP-----------TVVSQEPLS------------------------AAD------   42 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC-----------BCCCSSCEE------------------------ETT------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC-----------eEEecceEE------------------------EEE------
Confidence            469999999999999999999876542           111110000                        000      


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhH----HHhHHHHHH
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTF----MSNMLYACS  225 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~----~~~~~~~~~  225 (324)
                                   ..+..+.+|||||+....  ......+...  ...++.+++++|+.........    +...+..+.
T Consensus        43 -------------~~~~~~~l~D~~g~~~~~--~~~~~~~~~~--~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~  105 (209)
T d1nrjb_          43 -------------YDGSGVTLVDFPGHVKLR--YKLSDYLKTR--AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE  105 (209)
T ss_dssp             -------------GGGSSCEEEECCCCGGGT--HHHHHHHHHH--GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHH
T ss_pred             -------------eCCeEEEEEecccccchh--hHHHHHHHHH--hhhccccceEEEEecccccHHHHHHHHHHHHHHHH
Confidence                         235678999999987652  1111111111  1234788999998765443322    222233334


Q ss_pred             HHhhcCCCeEEEeeccccCCh
Q 020549          226 ILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       226 ~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      .....++|+++|+||+|+.+.
T Consensus       106 ~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_         106 SSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             HHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHhccCCeEEEEEeeccccc
Confidence            455678999999999999764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=2.8e-17  Score=134.44  Aligned_cols=174  Identities=14%  Similarity=0.156  Sum_probs=89.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      ++..+|+|+|++|||||||+++|++..+....        +....   +.    .                  .+.    
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~--------~~~~~---~~----~------------------~~~----   53 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--------PTLHP---TS----E------------------ELT----   53 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--------------CCCCC---SC----E------------------EEE----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee--------ccccc---ce----e------------------EEE----
Confidence            46688999999999999999999987654211        00000   00    0                  000    


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                                      ..+..+.+||++|+..........        ....+.+++++|....................
T Consensus        54 ----------------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~  109 (186)
T d1f6ba_          54 ----------------IAGMTFTTFDLGGHIQARRVWKNY--------LPAINGIVFLVDCADHERLLESKEELDSLMTD  109 (186)
T ss_dssp             ----------------ETTEEEEEEEECC----CCGGGGG--------GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             ----------------ecccccccccccchhhhhhHHhhh--------hcccceeeeeeeccCccchHHHHHHHHHhhcc
Confidence                            124567899999987753211111        12247888999875432222111111111111


Q ss_pred             HhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCCChHHHHH
Q 020549          227 LYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGAGIEAYFK  306 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~  306 (324)
                      ....+.|+++++||.|+..........+.+. +...  ........+..       ....+.++++|||++|+||+++|+
T Consensus       110 ~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~-~~~~--~~~~~~~~~~~-------~~~~~~~~~~~SA~tg~Gi~e~~~  179 (186)
T d1f6ba_         110 ETIANVPILILGNKIDRPEAISEERLREMFG-LYGQ--TTGKGSVSLKE-------LNARPLEVFMCSVLKRQGYGEGFR  179 (186)
T ss_dssp             GGGTTSCEEEEEECTTSTTCCCHHHHHHHHT-CTTT--CCCSSCCCTTT-------CCSCCEEEEECBTTTTBSHHHHHH
T ss_pred             cccCCCceEEEEeccCccccCCHHHHHHHHh-hccc--chhhhhhhHHH-------hhcCCCEEEEEeCCCCCCHHHHHH
Confidence            2235799999999999876432211211110 0000  00000000000       001235799999999999999999


Q ss_pred             HHHHH
Q 020549          307 AVEES  311 (324)
Q Consensus       307 ~i~~~  311 (324)
                      .|.+.
T Consensus       180 ~l~~~  184 (186)
T d1f6ba_         180 WMAQY  184 (186)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99865

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=8e-16  Score=131.46  Aligned_cols=107  Identities=14%  Similarity=0.218  Sum_probs=67.5

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc-cCCcEEEEEEcCCCCCC-------chhHHHhHHHHHHHHhhcCCC-e
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYKTRLP-L  234 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~  234 (324)
                      .+.++.|+||||+.+|..         ...+. ..+|.+|+|||+..+..       .++     ..++..+...++| +
T Consensus        82 ~~~~i~iiDtPGH~df~~---------~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT-----~eh~~~~~~~gv~~i  147 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIK---------NMITGTSQADCAILIIAGGVGEFEAGISKDGQT-----REHALLAFTLGVRQL  147 (239)
T ss_dssp             SSEEEEEEECCCCTTHHH---------HHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-----HHHHHHHHHTTCCEE
T ss_pred             CCEEEEEEECCCcHHHHH---------HHHHHHHHhCEEEEEEECCCCccccccCchHhH-----HHHHHHHHHcCCCeE
Confidence            467899999999888621         12222 55799999999987632       233     2333455667887 6


Q ss_pred             EEEeeccccCChH--hHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-hccCceeeeccccCCChHH
Q 020549          235 VLAFNKTDVAQHE--FALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       235 ilv~NK~Dl~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~iv~vSA~~g~gv~~  303 (324)
                      |+++||+|+++.+  +..+..+.+..+....                   .+ ...++++|+||..|.|+-+
T Consensus       148 iv~iNKmD~~~~d~~~~~~~~~el~~~l~~~-------------------~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         148 IVAVNKMDSVKWDESRFQEIVKETSNFIKKV-------------------GYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHHHHHHHHHH-------------------TCCGGGCCEEECCTTTCBTTTB
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHhc-------------------CCCCCcEEEEEEEccCCCccee
Confidence            7799999998643  2233333333222211                   11 1236789999999988743

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.7e-16  Score=144.58  Aligned_cols=176  Identities=13%  Similarity=0.028  Sum_probs=99.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+..|+|+|.+|||||||+|+|+|........        .......+|    ++..               .+..    
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~--------~~~g~~~tT----~~~~---------------~~~~----  103 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGA--------AKTGVVEVT----MERH---------------PYKH----  103 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTS--------CCCCC--------CCCE---------------EEEC----
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcc--------CCCCCCCCc----eeee---------------eeec----
Confidence            56889999999999999999999864332110        011111111    0000               0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL  227 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~  227 (324)
                                     .....+.||||||+.....  . ............+|++++++|..  +...+     ...+..+
T Consensus       104 ---------------~~~~~~~l~DtPG~~~~~~--~-~~~~~~~~~~~~~d~~l~~~~~~--~~~~d-----~~l~~~l  158 (400)
T d1tq4a_         104 ---------------PNIPNVVFWDLPGIGSTNF--P-PDTYLEKMKFYEYDFFIIISATR--FKKND-----IDIAKAI  158 (400)
T ss_dssp             ---------------SSCTTEEEEECCCGGGSSC--C-HHHHHHHTTGGGCSEEEEEESSC--CCHHH-----HHHHHHH
T ss_pred             ---------------cCCCeEEEEeCCCcccccc--c-HHHHHHHhhhhcceEEEEecCCC--CCHHH-----HHHHHHH
Confidence                           2256799999999866421  1 11222222234468888888753  33333     2334566


Q ss_pred             hhcCCCeEEEeeccccCChHhH---------HHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHH-HhccCceeeecccc
Q 020549          228 YKTRLPLVLAFNKTDVAQHEFA---------LEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDE-FYKNLKSVGVSSVS  297 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~iv~vSA~~  297 (324)
                      ...++|+++|+||+|.......         ....+.++                 +.....+.. .....+++.+|+..
T Consensus       159 ~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir-----------------~~~~~~l~~~~~~~~~vflvS~~~  221 (400)
T d1tq4a_         159 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR-----------------LNCVNTFRENGIAEPPIFLLSNKN  221 (400)
T ss_dssp             HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH-----------------HHHHHHHHHTTCSSCCEEECCTTC
T ss_pred             HHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHH-----------------HHHHHHHHHcCCCCCCEEEecCCc
Confidence            6789999999999997532211         11111111                 111111111 12345788899765


Q ss_pred             --CCChHHHHHHHHHHHHHHH
Q 020549          298 --GAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       298 --g~gv~~l~~~i~~~~~~~~  316 (324)
                        ..|++.|.+.+.+.+++..
T Consensus       222 ~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         222 VCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             TTSTTHHHHHHHHHHHSCGGG
T ss_pred             ccccCHHHHHHHHHHHhHHHH
Confidence              4699999999999887543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=9.2e-17  Score=136.40  Aligned_cols=115  Identities=15%  Similarity=0.213  Sum_probs=67.2

Q ss_pred             CCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchh--HHHhHHHHHHHHhhcCC-CeEEEeec
Q 020549          164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTRL-PLVLAFNK  240 (324)
Q Consensus       164 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~--~~~~~~~~~~~~~~~~~-p~ilv~NK  240 (324)
                      .+..+.|+||||+.+|..      .+..  ....+|.+|+|||+.+|...++  .+....+.+......++ ++|+++||
T Consensus        79 ~~~~i~iiDtPGH~df~~------~~~~--g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK  150 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFVK------NMIT--GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK  150 (224)
T ss_dssp             SSCEEEECCCSSSTTHHH------HHHH--TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred             CCceeEEeeCCCcHHHHH------HHHH--HHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEc
Confidence            467889999999988722      1111  1255799999999999864432  11122233344444555 57888999


Q ss_pred             cccCChHhHHHHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH---hccCceeeeccccCCChHH
Q 020549          241 TDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF---YKNLKSVGVSSVSGAGIEA  303 (324)
Q Consensus       241 ~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~iv~vSA~~g~gv~~  303 (324)
                      +|+..........+......                 ......+   ....+++|+||.+|.||.+
T Consensus       151 ~D~~~~~~~~~~~~~v~~~i-----------------~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         151 MDLTEPPYDEKRYKEIVDQV-----------------SKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             GGGSSSTTCHHHHHHHHHHH-----------------HHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccCCCccccHHHHHHHHHHH-----------------HhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            99986432222222221111                 1111111   1246789999999999854

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.64  E-value=1.4e-15  Score=135.46  Aligned_cols=201  Identities=17%  Similarity=0.237  Sum_probs=115.2

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc--
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS--  144 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  144 (324)
                      .+..+|+|.|+||||||||+++|+......+..+.++..||.... .++.-.  .++++.    .++...++ .++.+  
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~-~gg~ll--gdr~rm----~~~~~~~~-~~ir~~~  120 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR-TGGSIL--GDKTRM----ARLAIDRN-AFIRPSP  120 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS-SCCCSS--CCGGGS----TTGGGCTT-EEEECCC
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHH-HHhccc--cchhhH----HHHhcccc-eeecccc
Confidence            467889999999999999999999887778889999998885532 221111  122111    01111111 11111  


Q ss_pred             ----ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          145 ----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       145 ----~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                          ...++......+..+.  ..+++++|+.|.|......      .     ....+|+.++|+....+-.-+.....+
T Consensus       121 ~~~~~gg~~~~~~~~i~~~~--~~g~d~iiiETVG~gq~e~------~-----~~~~~D~~v~v~~p~~GD~iQ~~k~gi  187 (323)
T d2qm8a1         121 SSGTLGGVAAKTRETMLLCE--AAGFDVILVETVGVGQSET------A-----VADLTDFFLVLMLPGAGDELQGIKKGI  187 (323)
T ss_dssp             CCSSHHHHHHHHHHHHHHHH--HTTCCEEEEEECSSSSCHH------H-----HHTTSSEEEEEECSCC------CCTTH
T ss_pred             ccccccchhHHHHHHHHhhc--cCCCCeEEEeehhhhhhhh------h-----hhcccceEEEEeeccchhhhhhhhhhH
Confidence                1112333333333444  3478999999998654310      1     113468999999887764443322222


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHhccCceeeeccccCC
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFYKNLKSVGVSSVSGA  299 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~iv~vSA~~g~  299 (324)
                      +         .++-++|+||+|+........ ....+......+...                .-....+++.+||++|.
T Consensus       188 l---------E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~p~V~~~Sa~~g~  242 (323)
T d2qm8a1         188 F---------ELADMIAVNKADDGDGERRASAAASEYRAALHILTPP----------------SATWTPPVVTISGLHGK  242 (323)
T ss_dssp             H---------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCS----------------BTTBCCCEEEEBTTTTB
T ss_pred             h---------hhhheeeEeccccccchHHHHHHHHHHHHHhhccccc----------------ccCCCCceEEEEecCCC
Confidence            2         345599999999887654322 111111100000000                00123689999999999


Q ss_pred             ChHHHHHHHHHHHH
Q 020549          300 GIEAYFKAVEESAQ  313 (324)
Q Consensus       300 gv~~l~~~i~~~~~  313 (324)
                      |+++|++.|.++..
T Consensus       243 Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         243 GLDSLWSRIEDHRS  256 (323)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.3e-16  Score=129.37  Aligned_cols=119  Identities=23%  Similarity=0.361  Sum_probs=67.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccCh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT  150 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  150 (324)
                      .|+|+|++|||||||+++|++..+....        ++.     +++..                     ...    +. 
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~--------~t~-----~~~~~---------------------~~~----~~-   42 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ--------TSI-----TDSSA---------------------IYK----VN-   42 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC--------CCC-----SCEEE---------------------EEE----CS-
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc--------CCe-----eEEEE---------------------EEE----Ee-
Confidence            5899999999999999999997665321        000     00000                     000    00 


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHH-HHH--HH
Q 020549          151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACS--IL  227 (324)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~-~~~--~~  227 (324)
                                 ......+.+||+||+..+..      .+...+ ...++.+++|+|+.............+. .+.  ..
T Consensus        43 -----------~~~~~~~~~~d~~g~~~~~~------~~~~~~-~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~  104 (207)
T d2fh5b1          43 -----------NNRGNSLTLIDLPGHESLRF------QLLDRF-KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA  104 (207)
T ss_dssp             -----------STTCCEEEEEECCCCHHHHH------HHHHHH-GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------eeeeeeeeeeeccccccccc------hhhhhh-hhhccccceEEEcccccccHHHHHHHHHHHHHhHHH
Confidence                       02356788999999866411      111111 1235789999998753322111111111 111  11


Q ss_pred             hhcCCCeEEEeeccccCCh
Q 020549          228 YKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       228 ~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ....+|+++|+||+|+...
T Consensus       105 ~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1         105 LKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             STTCCEEEEEEECTTSTTC
T ss_pred             hhcCCcEEEEEECcccCCC
Confidence            2345899999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=5.6e-16  Score=128.58  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch---------hHHHhHHH-HHHHHhhcCCCe
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM---------TFMSNMLY-ACSILYKTRLPL  234 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~---------~~~~~~~~-~~~~~~~~~~p~  234 (324)
                      ...+.+||++|+..+.......        ...++.+++++|........         ..+...+. .+......+.|+
T Consensus        43 ~~~~~~~D~~gq~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~pi  114 (200)
T d1zcba2          43 NVPFKMVDVGGQRSERKRWFEC--------FDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  114 (200)
T ss_dssp             TEEEEEEEECC-------CTTS--------CTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             eeeeeeecccceeeeccccccc--------ccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceE
Confidence            5678999999987652111110        02346888888877643321         11111111 111122357999


Q ss_pred             EEEeeccccCChHhHH-HHHHhHHHHHHHHhcCccchhhHHHHHHHhHHHHh-----ccCceeeeccccCCChHHHHHHH
Q 020549          235 VLAFNKTDVAQHEFAL-EWMQDFEVFQAAISSDHSYTSTLTNSLSLALDEFY-----KNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       235 ilv~NK~Dl~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                      ++|+||+|+....... .....+.    .....+.......+.....+....     ....++.+||+++.||+.+|+.+
T Consensus       115 ilv~NK~Dl~~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v  190 (200)
T d1zcba2         115 ILFLNKTDLLEEKVQVVSIKDYFL----EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV  190 (200)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCT----TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             EEEeccchhhhhhccccHHHHhCc----cccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHH
Confidence            9999999986432100 0000000    000000001111111111110100     11335579999999999999999


Q ss_pred             HHHHHHHH
Q 020549          309 EESAQEFM  316 (324)
Q Consensus       309 ~~~~~~~~  316 (324)
                      .+.+....
T Consensus       191 ~d~i~~~~  198 (200)
T d1zcba2         191 KDTILHDN  198 (200)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88776543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.7e-15  Score=123.57  Aligned_cols=175  Identities=13%  Similarity=0.121  Sum_probs=93.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      ..+|+++|..|||||||+++|....+++.+..+.              .++                             
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~~--------------~~~-----------------------------   38 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVET--------------HFT-----------------------------   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEEE--------------EEE-----------------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEEEE--------------EEE-----------------------------
Confidence            3689999999999999999998877764332111              000                             


Q ss_pred             ChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCC--CCchhHH----HhHHH
Q 020549          149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFM----SNMLY  222 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~--~~~~~~~----~~~~~  222 (324)
                                    .....+.+|||+|++++.......        -..++.+++++|....  +.....+    .+...
T Consensus        39 --------------~~~~~~~i~D~~Gq~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~   96 (195)
T d1svsa1          39 --------------FKDLHFKMFDVGGQRSERKKWIHC--------FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK   96 (195)
T ss_dssp             --------------ETTEEEEEEEECCSGGGGGGGGGG--------CTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH
T ss_pred             --------------eeeeeeeeeccccccccccchhhc--------ccCCceeeeEEeecccchHHHHhhhhHHHHHHHH
Confidence                          225678999999998873211111        1235777787775432  2221111    11111


Q ss_pred             H----HHHHhhcCCCeEEEeeccccCChHhHHH-HHHhHHHHHHHHhcCccchhhHHHHHHHhHHHH-----hccCceee
Q 020549          223 A----CSILYKTRLPLVLAFNKTDVAQHEFALE-WMQDFEVFQAAISSDHSYTSTLTNSLSLALDEF-----YKNLKSVG  292 (324)
Q Consensus       223 ~----~~~~~~~~~p~ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~iv~  292 (324)
                      .    +......+.|+++++||+|+........ ....+..     .................+...     .....+++
T Consensus        97 ~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  171 (195)
T d1svsa1          97 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPE-----YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF  171 (195)
T ss_dssp             HHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTT-----CCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEE
T ss_pred             HHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhh-----hcCcccHHHHHHHHHHHHHHHhcccCCCcceeEE
Confidence            1    1112245689999999999743211000 0000000     000000000011111111011     01245678


Q ss_pred             eccccCCChHHHHHHHHHHHH
Q 020549          293 VSSVSGAGIEAYFKAVEESAQ  313 (324)
Q Consensus       293 vSA~~g~gv~~l~~~i~~~~~  313 (324)
                      |||++|.||+++|..+.+.+.
T Consensus       172 tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         172 TCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEeECCHhHHHHHHHHHHHHH
Confidence            999999999999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.5e-15  Score=122.71  Aligned_cols=179  Identities=13%  Similarity=0.094  Sum_probs=95.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT  149 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  149 (324)
                      .+|+++|..|||||||+++|....+..  .+++     ++         +...                    ..     
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~~~--~pTi-----G~---------~~~~--------------------~~-----   41 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTT-----GI---------IEYP--------------------FD-----   41 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTSSC--CCCC-----SC---------EEEE--------------------EE-----
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCC--Ccee-----eE---------EEEE--------------------Ee-----
Confidence            689999999999999999998876532  1111     00         0000                    00     


Q ss_pred             hHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCc-------h---hHHHh
Q 020549          150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-------M---TFMSN  219 (324)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~-------~---~~~~~  219 (324)
                                   .....+.+||++|+..+..  ....      .-..++.+++++|.......       .   .....
T Consensus        42 -------------~~~~~~~~~d~~g~~~~~~--~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~  100 (200)
T d2bcjq2          42 -------------LQSVIFRMVDVGGQRSERR--KWIH------CFENVTSIMFLVALSEYDQVLVESDNENRMEESKAL  100 (200)
T ss_dssp             -------------CSSCEEEEEECCCSTTGGG--GGGG------GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHH
T ss_pred             -------------ccceeeeeccccccccccc--cccc------cccccceeeEeeeccchhhhhhhhccccchHHHHHH
Confidence                         2356889999999987622  1111      01235788888887653211       0   01111


Q ss_pred             HHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcC---ccchhhHHHHHHHhHHHH----hccCceee
Q 020549          220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSD---HSYTSTLTNSLSLALDEF----YKNLKSVG  292 (324)
Q Consensus       220 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~l~~~~~~~~~~~----~~~~~iv~  292 (324)
                      ....+......+.|+++|+||+|+........   ..   .......   ..-...........+...    .....+++
T Consensus       101 ~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~  174 (200)
T d2bcjq2         101 FRTIITYPWFQNSSVILFLNKKDLLEEKIMYS---HL---VDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF  174 (200)
T ss_dssp             HHHHHHCGGGSSSEEEEEEECHHHHHHHTTTS---CH---HHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEE
T ss_pred             HHHHHhhhhccCccEEEecchhhhhhhcccch---HH---HHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEE
Confidence            11111222346789999999999864321100   00   0000000   000000011111100010    01234678


Q ss_pred             eccccCCChHHHHHHHHHHHHHHH
Q 020549          293 VSSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       293 vSA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                      +||++|.||+++|+.|.+.+.+..
T Consensus       175 tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         175 TCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEcCHhHHHHHHHHHHHHHHHh
Confidence            999999999999999988886543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.9e-13  Score=121.96  Aligned_cols=68  Identities=25%  Similarity=0.256  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccC
Q 020549          165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA  244 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  244 (324)
                      ...+.|+||||+.+|..      .+...+  ..+|.+++|||+.+|+..++     ...++.+...++|.|+|+||+|..
T Consensus        95 ~~~inliDtPGh~dF~~------ev~~al--~~~D~allVVda~eGv~~qT-----~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSS------EVTAAL--RVTDGALVVVDTIEGVCVQT-----ETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCH------HHHHHH--HTCSEEEEEEETTTBSCHHH-----HHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHH------HHHHHH--hhcCceEEEEecccCcchhH-----HHHHHHHHHcCCCeEEEEECcccc
Confidence            34588999999999832      222222  33699999999999999887     223355667899999999999975


Q ss_pred             C
Q 020549          245 Q  245 (324)
Q Consensus       245 ~  245 (324)
                      .
T Consensus       162 ~  162 (341)
T d1n0ua2         162 L  162 (341)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.38  E-value=1.1e-12  Score=113.08  Aligned_cols=129  Identities=15%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ....|+|+|.+|||||||+|+|++.....            ++..+.+|.....                  +...    
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~------------vs~~~~~T~~~~~------------------~~~~----   76 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVS------------ISPFQSEGPRPVM------------------VSRS----   76 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSSCCCSSCEE------------------EEEE----
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCcee------------ecCCCCcceeEEE------------------EEEE----
Confidence            45789999999999999999999976442            2222223210000                  0000    


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhh-HHHHHHHHhccCCcEEEEEEcCCCC-CCchhHHHhHHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACS  225 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~iv~vvD~~~~-~~~~~~~~~~~~~~~  225 (324)
                                     ..+..+.||||||+.+....... ...+.........++++||++.... +...+..  .+..+.
T Consensus        77 ---------------~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~--~l~~l~  139 (257)
T d1h65a_          77 ---------------RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKL--VAKAIT  139 (257)
T ss_dssp             ---------------ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHH--HHHHHH
T ss_pred             ---------------eccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHH--HHHHHH
Confidence                           23568999999998765221111 1112222222335788888876543 3333311  122222


Q ss_pred             HHh--hcCCCeEEEeeccccCChH
Q 020549          226 ILY--KTRLPLVLAFNKTDVAQHE  247 (324)
Q Consensus       226 ~~~--~~~~p~ilv~NK~Dl~~~~  247 (324)
                      .+.  ..-.++|+|+||+|...++
T Consensus       140 ~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         140 DSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHcchhhhhCEEEEEECcccCCcC
Confidence            222  2235789999999998754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=2.4e-12  Score=108.36  Aligned_cols=186  Identities=13%  Similarity=0.181  Sum_probs=95.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      ...+|+++|..|||||||+++|....+..           ++                              |+...  .
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~~p-----------Ti------------------------------G~~~~--~   41 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHVVL-----------TS------------------------------GIFET--K   41 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHCCC-----------CC------------------------------SCEEE--E
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCcCC-----------CC------------------------------CeEEE--E
Confidence            45789999999999999999997554321           11                              00000  0


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCch------hHHHhHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM------TFMSNML  221 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~------~~~~~~~  221 (324)
                      +.             ..+..+.+||++|++.+..  ....      .-..++.+++++|.+......      ..+.+.+
T Consensus        42 ~~-------------~~~~~~~~~D~~Gq~~~r~--~w~~------~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~  100 (221)
T d1azta2          42 FQ-------------VDKVNFHMFDVGGQRDERR--KWIQ------CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL  100 (221)
T ss_dssp             EE-------------ETTEEEEEEECCCSTTTTT--GGGG------GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHH
T ss_pred             EE-------------ECcEEEEEEecCccceecc--chhh------hcccccceEEEEEccccccccccccchHHHHHHH
Confidence            00             2356889999999987521  1111      012357889999976532110      1111111


Q ss_pred             HHHHH-H---hhcCCCeEEEeeccccCChHhH------HHHHHhHHHHHHHHh--cCccc---hhhHHHHHHHhHHHHh-
Q 020549          222 YACSI-L---YKTRLPLVLAFNKTDVAQHEFA------LEWMQDFEVFQAAIS--SDHSY---TSTLTNSLSLALDEFY-  285 (324)
Q Consensus       222 ~~~~~-~---~~~~~p~ilv~NK~Dl~~~~~~------~~~~~~~~~l~~~~~--~~~~~---~~~l~~~~~~~~~~~~-  285 (324)
                      ..+.. +   ...++|++|++||+|+......      ..+..++........  ...+.   .......+...+.... 
T Consensus       101 ~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~  180 (221)
T d1azta2         101 NLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIST  180 (221)
T ss_dssp             HHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhc
Confidence            11111 1   1256999999999999754321      111111110000000  00000   0001111111111111 


Q ss_pred             ------ccCceeeeccccCCChHHHHHHHHHHHHHHHH
Q 020549          286 ------KNLKSVGVSSVSGAGIEAYFKAVEESAQEFME  317 (324)
Q Consensus       286 ------~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~~  317 (324)
                            ..+-+..+||+++.+|+.+|..+.+.+.....
T Consensus       181 ~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l  218 (221)
T d1azta2         181 ASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL  218 (221)
T ss_dssp             SSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHHh
Confidence                  11234679999999999999999887765443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.2e-11  Score=102.40  Aligned_cols=158  Identities=16%  Similarity=0.188  Sum_probs=85.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc-
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL-  147 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-  147 (324)
                      -+.++|.|+.|||||||+++++...  .+.++.++-++.+-..+.... +....        .......+||+||+... 
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~--~~~riaVI~Ne~g~~~iD~~~-~~~~~--------~~~~el~~gcicc~~~~~   71 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQL-IGDRA--------TQIKTLTNGCICCSRSNE   71 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEE-ECTTS--------CEEEEETTSCEEECTTSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC--CCCcEEEEEecccchhhhhhh-hcccc--------cceEEecCCcceeccchh
Confidence            4678999999999999999999863  355677666654332221110 00000        00111245788886322 


Q ss_pred             cChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHH--HHh-ccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE--AFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~--~~~-~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      +...+...+.........++.+++.+.|..++..   ....+..  .+. ....+.++.+||+..+...   +...-   
T Consensus        72 ~~~~l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~---l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~---~~~~~---  142 (222)
T d1nija1          72 LEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP---IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ---MNQFT---  142 (222)
T ss_dssp             HHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH---HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH---HHHCH---
T ss_pred             HHHHHHHHHHHHhhccCCcceeEEeecccchhhH---HHHHHHhhhcccccccccchhhhhhhhhhhhh---hhhhH---
Confidence            2222333333333333467889999999877521   1111100  011 1123678999999765322   21111   


Q ss_pred             HHHhhcCCCeEEEeeccccCCh
Q 020549          225 SILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ....+....-++|+||+|+.+.
T Consensus       143 ~~~~Qi~~AD~ivlNK~Dl~~~  164 (222)
T d1nija1         143 IAQSQVGYADRILLTKTDVAGE  164 (222)
T ss_dssp             HHHHHHHTCSEEEEECTTTCSC
T ss_pred             HHHHHHHhCCcccccccccccH
Confidence            1112233455899999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=6.9e-12  Score=110.24  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+.+|+|+|.||||||||+|+|++...+.            +.++||+|                  +.||-|++...  
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~------------~anypftT------------------i~pn~g~v~v~--   56 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGN------------PANYPYAT------------------IDPEEAKVAVP--   56 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTS------------TTCCSSCC------------------CCTTEEEEEEC--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCC------------cCCCCccC------------------ccCCeEEEecc--
Confidence            56789999999999999999999865432            56778776                  22333322110  


Q ss_pred             cChHHHHHHHHHHHH-hCCCCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCCC
Q 020549          148 FTTKFDEVISLIERR-ADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR  209 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~~  209 (324)
                       .............. .....+.|+|.||.......+ .++..+...++  .+|++++|||+..
T Consensus        57 -d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir--~~d~lihVV~~f~  117 (296)
T d1ni3a1          57 -DERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVR--AVDAIYQVVRAFD  117 (296)
T ss_dssp             -CHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHT--TCSEEEEEEECCC
T ss_pred             -ccchhhhhhcccCCceecccceeeeccccccccccccccHHHHHHHhh--ccceeEEEEeccC
Confidence             00000000000000 012467899999987653222 35556666554  4699999998855

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.23  E-value=8.3e-11  Score=97.44  Aligned_cols=161  Identities=16%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             ccCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccc
Q 020549           65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS  144 (324)
Q Consensus        65 ~~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (324)
                      +.+.+..|+++|++||||||.+-.|.......+..+.+++.|....          .....+..+.+..++......  .
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~----------ga~eQL~~~a~~l~v~~~~~~--~   75 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRP----------AALEQLQQLGQQIGVPVYGEP--G   75 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSH----------HHHHHHHHHHHHHTCCEECCT--T
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecccc----------chhHHHHHhccccCcceeecc--c
Confidence            3456788999999999999999999877665666777766553211          111112222233332211000  0


Q ss_pred             ccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHH
Q 020549          145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC  224 (324)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~  224 (324)
                      ...+..-+.+.+.  .....+.+++|+||||...+.........+.........+-+++|+++..+........      
T Consensus        76 ~~~~~~~~~~a~~--~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~------  147 (211)
T d1j8yf2          76 EKDVVGIAKRGVE--KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS------  147 (211)
T ss_dssp             CCCHHHHHHHHHH--HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH------
T ss_pred             chhhhHHHHHHHH--HhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHh------
Confidence            0011111111111  11245789999999995432111111223333333344678899999977654443221      


Q ss_pred             HHHhhcCCCeEEEeeccccCCh
Q 020549          225 SILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       225 ~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                      ......++ --++++|.|....
T Consensus       148 ~~~~~~~~-~~lI~TKlDet~~  168 (211)
T d1j8yf2         148 KFNQASKI-GTIIITKMDGTAK  168 (211)
T ss_dssp             HHHHHCTT-EEEEEECTTSCSC
T ss_pred             hhhcccCc-ceEEEecccCCCc
Confidence            22222333 3477999997653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=2.4e-11  Score=107.78  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHhccc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +|+|+|.||||||||+|+|++...
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~   25 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDV   25 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC---
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCC
Confidence            699999999999999999998754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.10  E-value=9.6e-11  Score=101.85  Aligned_cols=100  Identities=17%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF  148 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  148 (324)
                      +.+|+|||.||||||||+|+|++....             ..+||++|                  +.||-|++.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~-------------~~~ypf~t------------------i~pn~gvv~v~---   47 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIE-------------AANYPFCT------------------IEPNTGVVPMP---   47 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-------------------CCCC------------------CCCCSSEEECC---
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCc-------------cccCCCCC------------------CCCceEEEecc---
Confidence            578999999999999999999987543             45677776                  34455544210   


Q ss_pred             ChHHHHHHHHHHHHhCC-----CCEEEEeCCCCcchhhhh-hhHHHHHHHHhccCCcEEEEEEcCC
Q 020549          149 TTKFDEVISLIERRADH-----LDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTP  208 (324)
Q Consensus       149 ~~~~~~~~~~~~~~~~~-----~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~iv~vvD~~  208 (324)
                      .    .++..+......     ..+.|+|.||.......+ .++..+++.++.  +|++++|||+.
T Consensus        48 d----~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~--~d~LihVVr~f  107 (278)
T d1jala1          48 D----PRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRE--TDAIGHVVRCF  107 (278)
T ss_dssp             C----HHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHT--CSEEEEEEECS
T ss_pred             c----HhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCccHHHHHHHHh--ccceEEEeecc
Confidence            0    111111111212     357799999987753322 255556666654  69999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.3e-09  Score=90.33  Aligned_cols=155  Identities=17%  Similarity=0.107  Sum_probs=81.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL  145 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (324)
                      ..++..|+++|++||||||.+-.|.......+..+.++..|....          .....+..+.+.+++......    
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~----------gA~eQL~~~a~~l~i~~~~~~----   73 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA----------AAIEQLKIWGERVGATVISHS----   73 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH----------HHHHHHHHHHHHHTCEEECCS----
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccccc----------chhHHHHHHhhhcCccccccC----
Confidence            356778999999999999999999877666667777766553210          111112222223322111000    


Q ss_pred             cccChHHHHHHH--HHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhc------cCCcEEEEEEcCCCCCCchhHH
Q 020549          146 NLFTTKFDEVIS--LIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS------TFPTVVTYVVDTPRSANPMTFM  217 (324)
Q Consensus       146 ~~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~------~~~d~iv~vvD~~~~~~~~~~~  217 (324)
                        -.........  .......+.+++|+||||....  .......+......      ...+-+++|+|+..+.......
T Consensus        74 --~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~--d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~  149 (213)
T d1vmaa2          74 --EGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA  149 (213)
T ss_dssp             --TTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHcCCCEEEEeccccccc--hHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhh
Confidence              0011111111  1122245789999999995443  11222222222221      1246789999996543332222


Q ss_pred             HhHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          218 SNMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       218 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                            .......+ +-=++++|.|-..
T Consensus       150 ------~~~~~~~~-~~~lI~TKlDe~~  170 (213)
T d1vmaa2         150 ------KIFKEAVN-VTGIILTKLDGTA  170 (213)
T ss_dssp             ------HHHHHHSC-CCEEEEECGGGCS
T ss_pred             ------hhhccccC-CceEEEecccCCC
Confidence                  12222232 4468999999754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.7e-09  Score=89.23  Aligned_cols=157  Identities=16%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +.+..|+++|++||||||.+-.|.......+..+.++..|...          +.....+..+.+..++........  .
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R----------~gA~eQL~~~a~~l~v~~~~~~~~--~   74 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR----------AAAVEQLQVWGQRNNIPVIAQHTG--A   74 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC----------HHHHHHHHHHHHHTTCCEECCSTT--C
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc----------ccchhhhhhhhhhcCCcccccccC--C
Confidence            4567899999999999999999987766666777776555321          111222233334444322111000  0


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHh---c---cCCcEEEEEEcCCCCCCchhHHHhH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA---S---TFPTVVTYVVDTPRSANPMTFMSNM  220 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~---~---~~~d~iv~vvD~~~~~~~~~~~~~~  220 (324)
                      .+..-+......+  ...+.+++|+||||-...  ......++.+...   .   ...+-+++|+|+..+........  
T Consensus        75 d~~~~l~~~~~~a--~~~~~d~ilIDTaGr~~~--d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~--  148 (211)
T d2qy9a2          75 DSASVIFDAIQAA--KARNIDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAK--  148 (211)
T ss_dssp             CHHHHHHHHHHHH--HHTTCSEEEECCCCCGGG--HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHH--
T ss_pred             CHHHHHHHHHHHH--HHcCCCEEEeccCCCccc--cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHh--
Confidence            0111111111112  235789999999995432  1122223332222   1   12578899999976544333221  


Q ss_pred             HHHHHHHhhcCCCeEEEeeccccCCh
Q 020549          221 LYACSILYKTRLPLVLAFNKTDVAQH  246 (324)
Q Consensus       221 ~~~~~~~~~~~~p~ilv~NK~Dl~~~  246 (324)
                          ......+ +-=++++|.|-...
T Consensus       149 ----~~~~~~~-~~~lIlTKlDe~~~  169 (211)
T d2qy9a2         149 ----LFHEAVG-LTGITLTKLDGTAK  169 (211)
T ss_dssp             ----HHHHHSC-CCEEEEECCTTCTT
T ss_pred             ----hhhhccC-CceEEEeecCCCCC
Confidence                2222232 44789999997543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=7e-10  Score=93.33  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=79.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc-------------chh-----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-------------DIR-----------  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~~~-----------  121 (324)
                      ..++..++|+|++|||||||++.+.+...+..+.+.+.+.+..... +....+             .+.           
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~  107 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK  107 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEEEC------CCCHHHHHHTTCC--C
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-cccceEEEEeechhhcccchHHHHHHHHHHHcC
Confidence            4567889999999999999999999999888888887766542211 111111             000           


Q ss_pred             -----cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       122 -----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                           ...++.++++.+++.......+  ..+|.|++|++.++++...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~LSGGq~QRvaiAraL~~~P~iLllDEPt  164 (239)
T d1v43a3         108 FPKDEIDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPL  164 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhcCCh--hhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence                 1224668899999876444333  469999999999999999999999999884

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.05  E-value=1.3e-09  Score=90.96  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=80.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc-------------c-------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-------------D-------------  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~-------------  119 (324)
                      .+++..++|+|++|||||||++.|.+...+..+.+.+.+.+..-.. +....+             .             
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~  101 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK  101 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc-hhHhcceeeccccccCccccHHHHHHHHHhhcc
Confidence            4577889999999999999999999999888888888766543211 000000             1             


Q ss_pred             hhcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .....++.++++.+++......  ....+|.|++|++.++++...+++++|+|.|-
T Consensus       102 ~~~~~~~~~~l~~~~l~~~~~~--~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2         102 IKDPKRVLDTARDLKIEHLLDR--NPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             CCCHHHHHHHHHHTTCTTTTTS--CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             ccHHHHHHHHHHHhcchhhHhC--ChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            1223357788899988754433  33469999999999999999999999999884

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.04  E-value=1.1e-09  Score=92.14  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------------------cc---ccccc----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------------------LP---FAANI----  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------------------~~---~~~~~----  118 (324)
                      .+++..++|+|++|||||||++.|.+...+..+.+.+.+.+..-..                    +|   ...++    
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l  107 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL  107 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhh
Confidence            4567889999999999999999999988777766666554331100                    00   00011    


Q ss_pred             ---ch---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          119 ---DI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       119 ---~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         +.   ....++.++++.+++.......  ...+|.|++|++.++++...+++++|.|.|-
T Consensus       108 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~--p~~LSGGqkQRvaiARaL~~~P~llllDEPt  168 (242)
T d1oxxk2         108 TNMKMSKEEIRKRVEEVAKILDIHHVLNHF--PRELSGAQQQRVALARALVKDPSLLLLDEPF  168 (242)
T ss_dssp             TTSSCCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HhhcCCHHHHHHHHHHHHhhcChHhhhhCC--hhhCCHHHHhHHHHHhHHhhcccceeecCCc
Confidence               00   0123577899999996543333  3469999999999999999999999999883

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.3e-09  Score=91.27  Aligned_cols=107  Identities=12%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccccccccc-------------------c-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-------------------D-------  119 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------~-------  119 (324)
                      ..++..++|+|++|||||||++.+.+...+..+.+.+.+.+..-.. +....+                   .       
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~  101 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERGVGMVFQSYALYPHLSVAENMSFGLKLAG  101 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC-GGGTCEEEECSSCCC------------------
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc-hhhceeeeeccccccccchhHHHHHHHHHHHcC
Confidence            3567889999999999999999999998888887777766542111 000001                   0       


Q ss_pred             h-h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          120 I-R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       120 ~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      . +  ...++.++++.+++......  ....+|.|++|++.++++...+++++|.|.|-
T Consensus       102 ~~~~~~~~~v~~~l~~~~l~~~~~~--~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2         102 AKKEVINQRVNQVAEVLQLAHLLDR--KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             ---CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSEEEEESTT
T ss_pred             CCHHHHHHHHHHHHHhCCChhhhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            0 0  11246788999998754332  33469999999999999999999999999884

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.02  E-value=1.8e-09  Score=90.92  Aligned_cols=108  Identities=17%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------c---cccccc----ch-------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------L---PFAANI----DI-------  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------~---~~~~~~----~~-------  120 (324)
                      .+++..++|+|++|||||||++.|.+...+..+.+.+.+.+.....           +   +.....    .+       
T Consensus        26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~  105 (240)
T d1g2912          26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP  105 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHH
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhh
Confidence            3567889999999999999999999998887777766554421100           0   000000    00       


Q ss_pred             -------hc--HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          121 -------RD--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       121 -------~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             +.  ..++.++++.+++......  ....+|.|++|++.++++...+++++|.|.|-
T Consensus       106 ~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~--~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt  167 (240)
T d1g2912         106 LKLRKVPRQEIDQRVREVAELLGLTELLNR--KPRELSGGQRQRVALGRAIVRKPQVFLMDEPL  167 (240)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHTCGGGTTC--CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhHhcC--ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence                   11  1246788999998754333  33469999999999999999999999999884

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.98  E-value=3.7e-09  Score=88.73  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------ccccc----ccchh--------------cH
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------LPFAA----NIDIR--------------DT  123 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------~~~~~----~~~~~--------------~~  123 (324)
                      ..++|+|++|||||||++.|.+...+..+.+.+.+.+..-..        .+...    +..+.              ..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~  104 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHH
Confidence            468999999999999999999999888888877665432110        00000    00011              11


Q ss_pred             HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .++.++++.+++.......+  ..+|.|++|++.++++...+++++|+|.|-
T Consensus       105 ~~v~~~l~~~gl~~~~~~~~--~~LSGG~kQRvaiAral~~~P~illlDEPt  154 (240)
T d2onka1         105 RRVREMAEKLGIAHLLDRKP--ARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCG--GGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             HHHHHHHHhcCcHhhhhCCh--hhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence            25678899999876444333  479999999999999999999999999884

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.98  E-value=1.1e-08  Score=84.30  Aligned_cols=154  Identities=20%  Similarity=0.129  Sum_probs=83.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      .++..|+++|++||||||.+-.|.......+..+.++..|....          .....+..+.+.+++......     
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~----------gA~eQL~~~a~~l~i~~~~~~-----   68 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA----------AGGTQLSEWGKRLSIPVIQGP-----   68 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST----------THHHHHHHHHHHHTCCEECCC-----
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccc----------cchhhHhhcccccCceEEecc-----
Confidence            45678999999999999999999887666677777766553221          111112222333332211000     


Q ss_pred             ccChHHHHHHHH--HHHHhCCCCEEEEeCCCCcchhhhhhhHHHH---HHHHh---ccCCcEEEEEEcCCCCCCchhHHH
Q 020549          147 LFTTKFDEVISL--IERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFA---STFPTVVTYVVDTPRSANPMTFMS  218 (324)
Q Consensus       147 ~~~~~~~~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~---~~~~~---~~~~d~iv~vvD~~~~~~~~~~~~  218 (324)
                       -.......+..  ......+.+++|+||||....  .......+   .+...   ....+-+++|+|+..+........
T Consensus        69 -~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~--d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~  145 (207)
T d1okkd2          69 -EGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAK  145 (207)
T ss_dssp             -TTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHH
T ss_pred             -CCccHHHHHHHHHHHHHHCCCCEEEcCccccchh--hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHH
Confidence             00111111111  111233789999999995443  11222222   22221   124578899999987765444332


Q ss_pred             hHHHHHHHHhhcCCCeEEEeeccccCC
Q 020549          219 NMLYACSILYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       219 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~  245 (324)
                            ......+ +-=++++|.|-..
T Consensus       146 ------~~~~~~~-~~~lI~TKlDet~  165 (207)
T d1okkd2         146 ------KFHEAVG-LTGVIVTKLDGTA  165 (207)
T ss_dssp             ------HHHHHHC-CSEEEEECTTSSC
T ss_pred             ------HhhhccC-CceEEEeccCCCC
Confidence                  2222233 3367999999754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.2e-09  Score=90.32  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=78.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc--------------------ccccc---cc----
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------------------LPFAA---NI----  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~--------------------~~~~~---~~----  118 (324)
                      ..++..++|+|++|||||||++.|.+...+..+.+.+.+.+..-..                    ++.-+   ++    
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l  107 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL  107 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHH
Confidence            4567889999999999999999999998888777777665532110                    00000   00    


Q ss_pred             ---ch-h--cHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          119 ---DI-R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       119 ---~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         .. .  ...++.++++.+++........  ..+|.|++|++.++++...+++++|+|.|-
T Consensus       108 ~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~--~~LSGG~~QRvaiAraL~~~P~lLllDEPt  168 (240)
T d3dhwc1         108 ELDNTPKDEVKRRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEAT  168 (240)
T ss_dssp             HTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB--SCCCHHHHHHHHHHHHHHTCCSEEEEESGG
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--hhCCHHHHHHHHHhhhhccCCCeEEecccc
Confidence               00 0  1225678899999976543333  479999999999999999999999999884

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.95  E-value=3.5e-09  Score=87.30  Aligned_cols=156  Identities=18%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCccccccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN  146 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (324)
                      +.+..|+++|++||||||.+-.|.......+.++.++..|....          ........+.+.+++........  +
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~----------gA~eQL~~~a~~l~v~~~~~~~~--~   75 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP----------AAREQLRLLGEKVGVPVLEVMDG--E   75 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH----------HHHHHHHHHHHHHTCCEEECCTT--C
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc----------hHHHHHHHHHHhcCCcccccccc--c
Confidence            34456899999999999999999887766667777765553211          11111222233333321110000  0


Q ss_pred             ccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHH
Q 020549          147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI  226 (324)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~  226 (324)
                      .............  .....+++||||||-...  .......+........++-+++|+|+..+........      ..
T Consensus        76 ~~~~~~~~~~~~~--~~~~~d~vlIDTaGr~~~--d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~------~f  145 (207)
T d1ls1a2          76 SPESIRRRVEEKA--RLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR------AF  145 (207)
T ss_dssp             CHHHHHHHHHHHH--HHHTCCEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH------HH
T ss_pred             hhhHHHHHHHHHH--hhccCcceeecccccchh--hhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHH------HH
Confidence            0111111111111  234789999999995443  2223334444444455788999999866543333221      11


Q ss_pred             HhhcCCCeEEEeeccccCC
Q 020549          227 LYKTRLPLVLAFNKTDVAQ  245 (324)
Q Consensus       227 ~~~~~~p~ilv~NK~Dl~~  245 (324)
                      ....+ +-=++++|.|-..
T Consensus       146 ~~~~~-~~~~I~TKlDe~~  163 (207)
T d1ls1a2         146 DEKVG-VTGLVLTKLDGDA  163 (207)
T ss_dssp             HHHTC-CCEEEEECGGGCS
T ss_pred             HhhCC-CCeeEEeecCccc
Confidence            12223 2358999999654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.95  E-value=6.4e-09  Score=86.95  Aligned_cols=109  Identities=18%  Similarity=0.260  Sum_probs=75.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccc------------------------cccccccc---
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------------TLPFAANI---  118 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~------------------------~~~~~~~~---  118 (324)
                      ..++..++|+|++|||||||++.|.+...+..+.+.+.+.+..-.                        ..+...++   
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~  107 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP  107 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHH
Confidence            457888999999999999999999998888777776655543211                        00000000   


Q ss_pred             ---------chhc-HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          119 ---------DIRD-TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       119 ---------~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                               .... ...+.++++.+++..... -.....+|.|++|++.++++...+++++|.|.|-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPT  173 (230)
T d1l2ta_         108 LIFKYRGAMSGEERRKRALECLKMAELEERFA-NHKPNQLSGGQQQRVAIARALANNPPIILADQPT  173 (230)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGT-TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHhhchhhhhh-cCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCc
Confidence                     0001 124556778888864311 1223469999999999999999999999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=1.7e-09  Score=91.25  Aligned_cols=108  Identities=14%  Similarity=0.104  Sum_probs=77.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc---------ccccccc----chhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------LPFAANI----DIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~----~~~~~---------  123 (324)
                      ...+..++|+|++|||||||++.|++...+..+.+.+.+.+..-..         .|....+    .+.+.         
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~  104 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA  104 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC
Confidence            3567889999999999999999999999998888888776542211         1111111    11111         


Q ss_pred             -------HHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ..++.+++.+++....  ......+|.|++|++.++.+...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt  161 (238)
T d1vpla_         105 SSSSEIEEMVERATEIAGLGEKI--KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT  161 (238)
T ss_dssp             CCHHHHHHHHHHHHHHHCCGGGG--GSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHH--hhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence                   1345667777775432  2334469999999999999999999999999884

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.89  E-value=5e-09  Score=86.12  Aligned_cols=107  Identities=14%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----cccc----cccchhc--------------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----LPFA----ANIDIRD--------------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~----~~~~~~~--------------  122 (324)
                      .+++..++|+|++|||||||++.|++...+..+.+.+.+.+.....     .+..    ..+.+.+              
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~  103 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN  103 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccC
Confidence            3467789999999999999999999999888887777654432110     0000    0011111              


Q ss_pred             HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      .-.+.+.++.+++..   .-.....+|.|++|++.++.+...+++++|+|.|-
T Consensus       104 ~~~~~~~l~~~~~~~---~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_         104 KNEIMDALESVEVLD---LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             HHHHHHHHHHTTCCC---TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             HHHHHHHHHHcCCcc---cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            112345566666533   11234469999999999999999999999999884

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.88  E-value=8.3e-09  Score=87.07  Aligned_cols=108  Identities=13%  Similarity=0.175  Sum_probs=72.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------ccccccc----chhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------LPFAANI----DIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------~~~~~~~----~~~~--------  122 (324)
                      ..++..++|+|++|||||||++.|++...+..+.+.+.+.+.....           .+....+    .+.+        
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~  108 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN  108 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHh
Confidence            4578889999999999999999999999888888888776543211           1111110    0000        


Q ss_pred             -------HHHHHHHHHHc-CCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -------TIRYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -------~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                             ......++..+ ++.....  .....+|.|++|++.++++...+++++|+|.|-
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt  167 (240)
T d1ji0a_         109 RKDKEGIKRDLEWIFSLFPRLKERLK--QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS  167 (240)
T ss_dssp             CCCSSHHHHHHHHHHHHCHHHHTTTT--SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred             cCCHHHHHHHHHHHHHHhhChHHHHh--CchhhCCHHHHHHHHHHHHHHhCCCEeeecCCC
Confidence                   11223344443 2322222  222359999999999999999999999999884

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=5e-08  Score=84.99  Aligned_cols=77  Identities=13%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             CCCEEEEeCCCCcchhhhh---h----hHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549          165 HLDYVLVDTPGQIEIFTWS---A----SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~---~----~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  237 (324)
                      ...+.|+||||........   .    .......++ ....++++++.++...+.... .   ...++.+.....++++|
T Consensus       124 ~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~-~~~~~~il~v~~a~~~~~~~~-~---~~~~~~~~~~~~r~i~V  198 (299)
T d2akab1         124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSD-A---LKIAKEVDPQGQRTIGV  198 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH-TSTTEEEEEEEESSSCGGGCH-H---HHHHHHHCTTCSSEEEE
T ss_pred             CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHh-cCccceeeeecccccchhhhH-H---HHHHHHhCcCCCceeeE
Confidence            4578999999976531111   1    111222222 223357777777765544332 1   22234556667899999


Q ss_pred             eeccccCCh
Q 020549          238 FNKTDVAQH  246 (324)
Q Consensus       238 ~NK~Dl~~~  246 (324)
                      +||+|....
T Consensus       199 ltk~D~~~~  207 (299)
T d2akab1         199 ITKLDLMDE  207 (299)
T ss_dssp             EECGGGSCT
T ss_pred             Eeccccccc
Confidence            999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.85  E-value=2.4e-08  Score=84.99  Aligned_cols=108  Identities=13%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc-----------cccccc----cchhc--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------LPFAAN----IDIRD--------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~-----------~~~~~~----~~~~~--------  122 (324)
                      .+++..++|+|++|||||||++.|++...+..+.+.+.+.+.....           .+....    ..+.+        
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~  106 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC  106 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhh
Confidence            4578889999999999999999999999888888887766542111           111110    00010        


Q ss_pred             ---------------------HHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 ---------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ---------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                                           .....++++.+++.....  .....+|.|++|++.++++...+++++|+|.|-
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt  178 (254)
T d1g6ha_         107 PGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD--RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI  178 (254)
T ss_dssp             TTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT--SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred             ccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhcc--CchhhCCcHHHHHHHHHHHHHhCcCchhhcCCc
Confidence                                 113445666777654322  234469999999999999999999999999885

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.79  E-value=4.8e-08  Score=85.46  Aligned_cols=77  Identities=12%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             CCCEEEEeCCCCcchhhhhh-------hHHHHHHHHhccCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEE
Q 020549          165 HLDYVLVDTPGQIEIFTWSA-------SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA  237 (324)
Q Consensus       165 ~~~~~liDtpG~~~~~~~~~-------~~~~~~~~~~~~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv  237 (324)
                      ...+.|+||||+........       ....+..++... ..++++++++...+.....    ...+..+......+++|
T Consensus       130 ~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~-~~~il~v~~~~~~~~~~~~----~~~~~~~~~~~~r~i~V  204 (306)
T d1jwyb_         130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQ-NAIIVAVTPANTDLANSDA----LQLAKEVDPEGKRTIGV  204 (306)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHST-TEEEEEEEESSSCSTTCSH----HHHHHHHCSSCSSEEEE
T ss_pred             CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCC-CceeEEeecccccccccHH----HHHHHHhCcCCCeEEEE
Confidence            45788999999865421110       112222333322 2356666776655544331    22234455566789999


Q ss_pred             eeccccCCh
Q 020549          238 FNKTDVAQH  246 (324)
Q Consensus       238 ~NK~Dl~~~  246 (324)
                      +||+|....
T Consensus       205 itk~D~~~~  213 (306)
T d1jwyb_         205 ITKLDLMDK  213 (306)
T ss_dssp             EECTTSSCS
T ss_pred             Eeccccccc
Confidence            999999765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.7e-08  Score=85.12  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=69.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcH---------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDT---------  123 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~---------  123 (324)
                      -.++.+|+|+|++|||||||++.|.+...+..+.+.+.+.+.....          .+..+.+   .+++.         
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~  105 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMS  105 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCcccc
Confidence            3567889999999999999999999998887777777655432110          0100000   01111         


Q ss_pred             -HHHHHHHHHcCC------CCCC---cccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          124 -IRYKEVMKQFNL------GPNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       124 -~~~~~~~~~~~l------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       ..+..+++..++      .+.+   -+-..-..+|.|++|++.++++...+++++|+|.|-
T Consensus       106 ~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpt  167 (241)
T d2pmka1         106 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT  167 (241)
T ss_dssp             HHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCc
Confidence             112222222221      1111   111122359999999999999999999999999985

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=8.7e-09  Score=89.03  Aligned_cols=110  Identities=23%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEecc------CCcccccccccccch---hcHHHHHHHHHHcCC-
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL------DPAVMTLPFAANIDI---RDTIRYKEVMKQFNL-  135 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~------d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l-  135 (324)
                      ..++.+++|+|++|||||||++.|++...+..+.+.+.+.      ++.+...+...++..   .....+..+++...+ 
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~  138 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQ  138 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCH
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHhH
Confidence            4678899999999999999999999988777655544332      221111110111110   011122333332221 


Q ss_pred             ------CC--CCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          136 ------GP--NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       136 ------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                            ..  +.-+-.....+|.|++|++.++++...+++++|+|.|-
T Consensus       139 ~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPt  186 (281)
T d1r0wa_         139 QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF  186 (281)
T ss_dssp             HHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred             HHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcc
Confidence                  11  10011111248999999999999999999999999885

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.76  E-value=1.1e-08  Score=87.13  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc------------------------------ccc-
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT------------------------------LPF-  114 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~------------------------------~~~-  114 (324)
                      .+++.+++|+|++|||||||++.|.+...+..+.+.+.+.+.....                              ++. 
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~  104 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM  104 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccch
Confidence            4678899999999999999999999988887777776555432100                              000 


Q ss_pred             --ccccc--------h---hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          115 --AANID--------I---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       115 --~~~~~--------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                        ..++.        .   ....++.++++.+++.+..- -.....+|.|++|++.++++...+++++|.|.|-
T Consensus       105 tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT  177 (258)
T d1b0ua_         105 TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ-GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT  177 (258)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH-TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred             hcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-ccCcccccHHHHHHHHHHHHHhcCCCEEEecccc
Confidence              00000        0   01124567788888865321 1112469999999999999999999999999884

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.73  E-value=2.1e-08  Score=85.23  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---ch-----------h
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DI-----------R  121 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~-----------~  121 (324)
                      -.++.+++|+|++|||||||++.|++...+..+.+.+.+.+.....          .+..+.+   .+           .
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~  117 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY  117 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccC
Confidence            4567889999999999999999999998888777777665432111          0000000   00           0


Q ss_pred             cHHHHHHHHHHcCC---------CCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 020549          122 DTIRYKEVMKQFNL---------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ  176 (324)
Q Consensus       122 ~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~  176 (324)
                      ....+.++++..++         +.+.-+-..-..+|.|++|++.++++...+++++|+|.|--
T Consensus       118 ~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts  181 (253)
T d3b60a1         118 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS  181 (253)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTS
T ss_pred             CHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence            11122223322221         11111111123599999999999999999999999999863

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.3e-08  Score=86.52  Aligned_cols=110  Identities=13%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhcHH--------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRDTI--------  124 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~~~--------  124 (324)
                      -.++.+++|+|++|||||||++.|.+...+..+.+.+.+.+..-.+          .+..+.+   .+++.+        
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~  116 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP  116 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhcccc
Confidence            4578899999999999999999999998887777776655432110          0000000   011111        


Q ss_pred             ---HH---------HHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          125 ---RY---------KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       125 ---~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                         ..         .+.++.+..+...-+-..-..+|.|++|++.++++...+++++|+|.|-
T Consensus       117 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpT  179 (251)
T d1jj7a_         117 TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDAT  179 (251)
T ss_dssp             CHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcC
Confidence               11         1122222111111111122359999999999999999999999999885

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.71  E-value=5.1e-08  Score=82.21  Aligned_cols=110  Identities=14%  Similarity=0.076  Sum_probs=70.2

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~----------  122 (324)
                      -.++.+++|+|++|||||||++.|.+...+..+.+.+.+.+.....          .+..+.+   .+++          
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~  104 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDY  104 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheeccccccc
Confidence            4567899999999999999999999998888777777665432110          0110000   0111          


Q ss_pred             -HHHHHHHHHHcCCCCC-----Ccccc----cccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 -TIRYKEVMKQFNLGPN-----GGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 -~~~~~~~~~~~~l~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                       .......++..++...     .+...    .-..+|.|++|++.++++...+++++|+|.|-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpt  167 (242)
T d1mv5a_         105 TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT  167 (242)
T ss_dssp             CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             chhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence             1122233333332211     11111    11249999999999999999999999999884

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=3.5e-08  Score=82.75  Aligned_cols=107  Identities=23%  Similarity=0.219  Sum_probs=71.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCccccc----------------cccccc---------ch
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL----------------PFAANI---------DI  120 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~----------------~~~~~~---------~~  120 (324)
                      .+++..++|+|++|||||||++.|++.. +..+.+.+.+.+......                ++...+         +.
T Consensus        22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  100 (231)
T d1l7vc_          22 VRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK  100 (231)
T ss_dssp             EETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchh
Confidence            4578889999999999999999999965 455666665554321110                111000         00


Q ss_pred             hcHHHHHHHHHHcCCCCCCcccccccccChHHHHHHHHHHHHhC-------CCCEEEEeCCC
Q 020549          121 RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD-------HLDYVLVDTPG  175 (324)
Q Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~liDtpG  175 (324)
                      .....+.++++.+++....+.  ....+|.|++|++..+.+...       .++++|+|.|-
T Consensus       101 ~~~~~~~~~~~~~~l~~~~~~--~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt  160 (231)
T d1l7vc_         101 TRTELLNDVAGALALDDKLGR--STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM  160 (231)
T ss_dssp             TCHHHHHHHHHHTTCTTTTTS--BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCS
T ss_pred             hHHHHHHHHHHhcCCHhHhCc--ChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCC
Confidence            112245677778888765443  334699999999999988753       56899999884

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.65  E-value=1.2e-07  Score=80.49  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccc----------ccccccc---chhc----------
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DIRD----------  122 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~---~~~~----------  122 (324)
                      -+++.+++|+|++|||||||++.|.+...+..+.+.+.+.+..-..          .+..+.+   .+++          
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~  120 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT  120 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCC
Confidence            4577899999999999999999999998887777777655432110          0000000   0111          


Q ss_pred             HHHHHHHHHHcCCCC-----CCcccc----cccccChHHHHHHHHHHHHhCCCCEEEEeCCC
Q 020549          123 TIRYKEVMKQFNLGP-----NGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPG  175 (324)
Q Consensus       123 ~~~~~~~~~~~~l~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG  175 (324)
                      ...+.++++..++..     ..|..+    .-..+|.|++|++.++++...+++++|+|.|-
T Consensus       121 ~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpt  182 (255)
T d2hyda1         121 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT  182 (255)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            112334444444321     112211    12349999999999999999999999999885

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=1e-08  Score=88.48  Aligned_cols=30  Identities=23%  Similarity=0.543  Sum_probs=26.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      ...+.+|+|+|.||||||||+|+|.+....
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~  138 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIA  138 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceE
Confidence            346788999999999999999999987654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=3.6e-07  Score=78.49  Aligned_cols=87  Identities=26%  Similarity=0.428  Sum_probs=65.4

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      ..+|+|++|+|++.++......   +.  ..+  .++|+|+|+||+|+++.+....|.+.+.                  
T Consensus        14 ~~~DvIl~V~DaR~P~ss~~~~---l~--~~~--~~Kp~IlVlNK~DLv~~~~~~~w~~~f~------------------   68 (273)
T d1puja_          14 KLIDIVYELVDARIPMSSRNPM---IE--DIL--KNKPRIMLLNKADKADAAVTQQWKEHFE------------------   68 (273)
T ss_dssp             GGCSEEEEEEETTSTTTTSCHH---HH--HHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH------------------
T ss_pred             HhCCEEEEEEECCCCCCCCCHH---HH--HHH--cCCCeEEEEECccCCchHHHHHHHHHHH------------------
Confidence            3479999999999877655422   11  222  3789999999999999886666665543                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVEESAQEFM  316 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~~~~~~~~  316 (324)
                               ..+..++++||+++.|+..+...+.+.+.+..
T Consensus        69 ---------~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~  100 (273)
T d1puja_          69 ---------NQGIRSLSINSVNGQGLNQIVPASKEILQEKF  100 (273)
T ss_dssp             ---------TTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred             ---------hcCCccceeecccCCCccccchhhhhhhhhhh
Confidence                     13467899999999999999988888776543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=5.3e-07  Score=74.54  Aligned_cols=86  Identities=20%  Similarity=0.163  Sum_probs=57.9

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      +..|.+++|+.+........++...+   -.....++|.+||+||+||.+.+....+.....                  
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~L---v~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~------------------   67 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFL---VLAEKNELETVMVINKMDLYDEDDLRKVRELEE------------------   67 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHH---HHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH------------------
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHH---HHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhc------------------
Confidence            44588888887765433333332222   334567899999999999998764433322221                  


Q ss_pred             HHHHhHHHHhccCceeeeccccCCChHHHHHHHH
Q 020549          276 SLSLALDEFYKNLKSVGVSSVSGAGIEAYFKAVE  309 (324)
Q Consensus       276 ~~~~~~~~~~~~~~iv~vSA~~g~gv~~l~~~i~  309 (324)
                             .+....+++.+||+++.|+++|...|.
T Consensus        68 -------~~~~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          68 -------IYSGLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             -------HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             -------ccccceeEEEeccccchhHhhHHHHhc
Confidence                   223357899999999999999988763

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=1.1e-07  Score=78.65  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++...+++|++|||||||+|+|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            35678999999999999999998763

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.34  E-value=4.1e-06  Score=66.27  Aligned_cols=30  Identities=37%  Similarity=0.501  Sum_probs=25.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      +|+|+|++|+|||||++.+++......+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~   31 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF   31 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceE
Confidence            699999999999999999999766544333

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=1.5e-07  Score=78.21  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++...+++|++|||||||+|+|.+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            35668899999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=1.4e-06  Score=72.10  Aligned_cols=86  Identities=8%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             cCCcEEEEEEcCCCCCCchhHHHhHHHHHHHHhhcCCCeEEEeeccccCChHhHHHHHHhHHHHHHHHhcCccchhhHHH
Q 020549          196 TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMQDFEVFQAAISSDHSYTSTLTN  275 (324)
Q Consensus       196 ~~~d~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~  275 (324)
                      +..|.+++|+.+.+......++...+   -.....+++.+||+||+||.+.....++...+..                 
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~L---v~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-----------------   68 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE-----------------   68 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHH---HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHH-----------------
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHH---HHHHHcCCCEEEEEecccccccHHHHHHHHHHHH-----------------
Confidence            44688888888765433333333222   3455678999999999999987544333333221                 


Q ss_pred             HHHHhHHHHh-ccCceeeeccccCCChHHHHHHH
Q 020549          276 SLSLALDEFY-KNLKSVGVSSVSGAGIEAYFKAV  308 (324)
Q Consensus       276 ~~~~~~~~~~-~~~~iv~vSA~~g~gv~~l~~~i  308 (324)
                             .|. -+.+++.+||+++.|+++|...|
T Consensus        69 -------~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          69 -------DYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             -------HHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             -------HHhhccccceeeecCChhHHHHHHHhh
Confidence                   111 25799999999999999987655

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.04  E-value=5.3e-06  Score=68.72  Aligned_cols=160  Identities=19%  Similarity=0.273  Sum_probs=80.9

Q ss_pred             CcEEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCC------CCCcc
Q 020549           69 PVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLG------PNGGI  141 (324)
Q Consensus        69 ~~~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~  141 (324)
                      +.+|+|. +..|+||||+.-.|.......++.+.++..|+.....+.......+.............+.      ...+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   81 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNV   81 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhHHhCCCCcccchhhhccCCCcHHHhhhccccccc
Confidence            4568888 6799999999999988776677788887766432221111110000000000000000000      00000


Q ss_pred             cc---------cccccChHHHHHHHHHHHHhCCCCEEEEeCCCCcchhhhhhhHHHHHHHHhccCCcEEEEEEcCCCCCC
Q 020549          142 LT---------SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN  212 (324)
Q Consensus       142 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~iv~vvD~~~~~~  212 (324)
                      ..         ....-...+.   ..+......++++|+|+|+....        .....+  ..+|.+++++....   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~d~IiiD~~~~~~~--------~~~~~l--~~aD~viiv~~~~~---  145 (237)
T d1g3qa_          82 YVLPGAVDWEHVLKADPRKLP---EVIKSLKDKFDFILIDCPAGLQL--------DAMSAM--LSGEEALLVTNPEI---  145 (237)
T ss_dssp             EEECCCCSHHHHHHCCGGGHH---HHHHTTGGGCSEEEEECCSSSSH--------HHHHHH--TTCSEEEEEECSCH---
T ss_pred             cccccccchhhhhhhhhHHHH---HHHHHHHhcCCEEEEcccccccc--------cchhhh--hhhhcccccccccc---
Confidence            00         0000011122   22333345789999999985432        111122  23689999887632   


Q ss_pred             chhHHHhHHHHHHHHhhcCCCeE-EEeeccccCCh
Q 020549          213 PMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQH  246 (324)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~  246 (324)
                        .........+..+.+.+.|++ +|+||.+....
T Consensus       146 --~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         146 --SCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             --HHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTT
T ss_pred             --eecchhhHHHHHHhhhhhhhhhhhhcccccccc
Confidence              112222333345566788876 89999987654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.5e-06  Score=66.80  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      +.++|+|++|||||||+++|+......+..+.++..+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            579999999999999999999887777777777666553

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=4e-06  Score=68.18  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      |..|+++|.||+|||||.++|.......+..+.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~   35 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE   35 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeE
Confidence            4679999999999999999999765444444433

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.79  E-value=0.00011  Score=60.34  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             EEEEE-ccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        71 ~v~ii-G~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      .|+|+ |..|+||||+.-.|.......+.++.++..|+..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46676 7899999999998887766667788888777644

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=1e-05  Score=63.41  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCC
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP  107 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~  107 (324)
                      .++|+|++|||||||+++|+......+..+.++-.+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            5789999999999999999998877777777765554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=3.7e-05  Score=61.32  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      ..+..|+|.|++|||||||.++|.......+.....
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~   55 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccccccee
Confidence            356789999999999999999998765444433333

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.5e-05  Score=65.00  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=22.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      -..|+|+|+.++|||+|+|.|++..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4579999999999999999999865

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.44  E-value=0.0014  Score=54.78  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=34.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      .+|+|.|..|+||||+.-.|.......++++.++..|+.-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            4689999999999999999988877778899999988753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.00047  Score=54.11  Aligned_cols=27  Identities=30%  Similarity=0.732  Sum_probs=23.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ...+..|+++|.|||||||+.++|...
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            356778999999999999999999654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.42  E-value=3.2e-05  Score=60.86  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ...+|+|+|++|+|||||+++|....
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.37  E-value=5.1e-05  Score=60.81  Aligned_cols=28  Identities=39%  Similarity=0.543  Sum_probs=24.3

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+|..|+|+|+|||||||+.++|+...
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467789999999999999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.31  E-value=6.5e-05  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=23.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++.+|+|+|+|||||||+.+.|....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.29  E-value=4.9e-05  Score=59.16  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++|+|+|+|||||||+.++|...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.23  E-value=9.4e-05  Score=57.78  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++..|.|+|.|||||||+.++|....
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578889999999999999999998764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.20  E-value=9.5e-05  Score=56.42  Aligned_cols=23  Identities=35%  Similarity=0.738  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..|+|+|+||||||||+++|...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999999764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=7.8e-05  Score=58.45  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      .|.|+|+||+|||||+..++......+..+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~   34 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG   34 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            38999999999999999999887655544443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.14  E-value=0.00012  Score=58.36  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++.+|+|+|+|||||||+.+.|+...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.07  E-value=0.00021  Score=59.81  Aligned_cols=27  Identities=33%  Similarity=0.528  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .+.-|.+.|+||+|||||.++|.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            455689999999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.05  E-value=0.00013  Score=56.52  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..|+|+|+|||||||+.++|....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999999998763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.04  E-value=0.00013  Score=58.06  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|.+|+|+|+|||||||+.+.|....
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999998764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.01  E-value=0.0084  Score=50.45  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV  109 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~  109 (324)
                      .+|+|-|..|+||||+.-.|.......++++.++..||.-
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            3688899999999999988887766678889999998853

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00018  Score=56.98  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|+||+|||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4568999999999999999998764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=57.26  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |++|+|+|+|||||||..+.|+...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00024  Score=55.10  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+..++|+|+|||||||+.++|....
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            355678899999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.93  E-value=0.00024  Score=56.69  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..+|+|+|+|||||||+...|+...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999863

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.91  E-value=0.00026  Score=55.06  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=21.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|.|+|||||||+.+.|....
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999999997753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.91  E-value=0.00026  Score=55.50  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      ..|+|.|++||||||+++.|......
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999876443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00028  Score=57.21  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|+.|+|.|++|||||||.+.|....
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            37889999999999999999997653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.86  E-value=0.00026  Score=55.68  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|+|||||||+.+.|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00024  Score=54.31  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .|+|+|++||||||+.+.|....
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.85  E-value=0.0003  Score=54.55  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..|+|.|++||||||+.++|....
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            458888999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.80  E-value=0.00027  Score=54.96  Aligned_cols=24  Identities=38%  Similarity=0.527  Sum_probs=21.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++|+++|.+||||||+.+.|....
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            458899999999999999998764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00036  Score=56.46  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +..|+|+||+|||||||+++|+...
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5678999999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0002  Score=56.86  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ++..|.|+|.|||||||+.+.|.....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567889999999999999999987643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.76  E-value=0.00034  Score=55.20  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|+|||||||+.+.|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00041  Score=55.36  Aligned_cols=26  Identities=35%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +...|+|+|+|||||||+...|+...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.00038  Score=55.52  Aligned_cols=26  Identities=46%  Similarity=0.555  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ++..|.|+|+|||||||+..+|+...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.00039  Score=54.73  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|+|||||||+.+.|+...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00044  Score=54.46  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+|+|+|+|||||||+.+.|....
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998763

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00038  Score=55.30  Aligned_cols=22  Identities=32%  Similarity=0.721  Sum_probs=20.2

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |+|+||+|||||||+++|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7999999999999999998763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00042  Score=54.43  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +|+|+|+|||||||..+.|....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00083  Score=57.65  Aligned_cols=41  Identities=27%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhccc--CCcceEEEeccC
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLD  106 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~--~~~~~~~i~~~d  106 (324)
                      .+.++.|+|.|++|||||||.+.|.....  ..+..+.++..|
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            46789999999999999999999876543  223344444433

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.62  E-value=0.00052  Score=54.65  Aligned_cols=28  Identities=29%  Similarity=0.554  Sum_probs=24.9

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++..|+|-|..||||||+++.|....
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4677899999999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00061  Score=53.72  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ..|+|+||+|+|||||+++|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            34899999999999999999865

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.60  E-value=0.00068  Score=53.19  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=22.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNI   98 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~   98 (324)
                      .|+|.|.+||||||+++.|.......+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~   30 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGI   30 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            4678899999999999999877654443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00075  Score=53.48  Aligned_cols=25  Identities=40%  Similarity=0.558  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .|..|+|.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            5788999999999999999998654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.50  E-value=0.0057  Score=50.55  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=21.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +.-|.+.|+||+|||+|++++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcc
Confidence            3458999999999999999998764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.47  E-value=0.00065  Score=52.50  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=20.1

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |+|+|+|||||||+.+.|....
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.00068  Score=53.96  Aligned_cols=22  Identities=27%  Similarity=0.662  Sum_probs=19.9

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |+|+||+|||||||+++|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998763

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.43  E-value=0.00042  Score=58.86  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d  106 (324)
                      +.+.|+|.|.+||||||+.++|.......+..+.++..|
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            456799999999999999999877654444445554444

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.41  E-value=0.039  Score=45.68  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc-cCCcceEEEe
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT-QSRNIRGYVM  103 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~-~~~~~~~~i~  103 (324)
                      .++-.++|.|+||+|||||+..+.... ...+..+.++
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~   70 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA   70 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEe
Confidence            456679999999999999998887653 3334444443

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.00093  Score=53.93  Aligned_cols=25  Identities=24%  Similarity=0.378  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+.|+|.|||||||||+...|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998874

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.028  Score=44.48  Aligned_cols=37  Identities=19%  Similarity=0.080  Sum_probs=30.8

Q ss_pred             cEEEEEccC-CCcHHHHHHHHHhcccCCcceEEEeccC
Q 020549           70 VIIIVVGMA-GSGKTTFMHRLVCHTQSRNIRGYVMNLD  106 (324)
Q Consensus        70 ~~v~iiG~~-gaGKSTLl~~l~~~~~~~~~~~~i~~~d  106 (324)
                      .++.|.|.. ||||||+.-.|.......++++.++.-|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            468899985 9999999999999888888888876544

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.31  E-value=0.0014  Score=56.68  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=26.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      .|+|+|++|+|||||+++|+....+..+.+++
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            48999999999999999999887665554444

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.30  E-value=0.00096  Score=51.87  Aligned_cols=22  Identities=36%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |+++|++||||||+.+.|+...
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7789999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.27  E-value=0.0012  Score=53.51  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+|+|-|||||||||+...|+...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999999999874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.22  E-value=0.0014  Score=52.92  Aligned_cols=28  Identities=25%  Similarity=0.430  Sum_probs=24.8

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..++..|.+.|.||||||||.+.|....
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.21  E-value=0.041  Score=44.37  Aligned_cols=33  Identities=33%  Similarity=0.532  Sum_probs=26.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      ++..+.|.|+||+|||+|+..++......+..+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~   57 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERA   57 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcccc
Confidence            566799999999999999999988755444433

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.18  E-value=0.032  Score=46.41  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCcccccccccccchhcHHHHHHHHHHcCCCCCCcccccccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL  147 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (324)
                      .+..+-+.|++++|||+|+-.++......++.+..+.-..++         +       .+.++.+|+.+..-++.... 
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~---------~-------~~~a~~~Gvd~d~i~~~~~~-  118 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL---------D-------PVYARALGVNTDELLVSQPD-  118 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---------C-------HHHHHHTTCCGGGCEEECCS-
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC---------C-------HHHHHHhCCCchhEEEEcCC-
Confidence            456799999999999999988887655544433332221111         1       13456677766533322211 


Q ss_pred             cChHHHHHHHHHHHH--hCCCCEEEEeCCCC
Q 020549          148 FTTKFDEVISLIERR--ADHLDYVLVDTPGQ  176 (324)
Q Consensus       148 ~~~~~~~~~~~~~~~--~~~~~~~liDtpG~  176 (324)
                         ...+.++++...  .....+++||.-+.
T Consensus       119 ---~~E~~~~~~~~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         119 ---NGEQALEIMELLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             ---SHHHHHHHHHHHHTTTCCSEEEEECTTT
T ss_pred             ---CHHHHHHHHHHHHhcCCCcEEEEecccc
Confidence               122222222222  33577888887764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0018  Score=52.28  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY  101 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~  101 (324)
                      +++..|+|-|..||||||+++.|.......+..+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~   35 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE   35 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            35678999999999999999999877655554443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0064  Score=50.54  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+.-+.+.|+||+|||+++++++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            34558999999999999999999764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.05  E-value=0.0036  Score=51.68  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=23.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      .+..+.|.|+||+||||+++.+......
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            4556999999999999999999987644

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.99  E-value=0.0018  Score=53.03  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ...+.+.||||+||||+++.+++...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            34588999999999999999998654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.98  E-value=0.0053  Score=49.53  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=21.8

Q ss_pred             EEEEccCCCcHHHHHHHHHhcccCC
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQSR   96 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~~~   96 (324)
                      +.|.|++|+|||-|+++++......
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~   63 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKR   63 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccC
Confidence            7899999999999999998875543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0024  Score=54.07  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=23.1

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++++.|+|.|.+|||||||...|...
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999887654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0074  Score=50.43  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      -.++++|+||+|||+++..|....
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0023  Score=51.45  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=24.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~   97 (324)
                      ++..|+|-|..||||||+++.|.......+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g   30 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLG   30 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            356799999999999999999987654443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.74  E-value=0.0026  Score=52.01  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      ..+.+.||||+||||+.+.|+.....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC
Confidence            34889999999999999999887543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0037  Score=51.43  Aligned_cols=27  Identities=26%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ....+.+.||||+||||++.++++...
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            334689999999999999999998754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.022  Score=47.34  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=26.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEE
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY  101 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~  101 (324)
                      .+..+-|.|+||+|||||+-.++......+..+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~v   86 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA   86 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEE
Confidence            4567999999999999999888776555554443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.004  Score=49.85  Aligned_cols=24  Identities=33%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .+.|||+|..||||||+++.|...
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999999988643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.0037  Score=49.77  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      .|+|-|..||||||+++.|.......+..+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~   33 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence            58999999999999999998765544444433

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.53  E-value=0.0049  Score=47.19  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=24.4

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +++..|.+-|+-|||||||++.|+....
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3567899999999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.49  E-value=0.0031  Score=52.39  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +.+.|+||+||||+++++....
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4566999999999999998764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.46  E-value=0.0045  Score=50.31  Aligned_cols=25  Identities=28%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.+.|+||+||||+++.|+....
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            3489999999999999999987654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0044  Score=49.75  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .+.|+|+|.+||||||+++.|...
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHC
Confidence            367999999999999999988654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.33  E-value=0.0043  Score=53.16  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +.-|.++||||+|||.|.++|++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc
Confidence            34578999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0064  Score=48.23  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=20.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      -.++++|+||+|||+++..|....
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHH
Confidence            348999999999999999998764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.08  E-value=0.035  Score=46.21  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=25.3

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG  100 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~  100 (324)
                      ..+..+-+.|++|+|||||+-.++......+..+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~   91 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVA   91 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEE
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEE
Confidence            3466799999999999999877766544444443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.07  E-value=0.006  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..|+|.|++|+|||||+++++...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHC
Confidence            358899999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.045  Score=43.51  Aligned_cols=27  Identities=11%  Similarity=0.215  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      +.-+.+.|++|+||||++..++.....
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            444899999999999999999887554

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.0014  Score=51.63  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+|+|++|||||||+.+|.-..
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999997543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.0065  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+.+.|++|+||||+++.++...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            37899999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.0083  Score=48.41  Aligned_cols=24  Identities=42%  Similarity=0.558  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHhccc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .+.+.|++|+||||+++.|+....
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHh
Confidence            378999999999999999887643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.92  E-value=0.0089  Score=48.24  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHhccc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      .+.+.|++|+||||++..|+....
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            378999999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.005  Score=50.05  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ...|+|-|..||||||+++.|....
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.81  E-value=0.009  Score=49.33  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      +.-|.+.|+||+|||+|++++.+..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc
Confidence            3458999999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.75  E-value=0.026  Score=48.21  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=19.6

Q ss_pred             EEEEccCCCcHHHHHHHHHhccc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +.+.|+||+|||.|.++|.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhc
Confidence            45579999999999999998743

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.0081  Score=49.16  Aligned_cols=25  Identities=24%  Similarity=0.269  Sum_probs=21.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.+.|++|+||||++.+++....
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhc
Confidence            3488999999999999999988643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.59  E-value=0.015  Score=51.44  Aligned_cols=36  Identities=31%  Similarity=0.281  Sum_probs=27.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      .....|.|.|++|+||||++.+++.......+.+..
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~t  191 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILT  191 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEE
Confidence            345669999999999999999999876544444433

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.58  E-value=0.0058  Score=51.71  Aligned_cols=20  Identities=30%  Similarity=0.619  Sum_probs=18.2

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 020549           71 IIIVVGMAGSGKTTFMHRLV   90 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~   90 (324)
                      .-+|+|++|+||||++.+|.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            57999999999999999884

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.011  Score=46.71  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .++..+.|.|+||+|||+|+..|+...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356679999999999999999988654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.49  E-value=0.012  Score=48.84  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +.-|.+.|+||+|||+|+++++....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC
Confidence            34589999999999999999998643

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.012  Score=47.78  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      |..|+|=|.-||||||+++.|......
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            567999999999999999999876443

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.024  Score=40.90  Aligned_cols=38  Identities=5%  Similarity=-0.013  Sum_probs=29.5

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhcccC--CcceEEEe
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVM  103 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~~--~~~~~~i~  103 (324)
                      .++++.|.+.|.+|+|||||.++|......  -++.+++.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll   42 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIF   42 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEEC
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence            468899999999999999999999765433  24555554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.08  E-value=0.016  Score=46.56  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +|..|+|-|.-||||||+++.|.....
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            577899999999999999999987643

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.02  Score=47.77  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=34.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ..+..|.+.|..|+||||+.-.|.......++++.++..||.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            456778899999999999998888877777788888888863

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.04  E-value=0.021  Score=47.75  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=21.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ...|+|.|.+|.|||||...+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.021  Score=47.43  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcccCCcceEEEeccCCc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA  108 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~~d~~  108 (324)
                      ....|++.|..|+||||+.-.|.......++++.++..|+.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            44567778999999999988887776667788888888874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.79  E-value=0.018  Score=47.96  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +.-|.+.|+||+|||+|++++++...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            44589999999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.017  Score=46.61  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      ++..+.|.|+||+|||||+..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5667999999999999999988754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.74  E-value=0.018  Score=44.79  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+.-|.+.|++|+|||||.-.|....
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34558999999999999999988753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.018  Score=50.63  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHH
Q 020549           70 VIIIVVGMAGSGKTTFMHRLV   90 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~   90 (324)
                      ..-+|+|++|+||||++.+|.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999984

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.67  E-value=0.02  Score=49.87  Aligned_cols=27  Identities=30%  Similarity=0.237  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      +...+++.||||+|||+|.++|++...
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            334699999999999999999988754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.43  E-value=0.021  Score=44.37  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+.-|.+.|++|+|||||...|....
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            34558999999999999999998653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.30  E-value=0.024  Score=45.95  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .+|+|.|..||||||+.+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.26  E-value=0.025  Score=45.94  Aligned_cols=27  Identities=37%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      ..+..+.|.|+||+|||||.-.++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356679999999999999999887553

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.06  E-value=0.026  Score=43.50  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+.-|.+.|++|+||||+.-.|+...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            45569999999999999998888763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.82  E-value=0.022  Score=50.02  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=18.1

Q ss_pred             EEEEccCCCcHHHHHHHHHhc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +++||+||||||+++..|...
T Consensus        46 ~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHH
Confidence            689999999999999777654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.79  E-value=0.042  Score=44.08  Aligned_cols=30  Identities=30%  Similarity=0.441  Sum_probs=24.7

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~~   96 (324)
                      ..+..+.|.|+||+|||+|+..++......
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~   61 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNP   61 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            356789999999999999999998765443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.76  E-value=0.016  Score=49.81  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      -|.++|+||+|||+|+++|..-.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            48999999999999999998643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.04  Score=46.93  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=21.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.++||+|+|||.|.+.|.....
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc
Confidence            3688999999999999999987643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.61  E-value=0.042  Score=47.10  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcccCCcceEEEec
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN  104 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i~~  104 (324)
                      .+|+|=|.-||||||+++.|.......+..+.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            56999999999999999999987666555554443

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.44  Score=38.26  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=19.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHh
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      ...++|.|++.+||||+++.+.-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            34589999999999999998743

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.49  E-value=0.035  Score=44.32  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..+.|.|+||+|||+|+..++..
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            36677999999999999999776543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.045  Score=44.24  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.6

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++..+.|.|+||+|||+|.-.++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45668999999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.13  E-value=0.035  Score=49.64  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      -.|.++||+|||||-|.++|.+..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            359999999999999999998754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.043  Score=48.51  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=25.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCCcceEEE
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV  102 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~~~~~~i  102 (324)
                      ...+.|+|.+|+|||++++.++......+..+.+
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ii   83 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVI   83 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            3458999999999999998887765554444333

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.75  E-value=0.034  Score=43.99  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      --+++.|++++|||+++++|++..
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHHh
Confidence            458999999999999999998874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.14  E-value=0.062  Score=44.95  Aligned_cols=29  Identities=14%  Similarity=0.172  Sum_probs=24.7

Q ss_pred             cCCCcEEEEEccCCCcHHHHHHHHHhccc
Q 020549           66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        66 ~~~~~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      --++-+++|+|++|+|||+|+..++....
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            34678899999999999999999987543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.066  Score=44.02  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      +..+.|.|++|+|||||+-.|+-.
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            557889999999999999887653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.22  E-value=0.14  Score=43.82  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=23.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcccCC
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHTQSR   96 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~~~~   96 (324)
                      ..+|+|=|.-|+||||+++.|.......
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccC
Confidence            4679999999999999999998875443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.11  Score=41.93  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhccc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHTQ   94 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~~   94 (324)
                      ..+.+.|++|+||||+++.++....
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3478899999999999999887644

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.45  E-value=0.15  Score=43.10  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHhcccCCc
Q 020549           71 IIIVVGMAGSGKTTFMHRLVCHTQSRN   97 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~~~~~~~   97 (324)
                      .+.++|++|+|||.|.+.|....+...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~   81 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTE   81 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCC
Confidence            578889999999999999998765443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.10  E-value=0.12  Score=44.88  Aligned_cols=25  Identities=36%  Similarity=0.550  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           68 KPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        68 ~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .+..+.++||+|||||-|.++|...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhh
Confidence            3455899999999999999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.97  E-value=0.11  Score=44.87  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=18.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHH
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLV   90 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~   90 (324)
                      ...++|.|+||+||||++..++
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            4579999999999999886544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.79  E-value=0.11  Score=42.90  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHhcc
Q 020549           69 PVIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        69 ~~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .-.+.+.|+++.|||+|++.|....
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3458999999999999999998764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.45  E-value=0.081  Score=44.01  Aligned_cols=15  Identities=47%  Similarity=0.663  Sum_probs=13.0

Q ss_pred             EEEEccCCCcHHHHH
Q 020549           72 IIVVGMAGSGKTTFM   86 (324)
Q Consensus        72 v~iiG~~gaGKSTLl   86 (324)
                      +.|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.97  E-value=0.11  Score=44.22  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHhcc
Q 020549           70 VIIIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        70 ~~v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      .+|+|=|.-|+||||+++.|....
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            469999999999999999997653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.94  E-value=0.23  Score=41.09  Aligned_cols=26  Identities=35%  Similarity=0.392  Sum_probs=22.8

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      -++-+++|+|.+|+|||+|+..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            35778999999999999999888765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=87.81  E-value=0.11  Score=43.67  Aligned_cols=15  Identities=40%  Similarity=0.744  Sum_probs=13.1

Q ss_pred             EEEEccCCCcHHHHH
Q 020549           72 IIVVGMAGSGKTTFM   86 (324)
Q Consensus        72 v~iiG~~gaGKSTLl   86 (324)
                      +.|.|.||+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            778899999999765

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.64  E-value=0.2  Score=40.19  Aligned_cols=21  Identities=24%  Similarity=0.577  Sum_probs=18.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHh
Q 020549           71 IIIVVGMAGSGKTTFMHRLVC   91 (324)
Q Consensus        71 ~v~iiG~~gaGKSTLl~~l~~   91 (324)
                      .++|.|++.+||||+++.+.-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            589999999999999998643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.60  E-value=0.48  Score=38.30  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHhcc
Q 020549           72 IIVVGMAGSGKTTFMHRLVCHT   93 (324)
Q Consensus        72 v~iiG~~gaGKSTLl~~l~~~~   93 (324)
                      |.|.|++|+||+++.+.|-...
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7999999999999999986543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.04  E-value=0.33  Score=34.65  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=18.8

Q ss_pred             CCCcEEEEEccCCCcHHHHH-HHHHhcc
Q 020549           67 RKPVIIIVVGMAGSGKTTFM-HRLVCHT   93 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl-~~l~~~~   93 (324)
                      +++..++|.+++|+|||..+ ..+....
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            45677888899999999443 4444443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.81  E-value=0.37  Score=40.00  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhc
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCH   92 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~   92 (324)
                      .++-+++|+|.+|+|||+|+..++..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            45778999999999999998877654

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.57  E-value=0.55  Score=38.68  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CCCcEEEEEccCCCcHHHHHHHHHhcccC
Q 020549           67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS   95 (324)
Q Consensus        67 ~~~~~v~iiG~~gaGKSTLl~~l~~~~~~   95 (324)
                      .++-+++|+|.+|+|||+|+..+......
T Consensus        65 g~GQr~~Ifg~~g~GKt~l~~~~~~~~~~   93 (276)
T d1fx0a3          65 GRGQRELIIGDRQTGKTAVATDTILNQQG   93 (276)
T ss_dssp             BTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred             cCCceEeeccCCCCChHHHHHHHHhhhcc
Confidence            46778999999999999999776554433