Citrus Sinensis ID: 020589

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
ccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHcccccccccccccccccccccccccc
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILsefcpanpsllginigggaevklrlrrpnrewdffpyEQILDTMLHELchneygphnadfYKLWDEIRKECDELMAKgitgtgkgfdlpgrrlggfsrqpplsQLRQSALAAAENRArhgallpsgpnriggdssiKAALSPIQAAAMAAERRLhddmwcgskslnsdidvredvgsstdasessktssvsnnrsgqtsslqpssgqkavdVGQMWQCNMCTLLNQrnksvgnlkgwsckfctldnsslSERCLacgewrysngppistpgpypgt
MDLNDLNKVWEVKAlkkigeddaRQILEKVakqvqpimrkHKWKVRILSEFcpanpsllginiGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARhgallpsgpnriGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGsstdasessktssvsnnrsgqtsslqpssgQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEwrysngppistpgpypgt
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPlsqlrqsalaaaENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGsstdasessktssvsnnrsGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
******NKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDL*********************************************************************MWC*************************************************VDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRY***************
****DLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGT*****************************************************************************************REDVGSSTDASESSKTSS************************************************SCKFCTLDNSSLSERCLACG*******************
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVR**************************************DVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
*DLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARH********************L**IQ*A****************************************************************************************KGWSCKFCTLDNSSLSERCLACGEW*****************
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MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query324 2.2.26 [Sep-21-2011]
P38838269 DNA damage response prote yes no 0.654 0.788 0.342 4e-27
O94580282 Ubiquitin and WLM domain- yes no 0.459 0.528 0.308 9e-12
Q9P7B5283 DNA damage response prote no no 0.376 0.431 0.336 1e-11
>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 16/228 (7%)

Query: 9   VWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
           + +V  L+ K  ++DA  +++++A +V  +M+++ +KV  L EF P +  LLG+N+  G+
Sbjct: 29  IQKVAVLQSKPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGS 88

Query: 68  EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
           ++ LRLR    E+ F P E I+ TMLHEL HN +GPH+  FY   DE+      +  +G+
Sbjct: 89  KIMLRLRCSTDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGL 148

Query: 128 TGTGKGFDLPGRRLGGFS-----RQPPLSQLRQSALAAAENR-ARHGALLPSGPNRIGGD 181
             T  G    G+RLGG +     R P       + +     +  + G+L P G       
Sbjct: 149 YDTFLG---NGQRLGGRANLRSNRYPMTGISTNTGIVRKRGKGVKLGSLHPEGI------ 199

Query: 182 SSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDA 229
           SSI    SP + AA AAERR  DD WCG    N D  + +++ SS + 
Sbjct: 200 SSIDRGNSPRELAAFAAERRYRDDRWCGETKNNKDQIISDNISSSLEV 247
Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=4 SV=1 Back     alignment and function description
>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
255564031326 conserved hypothetical protein [Ricinus 0.966 0.960 0.712 1e-134
224097470331 predicted protein [Populus trichocarpa] 0.962 0.942 0.695 1e-128
225461874366 PREDICTED: DNA damage response protein W 0.987 0.874 0.6 1e-119
224116656388 predicted protein [Populus trichocarpa] 1.0 0.835 0.538 1e-110
255563536404 conserved hypothetical protein [Ricinus 1.0 0.801 0.487 1e-104
297847960401 zinc ion binding protein [Arabidopsis ly 1.0 0.807 0.503 1e-100
413952857346 putative uncharacterized protein hypro4 0.981 0.919 0.547 5e-98
218197734352 hypothetical protein OsI_21977 [Oryza sa 0.984 0.906 0.542 3e-95
356566507409 PREDICTED: uncharacterized protein LOC10 1.0 0.792 0.469 7e-95
147790665354 hypothetical protein VITISV_033675 [Viti 0.891 0.816 0.570 3e-94
>gi|255564031|ref|XP_002523014.1| conserved hypothetical protein [Ricinus communis] gi|223537736|gb|EEF39356.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/330 (71%), Positives = 268/330 (81%), Gaps = 17/330 (5%)

Query: 1   MDLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           MDLNDLNK+WEVK LK KIGE+DA  +LEKVAKQVQPIMR H WKVRILSEFCP+NPSL+
Sbjct: 1   MDLNDLNKIWEVKPLKNKIGEEDAMILLEKVAKQVQPIMRNHHWKVRILSEFCPSNPSLM 60

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+NIGGGAE+KLRLRRPN EWDFFPYEQ+LDTMLHELCHN+YGPHNADFY L D+IRKEC
Sbjct: 61  GLNIGGGAEIKLRLRRPNCEWDFFPYEQVLDTMLHELCHNQYGPHNADFYNLLDQIRKEC 120

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +EL+AKGITGTG+GFDLPGR LGGFSRQPPLS +RQ+ALAAAENRAR GA+LPSGP R+G
Sbjct: 121 EELIAKGITGTGQGFDLPGRCLGGFSRQPPLSSMRQTALAAAENRARRGAVLPSGPQRVG 180

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVS 239
           GD +IK ALSP+QAAAMAAERRLHDD+WCGSKSL    D++E+V    +AS  S  S   
Sbjct: 181 GDGNIKTALSPVQAAAMAAERRLHDDLWCGSKSLEGISDLKENV----EASSKSNISITF 236

Query: 240 NNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQ------------RNKSVGNLKGWSC 287
              S +TS    ++GQK VD    WQC+MCTLLNQ            R+KS+ N K WSC
Sbjct: 237 EGVSSRTSPRGQTTGQKPVDDHPQWQCHMCTLLNQPLVLICEACGPERSKSIANFKVWSC 296

Query: 288 KFCTLDNSSLSERCLACGEWRYSNGPPIST 317
           KFCTL+NS   ERC+ACGEWRYS GPP+ST
Sbjct: 297 KFCTLENSVELERCIACGEWRYSYGPPVST 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097470|ref|XP_002310948.1| predicted protein [Populus trichocarpa] gi|222850768|gb|EEE88315.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461874|ref|XP_002264382.1| PREDICTED: DNA damage response protein WSS1 [Vitis vinifera] gi|296089891|emb|CBI39710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116656|ref|XP_002317357.1| predicted protein [Populus trichocarpa] gi|222860422|gb|EEE97969.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563536|ref|XP_002522770.1| conserved hypothetical protein [Ricinus communis] gi|223538008|gb|EEF39621.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297847960|ref|XP_002891861.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337703|gb|EFH68120.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|413952857|gb|AFW85506.1| putative uncharacterized protein hypro4 [Zea mays] Back     alignment and taxonomy information
>gi|218197734|gb|EEC80161.1| hypothetical protein OsI_21977 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|356566507|ref|XP_003551472.1| PREDICTED: uncharacterized protein LOC100795976 [Glycine max] Back     alignment and taxonomy information
>gi|147790665|emb|CAN76517.1| hypothetical protein VITISV_033675 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
TAIR|locus:505006190404 AT1G55915 [Arabidopsis thalian 0.879 0.705 0.555 2.6e-96
ASPGD|ASPL0000062736336 AN0304 [Emericella nidulans (t 0.580 0.559 0.403 7.7e-32
UNIPROTKB|G4MYN3 483 MGG_01341 "Uncharacterized pro 0.611 0.409 0.346 3.6e-29
SGD|S000001176269 WSS1 "Sumoylated protein local 0.654 0.788 0.337 4e-26
CGD|CAL0004104306 orf19.291 [Candida albicans (t 0.358 0.379 0.350 1.4e-20
UNIPROTKB|Q5AEH7306 CaO19.291 "Putative uncharacte 0.358 0.379 0.350 1.4e-20
POMBASE|SPCC1442.07c282 SPCC1442.07c "ubiquitin/metall 0.324 0.372 0.356 2.1e-11
POMBASE|SPAC521.02283 SPAC521.02 "WLM domain protein 0.376 0.431 0.336 6.9e-11
TAIR|locus:2177286 603 AT5G35690 [Arabidopsis thalian 0.299 0.160 0.373 5.5e-09
ASPGD|ASPL0000062153341 AN1049 [Emericella nidulans (t 0.265 0.252 0.315 0.00047
TAIR|locus:505006190 AT1G55915 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 809 (289.8 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 164/295 (55%), Positives = 199/295 (67%)

Query:     2 DLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60
             +L DLNKVWE+KALK K  ED+AR+ILEKVA QVQPIM + KW+V++LSEFCP NP LLG
Sbjct:     5 NLEDLNKVWEIKALKRKPREDEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLG 64

Query:    61 INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120
             +N+  G +VKLRLRR N + DF  Y +ILDTMLHELCHN +GPHNA FYKLWDE+RKEC+
Sbjct:    65 VNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELCHNAHGPHNASFYKLWDELRKECE 124

Query:   121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPXXXXXXXXXXXXENRARHGALLPSGPNRIGG 180
             ELM+KGITGTG+GFD+PG+RLGG SRQP             E R R G LLPSGP R+GG
Sbjct:   125 ELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATAATAAEKRVRAGTLLPSGPQRLGG 184

Query:   181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNS------DIDV-REDVGXXXXXXXXX 233
             DSSI + LSPIQAAAMAAERRL DD+WCGS+S ++      D D  +E V          
Sbjct:   185 DSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALEDEENDSDTYKEPVSIRETCTSVN 244

Query:   234 XXXXXXXXXXGQTSSLQPSSG-QKAVDVGQMWQCNMCTLLNQRNKSVGNLKGWSC 287
                           S  PSS  Q+  DV  + + +      +RN+S G+ +G SC
Sbjct:   245 GKSVKRCNSWSNAHSCPPSSSHQQGSDVIDLTEESFEIRCTKRNRSPGD-QGPSC 298
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
ASPGD|ASPL0000062736 AN0304 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MYN3 MGG_01341 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
SGD|S000001176 WSS1 "Sumoylated protein localizing to the nuclear periphery of mother cells" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0004104 orf19.291 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEH7 CaO19.291 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPCC1442.07c SPCC1442.07c "ubiquitin/metalloprotease fusion protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC521.02 SPAC521.02 "WLM domain protein" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2177286 AT5G35690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062153 AN1049 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
pfam08325183 pfam08325, WLM, WLM domain 7e-74
>gnl|CDD|219796 pfam08325, WLM, WLM domain Back     alignment and domain information 
 Score =  225 bits (575), Expect = 7e-74
 Identities = 85/197 (43%), Positives = 115/197 (58%), Gaps = 16/197 (8%)

Query: 7   NKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGG 65
            KV  +KALK K     A  +L+++A  V+PIM++H+W+V +L+EF P N  LLG+N+  
Sbjct: 1   PKVHNIKALKRKPDHSRALDLLKRLADDVRPIMKEHRWRVGLLTEFYPRNARLLGLNVNK 60

Query: 66  GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAK 125
           G  ++LRLR P+ +  F P+E I+ T+LHEL HN +GPH+  FY L DE+RKE +EL A+
Sbjct: 61  GEVIELRLRTPSDDGGFLPFESIMGTLLHELAHNVHGPHDRKFYALLDELRKEVEELDAR 120

Query: 126 GITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIK 185
           G      GF   GRRLGG                  E R   G  L  G  R+GGDS  +
Sbjct: 121 GYD----GFLSSGRRLGGRGSYNSA-----------EGRELGGNGLSGGGERLGGDSLSR 165

Query: 186 AALSPIQAAAMAAERRL 202
           +  S  + AA AAERRL
Sbjct: 166 SGESARELAAAAAERRL 182

This is a predicted metallopeptidase domain called WLM (Wss1p-like metalloproteases). These are linked to the Ub-system by virtue of fusions with the UB-binding PUG (PUB), Ub-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation. Length = 183

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 324
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 100.0
KOG4842278 consensus Protein involved in sister chromatid sep 99.89
KOG4842278 consensus Protein involved in sister chromatid sep 99.55
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 99.52
COG1451223 Predicted metal-dependent hydrolase [General funct 99.26
PF0064130 zf-RanBP: Zn-finger in Ran binding protein and oth 98.03
smart00731146 SprT SprT homologues. Predicted to have roles in t 97.9
PF10263157 SprT-like: SprT-like family; InterPro: IPR006640 T 97.4
smart0054726 ZnF_RBZ Zinc finger domain. Zinc finger domain in 96.79
PRK04351149 hypothetical protein; Provisional 95.36
KOG4477 228 consensus RING1 interactor RYBP and related Zn-fin 94.15
COG3091156 SprT Zn-dependent metalloprotease, SprT family [Ge 93.86
PRK04860160 hypothetical protein; Provisional 93.65
PRK03982288 heat shock protein HtpX; Provisional 91.98
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 91.53
PRK03001283 M48 family peptidase; Provisional 91.17
PRK04897298 heat shock protein HtpX; Provisional 90.72
PF0064130 zf-RanBP: Zn-finger in Ran binding protein and oth 90.21
COG0501302 HtpX Zn-dependent protease with chaperone function 90.19
PRK03072288 heat shock protein HtpX; Provisional 89.52
PRK01265324 heat shock protein HtpX; Provisional 89.04
KOG3931 484 consensus Uncharacterized conserved protein [Funct 88.99
PF05569299 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 88.83
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 88.2
PF08325186 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 88.19
PRK02870336 heat shock protein HtpX; Provisional 87.95
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 87.24
cd0035033 rubredoxin_like Rubredoxin_like; nonheme iron bind 86.62
PRK05457284 heat shock protein HtpX; Provisional 86.34
PRK01345317 heat shock protein HtpX; Provisional 86.11
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 85.23
KOG4198280 consensus RNA-binding Ran Zn-finger protein and re 85.2
PRK02391296 heat shock protein HtpX; Provisional 85.19
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 83.87
PF01435226 Peptidase_M48: Peptidase family M48 This is family 83.71
cd0072934 rubredoxin_SM Rubredoxin, Small Modular nonheme ir 83.01
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 82.72
COG4219337 MecR1 Antirepressor regulating drug resistance, pr 81.03
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information 
Probab=100.00  E-value=4.6e-54  Score=387.02  Aligned_cols=180  Identities=53%  Similarity=0.836  Sum_probs=162.7

Q ss_pred             ceEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHH
Q 020589            8 KVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYE   86 (324)
Q Consensus         8 ~v~~I~~L~-~p~~~~A~~~L~rlA~~v~pIMr~~~w~V~~L~Ef~P~~~~llGlN~N~G~~I~LRLR~~~~~~~flp~~   86 (324)
                      +|++|++|+ +|++++|++||+|||++|+|||++|+|+|++|+||+|.++++||+|+|+|++|.||||++++ ..|+||+
T Consensus         2 ~v~~I~~L~~~p~~~~A~~lL~rlA~~v~pIM~~~~~~V~~L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~   80 (186)
T PF08325_consen    2 HVHFIKVLPNLPDEEEALELLERLAADVKPIMRKHGWRVGSLEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYE   80 (186)
T ss_pred             ceeEEeeCCCCcCHHHHHHHHHHHHHHHHHHHHHcCcccCeeeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHH
Confidence            699999999 99999999999999999999999999999999999999999999999999999999999988 8999999


Q ss_pred             HHHHHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHccccCCCCcccCCCccccCCcCCCCchHHHHHHHHHHHHHhh
Q 020589           87 QILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRAR  166 (324)
Q Consensus        87 ~I~~vmlHELaH~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~g~g~gf~~~G~rLGG~~~~~~~~~~r~~a~~aaekR~~  166 (324)
                      .|++|||||||||+|++||++||+++++|..||++|+++||+   +||++.|++|||.....+            +.+..
T Consensus        81 ~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~---~gf~~~G~~l~~~~~~~~------------~~~~~  145 (186)
T PF08325_consen   81 TILGTMLHELAHNVHGPHDDKFWKLLDELRKECEELDAKGYT---EGFWSSGRRLGGSSGQPS------------EEREL  145 (186)
T ss_pred             HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhcCCc---cccCCCCcccCCCCcccc------------hhhhh
Confidence            999999999999999999999999999999999999999998   899999999999755433            11111


Q ss_pred             hCCcCCCCCcccCCCCCC----CCCCCHHHHHHHHHHHHhh
Q 020589          167 HGALLPSGPNRIGGDSSI----KAALSPIQAAAMAAERRLH  203 (324)
Q Consensus       167 ~~~~~~sgg~rLGG~~~~----~~~~s~re~aa~AAERR~~  203 (324)
                      ....+.+++++|||++..    .+..++||++|+|||||++
T Consensus       146 ~~~~~~~~~~~LgG~s~~~~~~~~~~~~Re~~a~AAerR~~  186 (186)
T PF08325_consen  146 RGNGLSGGGQRLGGGSSSRPRKAQPKSPREAAAAAAERRLR  186 (186)
T ss_pred             hccccCCCCeeCCCCCCCCCCcCCCcCHHHHHHHHHHhhcC
Confidence            223456778999998752    4688999999999999975

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>COG1451 Predicted metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) Back     alignment and domain information
>smart00547 ZnF_RBZ Zinc finger domain Back     alignment and domain information
>PRK04351 hypothetical protein; Provisional Back     alignment and domain information
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription] Back     alignment and domain information
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>PRK03982 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PRK03001 M48 family peptidase; Provisional Back     alignment and domain information
>PRK04897 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03072 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01265 heat shock protein HtpX; Provisional Back     alignment and domain information
>KOG3931 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase Back     alignment and domain information
>PRK02870 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center Back     alignment and domain information
>PRK05457 heat shock protein HtpX; Provisional Back     alignment and domain information
>PRK01345 heat shock protein HtpX; Provisional Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only] Back     alignment and domain information
>PRK02391 heat shock protein HtpX; Provisional Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification Back     alignment and domain information
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 60/173 (34%)

Query: 3   LNDLNKVWEVKALKKIGEDDAR-QIL-----EKVAKQVQPIMRKH--------------- 41
           L  L  V   KA       +   +IL     ++V   +      H               
Sbjct: 247 LLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 42  -----KW---KVRIL-SEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPY------E 86
                K+   + + L  E    NP  L I I     ++         WD + +       
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI-IA--ESIR---DGLAT-WDNWKHVNCDKLT 356

Query: 87  QILDTMLHELCHNEYG---------PHNAD-----FYKLWDEIRKECDELMAK 125
            I+++ L+ L   EY          P +A         +W ++ K    ++  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 98.59
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 98.29
3gj3_B33 Nuclear pore complex protein NUP153; G protein, GD 98.28
2d9g_A53 YY1-associated factor 2; ZF-ranbp domain, structur 98.25
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 98.24
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 98.22
1nj3_A31 NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, 98.21
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 98.1
3gj5_B34 Nuclear pore complex protein NUP153; G protein, GD 97.45
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 97.32
2ebr_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.25
2ebq_A47 Nuclear pore complex protein NUP153; ZF-ranbp doma 97.1
3gj7_B98 Nuclear pore complex protein NUP153; G protein, GD 96.64
2ebv_A57 Nuclear pore complex protein NUP153; ZF-ranbp doma 96.29
1nj3_A31 NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, 94.95
3gj8_B92 Nuclear pore complex protein NUP153; G protein, GD 94.88
3gj3_B33 Nuclear pore complex protein NUP153; G protein, GD 93.95
2lk0_A32 RNA-binding protein 5; zinc finger; NMR {Homo sapi 93.69
2k1p_A33 Zinc finger RAN-binding domain-containing protein 93.68
3cqb_A107 Probable protease HTPX homolog; heat shock protein 93.39
3a9j_C34 Mitogen-activated protein kinase kinase kinase 7- 93.37
2j9u_B76 VPS36, vacuolar protein sorting-associated protein 91.17
2d9g_A53 YY1-associated factor 2; ZF-ranbp domain, structur 89.13
1n0z_A45 ZNF265; zinc finger, RNA splicing, transcription; 88.97
2crc_A52 Ubiquitin conjugating enzyme 7 interacting protein 88.52
3c37_A253 Peptidase, M48 family; Q74D82, GSR143A, structural 86.76
3b08_B64 Ranbp-type and C3HC4-type zinc finger-containing; 85.37
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 83.3
3dte_A301 IRRE protein; radiotolerance, gene regulation, met 83.24
1dx8_A70 Rubredoxin; electron transport, zinc-substitution; 82.23
3pwf_A170 Rubrerythrin; non heme iron peroxidases, oxidative 81.35
1e8j_A52 Rubredoxin; iron-sulfur-protein, zinc-substitution 80.55
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Back     alignment and structure
Probab=98.59  E-value=1.1e-08  Score=82.90  Aligned_cols=49  Identities=31%  Similarity=0.753  Sum_probs=25.7

Q ss_pred             cccccccccccccCC----------CCCC--------------------------------CCCCCccccCCCCCCCCCC
Q 020589          261 GQMWQCNMCTLLNQR----------NKSV--------------------------------GNLKGWSCKFCTLDNSSLS  298 (324)
Q Consensus       261 ~~~W~c~~cTl~N~~----------pk~~--------------------------------~~~~~W~C~~CT~~N~~~~  298 (324)
                      ...|+|..|++.|.+          ||+.                                .+...|.|++|++.|....
T Consensus         7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~C~~~N~~~~   86 (98)
T 3gj7_B            7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNKPEA   86 (98)
T ss_dssp             ----------------------------------------------------------------CCEECTTTCCEECTTC
T ss_pred             CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCCcCcCCChhhc
Confidence            467999999999986          4431                                0224699999999999999


Q ss_pred             ccccccCCccc
Q 020589          299 ERCLACGEWRY  309 (324)
Q Consensus       299 ~~C~~Cg~~r~  309 (324)
                      .+|.+|+++||
T Consensus        87 ~~C~aC~tpkP   97 (98)
T 3gj7_B           87 VKCVACETPKP   97 (98)
T ss_dssp             SBCTTTCCBCC
T ss_pred             ceecccCCCCC
Confidence            99999999997
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Back     alignment and structure
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A Back     alignment and structure
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Back     alignment and structure
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Back     alignment and structure
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Back     alignment and structure
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A Back     alignment and structure
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Back     alignment and structure
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A Back     alignment and structure
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A* Back     alignment and structure
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Back     alignment and structure
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1 Back     alignment and structure
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1 Back     alignment and structure
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Back     alignment and structure
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Back     alignment and structure
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A Back     alignment and structure
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A Back     alignment and structure
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A Back     alignment and structure
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
d1q5wa_31 Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.72
d2gqea129 Nuclear pore complex protein nup153 {Human (Homo s 96.99
d1q5wa_31 Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} 95.42
d1yuza236 Nigerythrin, C-terminal domain {Desulfovibrio vulg 90.07
d1n0za_45 Znf265, first zinc-finger domain {Human (Homo sapi 87.9
d1dx8a_70 Rubredoxin {Guillardia theta [TaxId: 55529]} 85.42
d1dx8a_70 Rubredoxin {Guillardia theta [TaxId: 55529]} 84.06
d1brfa_53 Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2 83.68
d1nnqa237 Rubrerythrin, C-terminal domain {Archaeon Pyrococc 83.29
d2i47a1254 TNF-alpha converting enzyme, TACE, catalytic domai 82.38
d2dsxa152 Rubredoxin {Desulfovibrio gigas [TaxId: 879]} 80.96
d1iroa_53 Rubredoxin {Clostridium pasteurianum [TaxId: 1501] 80.11
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=6.7e-06  Score=51.09  Aligned_cols=29  Identities=28%  Similarity=0.597  Sum_probs=26.1

Q ss_pred             CCCCccccCCCCCCCCCCccccccCCccc
Q 020589          281 NLKGWSCKFCTLDNSSLSERCLACGEWRY  309 (324)
Q Consensus       281 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~r~  309 (324)
                      ++.-|+|..|||.|.+....|++|.-+|.
T Consensus         3 ~samWsC~HCTf~N~pgtd~CeMC~LPrt   31 (31)
T d1q5wa_           3 TSAMWACQHCTFMNQPGTGHCEMCSLPRT   31 (31)
T ss_dssp             CCCCEECSSSCCEECTTCSBCTTTCCBCC
T ss_pred             ccceeEeeeeeeecCCCCCcchhhccCCC
Confidence            45679999999999999999999998873
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]} Back     information, alignment and structure
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]} Back     information, alignment and structure
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure