Citrus Sinensis ID: 020557

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQY
cccccccccHHHHHHHHHHHccccccccccccccHHcccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEccccccccccccccccccEEEEcccccccccccHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccc
ccHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHcccccHHHHHHHHHHccccccHHHccccccccccccccHHHHccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEEEEccEccHHHHHHHHHHccccEEEccccccccccccEEEccccccHHHHccHHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHEEEEEEcccccHHHHHHHHHHHHcccccccccEcccHHHHHHHHHHHHHccccccccccc
masscsftsplCTWLVAACMsftcgsrdphqppsvlrrytnnkREGLSAARRRKLSAkcgvggevvngslvssfsgsshSIQSLMAsclpfepcneyyssvsslgffgdngfssffgsnnstatLNRRQRRLRLNRVTRSGEAMAvavqpdeevttkkkphmkqkRVVVTGMglvsplghepdvfYNNLlegvsgiseietfdctsfpTKIAAEIKSfstdgwvapklsKRMDKFMLYLLTAGKKaladggitEDVMNEldkskcgvligsglggmKVFYDAIEALRISYKkmnpfcvpfattnmgSAMLAMDLVSlnllfpqy
masscsftspLCTWLVAACMSFTCgsrdphqppsvlrrytnnkREGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFgsnnstatlnrrqrrlrlnrvtrsgeamavavqpdeevttkkkphmkqkrvVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEiksfstdgwvapKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQY
MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGslvssfsgsshsiqsLMASCLPFEPCNEYYSSVsslgffgdngfssffgsnnsTATlnrrqrrlrlnrVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQY
******FTSPLCTWLVAACMSFTCG********************************KCGVGGEVVNGSLVS*******SIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFG************************************************RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLF***
*********PLCTWLVAACMS*********************************************************HSIQSLMASCLPFEPCNE*********************************************************************RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQY
********SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGSLVS*********QSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPD************QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQY
*******TSPLCTWLVAACMSFT*******************************************NGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN*********************EAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQ*
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SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFPQY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query324 2.2.26 [Sep-21-2011]
Q9C9P4 541 3-oxoacyl-[acyl-carrier-p yes no 0.858 0.513 0.598 7e-96
P52410 473 3-oxoacyl-[acyl-carrier-p no no 0.518 0.355 0.436 1e-37
P23902 462 3-oxoacyl-[acyl-carrier-p N/A no 0.487 0.341 0.439 8e-35
O34340 413 3-oxoacyl-[acyl-carrier-p yes no 0.462 0.363 0.357 3e-23
Q83E37 414 3-oxoacyl-[acyl-carrier-p yes no 0.478 0.374 0.378 4e-23
Q9KQH9 414 3-oxoacyl-[acyl-carrier-p yes no 0.435 0.340 0.4 4e-23
P55338 415 3-oxoacyl-[acyl-carrier-p yes no 0.456 0.356 0.388 3e-22
Q8NXE1 414 3-oxoacyl-[acyl-carrier-p yes no 0.459 0.359 0.346 6e-22
Q6GAU2 414 3-oxoacyl-[acyl-carrier-p yes no 0.459 0.359 0.346 6e-22
Q5HHA1 414 3-oxoacyl-[acyl-carrier-p yes no 0.459 0.359 0.346 6e-22
>sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1 Back     alignment and function desciption
 Score =  350 bits (899), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 188/314 (59%), Positives = 222/314 (70%), Gaps = 36/314 (11%)

Query: 1   MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
           + +S S+ SPLCTW VAACMS + G  D  Q  ++     + +R  LS         KC 
Sbjct: 2   VGASSSYASPLCTWFVAACMSVSHGGGDSRQAVALQSGGRSRRRRQLS---------KCS 52

Query: 61  VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
           V             SGS+ SIQ+L+ SCL F PC  Y +         +N  SS FGSN 
Sbjct: 53  VA------------SGSA-SIQALVTSCLDFGPCTHYNN---------NNALSSLFGSN- 89

Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
            + +LNR QRRL  NR   SG AMAV ++ ++E    KKP  +Q+RVVVTGMG+ + LGH
Sbjct: 90  -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGH 145

Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
           +P  FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 146 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 205

Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
           TAGKKALADGG+T++VM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 206 TAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 265

Query: 301 ATTNMGSAMLAMDL 314
           ATTNMGSAMLAMDL
Sbjct: 266 ATTNMGSAMLAMDL 279
Essential protein that catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-16 and C-16 to unsaturated C-18 fatty acids. Confers resistance to low temperatures by maintaining chloroplast membranes integrity. Involved in the regulation of fatty acids ratios during seed metabolism. Required for embryo development, especially at the transition from the globular to the heart stage.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1
>sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2 Back     alignment and function description
>sp|P23902|KASC1_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1 Back     alignment and function description
>sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 Back     alignment and function description
>sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 Back     alignment and function description
>sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 Back     alignment and function description
>sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 Back     alignment and function description
>sp|Q8NXE1|FABF_STAAW 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MW2) GN=fabF PE=1 SV=1 Back     alignment and function description
>sp|Q6GAU2|FABF_STAAS 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MSSA476) GN=fabF PE=3 SV=1 Back     alignment and function description
>sp|Q5HHA1|FABF_STAAC 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain COL) GN=fabF PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
346995771 573 beta-ketoacyl-ACP synthase II [Jatropha 0.904 0.511 0.647 1e-110
300507129 576 KASII [Gossypium hirsutum] 0.956 0.538 0.694 1e-110
225444641 555 PREDICTED: 3-oxoacyl-[acyl-carrier-prote 0.888 0.518 0.668 1e-108
255550355 554 46 kDa ketoavyl-ACP synthase [Ricinus co 0.901 0.527 0.636 3e-98
1698690 540 beta-ketoacyl-ACP synthase II [Cuphea wr 0.824 0.494 0.668 4e-98
297742964 546 unnamed protein product [Vitis vinifera] 0.851 0.505 0.639 3e-96
210110425 548 beta-ketoacyl-ACP synthase II-1 [Arachis 0.873 0.516 0.629 5e-96
297738522 517 unnamed protein product [Vitis vinifera] 0.777 0.487 0.624 7e-96
297842241 543 hypothetical protein ARALYDRAFT_476635 [ 0.864 0.515 0.601 1e-95
359482462 600 PREDICTED: 3-oxoacyl-[acyl-carrier-prote 0.904 0.488 0.596 2e-95
>gi|346995771|gb|ABJ90469.2| beta-ketoacyl-ACP synthase II [Jatropha curcas] Back     alignment and taxonomy information
 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/332 (64%), Positives = 244/332 (73%), Gaps = 39/332 (11%)

Query: 1   MASSCSFTSPLCTWLVAACMSFTCGSRD---PH-----QPPSVLRRYTNNKREGLSAARR 52
           M  S SF SPLCTWLVAACMS TC   +   PH     QP + L R+   +R+ L A   
Sbjct: 1   MMGSASFASPLCTWLVAACMSVTCAKENRTAPHAFHSSQPSNRLSRWAR-RRKTLHAQYN 59

Query: 53  RKLSAKCGV----------GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVS 102
              S                 E ++ SLVS+  GSS   Q LM+SCL FEPC++YYSS  
Sbjct: 60  SDSSNSIAAGGGGGGGGGYSTEFLSNSLVSTLCGSS--FQGLMSSCLAFEPCSQYYSS-- 115

Query: 103 SLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHM 162
                  NG    F S N    LNR+QRRL  NR+  SGEAMA+AVQP++EV TKKKP  
Sbjct: 116 -------NGL---FRSRN----LNRKQRRL--NRLALSGEAMAIAVQPEKEVATKKKPAT 159

Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
           KQ+RVVVTGMG+VSPLGHEPDVFYNNLLEGVSGIS+IE F+C  FPT+IA EIKSFSTDG
Sbjct: 160 KQRRVVVTGMGVVSPLGHEPDVFYNNLLEGVSGISQIEAFECAQFPTRIAGEIKSFSTDG 219

Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
           W+APKLSKRMDKFMLY+LTAGKKALADGGITED+M+ELDK+KCGVLIGS +GGMKVF DA
Sbjct: 220 WIAPKLSKRMDKFMLYMLTAGKKALADGGITEDIMDELDKAKCGVLIGSAMGGMKVFNDA 279

Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314
           IEALR+SY+KMNPFCVPFATTNMGSAMLAMDL
Sbjct: 280 IEALRVSYRKMNPFCVPFATTNMGSAMLAMDL 311

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300507129|gb|ADK23940.1| KASII [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|225444641|ref|XP_002276214.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255550355|ref|XP_002516228.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] gi|223544714|gb|EEF46230.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|1698690|gb|AAB37271.1| beta-ketoacyl-ACP synthase II [Cuphea wrightii] Back     alignment and taxonomy information
>gi|297742964|emb|CBI35831.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|210110425|gb|ACJ07142.1| beta-ketoacyl-ACP synthase II-1 [Arachis hypogaea] Back     alignment and taxonomy information
>gi|297738522|emb|CBI27767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297842241|ref|XP_002889002.1| hypothetical protein ARALYDRAFT_476635 [Arabidopsis lyrata subsp. lyrata] gi|297334843|gb|EFH65261.1| hypothetical protein ARALYDRAFT_476635 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359482462|ref|XP_002272201.2| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
TAIR|locus:2027252 541 FAB1 "fatty acid biosynthesis 0.537 0.321 0.771 1.1e-78
TIGR_CMR|CHY_1445 412 CHY_1445 "3-oxoacyl-(acyl-carr 0.447 0.351 0.382 2e-24
UNIPROTKB|Q71XG4 413 fabF "3-oxoacyl-[acyl-carrier- 0.456 0.358 0.342 1.9e-23
UNIPROTKB|Q9KQH9 414 fabF "3-oxoacyl-[acyl-carrier- 0.456 0.357 0.388 5.9e-23
TIGR_CMR|VC_2019 414 VC_2019 "3-oxoacyl-(acyl-carri 0.456 0.357 0.388 5.9e-23
TIGR_CMR|CBU_0497 414 CBU_0497 "3-oxoacyl-acyl carri 0.478 0.374 0.378 9.9e-23
TIGR_CMR|DET_0963 422 DET_0963 "3-oxoacyl-[acyl-carr 0.456 0.350 0.348 7.3e-22
UNIPROTKB|Q81JF9 412 fabF "3-oxoacyl-[acyl-carrier- 0.456 0.359 0.342 1.1e-21
TIGR_CMR|BA_1185 412 BA_1185 "3-oxoacyl-(acyl-carri 0.456 0.359 0.342 1.1e-21
TIGR_CMR|SO_2774 412 SO_2774 "3-oxoacyl-(acyl-carri 0.456 0.359 0.355 6.7e-21
TAIR|locus:2027252 FAB1 "fatty acid biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 706 (253.6 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
 Identities = 135/175 (77%), Positives = 154/175 (88%)

Query:   140 SGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI 199
             SG AMAV ++ ++E    KKP  +Q+RVVVTGMG+ + LGH+P  FY NLL+G SGIS+I
Sbjct:   106 SGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGHDPHTFYENLLQGNSGISQI 164

Query:   200 ETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNE 259
             E FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLLTAGKKALADGG+T++VM E
Sbjct:   165 ENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLLTAGKKALADGGVTDEVMAE 224

Query:   260 LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314
              DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL
Sbjct:   225 FDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 279
GO:0003824 "catalytic activity" evidence=IEA
GO:0004312 "fatty acid synthase activity" evidence=ISS
GO:0006633 "fatty acid biosynthetic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;TAS
GO:0004315 "3-oxoacyl-[acyl-carrier-protein
GO:0009536 "plastid" evidence=ISS
GO:0009631 "cold acclimation" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0042335 "cuticle development" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
TIGR_CMR|CHY_1445 CHY_1445 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q71XG4 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQH9 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2019 VC_2019 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0497 CBU_0497 "3-oxoacyl-acyl carrier protein synthase II" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0963 DET_0963 "3-oxoacyl-[acyl-carrier-protein] synthase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JF9 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1185 BA_1185 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2774 SO_2774 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
PLN02787 540 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei 1e-142
TIGR03150 407 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei 8e-47
cd00834 406 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot 1e-44
PRK07314 411 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei 2e-44
PRK06333 424 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei 2e-42
COG0304 412 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy 2e-31
PRK08439 406 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei 8e-27
PRK08722 414 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei 1e-26
pfam00109243 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, 2e-22
PTZ00050 421 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein 1e-16
cd00828 407 cd00828, elong_cond_enzymes, "elongating" condensi 1e-15
cd00832 399 cd00832, CLF, Chain-length factor (CLF) is a facto 8e-14
PLN02836 437 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei 4e-13
PRK07967 406 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei 3e-12
PRK09116 405 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei 1e-07
PRK06501 425 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei 9e-07
PRK07910 418 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei 2e-06
cd00833 421 cd00833, PKS, polyketide synthases (PKSs) polymeri 6e-06
COG3321 1061 COG3321, COG3321, Polyketide synthase modules and 0.001
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II Back     alignment and domain information 
 Score =  413 bits (1062), Expect = e-142
 Identities = 205/311 (65%), Positives = 223/311 (71%), Gaps = 35/311 (11%)

Query: 4   SCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGG 63
           S S  SPLCTWLVAACMS +C   D HQ  ++        + G  + RRRK        G
Sbjct: 3   SASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGRSRRRRKRRKCSSASG 54

Query: 64  EVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTA 123
                                   CL F PC  Y SS       G N  SS FGSN+ + 
Sbjct: 55  SASILVTS----------------CLAFGPCTHYNSS-------GGNALSSLFGSNSVS- 90

Query: 124 TLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPD 183
            LNR QRR   NR  RSG+AMAVAVQP++EV TKKKP  KQ+RVVVTGMG+VSPLGH+PD
Sbjct: 91  -LNRNQRRR--NRAARSGKAMAVAVQPEKEVETKKKPLTKQRRVVVTGMGVVSPLGHDPD 147

Query: 184 VFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243
           VFYNNLLEGVSGISEIE FDC+ FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAG
Sbjct: 148 VFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207

Query: 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT 303
           KKALADGGITEDVM ELDK+KCGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPFATT
Sbjct: 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATT 267

Query: 304 NMGSAMLAMDL 314
           NMGSAMLAMDL
Sbjct: 268 NMGSAMLAMDL 278

Length = 540
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II Back     alignment and domain information
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II Back     alignment and domain information
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional Back     alignment and domain information
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases Back     alignment and domain information
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria Back     alignment and domain information
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase Back     alignment and domain information
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations Back     alignment and domain information
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 324
PLN02787 540 3-oxoacyl-[acyl-carrier-protein] synthase II 100.0
KOG1394 440 consensus 3-oxoacyl-(acyl-carrier-protein) synthas 100.0
PRK08722 414 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.96
cd00832 399 CLF Chain-length factor (CLF) is a factor required 99.95
PRK07314 411 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.95
PRK09116 405 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.95
PRK06333 424 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.95
PRK08439 406 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.95
TIGR03150 407 fabF beta-ketoacyl-acyl-carrier-protein synthase I 99.94
PRK07967 406 3-oxoacyl-(acyl carrier protein) synthase I; Revie 99.94
PLN02836 437 3-oxoacyl-[acyl-carrier-protein] synthase 99.93
PF00109254 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal 99.93
PRK07103 410 polyketide beta-ketoacyl:acyl carrier protein synt 99.93
COG3321 1061 Polyketide synthase modules and related proteins [ 99.92
cd00834 406 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) 99.92
PRK07910 418 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.92
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 99.92
cd00828 407 elong_cond_enzymes "elongating" condensing enzymes 99.9
PRK06519 398 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.9
COG0304 412 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li 99.9
cd00833 421 PKS polyketide synthases (PKSs) polymerize simple 99.87
smart00825 424 PKS_KS Beta-ketoacyl synthase. The structure of be 99.85
PRK09185 392 3-oxoacyl-(acyl carrier protein) synthase I; Revie 99.83
PTZ00050 421 3-oxoacyl-acyl carrier protein synthase; Provision 99.83
PRK05952 381 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.82
PRK06501 425 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.78
KOG1202 2376 consensus Animal-type fatty acid synthase and rela 99.74
PRK14691 342 3-oxoacyl-(acyl carrier protein) synthase II; Prov 99.16
cd00825 332 decarbox_cond_enzymes decarboxylating condensing e 98.4
PF13723 218 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina 98.16
PRK06147 348 3-oxoacyl-(acyl carrier protein) synthase; Validat 98.15
cd00327 254 cond_enzymes Condensing enzymes; Family of enzymes 94.87
PRK07515 372 3-oxoacyl-(acyl carrier protein) synthase III; Rev 89.82
PRK09352 319 3-oxoacyl-(acyl carrier protein) synthase III; Rev 87.59
PRK08256 391 lipid-transfer protein; Provisional 80.15
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II Back     alignment and domain information 
Probab=100.00  E-value=1.4e-49  Score=405.71  Aligned_cols=286  Identities=72%  Similarity=1.114  Sum_probs=240.6

Q ss_pred             CCcccccchhHHHHHHHhhhcccCCCCCCCCCcccccccccccccchHHHHhhhhh-hcCCCCcccCCccccccCCCcch
Q 020557            2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSA-KCGVGGEVVNGSLVSSFSGSSHS   80 (324)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   80 (324)
                      |+++++++||||||||||||++|+++.++.....        +..+| .+|||.+. .|               +..|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~---------------~~~~~~   56 (540)
T PLN02787          1 MASASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGR-SRRRRKRRKCS---------------SASGSA   56 (540)
T ss_pred             CcccccchhHHHHHHHHHhhhhhccCCCcccccc--------ccccc-cchhhhhhhhc---------------cccccc
Confidence            6889999999999999999999998887544432        22333 22222221 11               224666


Q ss_pred             hhhhhhccCCCCCccccccccccccccCCCCccccccCCCcchhhhHHHhhhhcccccCcccccccccCCCccccccCCC
Q 020557           81 IQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKP  160 (324)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~f~~~~~~~~~~~~~~r~~~~r~~~s~~~~a~~~~p~~~~~~~~~~  160 (324)
                      ++.+ ..||.+|||++|+++      |+++ ..+||+.++.+  .++++||  .++...+++++++.++|..+..+++++
T Consensus        57 ~~~~-~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (540)
T PLN02787         57 SILV-TSCLAFGPCTHYNSS------GGNA-LSSLFGSNSVS--LNRNQRR--RNRAARSGKAMAVAVQPEKEVETKKKP  124 (540)
T ss_pred             hhhc-cchhcccchhhcccc------cccc-ccccccCCCcc--ccccccc--ccccCCCcccceeccCcccccccccCC
Confidence            6654 469999999999987      3333 34679999887  8899999  999999999999999998777777777


Q ss_pred             CCCCCcEEEEecceeCCCCCCHHHHHHHHHcCCCCceeCCCCCCCCCCcceeeecCCCCCCCCCChhhhhcCCHhHHHHH
Q 020557          161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL  240 (324)
Q Consensus       161 ~~~~~rVvITGmG~vtPlG~d~defWe~Ll~G~sgIs~i~rfd~~~~~~~~~G~I~dFd~~~~Isp~ear~mDp~~rlaL  240 (324)
                      +++.+||||||||+++|+|.++|+||++|++|+++|+++++|+...++++++|+|++|++..|+++++.++||++++|++
T Consensus       125 ~~~~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al  204 (540)
T PLN02787        125 LTKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLL  204 (540)
T ss_pred             CCCCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHH
Confidence            66778999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCceEEEEcccCCchHHHHHHHHHHHhhccCCCCcccccccChHHHHHHHHHhCCCCcc
Q 020557          241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLL  320 (324)
Q Consensus       241 ~AA~eALeDAGl~~~~~~~~~~~r~GV~vGt~~Gg~~~~~~~~~~l~~~~~~~~p~~~~~~l~n~iA~rVS~~lGl~GPs  320 (324)
                      .+++|||+||||+++.++.+++.|+||++|++.|++..+++.++.+....++++|+.++..+.|+.+++|++.||++||+
T Consensus       205 ~Aa~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~Gp~  284 (540)
T PLN02787        205 TAGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPN  284 (540)
T ss_pred             HHHHHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCCCCc
Confidence            99999999999975322356788999999999999998888877776667788999999999999999999999999999


Q ss_pred             ccc
Q 020557          321 FPQ  323 (324)
Q Consensus       321 ~TV  323 (324)
                      +||
T Consensus       285 ~ti  287 (540)
T PLN02787        285 YSI  287 (540)
T ss_pred             ccc
Confidence            987

>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria Back     alignment and domain information
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II Back     alignment and domain information
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase Back     alignment and domain information
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 Back     alignment and domain information
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II Back     alignment and domain information
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases Back     alignment and domain information
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations Back     alignment and domain information
>smart00825 PKS_KS Beta-ketoacyl synthase Back     alignment and domain information
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional Back     alignment and domain information
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional Back     alignment and domain information
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction Back     alignment and domain information
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain Back     alignment and domain information
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated Back     alignment and domain information
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction Back     alignment and domain information
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK08256 lipid-transfer protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
1e5m_A 416 Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas 4e-23
2gqd_A 437 The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii 5e-23
2alm_A 431 Crystal Structure Analysis Of A Mutant Beta-Ketoacy 7e-23
1ox0_A 430 The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie 7e-23
3o04_A 413 Crystal Structure Of The Beta-Keto-Acyl Carrier Pro 2e-22
2rjt_A 428 Crystal Structure Analysis Of A Surface Entropy Red 4e-22
1j3n_A 408 Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei 5e-21
2gfy_A 427 Structure Of E. Coli Fabf(K335a) Mutant With Covale 1e-14
3hnz_A 427 Structure Of E. Coli Fabf(C163a) In Complex With Pl 1e-14
2gfw_A 427 Structure Of Wild Type E. Coli Fabf (Kasii) Length 1e-14
2gfv_A 427 Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng 1e-14
1b3n_A 412 Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta 1e-14
2iwy_A 438 Human Mitochondrial Beta-ketoacyl Acp Synthase Leng 3e-10
4ddo_A 451 Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei 3e-10
4f32_A 451 Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei 3e-10
2c9h_A 444 Structure Of Mitochondrial Beta-Ketoacyl Synthase L 3e-10
3lrf_A 428 Crystal Structure Of Beta-Ketoacyl Synthase From Br 6e-10
3u0f_A 411 The Structure Of Beta-Ketoacyl Synthase From Brucel 7e-10
3kzu_A 428 Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei 2e-09
3e60_A 424 Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei 9e-09
2byw_A 418 Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C 5e-08
1dd8_A 406 Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr 6e-08
1f91_A 406 Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In 7e-08
1ek4_A 418 Beta-Ketoacyl [acyl Carrier Protein] Synthase I In 7e-08
1tqy_A 424 The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le 1e-07
1h4f_A 406 E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha 2e-07
2byz_A 418 Structure Of E. Coli Kas I H298q Mutant In Complex 2e-07
1fj4_A 406 The Structure Of Beta-Ketoacyl-[acyl Carrier Protei 2e-07
2byy_A 418 E. Coli Kas I H298e Mutation Length = 418 2e-07
2vb7_C 406 Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap 2e-07
1tqy_B 415 The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le 1e-06
4ewg_A 412 Crystal Structure Of A Beta-Ketoacyl Synthase From 2e-06
1w0i_A 431 Arabidopsis Thaliana Mitochondrial Kas Length = 431 7e-05
3oyt_A 410 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo 8e-04
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
           ++++KRVVVTG+G ++P+G+    ++  L+EG +GI  I  FD +    +   E+K F  
Sbjct: 3   NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
             ++  K +KRMD+F  + + A ++A+ D  +   V+NEL+  + GVLIG+G+GG+KV  
Sbjct: 63  TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEA-LRISYKKMNPFCVPFATTNMGSAMLAMDL 314
           D     L     + +PF +P    NM S + A++L
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINL 154
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 Back     alignment and structure
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 Back     alignment and structure
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 Back     alignment and structure
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 Back     alignment and structure
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 Back     alignment and structure
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 Back     alignment and structure
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 Back     alignment and structure
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 Back     alignment and structure
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 Back     alignment and structure
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 Back     alignment and structure
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 Back     alignment and structure
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 Back     alignment and structure
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 Back     alignment and structure
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 Back     alignment and structure
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 Back     alignment and structure
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 Back     alignment and structure
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 Back     alignment and structure
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 Back     alignment and structure
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 Back     alignment and structure
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 Back     alignment and structure
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 Back     alignment and structure
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 Back     alignment and structure
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 Back     alignment and structure
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 Back     alignment and structure
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 Back     alignment and structure
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 Back     alignment and structure
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 Back     alignment and structure
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 Back     alignment and structure
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 Back     alignment and structure
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 Back     alignment and structure
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 Back     alignment and structure
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 Back     alignment and structure
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
1ox0_A 430 Beta ketoacyl-acyl carrier protein synthase; trans 3e-52
3o04_A 413 LMO2201 protein, beta-keto-acyl carrier protein sy 6e-51
1e5m_A 416 KAS II, beta ketoacyl acyl carrier protein synthas 9e-51
3ho9_A 427 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, 1e-50
2gqd_A 437 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli 1e-50
1tqy_B 415 Actinorhodin polyketide putative beta-ketoacyl SY; 3e-49
2iwz_A 438 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho 3e-49
3kzu_A 428 3-oxoacyl-(acyl-carrier-protein) synthase II; seat 1e-48
4ddo_A 451 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci 4e-48
4ewg_A 412 Beta-ketoacyl synthase; ssgcid, structural genomic 1e-47
1j3n_A 408 3-oxoacyl-(acyl-carrier protein) synthase II; cond 2e-47
1tqy_A 424 Beta-ketoacyl synthase/acyl transferase; alpha-bet 1e-46
2wge_A 416 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta 5e-45
3mqd_A 428 Beta-ketoacyl synthase; ssgcid, ALS collaborative 8e-45
2gp6_A 434 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol 5e-44
2vba_A 406 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop 2e-43
2ix4_A 431 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke 1e-41
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 5e-30
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 3e-21
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 3e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 Back     alignment and structure
 Score =  176 bits (450), Expect = 3e-52
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
                    +  HMK  RVVVTG G+ SP+G+ P+ F+N+L  G  GI  I  FD + F 
Sbjct: 7   HHHSSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFD 66

Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
              AAEI+ F  D +   K + R D + LY L A ++A+    +    +  L++ + GV+
Sbjct: 67  VHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVI 123

Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAM 312
           + SG+GG+K   D +  L     K++ P  +P A  NM S  +AM
Sbjct: 124 VASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAM 168
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 Back     alignment and structure
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 Back     alignment and structure
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 Back     alignment and structure
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 Back     alignment and structure
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 Back     alignment and structure
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 Back     alignment and structure
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 Back     alignment and structure
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 Back     alignment and structure
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 Back     alignment and structure
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 Back     alignment and structure
>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 Back     alignment and structure
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 Back     alignment and structure
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 Back     alignment and structure
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 Back     alignment and structure
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 Back     alignment and structure
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
3ho9_A 427 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, 99.97
3kzu_A 428 3-oxoacyl-(acyl-carrier-protein) synthase II; seat 99.96
3o04_A 413 LMO2201 protein, beta-keto-acyl carrier protein sy 99.96
1e5m_A 416 KAS II, beta ketoacyl acyl carrier protein synthas 99.96
2gqd_A 437 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli 99.96
4ewg_A 412 Beta-ketoacyl synthase; ssgcid, structural genomic 99.96
1ox0_A 430 Beta ketoacyl-acyl carrier protein synthase; trans 99.95
1j3n_A 408 3-oxoacyl-(acyl-carrier protein) synthase II; cond 99.95
1tqy_B 415 Actinorhodin polyketide putative beta-ketoacyl SY; 99.95
2wge_A 416 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta 99.95
2vba_A 406 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop 99.95
2gp6_A 434 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol 99.95
4ddo_A 451 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci 99.95
2iwz_A 438 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho 99.95
3mqd_A 428 Beta-ketoacyl synthase; ssgcid, ALS collaborative 99.95
1tqy_A 424 Beta-ketoacyl synthase/acyl transferase; alpha-bet 99.95
2ix4_A 431 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke 99.94
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 99.92
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 99.91
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 99.9
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 99.9
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 99.65
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 99.65
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 99.61
3zen_D 3089 Fatty acid synthase; transferase, mycolic acid bio 99.49
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 98.03
2h84_A 374 Steely1; thiolase-fold, type III polyketide syntha 97.76
1mzj_A 339 Beta-ketoacylsynthase III; beta-ketosynthase, arom 97.48
1u0m_A 382 Putative polyketide synthase; type III polyketide 97.26
1u6e_A 335 3-oxoacyl-[acyl-carrier-protein] synthase III; tra 96.97
2ebd_A 309 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 96.06
1wdk_C 390 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame 95.99
1ulq_A 401 Putative acetyl-COA acetyltransferase; structural 95.9
1wl4_A 397 Acetyl-coenzyme A acetyltransferase 2; thiolase fo 95.87
1hnj_A 317 Beta-ketoacyl-acyl carrier protein synthase III; F 95.87
2vu1_A 392 Acetyl-COA acetyltransferase; acyltransferase, PHB 95.65
2ib8_A 395 Acetyl-COA acetyltransferase; thiolase fold, potas 95.56
1afw_A 393 3-ketoacetyl-COA thiolase; fatty acid metabolism; 95.56
2wu9_A 442 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o 95.46
2x3e_A 331 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, 95.37
1ub7_A 322 3-oxoacyl-[acyl-carrier protein] synthase; fatty a 95.26
2iik_A 418 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m 94.79
1zow_A 313 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB 94.68
4dfe_A 333 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci 94.65
3s21_A 345 3-oxoacyl-[ACP] synthase III; non-decarboxylative 93.15
3a5r_A 387 Benzalacetone synthase; chalcone synthase, type II 93.08
3goa_A 387 3-ketoacyl-COA thiolase; metabolism, fatty acid, p 92.4
4e1l_A 395 Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, 92.38
4dd5_A 396 Acetyl-COA acetyltransferase; structural genomics, 91.3
3ss6_A 394 Acetyl-COA acetyltransferase; structural genomics, 91.22
1ee0_A 402 2-pyrone synthase; polyketide synthase, thiolase f 90.77
3svk_A 407 Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, 88.33
3euo_A 379 Type III pentaketide synthase; alpha helix, acyltr 82.21
2d3m_A 406 Pentaketide chromone synthase; chalcone synthase, 82.17
1i88_A 389 CHS2, chalcone synthase 2; polyketide synthase, tr 80.13
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Back     alignment and structure
Probab=99.97  E-value=5.3e-30  Score=253.05  Aligned_cols=160  Identities=33%  Similarity=0.559  Sum_probs=147.2

Q ss_pred             CCCCCcEEEEecceeCCCCCCHHHHHHHHHcCCCCceeCCCCCCCCCCcceeeecCCCCCCCCCChhhhhcCCHhHHHHH
Q 020557          161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL  240 (324)
Q Consensus       161 ~~~~~rVvITGmG~vtPlG~d~defWe~Ll~G~sgIs~i~rfd~~~~~~~~~G~I~dFd~~~~Isp~ear~mDp~~rlaL  240 (324)
                      ....++|||||||+++|+|.++++||++|++|+++|+++++|+...++.+++|+|++||+.+||++++++.|||+++|++
T Consensus        14 ~~~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l   93 (427)
T 3ho9_A           14 CVSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGI   93 (427)
T ss_dssp             ---CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHH
T ss_pred             CCCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHH
Confidence            34567899999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcccccccCCCceEEEEcccCCchHHHHHHHHHHH-hhccCCCCcccccccChHHHHHHHHHhCCCCc
Q 020557          241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLVSLNL  319 (324)
Q Consensus       241 ~AA~eALeDAGl~~~~~~~~~~~r~GV~vGt~~Gg~~~~~~~~~~l~-~~~~~~~p~~~~~~l~n~iA~rVS~~lGl~GP  319 (324)
                      +++++||+||||++   ++++..++||++|++.|++..+++.+..+. .+...++|+.++..+.|+++++|++.||++||
T Consensus        94 ~aa~~AL~dAGl~~---~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp  170 (427)
T 3ho9_A           94 VAGVQAMQDSGLEI---TEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGP  170 (427)
T ss_dssp             HHHHHHHHHHTCCC---CTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHCCCCc---ccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCCCC
Confidence            99999999999987   367889999999999999988888777665 46678899999999999999999999999999


Q ss_pred             cccc
Q 020557          320 LFPQ  323 (324)
Q Consensus       320 s~TV  323 (324)
                      +++|
T Consensus       171 ~~~v  174 (427)
T 3ho9_A          171 SISI  174 (427)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            9987
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Back     alignment and structure
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Back     alignment and structure
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Back     alignment and structure
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Back     alignment and structure
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Back     alignment and structure
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Back     alignment and structure
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Back     alignment and structure
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Back     alignment and structure
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Back     alignment and structure
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Back     alignment and structure
>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Back     alignment and structure
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Back     alignment and structure
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Back     alignment and structure
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Back     alignment and structure
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Back     alignment and structure
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Back     alignment and structure
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Back     alignment and structure
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A Back     alignment and structure
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Back     alignment and structure
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Back     alignment and structure
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Back     alignment and structure
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Back     alignment and structure
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Back     alignment and structure
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Back     alignment and structure
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A Back     alignment and structure
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Back     alignment and structure
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Back     alignment and structure
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Back     alignment and structure
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Back     alignment and structure
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2 c.95.1.2 PDB: 1qlv_A Back     alignment and structure
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Back     alignment and structure
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A* Back     alignment and structure
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A* Back     alignment and structure
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 324
d2gfva1250 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { 2e-29
d1j3na1249 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { 1e-26
d1ox0a1256 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II 5e-23
d1e5ma1250 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { 2e-21
d2vbaa1253 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E 6e-17
d1tqya1216 c.95.1.1 (A:3-218) Actinorhodin polyketide putativ 9e-17
d2ix4a1270 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II 2e-15
d1tqyb1208 c.95.1.1 (B:2-209) Actinorhodin polyketide putativ 3e-14
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (276), Expect = 2e-29
 Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 4/151 (2%)

Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
           +RVVVTG+G++SP+G+  +  +  LL G SGIS I+ FD +++ TK A  +K F+ +  +
Sbjct: 2   RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 61

Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
           + K  ++MD F+ Y + AG +A+ D G+      E + ++ G  IGSG+GG+ +  +   
Sbjct: 62  SRKEQRKMDAFIQYGIVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHT 118

Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDL 314
           +L     +K++PF VP    NM +  L +  
Sbjct: 119 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMY 149
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 Back     information, alignment and structure
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 Back     information, alignment and structure
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 Back     information, alignment and structure
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 Back     information, alignment and structure
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 Back     information, alignment and structure
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 Back     information, alignment and structure
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
d2gfva1250 Beta-ketoacyl-ACP synthase II {Escherichia coli [T 99.97
d1tqyb1208 Actinorhodin polyketide putative beta-ketoacyl syn 99.97
d1ox0a1256 Beta-ketoacyl-ACP synthase II {Streptococcus pneum 99.97
d1j3na1249 Beta-ketoacyl-ACP synthase II {Thermus thermophilu 99.97
d1e5ma1250 Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ 99.96
d1tqya1216 Actinorhodin polyketide putative beta-ketoacyl syn 99.96
d2vbaa1253 Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta 99.92
d2ix4a1270 Beta-ketoacyl-ACP synthase II {Thale cress (Arabid 99.85
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.2e-31  Score=241.04  Aligned_cols=158  Identities=33%  Similarity=0.561  Sum_probs=146.3

Q ss_pred             CCcEEEEecceeCCCCCCHHHHHHHHHcCCCCceeCCCCCCCCCCcceeeecCCCCCCCCCChhhhhcCCHhHHHHHHHH
Q 020557          164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG  243 (324)
Q Consensus       164 ~~rVvITGmG~vtPlG~d~defWe~Ll~G~sgIs~i~rfd~~~~~~~~~G~I~dFd~~~~Isp~ear~mDp~~rlaL~AA  243 (324)
                      +|||||||||+++|+|.++++||++|++|+++|+++++|+.+.++.+++++|++|++.+++.+++.+.|||+++|++.++
T Consensus         1 ~rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa   80 (250)
T d2gfva1           1 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG   80 (250)
T ss_dssp             CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             HHHHHhCCCCcccccccCCCceEEEEcccCCchHHHHHHHHHHH-hhccCCCCcccccccChHHHHHHHHHhCCCCcccc
Q 020557          244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLVSLNLLFP  322 (324)
Q Consensus       244 ~eALeDAGl~~~~~~~~~~~r~GV~vGt~~Gg~~~~~~~~~~l~-~~~~~~~p~~~~~~l~n~iA~rVS~~lGl~GPs~T  322 (324)
                      ++||+|||+..   ++++..++||++|++.++....+..+..+. .+...++|+.++..++|+++++|++.||++||++|
T Consensus        81 ~~Al~dAg~~~---~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~t  157 (250)
T d2gfva1          81 VQAMQDSGLEI---TEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSIS  157 (250)
T ss_dssp             HHHHHHHTCCC---CTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCCSCEEC
T ss_pred             HHHHHhcCCCc---cccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCCCCccc
Confidence            99999999986   367788999999999999988887776665 35677899999999999999999999999999999


Q ss_pred             cC
Q 020557          323 QY  324 (324)
Q Consensus       323 V~  324 (324)
                      |.
T Consensus       158 v~  159 (250)
T d2gfva1         158 IA  159 (250)
T ss_dssp             CC
T ss_pred             cc
Confidence            83
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Back     information, alignment and structure