Citrus Sinensis ID: 020551

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEcHHHHHHHEEEc
Secondary Structure Prediction (SSPRO)
cccccHEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEEEEHccccccEHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEEcccEEEEEEEEc
Coil and Loop (DISEMBL)
mlqmqclnlapkfnplqspgcsrkfaspivtqrhkssikcssqssfsfpnqnkishnnnkppckplvplalqdghalqqseddnkpaaapSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVcflpvqslsqvtPAFLLGVLKAVVAQIFMNISLCSLNQICDVeidkinkpylplasgelsmgTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGltgaaysvplpflrwkshtfmapFTLVILMGLILQIpyfihsqtyllgkpfevtgpfvFATAIMSIYAFVNGLlkdlpdvegdkafGMQTLCVLLGKEKVSIYIILI
Flexible Loop (DISEMBL)
MLQMQCLNLapkfnplqspgcSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCvllgkekvsiYIILI
Low Complexity Region (SEG)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKssikcssqssfsFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICagsallslalaflsgsPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI
Disordered region (IsUnstruct)
*******************************************************************************************FLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIIL*
Disordered Region (DISOPRED)
*************************************************************************************************RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI
Disordered Region (DISEMBL)
MLQMQCLNLAPKFNPLQSPGCSRKFASP********************PNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI
Disordered Region (DISPRO)
***MQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCS*QSSFSFPNQNKI***********************************PSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	yes	no	0.959	0.769	0.362	2e-51
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.682	0.562	0.434	2e-51
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.691	0.547	0.392	3e-41
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.891	0.704	0.333	4e-40
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.580	0.487	0.326	3e-19
Q0D576	379	Probable homogentisate ph	no	no	0.530	0.453	0.325	2e-17
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.459	0.530	0.279	7e-07
P26170	304	Bacteriochlorophyll synth	yes	no	0.462	0.493	0.259	1e-05
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.422	0.487	0.271	1e-05
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.444	0.476	0.298	2e-05

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 186/328 (56%), Gaps = 17/328 (5%)

Query: 4   MQCLNLAPKFNPLQSPGCS-----RK--FASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +     R+  F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPF 229
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+ LPF
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPF 237

Query: 230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
           LRWK    +A   ++ +  +I+Q+ +F+H QT++  +P   T P +FATA M+ ++ V  
Sbjct: 238 LRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIA 297

Query: 290 LLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           L KD+PD+EGD+ FG+++  V LG++KV
Sbjct: 298 LFKDIPDIEGDRIFGIKSFSVRLGQKKV 325

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 146/221 (66%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           +  L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI + 
Sbjct: 94  RDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIV 153

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LNQ+ DVEIDK+NKPYLPLASGE S+ TGIAI A  +++S  L ++ GS  +  A+   
Sbjct: 154 GLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVS 213

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            + G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +F
Sbjct: 214 FMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIF 273

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           ATA MS ++ V  L KD+PD+EGDK FG+++  V LG+++V
Sbjct: 274 ATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  169 bits (428), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 132/224 (58%)

Query: 93  LEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMN 152
           L+ VK  L+A    +  Y  I I +   S   L V+ LS ++ +FL+GVL+ V+ Q+F+ 
Sbjct: 106 LDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIE 165

Query: 153 ISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCA 212
           I LC +NQ+ D+EIDKINKP+LP+ASG+ S  TG+ I A    LS    +++GS  ++C 
Sbjct: 166 IYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICN 225

Query: 213 VIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272
           ++    +  AYS+ +P LRWK + F+A   ++    L L I YF H QT +L +P     
Sbjct: 226 LVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPR 285

Query: 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
              F  A M+ Y+    L KD+PDVEGDK  G+ +  V LG+++
Sbjct: 286 SLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKR 329

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 157/306 (51%), Gaps = 17/306 (5%)

Query: 12  KFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLAL 71
           K   +Q   C+  F+   + Q +K              N+   + N +K   K  V  A+
Sbjct: 43  KKRKIQKEHCAAIFSKHNLKQHYKV-------------NEGGSTSNTSKECEKKYVVNAI 89

Query: 72  QDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLS 131
            +    Q  E + +     S  + V   L+      R YA   I++  T    + V+ LS
Sbjct: 90  SE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLS 145

Query: 132 QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICA 191
            ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKINKP LPLASG+LS    + I A
Sbjct: 146 DLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITA 205

Query: 192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251
            S +L L  A++  S  +   V    +  +AY+V LP LRWK +  +     +  + +  
Sbjct: 206 SSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTR 265

Query: 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVL 311
            + +F+H QT +  +P     P +F TAI+SIYA V  L KD+PD+EGD+ FG+Q+L + 
Sbjct: 266 SLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLR 325

Query: 312 LGKEKV 317
           LG ++V
Sbjct: 326 LGPKRV 331

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 5/193 (2%)

Query: 127 VQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTG 186
           +++   +  + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ + 
Sbjct: 119 IENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA 178

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVI 245
             +    A+  L +   +  P  + ++ + GL  G  YSVP P LR K     A   +  
Sbjct: 179 WLLVIFFAIAGLLVVGFNFGP-FITSLYSLGLFLGTIYSVP-P-LRMKRFPVAAFLIIAT 235

Query: 246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM 305
           + G +L    + H+    LG PF+ + P  F T+ ++++A V  + KDLPDVEGD+ F +
Sbjct: 236 VRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQI 294

Query: 306 QTLCVLLGKEKVS 318
            TL   LG   ++
Sbjct: 295 STLATKLGVRNIA 307

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL 203
            +VA I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ T   +    A    ++   
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVT 188

Query: 204 SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYL 263
           +  P +          G  YSVP PF R K +   A   +  + G +L    +  ++   
Sbjct: 189 NFGPFITSLYCLGLFLGTIYSVP-PF-RLKRYPVAAFLIIATVRGFLLNFGVYYATRA-A 245

Query: 264 LGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVS 318
           LG  F+ + P  F T  ++++A V  + KDLPDVEGD+ + + TL   LG   ++
Sbjct: 246 LGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA 300

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 23/172 (13%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           ++N   D EID INKPY P+ SG +S    + I    +L  +AL+   G    L  V A+
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLGFIEFLI-VTAF 112

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            L+  AY+      RW   T + P   ++ +G+         + T + G      G    
Sbjct: 113 SLSWYAYA------RWLKRTGV-PGNALVSLGV---------AFTLIFGS--LAAGNLTN 154

Query: 277 ATAIMSIYAFVNGLLKD----LPDVEGDKAFGMQTLCVLLGKEKVSIYIILI 324
              I S  AF + L+++    + D+ GD+A G++T+ V +G ++  I + L+
Sbjct: 155 KVIIFSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIGVKRTGILVFLL 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 159 NQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
           N  CD  +D IN+P+ P+ SG +    G+ I    +LLSL + +  GS   +  ++    
Sbjct: 72  NDWCDRHVDAINEPHRPIPSGRIPGLWGLYIAIAMSLLSLVVGWQLGSWGFVATLLG--- 128

Query: 219 TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG-PFVFA 277
             AA++  +  +R K   +  P     L+GL  +   +I     LL       G P V  
Sbjct: 129 VAAAWAYSVEPIRLKRSGWWGPG----LVGLAYEGLPWITGAAVLLATADTSPGFPIVMM 184

Query: 278 TAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKE 315
             + ++ A     + D   +EGD+  G+++L  + G E
Sbjct: 185 ATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPE 222

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 36/173 (20%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LN   D+EIDK+NKP  P+ SG++S+ + +       +  + LAFL  +P  LC +IA 
Sbjct: 61  GLNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLV-NP--LCGIIAL 117

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQT-YLLGKPFEVTGPFV 275
                                     L++    + + P+F ++   YL G  F   G  V
Sbjct: 118 ---------------------FNSMVLILYAQSLKRTPFFGNASVGYLTGSTFLFGGA-V 155

Query: 276 FATA----------IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVS 318
           F  A          + ++      ++KD+ D+ GDK  G +TL +L+G +K S
Sbjct: 156 FGMAGLQALVVLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKKAS 208

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 159 NQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
           N  CD  +D +N+P  P+ SG +    G+ I     +LSLA+ ++ G P    A +   L
Sbjct: 71  NNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG-PWGFGATVFGVL 129

Query: 219 TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ-IPYFIHSQTYLLGKPFEVTGPFVFA 277
              AYSV    +R K   +  P     L+ L  + +P+F  +     G       P  F 
Sbjct: 130 AAWAYSVEP--IRLKRSGWWGPG----LVALCYEGLPWFTGAAVLSAGA------PSFFI 177

Query: 278 TAIMSIYAF-VNGL--LKDLPDVEGDKAFGMQTLCVLLGKE 315
             +  +YAF  +G+  L D   +EGD+  G+++L V+LG E
Sbjct: 178 VTVALLYAFGAHGIMTLNDFKALEGDRQHGVRSLPVMLGPE 218

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
51949754	411	homogentisate phytylprenyltransferase [M	0.740	0.583	0.439	8e-52
81295660	400	homogentisate phytyltransferase VTE2-1 [	0.916	0.742	0.374	6e-51
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.956	0.778	0.371	6e-51
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.956	0.786	0.360	6e-51
224143266	284	predicted protein [Populus trichocarpa]	0.672	0.767	0.444	8e-51
357479603	443	Homogentisate phytyltransferase [Medicag	0.740	0.541	0.435	2e-50
297836742	393	predicted protein [Arabidopsis lyrata su	0.805	0.664	0.393	2e-50
219842170	411	homogentisate geranylgeranyl transferase	0.959	0.756	0.368	2e-50
377657555	394	homogentisate phytyltransferase [Brassic	0.682	0.560	0.438	5e-50
338810328	404	RecName: Full=Probable homogentisate phy	0.959	0.769	0.362	1e-49

>gi|51949754|gb|AAU14795.1| homogentisate phytylprenyltransferase [Medicago sativa]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 154/241 (63%), Gaps = 1/241 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           +QS +   PA  P + L+ VK  L+A    +R +  I   +S+ SV  L V+ LS ++P 
Sbjct: 92  EQSFESEHPAFDPKNILDTVKNSLDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDISPL 151

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG  I   S++L
Sbjct: 152 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSIL 211

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256
           S  LA++ GS  +  A+    + G AYS+ +P LRWK    +A   ++ +  +I+Q+ +F
Sbjct: 212 SFWLAWIVGSWPLFWALFISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRAVIVQLAFF 271

Query: 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
           +H QT++  +P   + P +FATA MS ++ V  L KD+PD+EGDK FG+Q+  V LG+++
Sbjct: 272 LHMQTFVYKRPIVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIQSFSVRLGQKR 331

Query: 317 V 317
           V
Sbjct: 332 V 332

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|81295660|gb|ABB70123.1| homogentisate phytyltransferase VTE2-1 [Triticum aestivum]

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 178/310 (57%), Gaps = 13/310 (4%)

Query: 8   NLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLV 67
           ++ P F  +Q  G  R   S I   +  +   C     + + N ++ISH +     K   
Sbjct: 25  HILPSFCSIQRNGKGRVTLS-IQASKGPTINHCKKFLDWKYSN-HRISHQSINTSAKA-- 80

Query: 68  PLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPV 127
                 G +LQ   + + PA   SF + +   L+A    +R +  I   +S+ SV  L V
Sbjct: 81  ------GQSLQPETEAHDPA---SFWKPISSSLDAFYRFSRPHTIIGTALSIVSVSLLAV 131

Query: 128 QSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGI 187
           +SLS ++P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+NKP LPLASGE S  TG+
Sbjct: 132 ESLSDISPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGV 191

Query: 188 AICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247
           AI +  A +S  L ++ GSP +  A+    + G AYSV LP+ RWK    +A   ++ + 
Sbjct: 192 AIVSVFAAMSFGLGWVVGSPPLFWALFISFVLGTAYSVNLPYFRWKRSAVVAALCILAVR 251

Query: 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQT 307
            +I+Q+ +F+H QT++  +P   + P +FATA M+ ++ V  L KD+PD+EGD+ FG+Q+
Sbjct: 252 AVIVQLAFFLHIQTFVFRRPAVFSKPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIQS 311

Query: 308 LCVLLGKEKV 317
             V LG+ KV
Sbjct: 312 FSVRLGQSKV 321

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/320 (37%), Positives = 186/320 (58%), Gaps = 10/320 (3%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKFASPIVTQ---RHKSSIK--CSSQSSFSFPNQNKISHN 57
           M  L L P  F P +S  CSR+    + +Q   R  S+I   CS +     P  +   HN
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHN 60

Query: 58  NNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIV 117
           + K        L+  +  A  +    +KP A  S  +     LNA    +R +  I  I+
Sbjct: 61  DRKLVHTRTNELSHLN--ATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIGTIM 116

Query: 118 SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177
           S+ SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP LPLA
Sbjct: 117 SIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNLPLA 176

Query: 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTF 237
           SGE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV LPFLRWK    
Sbjct: 177 SGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSVNLPFLRWKRFAV 236

Query: 238 MAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDV 297
           +A   ++ +  +++Q+ +F+H QT++  +    + P +FATA MS ++ V  L KD+PD+
Sbjct: 237 VAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIFATAFMSFFSVVIALFKDIPDI 296

Query: 298 EGDKAFGMQTLCVLLGKEKV 317
           EGD+ +G+++  V LG+++V
Sbjct: 297 EGDRIYGIRSFSVRLGQKRV 316

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 185/319 (57%), Gaps = 9/319 (2%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKF----ASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNN 58
           M  L L P  F P +S  CSR+     +  ++ +    ++ CS +     P  +   HN+
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHND 60

Query: 59  NKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVS 118
            K        L+  +  A  +    +KP A  S  +     LNA    +R +  I  I+S
Sbjct: 61  RKLVHTRTNELSHLN--ATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIGTIMS 116

Query: 119 VTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178
           + SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP LPLAS
Sbjct: 117 IISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNLPLAS 176

Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFM 238
           GE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV LPFLRWK    +
Sbjct: 177 GEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSVNLPFLRWKRFAVV 236

Query: 239 APFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVE 298
           A   ++ +  +++Q+ +F+H QT++  +    + P +FATA MS ++ V  L KD+PD+E
Sbjct: 237 AAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIFATAFMSFFSVVIALFKDIPDIE 296

Query: 299 GDKAFGMQTLCVLLGKEKV 317
           GD+ +G+++  V LG+++V
Sbjct: 297 GDRIYGIRSFSVRLGQKRV 315

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 150/218 (68%)

Query: 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
           L++    +R +  I  ++ +TSV  LPV+++S+++P F +G+LKA+V  + MNI +  LN
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 160 QICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT 219
           Q+ DVEIDK+NKPYLPLASG+ SMGTG+AI + S L S A+  +  SP +  A++   + 
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 220 GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279
           G+ YS+ LPFLRWK   F+A   ++I+  +++Q+ +F+H Q ++LGK   VT   VFATA
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
            M  ++ V  L KD+PDV+GD+ +G+Q+  V LG+E+V
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERV 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479603|ref|XP_003610087.1| Homogentisate phytyltransferase [Medicago truncatula] gi|355511142|gb|AES92284.1| Homogentisate phytyltransferase [Medicago truncatula]

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 152/241 (63%), Gaps = 1/241 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           +QS +   PA  P + L  VK  L+A    +R +  I   +S+ SV  L  + LS ++P 
Sbjct: 92  EQSFESEHPAFDPKNILVAVKNSLDAFYRFSRPHTVIGTALSIISVSLLAAEKLSDISPL 151

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG  I   S++L
Sbjct: 152 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSIL 211

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256
           S  LA++ GS  +  A+    + G AYS+ +P LRWK    +A   ++ +  +I+Q+ +F
Sbjct: 212 SFWLAWIVGSWPLFWALFISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRAVIVQLAFF 271

Query: 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
           +H QT++  +P   + P +FATA MS ++ V  L KD+PD+EGDK FG+Q+  V LG+++
Sbjct: 272 LHMQTFVYKRPVVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIQSFSVRLGQKR 331

Query: 317 V 317
           V
Sbjct: 332 V 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 165/277 (59%), Gaps = 16/277 (5%)

Query: 57  NNNKPPCKP-----LVPLALQDGHALQQSEDD-----NKPAAAPSFLEV------VKRKL 100
           +++K   KP     LV L  Q+   L  S+D      N  A  P   +        +  L
Sbjct: 38  DSSKVVAKPKFRNNLVRLDGQESSLLLYSKDKSRFRVNATAGQPEAFDANSKQKSFRDSL 97

Query: 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQ 160
           +A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI +  LNQ
Sbjct: 98  DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157

Query: 161 ICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTG 220
           + DVEIDK+NKPYLPLASGE S+ TGIAI A  +++S  L ++ GS  +  A+    + G
Sbjct: 158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217

Query: 221 AAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAI 280
            AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +FATA 
Sbjct: 218 TAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAF 277

Query: 281 MSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           MS ++ V  L KD+PD+EGDK FG+++  V LG+++V
Sbjct: 278 MSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 182/323 (56%), Gaps = 12/323 (3%)

Query: 6   CLNLAPKFNPLQSPG------CSRKFASPIVTQRH-KSSIKCSSQSSFSFPNQNK----I 54
           CLN  PK+  L  PG        +K  + I+ +   K  I CS +S     N  K    +
Sbjct: 9   CLNTPPKYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYV 67

Query: 55  SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQIN 114
             N      K  +P      + L  + +D     + S    +   LN++   +R +  I 
Sbjct: 68  LRNLRILTRKNGIPAIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174
            I+ +TSV  LPV+++  ++P + +G+LKA+V  + MNI +  LNQ+ DVEIDK+NKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKS 234
           PLASG+ SM TGI I + S LLSL +     SP +L A++     G+ YS+ LPFLRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDL 294
           H F+A   ++I+  +++Q+ +F+H Q ++LGK   +    +FATA M  ++    L KD+
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDI 307

Query: 295 PDVEGDKAFGMQTLCVLLGKEKV 317
           PDVEGD+ +G+Q+  V LG+E+V
Sbjct: 308 PDVEGDRDYGIQSFSVSLGQERV 330

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 146/221 (66%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           +  L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI + 
Sbjct: 95  RDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIV 154

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LNQ+ DVEIDK+NKPYLPLASGE S+ TGIAI A  +++S  L ++ GS  +  A+   
Sbjct: 155 GLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWALFVS 214

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            + G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +F
Sbjct: 215 FILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPVMFTRPLIF 274

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           ATA MS ++ V  L KD+PD+EGDK FG+++  V LG+E+V
Sbjct: 275 ATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERV 315

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338810328|sp|B7FA90.1|HPT1_ORYSJ RecName: Full=Probable homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=OsVTE2-1; Flags: Precursor gi|215769309|dbj|BAH01538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 186/328 (56%), Gaps = 17/328 (5%)

Query: 4   MQCLNLAPKFNPLQSPGCS-----RK--FASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +     R+  F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPF 229
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+ LPF
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPF 237

Query: 230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
           LRWK    +A   ++ +  +I+Q+ +F+H QT++  +P   T P +FATA M+ ++ V  
Sbjct: 238 LRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIA 297

Query: 290 LLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           L KD+PD+EGD+ FG+++  V LG++KV
Sbjct: 298 LFKDIPDIEGDRIFGIKSFSVRLGQKKV 325

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.672	0.554	0.417	3.1e-44
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.814	0.643	0.335	1.3e-34
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.685	0.545	0.364	4.6e-34
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.552	0.455	0.331	6.5e-21

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 91/218 (41%), Positives = 135/218 (61%)

Query:   100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
             L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI +  LN
Sbjct:    97 LDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLN 156

Query:   160 QICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLT 219
             Q+ DVEIDK+NKPYLPLASGE S+ TGIAI                   +  A+    + 
Sbjct:   157 QLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFML 216

Query:   220 GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279
             G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +FATA
Sbjct:   217 GTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query:   280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
              MS ++ V  L KD+PD+EGDK FG+++  V LG+++V
Sbjct:   277 FMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 90/268 (33%), Positives = 137/268 (51%)

Query:    50 NQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
             N+   + N +K   K  V  A+ +    Q  E + +     S  + V   L+      R 
Sbjct:    68 NEGGSTSNTSKECEKKYVVNAISE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRP 123

Query:   110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
             YA   I++  T    + V+ LS ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKI
Sbjct:   124 YAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKI 183

Query:   170 NKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLTGAAYSVPLPF 229
             NKP LPLASG+LS    + I                   +   V    +  +AY+V LP 
Sbjct:   184 NKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPL 243

Query:   230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
             LRWK +  +     +  + +   + +F+H QT +  +P     P +F TAI+SIYA V  
Sbjct:   244 LRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIA 303

Query:   290 LLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
             L KD+PD+EGD+ FG+Q+L + LG ++V
Sbjct:   304 LFKDIPDMEGDEKFGIQSLSLRLGPKRV 331

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 81/222 (36%), Positives = 121/222 (54%)

Query:    96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISL 155
             V   L+      R YA  ++++  T    + V+ LS ++ AF +G L+ VVA I ++I  
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   156 CSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIA 215
               LNQ+CD+EIDKINKP LPLASG LS    + I                   +   V  
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   216 WGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFV 275
               +  AAY+V LP LRWK +  +   + +  + +   + +F+H QT +  +P     P +
Sbjct:   227 CCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLI 286

Query:   276 FATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
             F TAI+SIYA V  L KD+PD+EGD+ FG+Q+L + LG ++V
Sbjct:   287 FCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRV 328

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 6.5e-21, P = 6.5e-21
 Identities = 61/184 (33%), Positives = 96/184 (52%)

Query:   136 AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXX 195
             + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ +   +      
Sbjct:   135 SLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAI 194

Query:   196 XXXXXXXXXXXPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254
                        P +  ++ + GL  G  YSVP P LR K     A   +  + G +L   
Sbjct:   195 AGLLVVGFNFGPFIT-SLYSLGLFLGTIYSVP-P-LRMKRFPVAAFLIIATVRGFLLNFG 251

Query:   255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314
              + H+    LG PF+ + P  F T+ ++++A V  + KDLPDVEGD+ F + TL   LG 
Sbjct:   252 VY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGV 310

Query:   315 EKVS 318
               ++
Sbjct:   311 RNIA 314


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      324       296   0.00093  115 3  11 22  0.46    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.47u 0.15s 23.62t   Elapsed:  00:00:01
  Total cpu time:  23.47u 0.15s 23.62t   Elapsed:  00:00:01
  Start:  Thu May  9 21:14:14 2013   End:  Thu May  9 21:14:15 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	6e-74
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-37
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	4e-21
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-18
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	2e-13
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	4e-13
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	3e-10
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-09
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	5e-09
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	1e-08
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	9e-07
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	9e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	1e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	4e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	2e-04
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	7e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  228 bits (584), Expect = 6e-74
 Identities = 88/201 (43%), Positives = 134/201 (66%)

Query: 117 VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPL 176
           + +TSV  L V+SLS  +P F  G+L+A+V  + MNI +  LNQ+ D+EIDK+NKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHT 236
           ASGE S+ TG+AI    A++S  + ++ GS  +  A+    + G AYS+ LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 237 FMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPD 296
             A   ++ +  +++Q+ +F+H QT++LG+P   T P +FATA M  ++ V  L KD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 297 VEGDKAFGMQTLCVLLGKEKV 317
           VEGD+ FG+++  V LG+++V
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRV 201

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  135 bits (342), Expect = 2e-37
 Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 4/190 (2%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIA 188
           S + +  A L  +L A +A +  N+ +  LNQ+ D+EID+INKP+LPLA+GE S   G  
Sbjct: 43  SSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQR 102

Query: 189 ICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248
           I   + +L+L LA L G P +L  V    L G AYS  LP +R K    +A   +  + G
Sbjct: 103 IVIITGILALILAALLG-PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRG 159

Query: 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTL 308
           +I+ +  F+H Q +LLG    +       T  + ++ F   + KD+PD+EGD+ + + T 
Sbjct: 160 VIVNLGLFLHFQ-WLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTF 218

Query: 309 CVLLGKEKVS 318
            + LGK+ V 
Sbjct: 219 TLRLGKQAVF 228

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 90.3 bits (224), Expect = 4e-21
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 14/198 (7%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTG 186
           +L+      LL +L  ++A + +  +   LN   D EID    NKP  PL SG +S    
Sbjct: 13  ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246
           + +     LL L LA L G   +L  ++   L G  YS   P LR K    +    + + 
Sbjct: 73  LLLGLALLLLGLLLALLLGPLLLLLGLLGLLL-GLLYS---PPLRLKRRPLLGELVVGLA 128

Query: 247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQ 306
            GL++ +  +                 F+ + AI+        L  D+ DVEGD+  G++
Sbjct: 129 FGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAIL--------LTNDIRDVEGDRKAGIR 180

Query: 307 TLCVLLGKEKVSIYIILI 324
           TL V LG+++      L+
Sbjct: 181 TLPVRLGRKRALALYALL 198

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 17/189 (8%)

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSMGTGIAICAGSAL 195
           L  +L A +A      +   +N + D EID+IN      PL SG +S+   + +     L
Sbjct: 46  LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLL 105

Query: 196 LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255
           L LALA L    A L   +A  +   AY         K  TF+    L +  GL      
Sbjct: 106 LGLALALLLNPLAFL-LSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGA 158

Query: 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKE 315
                +  L          +   AI+    +   ++  + D+EGD+  G+++L VL G +
Sbjct: 159 AAVGGSLPL------LAWLLLLAAILWTLGYD--IIYAIQDIEGDRKAGLKSLPVLFGIK 210

Query: 316 KVSIYIILI 324
           K     +L+
Sbjct: 211 KALALALLL 219

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 34/235 (14%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           + K+ A   + R    +   ++V     + +  L  +  A LLG L A  A    N    
Sbjct: 1   RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP-LDEA-LLGFLTAFFASGSANA--- 55

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LN   D E+D+IN+P  P+ SG +S    + +     +L L  A+L    A L  ++  
Sbjct: 56  -LNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            L G  Y+      + K +  +    +  L G+      FI      +G+  E       
Sbjct: 115 VL-GILYN-----WKLKEYGLIGNLYVAFLTGMT-----FIFG-GIAVGELNE------- 155

Query: 277 ATAIMSIYAFVNGL----LKDLPDVEGDKAFGMQTLCVLLGKEK-----VSIYII 322
           A  +++  AF+  L    +KD+ DVEGD+  G +TL +L G++       +++I+
Sbjct: 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFIL 210

Length = 279

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 12/211 (5%)

Query: 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173
           N++++      + + SL    P   L +L   +    + I    +N + D+E D INKP 
Sbjct: 15  NLLIAALGQSLVYMASLLLGLPISWLLLLITFLIAAAVYI----INYLTDLEEDIINKPE 70

Query: 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWK 233
             + S   + G  + +      L   L  + G P      I   + G  YSV     R K
Sbjct: 71  RVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-KRRLK 129

Query: 234 SHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKD 293
                    + +L  L   I    + Q  +           VF         F+  ++ D
Sbjct: 130 RIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLY---AVFIFLKS----FIREIVFD 182

Query: 294 LPDVEGDKAFGMQTLCVLLGKEKVSIYIILI 324
           + D+EGD+  G++TL ++LGKE+   +++++
Sbjct: 183 IKDIEGDRKSGLKTLPIVLGKERTLKFLLIL 213

Length = 285

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 29/173 (16%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           +N I D+EIDKINKP  P+ SG +S+           ++ L L+      A L A++   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN-- 113

Query: 218 LTGAAYSVPLPF--LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFV 275
                 S+ L       K    +    +  L GL      FI       G         +
Sbjct: 114 ------SILLYLYAKDLKKTGLIGNLIVAYLTGLS-----FIFG-----GLAVFNVLRII 157

Query: 276 FATAIMSIYAFVNGL----LKDLPDVEGDKAFGMQTLCVLLGKEKVSIYIILI 324
               I+ + AF +      +KD+ D+EGD    + TL +  G +K S YI  I
Sbjct: 158 ----ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKK-SWYIAKI 205

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           S+N   D ++D IN+P  P+ SG +S+           +  L +A + G+  ++   +  
Sbjct: 56  SINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVG 115

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            +    YS+P P ++ K + ++ P  + +       +P+      +       V    ++
Sbjct: 116 IVLAVIYSMP-P-IKLKRNGWLGPPAVGLSY---EGLPWMAGHAIFAPLTWQSVVVALIY 170

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319
           +     I   +N    D   VEGD+  G+++L V++G ++ +I
Sbjct: 171 SLGAHGI-MTLN----DFKSVEGDRQLGLRSLPVMIGVKRAAI 208

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 11/163 (6%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           LN   D E+D IN+PY P+ SG +S+   + + A   +L LA+A+L G P V  A +   
Sbjct: 84  LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGL 142

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIPYFIHSQTYLLGKPFEVTGPFVF 276
                YS P P LR K + ++        +GL    +P++  +  +  G P   + P V 
Sbjct: 143 FLAWIYSAP-P-LRLKQNGWLGN----YAVGLSYEGLPWWAGAAAFGAGLP---SWPIVI 193

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319
              + S+ A     L D   VEGD+  G+++L V+ G++  + 
Sbjct: 194 LALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAAR 236

Length = 314

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 50/209 (23%)

Query: 136 AFLLGVLKAVVAQ-----------IFMNISL-CS----LNQICDVEIDKINKPYLPLASG 179
           A ++G+L ++VA            IF+ + L CS    +N   D EIDKIN+P  PL  G
Sbjct: 18  AGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77

Query: 180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT--GAAYSVPLPF---LRWKS 234
            +S    +        + LALA+L    A L A+ A+ L    A    PLPF   +    
Sbjct: 78  AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVAL 137

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF-VN---GL 290
            T   P    I +G I    Y                         ++I AF VN    +
Sbjct: 138 LTGATPIYGAIAVGRIGLAGY-------------------------LAICAFLVNVAREI 172

Query: 291 LKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319
           +KD+ D+EGDKA G +TL +++GK++ + 
Sbjct: 173 MKDIEDIEGDKAKGAKTLPIIIGKKRAAY 201

Length = 277

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCA 212
           ++N   D +ID IN+PY P+ SG +S    I       +  +A+AF+    +G       
Sbjct: 72  TINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVF 131

Query: 213 VIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272
           V+A   +  A+    P L+ K + ++  F L       + +P++  +   L G   E+  
Sbjct: 132 VLALFGSFIAFIYSAPPLKLKQNGWLGNFAL---GASYIALPWW--AGHALFG---ELNP 183

Query: 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKE 315
                T I SI      ++ D   VEGD+A G+Q+L V  G E
Sbjct: 184 DIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIE 226

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 16/166 (9%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL------SGSPAVL 210
           ++N   D EID IN+PY P+ SG +S    I       L  L LA+          P V 
Sbjct: 141 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF 200

Query: 211 CAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEV 270
              +   L    YS P P L+ K + ++  +    L    + +P++  +   L G    +
Sbjct: 201 YLALGGSLLSYIYSAP-P-LKLKQNGWIGNYA---LGASYISLPWW--AGQALFG---TL 250

Query: 271 TGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
           T   V  T + SI      ++ D   +EGD+A G+Q+L V  G E 
Sbjct: 251 TPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVET 296

Length = 375

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 126 PVQSLSQVTPAFLLGVLKAVVAQIFMNISLCS-----LNQICDVEIDKI--NKPYLPLAS 178
           P+ + + + P  LL VL A V   F    L S     +N I DVE D++   K   P+AS
Sbjct: 33  PIFAGNLLNPGALLKVLLAFVL--F---CLASSAVYLVNDIRDVEADRLHPTKRNRPIAS 87

Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
           G +S+     +     + SLALA+L  SP +   ++ + +   AYS
Sbjct: 88  GVVSVSLAYILAVVLLVASLALAYLL-SPKLALVLLVYLVLNLAYS 132

Length = 295

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 49/182 (26%), Positives = 72/182 (39%), Gaps = 51/182 (28%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           +N   D EID+IN+P  P+ SG +S    +A    S LL  A   L+     LC  IA  
Sbjct: 57  INDYFDREIDRINRPDRPIPSGAVSPRGALAF---SILLFAAGVALAFLLPPLCLAIA-- 111

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH-------SQTYLLGKPF-- 268
                                    L   + L+L              S  YL G  F  
Sbjct: 112 -------------------------LFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLF 146

Query: 269 --------EVTGPFV-FATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI 319
                    +    V FA A ++  A    ++KD+ D+EGD+A G +TL +L+G  K ++
Sbjct: 147 GGAAVGTEGLLALLVLFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRK-AL 203

Query: 320 YI 321
           Y+
Sbjct: 204 YV 205

Length = 276

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 21/121 (17%)

Query: 141 VLKAVVAQIFMNISLCS-----LNQICDVEIDKIN--KPYLPLASGELSMGTGIAICAGS 193
           +L A++A  F+  SLC+     LN + D+E D+ +  K   P ASG L +  G+A     
Sbjct: 225 LLAALLA--FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL 282

Query: 194 ALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSH------TFMAPFTLVILM 247
            L  LALA     PA L  ++A+     AYS     LR K        T  A +TL I+ 
Sbjct: 283 LLAGLALALA-LGPAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIA 336

Query: 248 G 248
           G
Sbjct: 337 G 337

Length = 479

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 24/178 (13%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG------SPAVL 210
           S+N   D+E+D++N+P  P+ SG LS    +       LL++ L    G         V+
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 211 CAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPF- 268
            + I  GL     YS P P    K+    AP  +    G I          T+L      
Sbjct: 128 ISSILAGLFVAYIYSAP-PLKLKKNILTSAP-AVGFSYGFI----------TFLSANALF 175

Query: 269 -EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK---VSIYII 322
            ++    V+   +    A    ++ D   VEGDK  G+++L V++G +    VS  II
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIII 233

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	99.98
PRK05951	296	ubiA prenyltransferase; Reviewed	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12874	291	ubiA prenyltransferase; Reviewed	99.97
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.97
PRK13106	300	ubiA prenyltransferase; Reviewed	99.97
PRK13595	292	ubiA prenyltransferase; Provisional	99.97
PRK12895	286	ubiA prenyltransferase; Reviewed	99.97
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
PRK12886	291	ubiA prenyltransferase; Reviewed	99.97
PRK12888	284	ubiA prenyltransferase; Reviewed	99.97
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.97
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.96
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.96
PLN02922	315	prenyltransferase	99.96
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.96
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.96
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.96
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12876	300	ubiA prenyltransferase; Reviewed	99.95
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
PRK12873	294	ubiA prenyltransferase; Reviewed	99.94
PRK12871	297	ubiA prenyltransferase; Reviewed	99.94
PRK12872	285	ubiA prenyltransferase; Reviewed	99.93
PRK12875	282	ubiA prenyltransferase; Reviewed	99.93
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.93
PRK13591	307	ubiA prenyltransferase; Provisional	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.91
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.88
PLN02776	341	prenyltransferase	99.88
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.86
PRK08238	479	hypothetical protein; Validated	99.84
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.79
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.35
KOG4581	359	consensus Predicted membrane protein [Function unk	99.31
PRK13591	307	ubiA prenyltransferase; Provisional	95.29
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.99
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.63
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	91.09
PRK12872	285	ubiA prenyltransferase; Reviewed	90.62
PLN02922	315	prenyltransferase	89.55
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	89.21
PRK12875	282	ubiA prenyltransferase; Reviewed	89.06
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	89.0
PLN00012	375	chlorophyll synthetase; Provisional	88.61
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.62
PRK13105	282	ubiA prenyltransferase; Reviewed	87.59
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	87.44
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	87.01
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	86.1
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	84.74
PRK12888	284	ubiA prenyltransferase; Reviewed	84.4
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	84.1
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	83.93
PRK12871	297	ubiA prenyltransferase; Reviewed	82.98
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	82.9
PRK12392	331	bacteriochlorophyll c synthase; Provisional	82.58
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	82.34
PRK12884	279	ubiA prenyltransferase; Reviewed	82.32
PRK12882	276	ubiA prenyltransferase; Reviewed	81.34
PRK12886	291	ubiA prenyltransferase; Reviewed	81.02
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	80.91
PRK12874	291	ubiA prenyltransferase; Reviewed	80.37

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.9e-38  Score=294.02  Aligned_cols=203  Identities=43%  Similarity=0.778  Sum_probs=178.4

Q ss_pred             HHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHH
Q 020551          120 TSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA  199 (324)
Q Consensus       120 ~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~  199 (324)
                      +..+++|.+..+++++.++.+.+.+++++++++.+..++|||+|+|+||+|||+||+|||++|+++++.+++.+.++|+.
T Consensus         4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~   83 (280)
T PLN02878          4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG   83 (280)
T ss_pred             hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34456676666666666778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHH
Q 020551          200 LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA  279 (324)
Q Consensus       200 la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~  279 (324)
                      +++..|+++++++++.++++++.||..+||+|+||.+++...+...+.+....+|+|.++++.++|++..++++.++..+
T Consensus        84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~  163 (280)
T PLN02878         84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA  163 (280)
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence            99999988777776778789999998789999999999988888777787788999999888888876655656666666


Q ss_pred             HHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       280 ~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      +++++..+++++||++|+|||++.|++|+|+++|++++.+++.
T Consensus       164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~  206 (280)
T PLN02878        164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV  206 (280)
T ss_pred             HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHH
Confidence            7778889999999999999999999999999999999998764

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.2e-37  Score=294.30  Aligned_cols=230  Identities=31%  Similarity=0.438  Sum_probs=183.0

Q ss_pred             chhhhHHHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhh
Q 020551           89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID  167 (324)
Q Consensus        89 ~~~~~~~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D  167 (324)
                      |++.++...+.+++|++++|||+.+.+.++++.++++|...... .....+..++.++++...++.+.+.+|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            34567777889999999999999999999999888876432221 12212333444455555555556669999999999


Q ss_pred             hccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHH
Q 020551          168 KINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM  247 (324)
Q Consensus       168 ~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~  247 (324)
                      ++|||+||+++|++|+++++.+.+++.++|+++++..|++.+.+ .+++.+++++||.  ||+|+||+|++++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~-~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLIT-VGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999766544 3578889999999  99999999998999988888


Q ss_pred             HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       248 g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      |..+.+|.+.+.... .+....++...++..+++++++.++++.||++|+|||++.|+||+|+++|++++.+++.
T Consensus       159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~  232 (308)
T PRK12887        159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC  232 (308)
T ss_pred             HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHH
Confidence            887778876543211 23233445555666667778999999999999999999999999999999999987653

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=8.1e-34  Score=267.03  Aligned_cols=209  Identities=19%  Similarity=0.170  Sum_probs=164.4

Q ss_pred             HHHHHhHccchHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccC
Q 020551          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (324)
Q Consensus       101 ~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG  179 (324)
                      |+|++++||+++...+++++.|.+++....++ +++..  .++.+++++.++++++|.+|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46889999999999999999999887322222 33321  2344667889999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHHh
Q 020551          180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHS  259 (324)
Q Consensus       180 ~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~  259 (324)
                      ++|+++++.+.+++.++++++++.++.+...+..+++++++++||.  ||+++||+++++++.+++.++.....+.+   
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~---  153 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH---  153 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence            9999999999999999999888888766523323457778999999  99999999989999988765532111111   


Q ss_pred             hhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          260 QTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       260 ~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                        ...+.   .++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++++++
T Consensus       154 --~~~~~---~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~  210 (283)
T TIGR01476       154 --AIFAP---LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVA  210 (283)
T ss_pred             --HHhCC---CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHH
Confidence              11221   2334444445566788889999999999999999999999999999998764

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=1.6e-32  Score=266.66  Aligned_cols=213  Identities=23%  Similarity=0.263  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc
Q 020551           94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN  170 (324)
Q Consensus        94 ~~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n  170 (324)
                      +...+++++|++++||++|...+++++.|++.. +   .+++..   +...+++++++.++++++|++|||+|+|+|++|
T Consensus        79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~  154 (375)
T PLN00012         79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN  154 (375)
T ss_pred             ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC
Confidence            445677899999999999999999999999842 2   233221   112355667788999999999999999999999


Q ss_pred             CCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHH-------cHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHH
Q 020551          171 KPYLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTL  243 (324)
Q Consensus       171 ~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~l-------g~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v  243 (324)
                      +|+||+++|++++++++.+.+++.++++.+++.+       +++.+.++ +++++++++||.  ||+++||++++|++.+
T Consensus       155 ~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi~l~~~YS~--pPl~lKr~~~~G~v~l  231 (375)
T PLN00012        155 EPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGSLLSYIYSA--PPLKLKQNGWIGNYAL  231 (375)
T ss_pred             CCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHHHHhhhhcC--CchhhhHhccHhHHHH
Confidence            9999999999999999997766666665555443       33333333 457778999999  9999999999999887


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          244 VILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       244 ~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      |..++.   ++++...  .+.|.   +++..+++.++.++++.++++.||++|+|+|+++|++|+|+++|++++++++
T Consensus       232 G~~~~~---lp~~~g~--a~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~  301 (375)
T PLN00012        232 GASYIS---LPWWAGQ--ALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWIC  301 (375)
T ss_pred             HHHHHH---HHHHHHH--HHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHH
Confidence            665542   2322211  22332   3334444455666888999999999999999999999999999999998875

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2e-32  Score=261.19  Aligned_cols=215  Identities=22%  Similarity=0.223  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHH-HHHHHHHHHHHHHHHhhhhcccchhhhhccCCC
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLG-VLKAVVAQIFMNISLCSLNQICDVEIDKINKPY  173 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~-~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~  173 (324)
                      ...+++++|++++||+++..++++++.|++.+..  .+........ ++.++++..++++++|++|||+|+|+|++|+|+
T Consensus        22 ~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~   99 (314)
T PRK07566         22 PTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPY   99 (314)
T ss_pred             ccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCC
Confidence            3467799999999999999999998888876521  1222110111 234556778899999999999999999999999


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH-HHH
Q 020551          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQ  252 (324)
Q Consensus       174 Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~-~~~  252 (324)
                      ||+++|++++++++.+++++.++++++++.+|++.+.++ +++++++++||.  ||+++||+++++|+.+++.+|. +..
T Consensus       100 Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~  176 (314)
T PRK07566        100 RPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWW  176 (314)
T ss_pred             CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999988888887665554 456777899999  9999999998899999887753 223


Q ss_pred             HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      .++++      .+. ..+++..++...+.++++.+++..||++|+|+|+++|+||+|+++|++++.++.
T Consensus       177 ~g~~~------~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~  238 (314)
T PRK07566        177 AGAAA------FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIA  238 (314)
T ss_pred             HHHHH------hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHH
Confidence            33222      121 123344445455566778888999999999999999999999999999988664

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=5.3e-32  Score=259.44  Aligned_cols=215  Identities=19%  Similarity=0.234  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCC
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY  173 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~-~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~  173 (324)
                      ..++++|+|++++||++++ ..++++.|.++|.+.. +......+ .+...++.+.+...++|++|||+|+|+|++|+|+
T Consensus         7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt   84 (331)
T PRK12392          7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT   84 (331)
T ss_pred             chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCC
Confidence            3457799999999999998 6666777777875322 22221111 1122233445566778999999999999999999


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHHcH-------HHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHH
Q 020551          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL  246 (324)
Q Consensus       174 Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~-------~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~  246 (324)
                      ||+++|++|+++++.+.+++.++++.+++.++.       +.+++..+++++++++||.  ||+++||+++++++.+++.
T Consensus        85 Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~  162 (331)
T PRK12392         85 RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFS  162 (331)
T ss_pred             CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHH
Confidence            999999999999999999888888877666542       2222322457789999999  9999999998899888887


Q ss_pred             HHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       247 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ++.....++.+     .+|.   .++..+++..+.++|+.+.+++||++|+|+|++.|+||+|+++|++++.+++
T Consensus       163 ~~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~  229 (331)
T PRK12392        163 YGFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVS  229 (331)
T ss_pred             HHHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHH
Confidence            77533333222     2332   2334444445566888999999999999999999999999999999997664

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=9.4e-32  Score=255.75  Aligned_cols=213  Identities=22%  Similarity=0.257  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~  171 (324)
                      ...+++++|++++||+++...+++++.|...+ +   ++++..   +...+.+++++.++++++|.+|||+|+|.|+.|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            34567899999999999999999999998853 2   233221   1113444567799999999999999999999999


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHc-------HHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHH
Q 020551          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV  244 (324)
Q Consensus       172 p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg-------~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~  244 (324)
                      |+||+++|++++++++.+++++.++++++++.+.       ++.+.++ +++++++++||.  ||+++||++++|++.++
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence            9999999999999999998888888777665543       3333333 467788999999  99999999988998887


Q ss_pred             HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       245 i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      ..++.....+.++     +.|   ++++..++.....++++.++++.||++|+|+|+++|+||+|+++|+|++.++..
T Consensus       164 ~~~~~~~~~~~~a-----~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~  233 (306)
T TIGR02056       164 ASYIALPWWAGHA-----LFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICV  233 (306)
T ss_pred             HHHHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHH
Confidence            6555322222121     223   233444455556678889999999999999999999999999999999887643

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=3.5e-32  Score=255.51  Aligned_cols=202  Identities=20%  Similarity=0.229  Sum_probs=164.8

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCcccc
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~s  178 (324)
                      ++++|++++||+++...+++++.|.+++.+..  .++.   .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            37899999999999999999999998885422  2322   145667888999999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (324)
Q Consensus       179 G~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~  258 (324)
                      |++|+++++.+++++.++++.+++.++++.+.++ ++++++.++|+.     ++||++.++|++++..+|..+..|+.+.
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888887766554 456667899996     5899998899999988887666665432


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       259 ~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                           .+   . ... +++....++|+.+.++.||++|+|+|+++|+||+|+++|+|++.+++
T Consensus       151 -----~~---~-~~~-~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~  203 (279)
T PRK09573        151 -----FN---V-LRI-IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIA  203 (279)
T ss_pred             -----cc---c-hHH-HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHH
Confidence                 11   1 112 22333445778889999999999999999999999999999988754

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.5e-32  Score=253.87  Aligned_cols=203  Identities=23%  Similarity=0.328  Sum_probs=166.2

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccc
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~  177 (324)
                      +++++|++++||+++....++++.|.++|.+..   ++.   .+++++++.+++++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~---~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGL---PLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC---chH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            478999999999999999999999999885432   211   24556788999999999999999999999999999999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHH
Q 020551          178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI  257 (324)
Q Consensus       178 sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~  257 (324)
                      +|++|+++++.+++++.++++++++.+|+..+.++ +++++.+++||.     ++||+++++++++++.+|.++..++.+
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888887665554 456778899997     589999889999988888766666543


Q ss_pred             HhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       258 ~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      .      +..   +...+++....++|+...++.+|++|+|+|+++|+||+|+++|+|++.+++
T Consensus       150 ~------~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~  204 (279)
T PRK12884        150 V------GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIA  204 (279)
T ss_pred             h------CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHH
Confidence            2      221   112333344556788889999999999999999999999999999998754

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=4.9e-32  Score=254.11  Aligned_cols=204  Identities=24%  Similarity=0.250  Sum_probs=163.0

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCcccc
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~s  178 (324)
                      ++|+|++++||+++..+.++.+.|+++|.+...  +...   .++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~---~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSL---TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            478999999999999999999999999854321  1111   35667888999999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (324)
Q Consensus       179 G~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~  258 (324)
                      |++|+++++.+++++.++|+.+++.+++..+.++ ++++++.++|+.     |+||++.++|++++...|.++.+|+.+ 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999888887665554 456667889987     789999889999887777554455332 


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       259 ~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                           .+...  ....+.+....++++...+++||++|+|+|+++|+||+|+++|+|++.+++
T Consensus       151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~  206 (276)
T PRK12882        151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVA  206 (276)
T ss_pred             -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHH
Confidence                 22111  112223334445677889999999999999999999999999999998764

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.1e-30  Score=247.30  Aligned_cols=207  Identities=16%  Similarity=0.166  Sum_probs=164.9

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC-----CC
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-----PY  173 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~-----p~  173 (324)
                      ++|.|++.+||+++..++.++++|.++|+...+++++..   ++++++++++++.++|.+|||+|+|.|..|+     ++
T Consensus         3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~   79 (296)
T PRK05951          3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ   79 (296)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence            589999999999999999999999999976545677543   5667789999999999999999976665554     78


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHH----HHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551          174 LPLASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (324)
Q Consensus       174 Rpl~sG~is~~~a~~~~~~~~~lgl~la----~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~  249 (324)
                      ||+++|++|+++++...+++..+++.++    +..+++.+.++ +++++.++.||.  ||+++|+++ +||+.+++.+|+
T Consensus        80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~  155 (296)
T PRK05951         80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSH  155 (296)
T ss_pred             CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHH
Confidence            9999999999999999887666654432    23354444443 568889999999  999999987 699999999998


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI  319 (324)
Q Consensus       250 ~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~  319 (324)
                      .+++|.+...     ++  .+++..+......++++....+.||++|+|+|+++|+||+|+++|+|++.+
T Consensus       156 ~~vlg~~~~~-----~~--~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a~~  218 (296)
T PRK05951        156 MLVMGLIYVW-----LG--NLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAAL  218 (296)
T ss_pred             HHHHHHHHHH-----hC--cccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhHHH
Confidence            7777765432     22  223344444556667788889999999999999999999999999999843

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=6.3e-31  Score=251.04  Aligned_cols=213  Identities=12%  Similarity=0.042  Sum_probs=164.9

Q ss_pred             HHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC----CCCc
Q 020551          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP  175 (324)
Q Consensus       100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~----p~Rp  175 (324)
                      ++.|++++||+++..+++++++|.++|+...+++++..   +++++++++++|.++|.+|||+|++.|..++    ++|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            68899999999999999999999999975445667543   5667788899999999999999998766654    5799


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHH----HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHH
Q 020551          176 LASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (324)
Q Consensus       176 l~sG~is~~~a~~~~~~~~~lgl~----la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~  251 (324)
                      +++|.+++++++..++.+..++.+    +.+..|++.+.++ +++++.+++||.  ||+++||+| +||+.+++.+|+.+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988777666554    5666676555454 578889999999  999999999 79999999999877


Q ss_pred             HHHHHHHhhhhhhCC--------CCCC--hHH----HHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccce
Q 020551          252 QIPYFIHSQTYLLGK--------PFEV--TGP----FVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV  317 (324)
Q Consensus       252 ~lg~~~~~~~~v~g~--------~~~~--~~~----~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a  317 (324)
                      +.+.+... +...+.        ..++  +..    .++....+++.+..+++.||+||+|+|+++|+||+|+++|+|++
T Consensus       156 v~g~~yv~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a  234 (317)
T PRK13387        156 FLLAVYIN-TNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG  234 (317)
T ss_pred             HHHHHHHh-cCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence            66665431 110000        0000  000    11234555667778899999999999999999999999999998


Q ss_pred             eee
Q 020551          318 SIY  320 (324)
Q Consensus       318 ~~l  320 (324)
                      .++
T Consensus       235 ~~l  237 (317)
T PRK13387        235 VVL  237 (317)
T ss_pred             HHH
Confidence            865

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.97  E-value=5.2e-31  Score=247.28  Aligned_cols=202  Identities=23%  Similarity=0.255  Sum_probs=158.9

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCcccc
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~s  178 (324)
                      ++++|++++||+++....++.+.|.+++.+..++  +..   .++.+++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3689999999999999999999999887543221  111   33455677888899999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHH
Q 020551          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (324)
Q Consensus       179 G~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~  258 (324)
                      |++++++++.++.++.++|+++++.+|++.+.++ +++.+.+++|+.     ++|++++++|++++..+|.....|+.+.
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~  150 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV  150 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988888888766554 456677999997     6788888899999888876444554321


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       259 ~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                            +.   .+...+.. .+.++++..+++.||++|+|+|+++|+||+|+++|+|++++++
T Consensus       151 ------~~---~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~  203 (277)
T PRK12883        151 ------GR---IGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIG  203 (277)
T ss_pred             ------cc---ccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHH
Confidence                  21   12222221 2234566788899999999999999999999999999987754

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=2.2e-30  Score=244.71  Aligned_cols=208  Identities=16%  Similarity=0.146  Sum_probs=162.9

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccch--hhhh--ccCCCC
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDK--INKPYL  174 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~--e~D~--~n~p~R  174 (324)
                      .++.|++++||+++..+++++++|.++|... +.+++..   ++++++++++++.++|.+|||+|+  +.|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3689999999999999999999999998532 3455432   456678899999999999999999  4674  456799


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHH----HHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551          175 PLASGELSMGTGIAICAGSALLSLALAF----LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (324)
Q Consensus       175 pl~sG~is~~~a~~~~~~~~~lgl~la~----~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~  250 (324)
                      |+++|++|+++++.++.++.+++++++.    ..+++.+.++ +++++++++||.  ||.++|+++ +||+.+++.+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence            9999999999999888777666554433    3455444333 457788899999  899999988 5999999888876


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      +..+.+..     ..+  ..++..++...+.++++...++.||++|+|+|+++|+||+|+++|+|+++++.
T Consensus       154 ~~~~~~~~-----~~~--~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~  217 (293)
T PRK06080        154 IVLGTYYL-----QAG--TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLH  217 (293)
T ss_pred             HHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHH
Confidence            65554432     111  23444555566677888999999999999999999999999999999987654

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.8e-30  Score=245.28  Aligned_cols=209  Identities=18%  Similarity=0.201  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhcc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~  171 (324)
                      +.++++++|+|++||++.+.+....+.|.++|...   .+.+++..   +++++++.+++.+++|++|||+|+|+|++|+
T Consensus         3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874          3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            45678999999999999999999999998887521   12234332   4566788889999999999999999999998


Q ss_pred             --CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551          172 --PYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (324)
Q Consensus       172 --p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~  249 (324)
                        ++||+++|++|+++++.+++++.++++.+++.++++...++ +..++....|+.      +||++.+++++.++.+|.
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~  152 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGL  152 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHH
Confidence              48999999999999999988888888888878887766554 345666889986      899999999999999998


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       250 ~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ++..|+.+..     |.   .+...+++.+..++|+.+.+++++++|+|+|+++|++|+|+++|++++.+++
T Consensus       153 ~~l~G~~av~-----g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~  216 (291)
T PRK12874        153 APIAGVVAVL-----GE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFIS  216 (291)
T ss_pred             HHHHHHHHHc-----CC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHH
Confidence            8888875431     22   2323334445557899999999999999999999999999999999987653

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.97  E-value=5.8e-31  Score=247.59  Aligned_cols=204  Identities=17%  Similarity=0.148  Sum_probs=162.4

Q ss_pred             HHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc--CCCCccc
Q 020551          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLPLA  177 (324)
Q Consensus       100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n--~p~Rpl~  177 (324)
                      +++|++++||++.....+....|.++|.+...  ++..   +++++++.+++++++|++|||+|+|+|++|  +|+||++
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            68999999999999998888889988854322  3321   455678899999999999999999999999  5699999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHH
Q 020551          178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI  257 (324)
Q Consensus       178 sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~  257 (324)
                      +|++|+++++.+++++.++++++++.++.+...++ .++.++.+.|+.      +||++.+++++.|+.+|.++..|+.+
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a  149 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA  149 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888778888888887665544 345566788986      89999999999998888777777654


Q ss_pred             HhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       258 ~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ..     |. .+.....+++....++|+.+.+++||++|+|+|+++|+||+|+++|+|++.++.
T Consensus       150 ~~-----g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~  207 (282)
T TIGR01475       150 VI-----GT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIA  207 (282)
T ss_pred             Hh-----CC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHH
Confidence            31     22 221123334445556889999999999999999999999999999998876654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.1e-30  Score=247.43  Aligned_cols=209  Identities=19%  Similarity=0.230  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--C
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--P  172 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p  172 (324)
                      ..+.++++|++++||++.+...++.+.|+++|.+..+  ++..   +++.+++.+++++++|++|||+|+|+|++|+  +
T Consensus        10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~   84 (300)
T PRK13106         10 NTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK   84 (300)
T ss_pred             hhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence            3567899999999999999999999999998854322  3322   3456788899999999999999999999995  5


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ  252 (324)
Q Consensus       173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~  252 (324)
                      +||+++|++|+++++.+.+++.++++++++.+|+..+.++. +++++.+.|+.      +||+++++++++|+.+|..+.
T Consensus        85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~  157 (300)
T PRK13106         85 NRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVF  157 (300)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHH
Confidence            89999999999999999877777777777778876665543 44555678886      899999999999988887666


Q ss_pred             HHHHHHhhhhhhCCCC-----CChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          253 IPYFIHSQTYLLGKPF-----EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~-----~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      .|+.+..     |...     ..+...+++.....+|+.+.+++|+++|+|+|+++|+||+|+++| +++.+++
T Consensus       158 ~G~~a~~-----g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~  225 (300)
T PRK13106        158 SGAVAVL-----GLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFA  225 (300)
T ss_pred             HHHHHHc-----CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHH
Confidence            7765432     2110     011122333334457899999999999999999999999999999 7776543

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.97  E-value=2.4e-30  Score=242.49  Aligned_cols=205  Identities=21%  Similarity=0.257  Sum_probs=156.6

Q ss_pred             HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCch--HHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCC
Q 020551           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL  174 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~--~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~R  174 (324)
                      ...++.+++++||.+|+.++.++.+|...+..   .+++  ..   +++.+...+..+.+.|.+|||+|+|+|++|+|+|
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~   82 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKG   82 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Confidence            45678899999999999999999999977632   2343  32   3344556678888999999999999999999999


Q ss_pred             ccccCcCCHHHHHHHHHHHHHH----HHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551          175 PLASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (324)
Q Consensus       175 pl~sG~is~~~a~~~~~~~~~l----gl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~  250 (324)
                      ++++|++|+++++.+...+.++    ++++++..|++.+.+. +++.+++++||.  ||+|+|++|++++++.. .+|.+
T Consensus        83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~~-~~g~p  158 (292)
T PRK13595         83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSNA-AYALP  158 (292)
T ss_pred             CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHHH-HHHHH
Confidence            9999999999998875544333    5566777777665443 467789999999  99999999999988863 34543


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      ...+.      .+.|..   .....+  ....+|+.+.+++++++|+|+||+.|+||+|+++|+|++.+++.
T Consensus       159 ~~~~~------~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~  219 (292)
T PRK13595        159 LALPA------LALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYAL  219 (292)
T ss_pred             HHHHH------HHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHH
Confidence            33331      123321   112222  23347789999999999999999999999999999999987764

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2.5e-30  Score=243.21  Aligned_cols=205  Identities=17%  Similarity=0.119  Sum_probs=162.9

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcc
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl  176 (324)
                      ++|+|+|++||++.+.....++.|.++|.+..  .++..   +++.+++.+++.+++|++||++|+|+|++|+  ++||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            47899999999999999999999999985322  22221   3345567889999999999999999999995  49999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (324)
Q Consensus       177 ~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~  256 (324)
                      ++|++|+++|+.+.+++.++++.+++.+|+..+.++. +.+.+...|+.      +||++++++++.|+..|.++..|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999998888888987765543 34555556665      8999999999998888877777765


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      +..     | ...+....+++.+...+|+.+.+++++++|+|+|++.|+||+|+++|++++.+++
T Consensus       150 Av~-----g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~  208 (286)
T PRK12895        150 AVI-----P-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYIS  208 (286)
T ss_pred             HHc-----C-CCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHH
Confidence            431     2 2222222233445556899999999999999999999999999999999887554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=6.8e-30  Score=240.74  Aligned_cols=206  Identities=16%  Similarity=0.199  Sum_probs=163.1

Q ss_pred             HHHHHHHHHhHccchHHH---HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--
Q 020551           97 KRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--  171 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~---~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--  171 (324)
                      .+++++|++++||++...   ..++++.|.++|.... ..++..   .++++++++++++++|++|||+|+|+|+.|+  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~~---~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDISL---LVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHHH---HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            457899999999997654   5678888998885432 133322   4566788899999999999999999999765  


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHH
Q 020551          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (324)
Q Consensus       172 p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~  251 (324)
                      ++||+++|++|+++++.+++++.++++++++.+|++.+.++ +++++.++.||.      .||++.+++++.++.+++++
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~  152 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI  152 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence            48999999999999999999999999988888887766554 456677889986      79988889999888777655


Q ss_pred             HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       252 ~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ..++.+..     | .  .++..+++....++|+.+.+++++++|+|+|+++|+||+|+++|++++.++.
T Consensus       153 l~~~~a~~-----g-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~  214 (285)
T PRK12847        153 LMAFAAVQ-----N-Q--LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYIL  214 (285)
T ss_pred             HHHHHHHc-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHH
Confidence            55554321     2 2  2334445455667899999999999999999999999999999999887654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=7.2e-30  Score=241.19  Aligned_cols=206  Identities=18%  Similarity=0.157  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--C
Q 020551           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (324)
Q Consensus        96 ~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~  173 (324)
                      +.+++++|++++||++.....++.+.|+++|....+  ++.   ..++.+++.+++++++|++|||+|+|+|++|+|  +
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            346789999999999999998989999998854322  221   134566788999999999999999999999984  8


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHH
Q 020551          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (324)
Q Consensus       174 Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~l  253 (324)
                      ||+++|++|++++..+.+.+.+.++++++..|++.+.+++ ++++..+.|+.      +||++.++++..++.++.++..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999988766666666667778877665543 45566789986      7999999999999888876666


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      |+++..     | .  .+...+++....++|+.+.+++++++|+|+|+++|+||+|+++|++++.+++
T Consensus       152 g~~a~~-----g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~  211 (291)
T PRK12886        152 AWIAIR-----G-T--IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIA  211 (291)
T ss_pred             HHHHHc-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHH
Confidence            655421     2 1  2333344445567889999999999999999999999999999999887754

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.7e-29  Score=237.83  Aligned_cols=203  Identities=17%  Similarity=0.050  Sum_probs=161.2

Q ss_pred             HHHHHHhHccchHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcc
Q 020551          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQS-LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (324)
Q Consensus       100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~-~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl  176 (324)
                      +++|++++||++.+.+....+.|.+.+... .+.+++..   +++.+++.+++++++|++|||+|+|+|++|+  ++||+
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            689999999999999888777777666421 12234322   4566788999999999999999999999998  58999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (324)
Q Consensus       177 ~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~  256 (324)
                      ++|++|+++++.+.+++.++++.+++.+++..+.++ .++++..+.|+.      .||+++++++..|+.++.++..|++
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~  151 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWI  151 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999988888888888878887665554 345556778976      7999999999998888776666655


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      +.     .|.   .++..+++.+..++|+.+.+++|+++|+|+|+++|+||+|+++|+|++.++
T Consensus       152 a~-----~g~---~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~  207 (284)
T PRK12888        152 AV-----TGT---WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWA  207 (284)
T ss_pred             HH-----cCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHH
Confidence            43     132   233444555566789999999999999999999999999999999998764

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=7.5e-30  Score=240.99  Aligned_cols=205  Identities=19%  Similarity=0.215  Sum_probs=162.1

Q ss_pred             HHHHHHHHHhHccchHHHHH---HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC-C
Q 020551           97 KRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-P  172 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~---~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~-p  172 (324)
                      ..++++|++++||++.....   ++++.|.++|.+..  .++..   +++.+++.+++++++|++|||+|+|+|+.|+ +
T Consensus         6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt   80 (290)
T PRK12870          6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVERT   80 (290)
T ss_pred             chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence            35789999999999866554   67888888885432  23222   3456678889999999999999999998754 3


Q ss_pred             -CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHH
Q 020551          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (324)
Q Consensus       173 -~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~  251 (324)
                       +||+++|++|+++++.+++++.++++.+++.+++..+.++ +++++..+.|+.      .||++.+++++.++.+|+++
T Consensus        81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  153 (290)
T PRK12870         81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFAV  153 (290)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhHH
Confidence             8999999999999999999999999998888887766555 345667789986      79988889998888888766


Q ss_pred             HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       252 ~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ..|+.+.     .|.   .+...+++....++|+.+.+++++++|+|+|+++|+||+|+++|++++.+++
T Consensus       154 l~g~~a~-----~g~---~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~  215 (290)
T PRK12870        154 LISWSAV-----TGH---LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIG  215 (290)
T ss_pred             HHHHHHH-----cCC---CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHH
Confidence            6665432     122   2333344445567899999999999999999999999999999999887654

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=4.7e-29  Score=236.56  Aligned_cols=209  Identities=14%  Similarity=0.045  Sum_probs=164.4

Q ss_pred             HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhccCCCC
Q 020551           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYL  174 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~n~p~R  174 (324)
                      .++++.|++.+||+++..+++++++|.++|+...+++++..   +++++++++++|.++|.+|||+|++  .|+. +++ 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            35689999999999999999999999999976545677643   5677889999999999999999997  6773 332 


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHH----HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551          175 PLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (324)
Q Consensus       175 pl~sG~is~~~a~~~~~~~~~lgl~----la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~  250 (324)
                      ...++..+++++...++++.+++++    +.+..|++.+.++ +++++.+++||.  ||+++|+++ +||+.+++++|+.
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHH
Confidence            2345555788888887766655543    4445565544444 568899999999  999999999 5999999999987


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ++.+.+..     ..+  ++++..++..+..++++..++..||+||+|+|+++|+||+|+++|+|+++++.
T Consensus       160 ~v~g~~yv-----~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly  223 (304)
T PRK07419        160 AVAAALYS-----QTP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLL  223 (304)
T ss_pred             HHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHH
Confidence            77776643     122  34545555566777888889999999999999999999999999999987653

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.97  E-value=4.1e-29  Score=238.27  Aligned_cols=209  Identities=20%  Similarity=0.150  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHhH---ccchHHHHHHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhh
Q 020551           95 VVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK  168 (324)
Q Consensus        95 ~~~~~l~~~l~l~---Rp~~~~~~~~~~~~g~~lA~~~~---~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~  168 (324)
                      .+..++++|++++   ||.......++++.|.++|....   ...++..   +++++++++++++++|++|||+|+|+|+
T Consensus        25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~  101 (314)
T PRK12878         25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWH---LFLFFVGAIAMRGAGCTYNDIVDRDIDA  101 (314)
T ss_pred             hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3557899999999   88899999999999999985421   1233221   4567789999999999999999999998


Q ss_pred             ccCC--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHH
Q 020551          169 INKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL  246 (324)
Q Consensus       169 ~n~p--~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~  246 (324)
                      .+++  +||+++|++|+++++.+.+++.++|+.+.+..|++.+.++ +++++..+.|+.      +||++.++++..|+.
T Consensus       102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~  174 (314)
T PRK12878        102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGLA  174 (314)
T ss_pred             CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHHH
Confidence            7764  8999999999999999999999999888888887666554 456677899986      899888888888877


Q ss_pred             HHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       247 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ++++...|+++..     |.   .++..+++.....+|+...+.+++++|+|+|+++|+||+|+++|++++.++.
T Consensus       175 ~~~~~l~g~~a~~-----g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~  241 (314)
T PRK12878        175 FSWGALMGWAAHF-----GS---LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLV  241 (314)
T ss_pred             HHHHHHHHHHHHh-----CC---CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHH
Confidence            7766666755431     32   2333334444556789999999999999999999999999999999987654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.96  E-value=4.4e-29  Score=235.63  Aligned_cols=205  Identities=24%  Similarity=0.280  Sum_probs=164.2

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCc
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rp  175 (324)
                      ..++.+++..||.++.....+.+.|..++....++     +...++++++++++.+++|++||++|+|+|++|+|  +||
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RP   85 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRP   85 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCC
Confidence            34555666666667777777777887777532221     22356677888999999999999999999999999  999


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHH
Q 020551          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (324)
Q Consensus       176 l~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~  255 (324)
                      +++|++|+++++.+.+++.++++.+++.++++.+.+. +++.++.+.|.      ++||.+++++++++..++..+..|+
T Consensus        86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~  158 (289)
T COG0382          86 LPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGA  158 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998775554 56888899994      4999999999999988887776776


Q ss_pred             HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      .+.     .|.   .....+++.+...+|+.+.++++|++|+|+|++.|++|+|+.+|++++.+++.
T Consensus       159 ~a~-----~~~---~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~  217 (289)
T COG0382         159 AAV-----GGS---LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALAL  217 (289)
T ss_pred             HHH-----hCc---cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHH
Confidence            543     221   22334445556678999999999999999999999999999999999887653

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.96  E-value=4.3e-29  Score=235.01  Aligned_cols=204  Identities=17%  Similarity=0.201  Sum_probs=158.4

Q ss_pred             HHHHHHHHhHccchHH---HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--C
Q 020551           98 RKLNAISHVTRYYAQI---NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--P  172 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~---~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p  172 (324)
                      +++++|++++|+++..   ...++++.|..+|.+..+  ++..   +++.+++.+++++++|++|||+|+|+|++++  +
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            4689999999866544   445567788888754322  2221   3455677889999999999999999998765  3


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ  252 (324)
Q Consensus       173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~  252 (324)
                      +||+++|++|+++++.+++++.++++.+++.+++..+.++ +++++..++|+.      .||++.++++..++.+|+++.
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~  150 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGIP  150 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHHH
Confidence            8999999999999999999999999888888887666554 456666889975      788888899988888887666


Q ss_pred             HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      +++.+..     | .  .+...+++.....+|+...++.++++|+|+|+++|+||+|+++|+|++.+++
T Consensus       151 ~g~~a~~-----~-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~  211 (282)
T PRK12848        151 MAFAAVQ-----G-S--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG  211 (282)
T ss_pred             HHHHHHh-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH
Confidence            6655421     2 1  2333444445566899999999999999999999999999999999887653

>PLN02922 prenyltransferase

Probab=99.96  E-value=8.5e-29  Score=235.98  Aligned_cols=214  Identities=17%  Similarity=0.148  Sum_probs=161.2

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhccCCCCc
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP  175 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~n~p~Rp  175 (324)
                      ++++.|++.+||+++..+++++++|.++|+...+.+++..   +++++++++++|.++|.+|||+|++  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            4588999999999999999999999999976545677653   5677899999999999999999986  5764432212


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHH---HHH--HcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551          176 LASGELSMGTGIAICAGSALLSLAL---AFL--SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (324)
Q Consensus       176 l~sG~is~~~a~~~~~~~~~lgl~l---a~~--lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~  250 (324)
                      -..|  ++++++..+++++++++..   ...  .|++.+.+ .+++++.+++||.  ||+++|+++ +||+.+++.+|..
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~i-G~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l  163 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILL-LAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPL  163 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHH
Confidence            2234  8999888877666655432   212  24444333 3578899999999  999999999 5999999999987


Q ss_pred             HHHHHHHHhhhhhhCCC-C---CChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          251 LQIPYFIHSQTYLLGKP-F---EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       251 ~~lg~~~~~~~~v~g~~-~---~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      ++.+.|.. ++..++.. .   ++++..++..+.+++++.+++.+||+||+|+|+++|+||+|+++|+|++.++.
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~  237 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVV  237 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHH
Confidence            77776543 11111110 0   12344556667778888999999999999999999999999999999987653

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.96  E-value=7e-29  Score=233.22  Aligned_cols=204  Identities=15%  Similarity=0.156  Sum_probs=154.7

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcc
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl  176 (324)
                      ++++|++++||++.....++++.|+++|.+.  ..++..   +++.+++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            3689999999999999999999999988532  223322   3456778889999999999999999999987  69999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHH
Q 020551          177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (324)
Q Consensus       177 ~sG~is~~~a~~~~~~~~~lgl~la~~-lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~  255 (324)
                      ++|++|+++++.+++++.++|+.+++. +++.......+..++..+.||.     ++||++++..++.++..+.++..|+
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~  150 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGY  150 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888776 7765432323344567788996     5899997544444444444444444


Q ss_pred             HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      .+.     .|   +.+...+++...+++|+.++...++++|+|+|+++|+||+|+++|+|++.+.
T Consensus       151 ~a~-----~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~  207 (279)
T PRK12869        151 ASG-----TG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRA  207 (279)
T ss_pred             HHH-----hC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHH
Confidence            332     12   1233444445556678887777788899999999999999999999988754

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=1.2e-28  Score=233.53  Aligned_cols=206  Identities=14%  Similarity=0.067  Sum_probs=157.4

Q ss_pred             HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCC
Q 020551           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYL  174 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~R  174 (324)
                      ++++++|++++||++++...++++.|+++|.+.  .+++..   +++++++.+++++++|++|||+|+|+|++|+  |+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            457999999999999999999999999998532  234322   4556788999999999999999999999987  699


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHH-HHHHHHHH
Q 020551          175 PLASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV-ILMGLILQ  252 (324)
Q Consensus       175 pl~sG~is~~~a~~~~~~~~~lgl~la~~-lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~-i~~g~~~~  252 (324)
                      |+++|++|+++++.+++++.++|+++++. .+.....++++......+.|+.     ++||+++ +|..++ +..+.++.
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l  155 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPL  155 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHH
Confidence            99999999999999999999888887654 4655444432222334668986     5899995 565554 44445566


Q ss_pred             HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      .|+++.     .|   +.++..+++.+..++|+...+..+.++|+|+|+++|+||+|+++|++++.+++
T Consensus       156 ~g~~a~-----~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~  216 (296)
T PRK04375        156 IGWAAV-----TG---SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQI  216 (296)
T ss_pred             HHHHHh-----CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHH
Confidence            665542     12   22333444455667888888888889999999999999999999999887643

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.96  E-value=1.7e-28  Score=230.87  Aligned_cols=202  Identities=17%  Similarity=0.169  Sum_probs=155.5

Q ss_pred             HHHHHhHccc---hHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCc
Q 020551          101 NAISHVTRYY---AQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (324)
Q Consensus       101 ~~~l~l~Rp~---~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rp  175 (324)
                      ++|.+++|++   .+....++...|..+|....+..++..   .++.+++.+++++++|++|||+|+|+|+.|++  +||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            4566666655   555567788888888853211112221   34556777899999999999999999987653  899


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHH
Q 020551          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (324)
Q Consensus       176 l~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~  255 (324)
                      +++|++++++++.++.++.++++++++.+|+..+.++ ++++++.+.|+.      +||++.++++..|+.++++...|+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888887766554 456777999986      899999999999888887777776


Q ss_pred             HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      ++.     .|.   .++..+++.....+|+.+.+.+++++|+|+|+++|+||+|+++|++++.+.
T Consensus       152 ~a~-----~g~---~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~  208 (281)
T TIGR01474       152 AAV-----TGD---LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWL  208 (281)
T ss_pred             HHH-----cCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHH
Confidence            542     232   233333334455688999999999999999999999999999999887553

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=2.4e-28  Score=230.00  Aligned_cols=199  Identities=16%  Similarity=0.113  Sum_probs=156.7

Q ss_pred             ccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhcc--CCCCccccCcCCH
Q 020551          108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKIN--KPYLPLASGELSM  183 (324)
Q Consensus       108 Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~n--~p~Rpl~sG~is~  183 (324)
                      ||+++..++.++++|.++|+... .+++..   +++++++++++|.++|.+|||+|++  .|+.+  .|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999997543 677543   5677889999999999999999985  36433  4789999999999


Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHcH-----HHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHH
Q 020551          184 GTGIAICAGSALLSL----ALAFLSGS-----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (324)
Q Consensus       184 ~~a~~~~~~~~~lgl----~la~~lg~-----~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg  254 (324)
                      +++...++++++++.    ++.+..|+     +.+.+..+++++.+++||.  ||+++|+++ +||+.+++.+|+.+++|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence            999988877666544    34444453     1332223567888999999  999999999 69999999999877777


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       255 ~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      .+..     ..+  .+++..++.....++++.+++..||+||+|+|+++|+||+|+++|+|+++++
T Consensus       154 ~~yv-----q~~--~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l  212 (284)
T TIGR00751       154 TQYL-----QAH--RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMY  212 (284)
T ss_pred             HHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHH
Confidence            6543     122  2344444545566778888999999999999999999999999999998765

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.96  E-value=1.2e-27  Score=227.34  Aligned_cols=206  Identities=19%  Similarity=0.244  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCC
Q 020551           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYL  174 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~R  174 (324)
                      ++++++|++++||+++....++++.|+++|...  +.++..   .++++++..+.++++|++|||+|+|+|+.++  ++|
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            457899999999999999999999999998432  334322   3455678889999999999999999998765  489


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHH
Q 020551          175 PLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (324)
Q Consensus       175 pl~sG~is~~~a~~~~~~~~~lgl~la-~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~l  253 (324)
                      |+++|++|+++++.+++++.++|+.+. +..+.....++.+..++..++||.     .+||++++++++.++..+.++..
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~  159 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV  159 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence            999999999999999998888888754 445765443332223345678985     48999999999888888877778


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      |+.+..     | .  .+...+++..++++|+.......+++|+|+|+++|++|+|+++|+|++.+.
T Consensus       160 G~~a~~-----g-~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~  218 (306)
T PRK13362        160 GYCAVT-----G-Q--FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH  218 (306)
T ss_pred             HHHHHc-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence            876532     2 2  233444555666789998888899999999999999999999999988753

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=1.6e-27  Score=224.42  Aligned_cols=202  Identities=12%  Similarity=0.015  Sum_probs=155.2

Q ss_pred             HHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhh--hhccCCCCccccCc
Q 020551          103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEI--DKINKPYLPLASGE  180 (324)
Q Consensus       103 ~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~--D~~n~p~Rpl~sG~  180 (324)
                      |++.+||+++..++.++++|.++|+...+.+++..   +++++++++++|.++|.+|||+|++.  |+.+. . ...++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence            67899999999999999999999976545677653   56677899999999999999999864  76422 1 122333


Q ss_pred             CCHHHHHHHHHHHHHHHH----HHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551          181 LSMGTGIAICAGSALLSL----ALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (324)
Q Consensus       181 is~~~a~~~~~~~~~lgl----~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~  256 (324)
                      .+++++.....++..++.    ++.+..|++.+.++ +++++.+++||.  ||+++|+++ +||+++++.+|+.++.+.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence            457777777665555443    34445564333343 568899999999  999999999 5999999999987777765


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      ..     ..+  ++++..++..+..++.+.+++..||+||+|+|+++|+||+|+++|+|++.++
T Consensus       153 yv-----qt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l  209 (285)
T TIGR02235       153 YA-----QSQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKI  209 (285)
T ss_pred             HH-----hCC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHH
Confidence            43     122  3455555556677788889999999999999999999999999999998765

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.96  E-value=8.9e-28  Score=225.75  Aligned_cols=202  Identities=17%  Similarity=0.110  Sum_probs=151.5

Q ss_pred             HHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--CCCcccc
Q 020551          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS  178 (324)
Q Consensus       101 ~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p~Rpl~s  178 (324)
                      |+|++++||+++....++++.|.++|.+.. .+++..   +++++++.+++++++|++|||+|+|+|++|+  ++||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999999985432 234322   4556788999999999999999999999976  5999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHH-hhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHH
Q 020551          179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (324)
Q Consensus       179 G~is~~~a~~~~~~~~~lgl~l-a~~lg~~~l~l~ll~~~~-l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~  256 (324)
                      |++|++++..+++++.++|+.+ .+..++....++ +++++ .+++||.     .+||++++.+++.++..+.++..|++
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~-~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLG-LFGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888874 445776655444 33444 3789995     38999876555555444444455544


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       257 ~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      +.      ++.  .++..+++.....+|+........++|+|+|+++|+||+|+++|+|++.++
T Consensus       151 a~------~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~  206 (280)
T TIGR01473       151 AV------TGS--ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQ  206 (280)
T ss_pred             Hh------cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHH
Confidence            32      222  233334444455678777666677899999999999999999999987654

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.96  E-value=1.1e-27  Score=226.08  Aligned_cols=207  Identities=16%  Similarity=0.159  Sum_probs=156.8

Q ss_pred             HHHHHHHHhHccchHHHH---HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC--C
Q 020551           98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--P  172 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~---~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~--p  172 (324)
                      +++++|+|++|.+.....   .+++..|..++....+..++..   +++.+++.+++.+++|++||++|+|+|++|+  +
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            468999999998876555   4455566666531111112222   3456778899999999999999999999875  4


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ  252 (324)
Q Consensus       173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~  252 (324)
                      +||+++|++|+++++.+.+++.++++.+.+.++++.+.++ .++++..+.|+.      +||++++++++.|+.++.+..
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l  153 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGAL  153 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888887666554 456667889986      899999999998888887677


Q ss_pred             HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      .|+.+.     .|. .. ....+.+.....+|+...+++++++|+|+|+++|++|+|+++|+++..+++
T Consensus       154 ~g~~av-----~g~-~~-~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~  215 (289)
T PLN02809        154 LGWAAV-----KGS-LD-PAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT  215 (289)
T ss_pred             HHHHHH-----hCC-CC-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH
Confidence            776432     232 11 122222344455789999999999999999999999999999999666543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.95  E-value=4.9e-27  Score=219.47  Aligned_cols=209  Identities=17%  Similarity=0.080  Sum_probs=161.0

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchh--hhhc----cC
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI----NK  171 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e--~D~~----n~  171 (324)
                      .+.+.|+++.||+++..++.++++|.++|......+++..   ++++++++++++.++|..|||+|++  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~---~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLV---ALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            3468999999999999999999999999976544566433   6778899999999999999999986  5643    22


Q ss_pred             CCCccccCcCCHHHHHHHHHHHHHHHHH----HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHH
Q 020551          172 PYLPLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM  247 (324)
Q Consensus       172 p~Rpl~sG~is~~~a~~~~~~~~~lgl~----la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~  247 (324)
                      .++.+...+++++..+...+.+...+.+    +....|++.+.+ .+++++++++|+.  +|+++++.| +||+.+++++
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~l-G~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLL-GLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence            3456666677777777776655444333    334455543333 3578899999999  899999999 6999999999


Q ss_pred             HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       248 g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      |+..+++.++. +      +..+++..++..+..++.+..++..||+||+|+|++.|++|+|+++|++.++.+
T Consensus       159 G~l~v~g~~yi-q------t~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l  224 (303)
T COG1575         159 GPLIVLGAYYI-Q------TGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHH-h------cccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHH
Confidence            98777776543 1      123455555656666777888999999999999999999999999999998754

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=2.4e-27  Score=223.65  Aligned_cols=207  Identities=16%  Similarity=0.153  Sum_probs=159.5

Q ss_pred             HHHHHHHhHccchHHHHHHHHHHHHHHhhc---c-CC---CCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccC
Q 020551           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQ---S-LS---QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (324)
Q Consensus        99 ~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~---~-~~---~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~  171 (324)
                      +++.|.++.|-++.+.+..-...|.++|..   . .+   ..++.   .+++..++.+++.+++|++|||+|+|+|++|+
T Consensus         3 ~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~   79 (300)
T PRK12876          3 RIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIK---TISLGGSAFFCARTVGIIVNQIIDCAIDKKNP   79 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCC
Confidence            589999999999999998888899999841   0 11   11222   24566788999999999999999999999999


Q ss_pred             C--CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551          172 P--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (324)
Q Consensus       172 p--~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~  249 (324)
                      |  +||+++|++|+++++.+.+++.++++++++.+|+..+.++ .+++++.+.|+.      +||++++++++.|+..+.
T Consensus        80 RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~-~~~~~~~~iY~~------~KR~t~~~~~vLGl~~~~  152 (300)
T PRK12876         80 RTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLA-VLSTLLMIIYPY------TKRVTFLCHWILGLVYYL  152 (300)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HhcCCchhHHHHHHHHHH
Confidence            5  9999999999999999998777777788888898776665 356666689986      899999999998887776


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChH--HHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeee
Q 020551          250 ILQIPYFIHSQTYLLGKPFEVTG--PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIY  320 (324)
Q Consensus       250 ~~~lg~~~~~~~~v~g~~~~~~~--~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l  320 (324)
                      ....++.+.     .++...+..  ..++......+|..+.+++++++|+|+|++.|+||+|+++|++++.++
T Consensus       153 ~~l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~i  220 (300)
T PRK12876        153 AILMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRI  220 (300)
T ss_pred             HHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHH
Confidence            556665542     232111100  111222334456778999999999999999999999999999987543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.3e-26  Score=217.62  Aligned_cols=204  Identities=17%  Similarity=0.205  Sum_probs=140.1

Q ss_pred             HHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccC
Q 020551          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (324)
Q Consensus       100 l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG  179 (324)
                      +|.+++++||.+|+.+.+++..|+++| ++.+  ++.++   +.++......+.+.|.+|||+|+|.|+.|++.+.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~l---~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLFV---VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHHH---HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            478999999999999999999999998 3222  33221   11212233344444566999999999999774332 58


Q ss_pred             cCCHHHHHHHHHHHHH-----HHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHH-HHHHHHHH
Q 020551          180 ELSMGTGIAICAGSAL-----LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVI-LMGLILQI  253 (324)
Q Consensus       180 ~is~~~a~~~~~~~~~-----lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i-~~g~~~~l  253 (324)
                      .++++++....+.+.+     +++.+....+++.+ ....++++.++.||.  ||+|+|++|+.++++.+. .++. ..+
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~-~v~  149 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASG-LVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSP-ALY  149 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHH-HHH
Confidence            8999987554433332     23333333344333 333578889999999  999999999877765433 3332 444


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      |.+.     + ++.  .++..++....+++|+.+++++||+||+|+||++|+||+|+++|+|++.+++.
T Consensus       150 G~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~  210 (282)
T PRK13105        150 GLVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAV  210 (282)
T ss_pred             HHHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHH
Confidence            4432     2 322  23344555566678899999999999999999999999999999999987653

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=3.4e-26  Score=215.68  Aligned_cols=204  Identities=18%  Similarity=0.213  Sum_probs=155.0

Q ss_pred             HHHHHHHHhHccchHHHH---HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--
Q 020551           98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--  172 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~---~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--  172 (324)
                      +++++|++++||+.+...   .++.+.|.+++....+  +...   .++++++..++.+++|++||+.|+|+|+.|+|  
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~~---~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLLL---LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            358899999888866555   4466777766643212  2221   45667888999999999999999999998875  


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHH
Q 020551          173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (324)
Q Consensus       173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~l----g~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g  248 (324)
                      +||+++|++|+++|+.+.+++.++++.+.+.+    ++..+.++ .++++....|+.      +||++.+.+++.|+..+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence            99999999999999999999988888877665    44444444 345556788986      89999999999998888


Q ss_pred             HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI  319 (324)
Q Consensus       249 ~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~  319 (324)
                      .+..+||.+..     |. .++....+++.+...+|+...+++++++|+|+|+++|++|+|+++|++...+
T Consensus       153 ~~~l~gw~Av~-----g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~  217 (294)
T PRK12873        153 FAVLIPWAAAE-----GS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKT  217 (294)
T ss_pred             hHHHHHHHHHh-----CC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHH
Confidence            87778875432     32 2222233333345568999999999999999999999999999999865543

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.1e-25  Score=213.10  Aligned_cols=203  Identities=20%  Similarity=0.178  Sum_probs=140.2

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc-------
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN-------  170 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n-------  170 (324)
                      +++++|++++||+++.....+++.|.++|....+.+++..   .+++++.+.++..++|++|||+|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4589999999999988888888888888742222344432   222233444555667899999999999875       


Q ss_pred             --C--CCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcH----HHHHHHHHHHHHhhhhccCCCCccccccc---Ccch
Q 020551          171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGS----PAVLCAVIAWGLTGAAYSVPLPFLRWKSH---TFMA  239 (324)
Q Consensus       171 --~--p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~----~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~---~~l~  239 (324)
                        |  ++||+++|++|+++++.+.+++.++|+.+++.++.    ..+.+ .+.+.++++.|+.      .||.   | .+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l-~~~~~~~~~~Y~~------~kr~~~~p-~~  151 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVI-MLYSYGIEAFYQV------KKRNQKYP-VA  151 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc------cccccccc-HH
Confidence              3  48999999999999999999888888877665543    22222 2345677788886      2332   3 23


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551          240 PFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI  319 (324)
Q Consensus       240 ~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~  319 (324)
                      .+..++.++.+...++ +     ..|.   .+...++...+.++|+.+++.+||++|+|+|+++|+||+|+++|++++.+
T Consensus       152 ~l~G~~~~~~~~~~g~-~-----~~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~  222 (297)
T PRK12871        152 QLLGRTDFTLFPAAGY-L-----CYGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY  222 (297)
T ss_pred             HHHHHHHHHHHHHHHH-H-----HhCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence            3333344444333332 2     1232   23333444456678999999999999999999999999999999998874


Q ss_pred             e
Q 020551          320 Y  320 (324)
Q Consensus       320 l  320 (324)
                      +
T Consensus       223 ~  223 (297)
T PRK12871        223 W  223 (297)
T ss_pred             H
Confidence            3

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=9.2e-26  Score=212.16  Aligned_cols=208  Identities=22%  Similarity=0.275  Sum_probs=142.3

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccc
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~  177 (324)
                      +-+++++++.|+.+...+..++..+..... .. +...     .+..+++.++.+.++|.+|||+|+|+|+.|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL-LL-GLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HH-cChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            357899999999999888877766542211 11 1111     2344567889999999999999999999999999988


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHhhhhccCCCCcc-cccccCcchhHHHHHHHHHHHHHHH
Q 020551          178 SGELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFL-RWKSHTFMAPFTLVILMGLILQIPY  255 (324)
Q Consensus       178 sG~is~~~a~~~~~~~~~lgl~l-a~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~-rlKr~~~l~~l~v~i~~g~~~~lg~  255 (324)
                      +++...+.+..+..+...+++.+ +...|++.+.++ +++.+++++||.  ||. ++|+.|.++|+++++.||..+.++.
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            44333333332333333333333 223366555443 456778999998  555 6899999999999999986443332


Q ss_pred             HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       256 ~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      +..     .+.  .++...++...+++++.+.+++++|++|+|+|+++|++|+|+++|+|+++++..
T Consensus       152 ~~~-----~~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~  211 (285)
T PRK12872        152 VYY-----YQL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLL  211 (285)
T ss_pred             HHh-----ccc--ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHH
Confidence            221     111  123333333445556678889999999999999999999999999999987653

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=6.9e-25  Score=206.17  Aligned_cols=203  Identities=21%  Similarity=0.233  Sum_probs=130.3

Q ss_pred             HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHH--HHHHHHhhhhcccchhhhhccCCC
Q 020551           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQI--FMNISLCSLNQICDVEIDKINKPY  173 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~-~~~~~l~~~ll~~la~~--l~~~a~~~iNd~~D~e~D~~n~p~  173 (324)
                      .+.++.|+++.||++|..++.+++.|.++|....++ +++..     +++++.+  ..+...|++|||+|+|+|+.|+++
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            457899999999999999999999999999654322 33321     1122222  233455678999999999999876


Q ss_pred             CccccCcCCHHHHH---HH-HHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHH
Q 020551          174 LPLASGELSMGTGI---AI-CAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (324)
Q Consensus       174 Rpl~sG~is~~~a~---~~-~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~  249 (324)
                      +.   |+...++..   .. .++...+++.+.+..+.....+ ++..+++++.||.  ||+|+|++|+.+..+.++. ..
T Consensus        80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~~  152 (282)
T PRK12875         80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-IL  152 (282)
T ss_pred             cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--CCccchhccHHHHHHHHHH-HH
Confidence            54   222222211   11 1223333444444444332222 2456788999999  9999999997554443332 12


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeee
Q 020551          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYI  321 (324)
Q Consensus       250 ~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~  321 (324)
                      +...+++..      .+  +.++..++.  ..++|+.+.+++|+++|+|+|+++|+||+|+++|+|++++++
T Consensus       153 ~~~~~y~~~------tg--~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~  214 (282)
T PRK12875        153 PGVAAYALV------SG--SLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYC  214 (282)
T ss_pred             HHHHHHHHH------cC--CCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHH
Confidence            222333221      12  233333322  235788899999999999999999999999999999998654

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.93  E-value=1.2e-25  Score=206.43  Aligned_cols=189  Identities=28%  Similarity=0.381  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhc--cCCCCccccCcCCHHHHHHHHH
Q 020551          114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICA  191 (324)
Q Consensus       114 ~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~--n~p~Rpl~sG~is~~~a~~~~~  191 (324)
                      .++.+++.|..++..  ...++..   ++..++++++.+.++|.+|||+|+|+|+.  |+|+||+++|+++++++...++
T Consensus         3 ~~~~~~l~~~~~~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~   77 (257)
T PF01040_consen    3 LSFLPVLAGLALASG--GPFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL   77 (257)
T ss_pred             HHHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence            445566666444432  2333322   34455667799999999999999999999  8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCh
Q 020551          192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVT  271 (324)
Q Consensus       192 ~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~  271 (324)
                      ++.++++++++..+++.+.+. +++.+.+++||   ||+|+||+++++++++++.++..+.+++++.      ++.  .+
T Consensus        78 ~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~  145 (257)
T PF01040_consen   78 ILLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GGD--PP  145 (257)
T ss_pred             HHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CCc--cc
Confidence            999999998888887766554 45666779999   6889999998899999988886666665432      221  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551          272 GPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI  319 (324)
Q Consensus       272 ~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~  319 (324)
                      ...+....+.+++.......+|++|+|+|+++|+||+|+++|++++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            233333334456667778888999999999999999999999999875

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=3e-24  Score=202.37  Aligned_cols=161  Identities=24%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccC
Q 020551          146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV  225 (324)
Q Consensus       146 la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~  225 (324)
                      +++.+...++|++|||+|+|+|++|+|+||.+    +++.+..++++..++|+++++..|++.  ++ +++.+.+++||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhcC
Confidence            34567888999999999999999999999986    788899999999999999999888542  33 457778999997


Q ss_pred             C----CCcccccccCcchhHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhH
Q 020551          226 P----LPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDK  301 (324)
Q Consensus       226 ~----lpP~rlKr~~~l~~l~v~i~~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~  301 (324)
                      +    +.|+|+|+++.+||+++++.||..+..+.  .  .. .+   .+ ........+.....++++.+||++|+|||+
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~--g--~~-~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr  208 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA--G--SY-CG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDT  208 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH--H--hh-hh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence            4    23558999999999999999996332211  0  00 01   01 111111111112235667899999999999


Q ss_pred             HcCCcccceeecccceeeeee
Q 020551          302 AFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       302 ~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      +.|++|+|+++|+++++++..
T Consensus       209 ~~G~kTLPV~lG~~~A~~l~~  229 (307)
T PRK13591        209 LAGIKTLPVSLGEQKTRNLLL  229 (307)
T ss_pred             HcCCeeEEEEECHHHHHHHHH
Confidence            999999999999999987643

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.91  E-value=5.4e-24  Score=199.18  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 020551          139 LGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL  218 (324)
Q Consensus       139 ~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~  218 (324)
                      .+.+++++.+++..+++|++|||+|+|+|++|+|+||+|||++|+++++.+++++.++++.++...     ... +...+
T Consensus        46 ~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~~  119 (299)
T PRK13592         46 IQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWFL  119 (299)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHH
Confidence            346667777888999999999999999999999999999999999999999988877777665443     111 12333


Q ss_pred             hhhhc-----cCCCCcccccccCcchhHHHHHHHHHHHHHH--HHHH-hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHH
Q 020551          219 TGAAY-----SVPLPFLRWKSHTFMAPFTLVILMGLILQIP--YFIH-SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGL  290 (324)
Q Consensus       219 l~~~Y-----s~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg--~~~~-~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~  290 (324)
                      ..+.|     +.     ++|+.++.||+.++...|.++..|  ++.. ......|.+. .....+.+.+..++.+.++|+
T Consensus       120 i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI  193 (299)
T PRK13592        120 FLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEV  193 (299)
T ss_pred             HHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHH
Confidence            45556     76     689999999999988777555433  2211 0001122211 111112222333355789999


Q ss_pred             HhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          291 LKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       291 ~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      .+|++| |||++ |.+|+|+++|.|++.+++.
T Consensus       194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~  223 (299)
T PRK13592        194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIE  223 (299)
T ss_pred             HHhhcC-Ccccc-CCeeechhccchhHHHHHH
Confidence            999999 88886 5999999999999887654

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.6e-22  Score=187.41  Aligned_cols=206  Identities=15%  Similarity=0.128  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--C
Q 020551           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (324)
Q Consensus        96 ~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~  173 (324)
                      .+.++|+|+++++|.......++.+.|+++|..  +..++..   ++++.++..+..++++++|+|+|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            457899999999999999999999999999975  2234332   45677889999999999999999999999987  8


Q ss_pred             CccccCcCCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551          174 LPLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ  252 (324)
Q Consensus       174 Rpl~sG~is~~~a~~~~~~~~~lgl~la-~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~  252 (324)
                      ||+++|++++++++.+++++.++|+.+. +..|+....+++...++-.+.||.+     +||++....+..++..+.|..
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~NiviGg~aGa~Ppl  163 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQNIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCcccceeeeecccccccc
Confidence            9999999999999999999999998876 6777665555444445667899984     799997555555666667888


Q ss_pred             HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceee
Q 020551          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSI  319 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~  319 (324)
                      +||.++.     |. .  +...+++.+.+++|+-..-..-.++-.|+-+++|+..+|++-|++.+++
T Consensus       164 iGwaAvt-----g~-~--~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~  222 (304)
T COG0109         164 IGWAAVT-----GS-I--SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKR  222 (304)
T ss_pred             ceeeeee-----CC-C--CchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHH
Confidence            8876542     32 2  2233334445567764333333344455568999999999999998865

>PLN02776 prenyltransferase

Probab=99.88  E-value=2e-21  Score=186.13  Aligned_cols=188  Identities=14%  Similarity=0.066  Sum_probs=141.0

Q ss_pred             hHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCccccCcCCH
Q 020551          106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM  183 (324)
Q Consensus       106 l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rpl~sG~is~  183 (324)
                      ++||......+++.+.|+++|.+...  ++..   +++..++++++.+++|++||++|+|+|+.|+|  +||+++|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~~---l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLPG---LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            46888888889999999999854322  2221   34567889999999999999999999999774  99999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHH-HHHHHHHHHHhhh
Q 020551          184 GTGIAICAGSALLSLA-LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIPYFIHSQT  261 (324)
Q Consensus       184 ~~a~~~~~~~~~lgl~-la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g-~~~~lg~~~~~~~  261 (324)
                      ++++.+++++.++|+. +++.+|+..+.++.+..++....|+.      +||++++ |.++|...| ++..+||.++.  
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avt--  146 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAAS--  146 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHHc--
Confidence            9999999998888884 45667876655543222333568986      8999976 566666666 67778876542  


Q ss_pred             hhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeec
Q 020551          262 YLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG  313 (324)
Q Consensus       262 ~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG  313 (324)
                         | .  +++..+++...+.+|+........+.|+|+|+++|++++|+.-+
T Consensus       147 ---g-~--~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~  192 (341)
T PLN02776        147 ---G-Q--LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADA  192 (341)
T ss_pred             ---C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCcccc
Confidence               2 2  23334445556678988777777788888999999999999763

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.86  E-value=2.7e-20  Score=175.93  Aligned_cols=149  Identities=23%  Similarity=0.227  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc--CCCC
Q 020551           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYL  174 (324)
Q Consensus        97 ~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n--~p~R  174 (324)
                      ++++++|++++||+.|+...+.+. +.+++... .+..  .+...++++++..++.+++|++||++|+|+|+.|  ||+|
T Consensus         8 ~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          8 KNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            457899999999999999887544 34444221 1111  1112455666777888999999999999999997  6799


Q ss_pred             ccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHHHH
Q 020551          175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (324)
Q Consensus       175 pl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~lg  254 (324)
                      |+++|++++++++.++.++.++|+.+++.+++..+.+ .+..++..++||.     ++|+++++++++++..++..+..|
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G  157 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAG  157 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888888765444 3456777889997     689999989998887666555555


Q ss_pred             H
Q 020551          255 Y  255 (324)
Q Consensus       255 ~  255 (324)
                      .
T Consensus       158 ~  158 (295)
T PRK12324        158 G  158 (295)
T ss_pred             H
Confidence            4

>PRK08238 hypothetical protein; Validated

Probab=99.84  E-value=9e-20  Score=182.91  Aligned_cols=190  Identities=22%  Similarity=0.238  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhcc--CC
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KP  172 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n--~p  172 (324)
                      +.+.++++|++++||+.|+..++.++ +.+.+.. ..+.  ..+...++++++..++.+++|++||++|+|+|+.|  ++
T Consensus       186 ~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~~--~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~  261 (479)
T PRK08238        186 PRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGDL--QALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKR  261 (479)
T ss_pred             CCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Confidence            34457899999999999999988644 6666532 2222  22223556777888999999999999999999999  57


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHHHH
Q 020551          173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ  252 (324)
Q Consensus       173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~~~  252 (324)
                      +||+++|++|+++++.++.+++++|+.+++.+++..+ +.++..+++.++||.     ++||+++++++++++.+++.+.
T Consensus       262 ~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~  335 (479)
T PRK08238        262 RRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRII  335 (479)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHH
Confidence            9999999999999999999999999999988887443 333566777889997     6999999999999887776666


Q ss_pred             HHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCC
Q 020551          253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM  305 (324)
Q Consensus       253 lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~  305 (324)
                      .|+.+.      +  .  +.+.|++. +..++.....+.+...|.++++..|.
T Consensus       336 ~G~~a~------~--~--~~s~wll~-~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        336 AGAAAI------G--V--ALSFWLLA-FSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHh------c--c--CHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            665431      2  1  22223322 22233455678888899988888775

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.79  E-value=8e-20  Score=166.70  Aligned_cols=206  Identities=15%  Similarity=0.184  Sum_probs=147.9

Q ss_pred             HHHHHHHHhHccchHHHHHH---HHHHHHHHhhc--cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC
Q 020551           98 RKLNAISHVTRYYAQINIIV---SVTSVCFLPVQ--SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~---~~~~g~~lA~~--~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p  172 (324)
                      .+++.|.+++|.+..+.+.+   +.....++|..  ..+++.   .++  +.-++.+++..++|.+||..|+|+|+..++
T Consensus        62 ~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~---mL~--LFG~GAllMRgAGCtINDlwDkdlD~KVeR  136 (353)
T KOG1381|consen   62 KRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIK---MLA--LFGVGALLMRGAGCTINDLWDKDLDAKVER  136 (353)
T ss_pred             ccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhH---HHH--HhcccHHHhccCCceehhhhhhhhhhhHhh
Confidence            45899999999886655533   44455555532  222222   111  223578899999999999999999998765


Q ss_pred             --CCccccCcCCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHHHHHH
Q 020551          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (324)
Q Consensus       173 --~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~~g~~  250 (324)
                        .||+++|++|++++..+....+.+|+.+-..+++....++ ..++...+.|+.      +||.+++.+++.++.+..-
T Consensus       137 tklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLgltfnwG  209 (353)
T KOG1381|consen  137 TKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLGLTFNWG  209 (353)
T ss_pred             hcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHhhhcchh
Confidence              7999999999999999888888888888778887665443 356667788987      8999999988876544433


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeecccceeeeee
Q 020551          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVSIYII  322 (324)
Q Consensus       251 ~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~~l~~  322 (324)
                      ..+||-+     +-|. . .+...+-+++--..|++..+.++..+|.++|.++|+|+.+.++|+++..|++.
T Consensus       210 AllGw~A-----~~g~-~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g  274 (353)
T KOG1381|consen  210 ALLGWCA-----LKGS-L-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG  274 (353)
T ss_pred             hhhcchh-----hcCc-c-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh
Confidence            4455432     2232 1 12122222222236888899999999999999999999999999999888753

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.35  E-value=4.2e-13  Score=125.62  Aligned_cols=191  Identities=16%  Similarity=0.159  Sum_probs=129.8

Q ss_pred             HHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhccCC--CCc
Q 020551           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (324)
Q Consensus        98 ~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~e~D~~n~p--~Rp  175 (324)
                      ..++.|+|+++|.-....+++...|+++|.+.. +++     ++++..++..+..++.|.+||+++.+.|..+++  +||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            467899999999988888888889999986542 333     245667888999999999999999999999876  899


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHhhhhccCCCCcccccccCcchhHHHH-HHHHHHHHH
Q 020551          176 LASGELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV-ILMGLILQI  253 (324)
Q Consensus       176 l~sG~is~~~a~~~~~~~~~lgl~l-a~~lg~~~l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~-i~~g~~~~l  253 (324)
                      +++|++++..|+.++.+....|..+ ++-.++....++..=.++.+..|+-      +||... .|-.+| ++.+++..+
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLM  238 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccc
Confidence            9999999999999988887777654 3446655433332112334567775      898774 444443 344567778


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHH--HHHHHhccCChHHhHHcCCccccee
Q 020551          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF--VNGLLKDLPDVEGDKAFGMQTLCVL  311 (324)
Q Consensus       254 g~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~--~~~~~~di~D~egD~~~G~rTlpv~  311 (324)
                      ||-+..     |.  ..+..+++ ......|.+  ...+..++||  +-.++|.+.+++.
T Consensus       239 GwAAas-----g~--l~~ga~iL-a~~LyaWQfPHFnaLS~~lR~--DYs~~GY~Mma~~  288 (409)
T KOG1380|consen  239 GWAAAS-----GL--LDPGAMIL-AGILYAWQFPHFNALSWNLRN--DYSKAGYRMMAVT  288 (409)
T ss_pred             hhhhhc-----cC--CCccHHHH-HHHHHHhcccchhhhhhhhch--hhhhccEEEEEee
Confidence            875542     21  11223333 333345653  3344555543  3478999988764

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.31  E-value=2.8e-13  Score=121.55  Aligned_cols=212  Identities=14%  Similarity=0.062  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHhHccchHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhcccch--hhhhccCC
Q 020551           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKINKP  172 (324)
Q Consensus        95 ~~~~~l~~~l~l~Rp~~~~~~~~~~~~g~~lA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNd~~D~--e~D~~n~p  172 (324)
                      ...++.+.|+...||+..-.+..++.+|.++|+.....-++.+.. +.+..++++..|.++|..|.|+|.  .+|+....
T Consensus        56 g~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~-~fl~a~avlavh~agnlvntyfdf~kgid~kkad  134 (359)
T KOG4581|consen   56 GTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLAT-FFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD  134 (359)
T ss_pred             hHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHH-HHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence            346789999999999999999999999999997543322333322 344556778889999999999997  58887777


Q ss_pred             CCccccCcCCHHHHHHHHHHHHHHHHHH---HHHHcHHH---HHHHHHHHHHhhhhccCCCCcccccccCcchhHHHHHH
Q 020551          173 YLPLASGELSMGTGIAICAGSALLSLAL---AFLSGSPA---VLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL  246 (324)
Q Consensus       173 ~Rpl~sG~is~~~a~~~~~~~~~lgl~l---a~~lg~~~---l~l~ll~~~~l~~~Ys~~lpP~rlKr~~~l~~l~v~i~  246 (324)
                      +|.+++..+.+.++..++.++..+|...   -..+.+..   +.+..+.++-..++|+.+   +.+|+.. +|.+++.+.
T Consensus       135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyia-lgdliili~  210 (359)
T KOG4581|consen  135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIA-LGDLIILIL  210 (359)
T ss_pred             chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEe-ccCEEEEEe
Confidence            9999999999999888877766655332   22333321   111113345566899974   5788877 587777666


Q ss_pred             HHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCChHHhHHcCCcccceeeccccee
Q 020551          247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVS  318 (324)
Q Consensus       247 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~l~~~~~~~l~~~~~~~~~di~D~egD~~~G~rTlpv~lG~k~a~  318 (324)
                      +|...++=.|+. ++   |. ..|.+  +...+...+-+-++.+.|+-||.|.||++|+-|+++.+|+..+.
T Consensus       211 fgpiavlfaf~~-q~---g~-l~~~~--l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~  275 (359)
T KOG4581|consen  211 FGPIAVLFAFAI-QT---GH-LAIFP--LGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASH  275 (359)
T ss_pred             echHHHHHHHHH-hc---Cc-eeEEe--ehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHH
Confidence            775333322221 11   22 22211  11112223445667889999999999999999999999987654

>PRK13591 ubiA prenyltransferase; Provisional

Probab=95.29  E-value=0.55  Score=45.06  Aligned_cols=66  Identities=24%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             hhhcccchhhhhccCC-CCccccCcCCHHHHHHHHHHHHH---HHHHHHHHHcHH---H--HHHHHHHHHHhhhhccC
Q 020551          157 SLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSAL---LSLALAFLSGSP---A--VLCAVIAWGLTGAAYSV  225 (324)
Q Consensus       157 ~iNd~~D~e~D~~n~p-~Rpl~sG~is~~~a~~~~~~~~~---lgl~la~~lg~~---~--l~l~ll~~~~l~~~Ys~  225 (324)
                      .+||+.|.|.|+.+.. .-|+.=|+   +.+..+...+.+   +.++++...|..   +  .+..++.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            7899999999998765 44554443   333333322222   222223333321   2  22234567777888997

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.99  E-value=2.2  Score=40.85  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=24.9

Q ss_pred             HHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHHHHH
Q 020551          150 FMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAI  189 (324)
Q Consensus       150 l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a~~~  189 (324)
                      +........||+-|+|+|+.+.++ -++   ++.++.+..+
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l  222 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL  222 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence            455677789999999999988663 333   3334444444

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.63  E-value=2.3  Score=40.65  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHH
Q 020551          143 KAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAI  189 (324)
Q Consensus       143 l~~la~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~  189 (324)
                      +..+.+.+..+..+..|+..|.|+|+.|+++.+.+  ++..+.+..+
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            33455566677788999999999999998754433  3344444444

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=91.09  E-value=1.3  Score=42.59  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHHHHHHHHHH
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAICAGSA  194 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a~~~~~~~~  194 (324)
                      .+...+........||+.|+|+|+.+.++ -|+   ++.++.+..+...+.
T Consensus       195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~  242 (317)
T PRK13387        195 SLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF  242 (317)
T ss_pred             HHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence            34445566677899999999999988653 333   344455554443333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=90.62  E-value=2.2  Score=39.94  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       147 a~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      ..++.......+||.-|+|.|+.++ +.-|..-|+
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            3345556667899999999999765 455554454

>PLN02922 prenyltransferase

Probab=89.55  E-value=2  Score=41.36  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=26.9

Q ss_pred             HHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHH
Q 020551          148 QIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICA  191 (324)
Q Consensus       148 ~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~  191 (324)
                      ..+........||+.|+|+|+.+.++...+  ++.++.+..+..
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~  238 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVR  238 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHH
Confidence            335556778999999999999987643222  333444444433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=89.21  E-value=4.9  Score=37.82  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~  180 (324)
                      +++.++.+.+-..+|++.|+|.|+.. .+.-|+.-|+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            45566667778899999999999975 4566666664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=89.06  E-value=16  Score=34.62  Aligned_cols=51  Identities=22%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhhhhcccchhhhhccC-CCCccccCcCCHHHHHHHHHHHHHHHHH
Q 020551          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLA  199 (324)
Q Consensus       146 la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~is~~~a~~~~~~~~~lgl~  199 (324)
                      ++..+...+...+|++.|+|.|+..+ +.-|.   ++.++.+..+..++..++..
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHH
Confidence            34456667778999999999999754 33343   34455555555555444433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=89.00  E-value=5.8  Score=37.59  Aligned_cols=44  Identities=11%  Similarity=-0.056  Sum_probs=28.5

Q ss_pred             HHHHHHHhhhhcccchhhhhccCCC-CccccCcCCHHHHHHHHHHHHH
Q 020551          149 IFMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAICAGSAL  195 (324)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n~p~-Rpl~sG~is~~~a~~~~~~~~~  195 (324)
                      .+........||.-|+|+|+.+.++ -++   ++.++.+..+...+..
T Consensus       171 gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~  215 (285)
T TIGR02235       171 GLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVIS  215 (285)
T ss_pred             HHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHH
Confidence            3556678899999999999987653 333   3445555554443333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN00012 chlorophyll synthetase; Provisional

Probab=88.61  E-value=6.5  Score=38.82  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551          148 QIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (324)
Q Consensus       148 ~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~  180 (324)
                      .++...+....||+-|+|.|+.. ++.-|+.-|.
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            34555668889999999999865 4566665554

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=87.62  E-value=8.2  Score=36.33  Aligned_cols=44  Identities=20%  Similarity=0.139  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhhhhcccchhhhhccCC-CCccccCcCCHHHHHHHHHHH
Q 020551          147 AQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGS  193 (324)
Q Consensus       147 a~~l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~is~~~a~~~~~~~  193 (324)
                      ...+........||+.|+|.|+.+.. .-|+   ++.++.+..+...+
T Consensus       176 ~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l  220 (293)
T PRK06080        176 PCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAAL  220 (293)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHH
Confidence            34455666778999999999998754 3333   33344444443333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=87.59  E-value=3.6  Score=39.04  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHc
Q 020551          147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG  205 (324)
Q Consensus       147 a~~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~~~lgl~la~~lg  205 (324)
                      +..+...+...+||+-|.|.|+.+..+ .++. ++.++.+..+...+.+++.++....+
T Consensus       168 ~~~~~~~a~~ii~~irDie~Dr~~G~~-Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        168 AFFLWGMASHAFGAVQDVVADREAGIA-SIAT-VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHhCcchHhHHHcCCc-cchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344446778899999999999987542 2221 45667777776666666655443444

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=87.44  E-value=7.4  Score=36.61  Aligned_cols=36  Identities=17%  Similarity=0.097  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      .+..++.+..-...|++.|+|.|+.+. +.-|+.-|.
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            445566667777899999999999764 455655554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=87.01  E-value=6.7  Score=36.81  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      .+..++.+..-..+||..|+|.|+..+ +.-|+.-|+
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            344556666777899999999997654 566665563

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=86.10  E-value=10  Score=35.93  Aligned_cols=43  Identities=12%  Similarity=0.052  Sum_probs=27.1

Q ss_pred             HHHHHHHhhhhcccchhhhhccCCCCccccCcCCHHHHHHHHHHH
Q 020551          149 IFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGS  193 (324)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n~p~Rpl~sG~is~~~a~~~~~~~  193 (324)
                      .+........||..|+|+|+.+.++...  -++.++.+..+...+
T Consensus       174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~--v~lG~~~a~~l~~~l  216 (284)
T TIGR00751       174 GLLACAVLNINNLRDIPTDARAGKNTLA--VRLGDARTRMYHQGL  216 (284)
T ss_pred             HHHHHHHHHHcCcccchhHHHcCCEeeh--hhcchHhHHHHHHHH
Confidence            3445667789999999999987653221  134455555544333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=84.74  E-value=6.9  Score=37.50  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=20.4

Q ss_pred             HHHHHHHHHhhhhcccchhhhhccCC
Q 020551          147 AQIFMNISLCSLNQICDVEIDKINKP  172 (324)
Q Consensus       147 a~~l~~~a~~~iNd~~D~e~D~~n~p  172 (324)
                      ..++...+...+||+.|+|.|+.+..
T Consensus       190 ~~~~~~~~~~l~~di~D~egD~~~Gi  215 (308)
T PRK12887        190 FVLVFTFAIAIFKDIPDMEGDRQYQI  215 (308)
T ss_pred             HHHHHHHHHHHHHhccchhhHHHcCC
Confidence            44456667778999999999998754

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=84.40  E-value=17  Score=34.38  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      .+...+.+.+-..+|++.|+|.|+... +.-|+.-|.
T Consensus       165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            345566677788999999999998654 455554454

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=84.10  E-value=5.6  Score=37.97  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             HHHHHHHhhhhcccchhhhhccCC-CCccccC
Q 020551          149 IFMNISLCSLNQICDVEIDKINKP-YLPLASG  179 (324)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG  179 (324)
                      .+...+....||+.|+|.|+.+.. .-|+.-|
T Consensus       193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG  224 (306)
T TIGR02056       193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG  224 (306)
T ss_pred             HHHHHHHHHHHHccChHHHHHcCCcCcchhcC
Confidence            345567779999999999997643 4454444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=83.93  E-value=5.4  Score=38.22  Aligned_cols=30  Identities=30%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             HHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551          151 MNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (324)
Q Consensus       151 ~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~  180 (324)
                      ...+....||+.|+|.|+.. ++.-|+.-|+
T Consensus       201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            34556789999999999876 4455665554

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=82.98  E-value=16  Score=34.77  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       146 la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      +..++.+..-...||+.|+|.|+.++ +.-|+.-|+
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~  217 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM  217 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence            45566677788999999999998764 566766665

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=82.90  E-value=20  Score=33.70  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       144 ~~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      .++..++-+..-...|++.|+|.|+..+ +.-|+.-|.
T Consensus       167 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  204 (282)
T PRK12848        167 LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR  204 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence            3455666677777899999999999764 556665555

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=82.58  E-value=4.6  Score=39.14  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhhhcccchhhhhccCC-CCccccCc
Q 020551          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE  180 (324)
Q Consensus       146 la~~l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~  180 (324)
                      +..++...+...+||+.|+|.|+.... .-|+.=|+
T Consensus       187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            344566677778999999999997643 44554443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=82.34  E-value=7.1  Score=36.64  Aligned_cols=31  Identities=26%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             HHHHHHhhhhcccchhhhhccCC-CCccccCc
Q 020551          150 FMNISLCSLNQICDVEIDKINKP-YLPLASGE  180 (324)
Q Consensus       150 l~~~a~~~iNd~~D~e~D~~n~p-~Rpl~sG~  180 (324)
                      +...+....||+.|+|.|+.+.. .-|+.-|+
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            34455678999999999998643 45554444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=82.32  E-value=6.7  Score=36.59  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       147 a~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      ..++.+...+..||+.|+|.|+.+. +.-|+.-|+
T Consensus       163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~  197 (279)
T PRK12884        163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence            3455566678899999999998764 455554444

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=81.34  E-value=13  Score=34.72  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhhhcccchhhhhccC-CCCccccCc
Q 020551          147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (324)
Q Consensus       147 a~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~  180 (324)
                      ..++...+-..+||+.|.|.|+.++ +.-|+.-|+
T Consensus       165 ~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~  199 (276)
T PRK12882        165 LAALATLAREIIKDVEDIEGDRAEGARTLPILIGV  199 (276)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence            3445566778999999999999764 455554444

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=81.02  E-value=6.7  Score=37.23  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~  180 (324)
                      .+..++.+.+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus       168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            34445555566678889999999854 4666766665

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=80.91  E-value=20  Score=33.99  Aligned_cols=37  Identities=16%  Similarity=0.134  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhccC-CCCccccCcC
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL  181 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n~-p~Rpl~sG~i  181 (324)
                      .+..++.+.+-..+|++.|+|.|+... +.-|+.-|+-
T Consensus       172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~  209 (290)
T PRK12870        172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY  209 (290)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence            456677778888999999999998754 4555544543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=80.37  E-value=22  Score=33.70  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhhhcccchhhhhcc-CCCCccccCc
Q 020551          145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (324)
Q Consensus       145 ~la~~l~~~a~~~iNd~~D~e~D~~n-~p~Rpl~sG~  180 (324)
                      .+..++.+.+-..+|++.|+|.|+.. .|.-|+.-|.
T Consensus       173 ~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        173 ALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            34556777777899999999999764 4566665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00