Citrus Sinensis ID: 020612

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEGT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccEEcccccccccccccEEEccccHHHccccccccccccEEEEccccccccEEEEEEccccccccccccccccccHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEccEEEEEccccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHcccccccccccccccccccHHHHHHHHHHccccccHHHHcccHHHHHHHHcccccEEEEEEcccEEEccccccccccccccHccHHHHHHHccccccccccccEEEEEcccccccEEEEEcccccccccHccccccccHHHHHHHccHcccHHcccHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccEEccccHcccccccccccEEEEEEEcccccEEEEEcccccccccEEEEEcccccccHHHHHHHHHHHHHHccEEcEEEEEcccccccccccccccHEEEEEEEcccccccccHHHHccc
Coil and Loop (DISEMBL)
mstnlqtqafagnpirsktpkstdpfsptsalESLKTRlldntlhcqpqkhhsslssssssspdfkvlpfrkgrpltysgpgetapvwhlgwislgdCKIFLANSGIELKEEALVYLGSRSADDVVYWAIdvsdgdslasefgskqlCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNvsrfcghcgektipkeagklkqcsnasckkriyprvdPVVIMLVIDRENDRVLLSrqsrfvprmwsciagfiepgesLEEAVRRETWEETGIEVGEVVyhtsqpwpvgpnsmpcqlmVGFYAYAKSFEinvdkeelegt
Flexible Loop (DISEMBL)
mstnlqtqafagnpirsktpkstdpfSPTSALESLKTRLLDNTLHCQPQKhhsslssssssspdFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEktipkeagklkqcsnasckkriyprvdPVVIMLVIDRENDRVLlsrqsrfvprMWSCIAgfiepgeslEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVdkeelegt
Low Complexity Region (SEG)
MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHsslsssssssPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEGT
Disordered region (IsUnstruct)
***************************************************************************LTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINV********
Disordered Region (DISOPRED)
******T*A***********************ESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVD*EEL***
Disordered Region (DISEMBL)
MSTNLQTQAFAGNPIRSK************ALESLKTRLLDNTLHC******************FKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEGT
Disordered Region (DISPRO)
*******Q*F**NPI****PKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEEL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q94A82	438	Nudix hydrolase 19, chlor	yes	no	0.950	0.700	0.702	1e-138
Q29RH3	444	Peroxisomal NADH pyrophos	yes	no	0.656	0.477	0.402	2e-35
Q4R7L8	462	Peroxisomal NADH pyrophos	N/A	no	0.650	0.454	0.407	3e-35
Q9DCN1	462	Peroxisomal NADH pyrophos	yes	no	0.801	0.560	0.353	5e-35
Q9BQG2	462	Peroxisomal NADH pyrophos	yes	no	0.656	0.458	0.406	6e-35
Q5RD76	462	Peroxisomal NADH pyrophos	yes	no	0.811	0.567	0.356	7e-34
Q9Y7J0	376	Probable NADH pyrophospha	yes	no	0.622	0.534	0.365	8e-31
Q6LLW5	266	NADH pyrophosphatase OS=P	yes	no	0.628	0.763	0.320	1e-23
Q86X67	352	Nucleoside diphosphate-li	no	no	0.492	0.451	0.388	1e-22
Q4ZTN0	278	NADH pyrophosphatase OS=P	yes	no	0.479	0.557	0.370	2e-22

>sp|Q94A82|NUD19_ARATH Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 227/323 (70%), Positives = 272/323 (84%), Gaps = 16/323 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +               + + S+
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLI-------------PVIPNHST 82

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct: 83  PSPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWPVGP+SMPC
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
           QLM+GF+A+AK+ +INVDKEELE
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELE 344

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Has a high affinity for NADPH compared with that for NADH.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|Q29RH3|NUD12_BOVIN Peroxisomal NADH pyrophosphatase NUDT12 OS=Bos taurus GN=NUDT12 PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 131/236 (55%), Gaps = 24/236 (10%)

Query: 99  KIFLANSGIEL--KEEALVYLGSRSADD----VVYWAIDVSDGDSLASE-FGSKQLCFVE 151
           KI L   G+EL  K+E   Y G  S ++    V ++A+ +   D++A+E F  +      
Sbjct: 175 KITLIFLGVELEMKKEFFNYAGEISKEEEDGLVAWFALGI---DTVAAEEFKQRHENCYF 231

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct: 232 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRVCLKED 288

Query: 212 C------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
           C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct: 289 CPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 348

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           VRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct: 349 VRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 399

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q4R7L8|NUD12_MACFA Peroxisomal NADH pyrophosphatase NUDT12 OS=Macaca fascicularis GN=NUDT12 PE=2 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 130/233 (55%), Gaps = 23/233 (9%)

Query: 100 IFLANSGIELKEEALVYLGS--RSADD--VVYWAIDVSDGDSLASE-FGSKQLCFVELRT 154
           IFL    +E+K++ L Y G   R  +D  V ++A+ +   D +A+E F  +      L  
Sbjct: 197 IFLGVE-LEMKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYFLHP 252

Query: 155 VMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASC-- 212
            M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    C  
Sbjct: 253 PMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNGTKIEEGGYKRVCLKEDCPS 309

Query: 213 ----KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRR 268
                   YPRVDPVVIM VI  +  R LL RQ RF P M++C+AGFIEPGE++E+AVRR
Sbjct: 310 LNGVHNTSYPRVDPVVIMQVIHPDGTRCLLGRQKRFPPGMFTCLAGFIEPGETIEDAVRR 369

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           E  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct: 370 EVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 417

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9DCN1|NUD12_MOUSE Peroxisomal NADH pyrophosphatase NUDT12 OS=Mus musculus GN=Nudt12 PE=2 SV=1

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 148/300 (49%), Gaps = 41/300 (13%)

Query: 49  QKHHSSLSSSSSSSPDFKVLPFRKGRPL-TYSGPGETA--PVWHLGWISLGDCKIFLANS 105
           ++++S    +  S P    L F    PL T  G  E++  P   L  ++  D K +LA  
Sbjct: 132 KRNNSDWLQAKESHPTTVYLLFSDLNPLVTLGGNKESSQQPEVRLCQLNYPDVKGYLAQP 191

Query: 106 GIELKEEALVYLG-----------------SRSADDVVYW-AIDVSDGDSLASEFGSKQL 147
               ++  LV+LG                     D +V W A+ +  G   A EF  +  
Sbjct: 192 ----EKITLVFLGVELEMRKGSPAQAGGVPEEEEDGLVAWFALGIEPG--AAEEFKQRHE 245

Query: 148 CFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQC 207
               L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C
Sbjct: 246 NCYFLHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVC 302

Query: 208 SNASC------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGES 261
              +C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE+
Sbjct: 303 VRETCPSLQGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGET 362

Query: 262 LEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           +E+AVRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct: 363 IEDAVRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 417

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9BQG2|NUD12_HUMAN Peroxisomal NADH pyrophosphatase NUDT12 OS=Homo sapiens GN=NUDT12 PE=1 SV=1

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 130/236 (55%), Gaps = 24/236 (10%)

Query: 99  KIFLANSGIEL--KEEALVYLGS--RSADD--VVYWAIDVSDGDSLASE-FGSKQLCFVE 151
           KI L   G+EL  K++ L Y G   R  +D  V ++A+ +   D +A+E F  +      
Sbjct: 193 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 249

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct: 250 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKED 306

Query: 212 C------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
           C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct: 307 CPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 366

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           VRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct: 367 VRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIE 417

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q5RD76|NUD12_PONAB Peroxisomal NADH pyrophosphatase NUDT12 OS=Pongo abelii GN=NUDT12 PE=2 SV=1

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 151/297 (50%), Gaps = 35/297 (11%)

Query: 49  QKHHSSLSSSSSSSPDFKVLPFRKGRPL-TYSGPGET--APVWHLGWISLGDCKIFLANS 105
           ++++S    +  S P    + F    PL T  G  E+   P   L  ++  D K +LA  
Sbjct: 132 KRNNSDWLLAKESHPATVFILFSNLNPLVTLGGNKESFQQPEVRLCQLNYTDIKDYLAQP 191

Query: 106 --------GIEL--KEEALVYLGS--RSADD--VVYWAIDVSDGDSLASE-FGSKQLCFV 150
                   G+EL  K++   Y G   R  +D  V ++A+ +   D +A+E F  +     
Sbjct: 192 EKITLIFLGVELEIKDKLFNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCY 248

Query: 151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
            L   M A     ++   +  +   AR++L W++  +FC  CG  T  +E G  + C   
Sbjct: 249 FLHPPMPALLQLKEK---EAGVVAQARSVLAWYSRYKFCPTCGNATKIEEGGYKRVCLKE 305

Query: 211 SC------KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
            C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct: 306 DCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 365

Query: 265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           AVRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct: 366 AVRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIE 417

Hydrolyzes NAD(P)H to NMNH and AMP (2',5'-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9Y7J0|NPY1_SCHPO Probable NADH pyrophosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.03c PE=3 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 29/230 (12%)

Query: 113 ALVYLGSRSADDVV-------YWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQR 165
            LVY+G+   +           +AID++  D L          FV LR++        Q 
Sbjct: 102 VLVYMGNEERNGPTDNWSQHNVFAIDITGIDELQQSIRDNGGTFVNLRSIFTEQY---QL 158

Query: 166 AMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCS--------NASCKKRI- 216
           + +D      AR++L+W +  RFC  CG++ IP   G    CS        N   KK I 
Sbjct: 159 SASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVCSDVLLNDDSNCPSKKGIN 218

Query: 217 ---YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEE 273
              YPR DP VIM+++  +   +LL R  R    +++C+AGF+EPGESLEEAV RET+EE
Sbjct: 219 NYQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRETYEE 278

Query: 274 TGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKE-ELE 321
           +G++V +V+Y+ SQPWP      P  LM+  +  A K+ +I  DK+ ELE
Sbjct: 279 SGVDVEKVLYYASQPWP-----FPQSLMLACFGIARKNAKIQRDKDLELE 323

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6LLW5|NUDC_PHOPR NADH pyrophosphatase OS=Photobacterium profundum GN=nudC PE=3 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 34/237 (14%)

Query: 92  WISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVE 151
           W  + D K++L ++ I L E++ +   + SA               +  E+    + ++E
Sbjct: 15  WCVVNDRKLYLLDNAIPLLEKSELTFNTDSA--------------RVIGEYLDHPVYWLE 60

Query: 152 LRTVMVATDWADQRAM-----ADLAIAGHARALLEWHNVSRFCGHCGEKTIPKE---AGK 203
               + + D+  QR +     A   +AG A  L    +   FC  CG   +  +   A  
Sbjct: 61  ANNCLHSDDFYTQRELLGIDQALFDLAGRATQLSHMLHTQSFCSVCGGAAVLADDQFAMV 120

Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
            +QCSNA      YPRV P +I+ V  R+ D++LL++  R    +++ IAGF+E GE+LE
Sbjct: 121 CQQCSNAQ-----YPRVSPCIIVAV--RKEDQILLAQHPRHKTGIYTVIAGFVEAGETLE 173

Query: 264 EAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
           + V RE  EETGI+V  + Y +SQPW     + P  +M+ F A  +S EIN D EEL
Sbjct: 174 QCVAREVEEETGIQVKNIRYFSSQPW-----AFPSNIMMAFLADYESGEINPDYEEL 225

Photobacterium profundum (taxid: 74109)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q86X67|NUD13_HUMAN Nucleoside diphosphate-linked moiety X motif 13 OS=Homo sapiens GN=NUDT13 PE=2 SV=3

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 93/175 (53%), Gaps = 16/175 (9%)

Query: 149 FVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCS 208
           F+ELR  +       Q    D ++   A+ALL WH+  +FC   G+ T    AG  + C 
Sbjct: 135 FIELRKALF------QLNARDASLLSTAQALLRWHDAHQFCSRSGQPTKKNVAGSKRVCP 188

Query: 209 NASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRR 268
           + +     YP++ PV I LV D    R LL+RQS F   M+S +AGF + GES+EE +RR
Sbjct: 189 SNNII--YYPQMAPVAITLVSD--GTRCLLARQSSFPKGMYSALAGFCDIGESVEETIRR 244

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK--SFEINVDKEELE 321
           E  EE G+EV  + Y+ SQ WP    S    LM+  +A  K    EI V+  ELE
Sbjct: 245 EVAEEVGLEVESLQYYASQHWPFPSGS----LMIACHATVKPGQTEIQVNLRELE 295

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q4ZTN0|NUDC_PSEU2 NADH pyrophosphatase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=nudC PE=3 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
           LR  M+  D+A         + G+A  +  W    RFCG CG  T+     +   C + +
Sbjct: 83  LRQFMLEGDFAV------FQMLGYAAQVSTWAREHRFCGACGRATVQIRGERAMFCEHDN 136

Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
              R+YPR+ P +I+LV     D +LL+R  RFV  M+S +AGF+EPGES E+ V RE  
Sbjct: 137 L--RLYPRISPSMIVLVT--RGDEILLARSPRFVTGMYSALAGFVEPGESAEDCVHREVM 192

Query: 272 EETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           EE  + +  + Y  SQ WP      P  +M+GF+A  +S EI    EE+E
Sbjct: 193 EEVQVRIKNLRYRGSQCWP-----FPHSMMLGFHAEYESGEIVPQAEEIE 237

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
225445438	441	PREDICTED: nudix hydrolase 19, chloropla	0.950	0.696	0.739	1e-139
255566955	400	mutt/nudix hydrolase, putative [Ricinus	0.953	0.77	0.743	1e-138
297808073	438	hypothetical protein ARALYDRAFT_488907 [	0.950	0.700	0.708	1e-136
15241252	438	nudix hydrolase 19 [Arabidopsis thaliana	0.950	0.700	0.702	1e-136
224122522	414	predicted protein [Populus trichocarpa]	0.950	0.741	0.730	1e-136
224088057	395	predicted protein [Populus trichocarpa]	0.950	0.777	0.689	1e-130
449443109	441	PREDICTED: nudix hydrolase 19, chloropla	0.950	0.696	0.699	1e-130
356514398	426	PREDICTED: nudix hydrolase 19, chloropla	0.928	0.704	0.704	1e-126
255636719	526	unknown [Glycine max]	0.944	0.579	0.638	1e-118
356513933	524	PREDICTED: LOW QUALITY PROTEIN: nudix hy	0.944	0.582	0.620	1e-114

>gi|225445438|ref|XP_002285069.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/323 (73%), Positives = 265/323 (82%), Gaps = 16/323 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MSTNL+T AFAGNP+RS TPK    FSP SA E+LK+RLL+N L                
Sbjct: 37  MSTNLKTHAFAGNPLRSTTPKPESLFSPISAFETLKSRLLENAL--------------LP 82

Query: 61  SSPDFKVLPFRKGRPLTYSG--PGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SSP FKVLPFRKGRPL  S    G++ P+WHLGW +LGD K FLANS  +  E + VYLG
Sbjct: 83  SSPIFKVLPFRKGRPLAISTRPTGDSPPIWHLGWFNLGDFKGFLANSEFQPTENSFVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
           SRS DDVVYW IDVS+  SL  +FG+K   FVELRT+MVATDW D+RAM+DLAIAGHARA
Sbjct: 143 SRSEDDVVYWGIDVSEDSSLVPQFGAKHFGFVELRTLMVATDWTDERAMSDLAIAGHARA 202

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHN+S FCGHCGEKT+P EAG+ KQCSNA CKKRIYPRVDPVVIMLVIDRENDR LL
Sbjct: 203 LLEWHNISHFCGHCGEKTVPMEAGRRKQCSNALCKKRIYPRVDPVVIMLVIDRENDRALL 262

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEETG+EVGEV+YH+SQPWPVGPNSMPC
Sbjct: 263 SRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGVEVGEVIYHSSQPWPVGPNSMPC 322

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
           QLM+GF+AYAKS EINVDKEELE
Sbjct: 323 QLMMGFFAYAKSVEINVDKEELE 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566955|ref|XP_002524460.1| mutt/nudix hydrolase, putative [Ricinus communis] gi|223536248|gb|EEF37900.1| mutt/nudix hydrolase, putative [Ricinus communis]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/324 (74%), Positives = 265/324 (81%), Gaps = 16/324 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP+ SKT K TDP SP  ALE+LK++ LD   H               
Sbjct: 1   MSINLRTHAFAGNPLLSKTLKPTDPLSPNLALETLKSQFLDGNSH-------------QL 47

Query: 61  SSPDFKVLPFRKGRPLTYSGPGET---APVWHLGWISLGDCKIFLANSGIELKEEALVYL 117
           SS +FKVLPFRKGRPL  S  G+     P WHLGWISL DCK  L NSG+EL  E+LVYL
Sbjct: 48  SSVNFKVLPFRKGRPLASSSIGDNDDLVPNWHLGWISLADCKTLLDNSGVELSGESLVYL 107

Query: 118 GSRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHAR 177
           GS+S DDVVYWA+DVS   SL +EFGSKQ CFVELRT+MVATDWA++RAM+DLAIAGHAR
Sbjct: 108 GSKSEDDVVYWAVDVSGEGSLVTEFGSKQFCFVELRTLMVATDWANERAMSDLAIAGHAR 167

Query: 178 ALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVL 237
           ALLEWH +S FCG CGEKT+PKEAG+ KQCSN  CKKRIYPRVDPVVIMLVIDREND VL
Sbjct: 168 ALLEWHKISNFCGQCGEKTVPKEAGRRKQCSNELCKKRIYPRVDPVVIMLVIDRENDCVL 227

Query: 238 LSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP 297
           LSRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPVGP+SMP
Sbjct: 228 LSRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPSSMP 287

Query: 298 CQLMVGFYAYAKSFEINVDKEELE 321
           CQLMVGF+AYAKS EINVDK ELE
Sbjct: 288 CQLMVGFFAYAKSLEINVDKAELE 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808073|ref|XP_002871920.1| hypothetical protein ARALYDRAFT_488907 [Arabidopsis lyrata subsp. lyrata] gi|297317757|gb|EFH48179.1| hypothetical protein ARALYDRAFT_488907 [Arabidopsis lyrata subsp. lyrata]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/323 (70%), Positives = 269/323 (83%), Gaps = 16/323 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +     H  P            
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLIPVIPNHSTP------------ 83

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L EE+LVYLG
Sbjct: 84  -SPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEESLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKEEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWH  S+FCG CG KT+PKEAG+ KQCSN +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHIASQFCGSCGGKTVPKEAGRRKQCSNETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPVGP+SMPC
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPSSMPC 321

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
           QLM+GF+A+AK+ +INVDKEELE
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELE 344

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241252|ref|NP_197507.1| nudix hydrolase 19 [Arabidopsis thaliana] gi|68565923|sp|Q94A82.1|NUD19_ARATH RecName: Full=Nudix hydrolase 19, chloroplastic; Short=AtNUDT19; AltName: Full=NADH pyrophosphatase NUDT19; Flags: Precursor gi|15146278|gb|AAK83622.1| AT5g20070/F28I16_220 [Arabidopsis thaliana] gi|19699164|gb|AAL90948.1| AT5g20070/F28I16_220 [Arabidopsis thaliana] gi|110742131|dbj|BAE98994.1| hypothetical protein [Arabidopsis thaliana] gi|332005407|gb|AED92790.1| nudix hydrolase 19 [Arabidopsis thaliana]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 227/323 (70%), Positives = 272/323 (84%), Gaps = 16/323 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +               + + S+
Sbjct: 36  MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLI-------------PVIPNHST 82

Query: 61  SSPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SPDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct: 83  PSPDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
            +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct: 143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct: 202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWPVGP+SMPC
Sbjct: 262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
           QLM+GF+A+AK+ +INVDKEELE
Sbjct: 322 QLMLGFFAFAKTLDINVDKEELE 344

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122522|ref|XP_002330502.1| predicted protein [Populus trichocarpa] gi|222872436|gb|EEF09567.1| predicted protein [Populus trichocarpa]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/323 (73%), Positives = 267/323 (82%), Gaps = 16/323 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MSTNLQ+ AFAGNP+RSKTPKSTDP SP  A E+LKT+LL NT                 
Sbjct: 1   MSTNLQSHAFAGNPLRSKTPKSTDPLSPPLAFETLKTQLLGNTHQL-------------- 46

Query: 61  SSPDFKVLPFRKGRPLTYSGP--GETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SS +FKVLPFRKGRPL  S    G+  P WHLGWISL DCK   + SG EL  + +VYLG
Sbjct: 47  SSLNFKVLPFRKGRPLASSSSTDGDLGPKWHLGWISLDDCKGLFSGSGDELSGDNMVYLG 106

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
           SRS +DVVYWAI+VS  +SL ++  SKQ CFVELRT+MVATDWAD+RAM+DLA+AGHA+A
Sbjct: 107 SRSEEDVVYWAINVSGENSLVTDSVSKQFCFVELRTLMVATDWADERAMSDLAVAGHAKA 166

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHN+SRFCG+CGEKTI  E+G+ KQCSN  C+++IYPRVDPVVIMLVIDRENDRVLL
Sbjct: 167 LLEWHNISRFCGYCGEKTITMESGRRKQCSNELCRRKIYPRVDPVVIMLVIDRENDRVLL 226

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
            RQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEET IEVGEV+YH+SQPWPVGP+SMPC
Sbjct: 227 GRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETAIEVGEVMYHSSQPWPVGPSSMPC 286

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
           QLMVGF+AYAKSFEINVDKEELE
Sbjct: 287 QLMVGFFAYAKSFEINVDKEELE 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088057|ref|XP_002308309.1| predicted protein [Populus trichocarpa] gi|222854285|gb|EEE91832.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/325 (68%), Positives = 262/325 (80%), Gaps = 18/325 (5%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           M  +LQ+ AFAGNP+RSKTP+ T P SP  ALE+LKT+L+DN              S  S
Sbjct: 1   MPISLQSHAFAGNPLRSKTPQPTHPLSPALALETLKTQLVDN--------------SHQS 46

Query: 61  SSPDFKVLPFRKGRPL--TYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SS +FKVLPFRKGRPL  + S   +  P WHLGWISL DCK   + SG+E   ++L YLG
Sbjct: 47  SSLNFKVLPFRKGRPLASSTSTDADLGPTWHLGWISLADCKGLFSASGVEFTGDSLFYLG 106

Query: 119 SRSADDV--VYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHA 176
           S S  DV  VYWAIDVS  +SL +EF S+Q+CF+ELRT+MVATDWAD++AM DLA+AGHA
Sbjct: 107 SSSEQDVDVVYWAIDVSGENSLFTEFDSEQVCFIELRTLMVATDWADKQAMVDLAVAGHA 166

Query: 177 RALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRV 236
           +ALLEWHN+SRFCG+CGEKT+P E+G+ KQCSN  C++++YPRVDPVVIMLVIDRENDR 
Sbjct: 167 KALLEWHNISRFCGYCGEKTVPMESGRRKQCSNELCRRKVYPRVDPVVIMLVIDRENDRA 226

Query: 237 LLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM 296
           LL RQSRFVPRMWSC+AGFIEPGESLEEAVRRETWEET IEVGEV+YH+SQPWPVGP+SM
Sbjct: 227 LLGRQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETAIEVGEVMYHSSQPWPVGPSSM 286

Query: 297 PCQLMVGFYAYAKSFEINVDKEELE 321
           PCQLMVGF+AYAKS EI VDK ELE
Sbjct: 287 PCQLMVGFFAYAKSLEIKVDKAELE 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443109|ref|XP_004139323.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Cucumis sativus] gi|449520651|ref|XP_004167347.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/323 (69%), Positives = 261/323 (80%), Gaps = 16/323 (4%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS +L + AFAGNPI+ KTPK  +PFS +SALESL ++LL+NT                S
Sbjct: 40  MSISLNSHAFAGNPIKLKTPKPENPFSASSALESLNSQLLNNTHF--------------S 85

Query: 61  SSPDFKVLPFRKGRPL-TYSG-PGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
           SS +FKVLPF+KG+PL T+S  P +T+  WHLGWI L D K   ANS +EL  +  VYLG
Sbjct: 86  SSINFKVLPFKKGKPLATFSARPNDTSSTWHLGWIDLTDFKALFANSTLELTGDLFVYLG 145

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
               ++ VYW IDVS  + L SEF SK LCFVE+RT+MVA+DWAD RAM +LAIAGHARA
Sbjct: 146 YLDEENSVYWGIDVSSEEVLVSEFASKSLCFVEVRTLMVASDWADARAMGELAIAGHARA 205

Query: 179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
           LLEWHNVS+FCGHCG KT+P EAGK KQCSN SCKK++YPRVDPVVIMLVIDRENDR LL
Sbjct: 206 LLEWHNVSKFCGHCGGKTVPVEAGKRKQCSNPSCKKKVYPRVDPVVIMLVIDRENDRALL 265

Query: 239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
           S+QSRFVPRMWSC+AGFIEPGESLEEAV+RETWEETGIEVGEVVYH+SQPWPVGP++MPC
Sbjct: 266 SKQSRFVPRMWSCLAGFIEPGESLEEAVKRETWEETGIEVGEVVYHSSQPWPVGPSNMPC 325

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
           QLMVGF+AYAKSF+INVDK ELE
Sbjct: 326 QLMVGFFAYAKSFDINVDKGELE 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514398|ref|XP_003525893.1| PREDICTED: nudix hydrolase 19, chloroplastic-like [Glycine max]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/322 (70%), Positives = 253/322 (78%), Gaps = 22/322 (6%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL+T AFAGNP+RS  P   DPFSP SALE+L TR+LD              +  SS
Sbjct: 29  MSINLRTHAFAGNPLRS--PNRVDPFSPASALETLTTRILDA-------------AHVSS 73

Query: 61  SSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSR 120
            S DFKVLPFR GR L  S  G+T   W LGWI+L + K  L   G +L  ++ VYLGS 
Sbjct: 74  PSVDFKVLPFRNGRVLASSESGDT---WRLGWIALEEVKGLL---GADLSADSFVYLGSD 127

Query: 121 S-ADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARAL 179
           S +D VVYWAIDVS    L +EF   +LCFVELRT+MVATDW D + M +LAIAGHARAL
Sbjct: 128 SDSDSVVYWAIDVSRESGLVTEFSGVRLCFVELRTLMVATDWVDLKTMGNLAIAGHARAL 187

Query: 180 LEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLS 239
           LEWH +SRFCGHCGEKT+P EAG+ KQCSN SCK+RIYPR+DPVVIMLVIDRENDR LLS
Sbjct: 188 LEWHKISRFCGHCGEKTVPMEAGRRKQCSNESCKQRIYPRLDPVVIMLVIDRENDRALLS 247

Query: 240 RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ 299
           +QSRFVPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPVGPNSMPCQ
Sbjct: 248 KQSRFVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVGPNSMPCQ 307

Query: 300 LMVGFYAYAKSFEINVDKEELE 321
           LMVGF+AYAKS EINVDKEELE
Sbjct: 308 LMVGFFAYAKSLEINVDKEELE 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636719|gb|ACU18695.1| unknown [Glycine max]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/326 (63%), Positives = 243/326 (74%), Gaps = 21/326 (6%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           MS NL + AF+GNP+ SK P   +P SP++ALE+L  R+  N  H  P            
Sbjct: 39  MSINLHSHAFSGNPLLSKFPLPGNPLSPSAALEALNARISLNNTHSSP------------ 86

Query: 61  SSPDFKVLPFRKGRPLTYS--GPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SP FKVLPFR GRPL  S  G G++ P+W LGW+ L D +    NSG +L  + LVYL 
Sbjct: 87  -SPSFKVLPFRNGRPLASSSAGTGDSPPIWDLGWLGLDDLRGIFENSGAQLSVDLLVYLN 145

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGSKQ---LCFVELRTVMVATDWADQRAMADLAIAGH 175
           S S DD VYWAIDVSD      E GS     LCFVELRT+MVATDW+D + M +LAIAGH
Sbjct: 146 SSSEDDAVYWAIDVSDK---VPELGSNNAAGLCFVELRTLMVATDWSDLQLMGNLAIAGH 202

Query: 176 ARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDR 235
           A+ALLEWHN SRFCGHCGEKT+P EAG+ K+CSN SCKKRIYPRVDPVVIMLVIDRENDR
Sbjct: 203 AKALLEWHNFSRFCGHCGEKTVPMEAGRRKKCSNDSCKKRIYPRVDPVVIMLVIDRENDR 262

Query: 236 VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS 295
            LL+++   + R+++C++GF EPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPV PNS
Sbjct: 263 ALLAKRPMRIARLYTCLSGFTEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVAPNS 322

Query: 296 MPCQLMVGFYAYAKSFEINVDKEELE 321
           +PCQLMVGF+AYAKS EI VDK ELE
Sbjct: 323 IPCQLMVGFFAYAKSLEITVDKTELE 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513933|ref|XP_003525662.1| PREDICTED: LOW QUALITY PROTEIN: nudix hydrolase 19, chloroplastic-like [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/327 (62%), Positives = 245/327 (74%), Gaps = 22/327 (6%)

Query: 1   MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHSSLSSSSS 60
           M  +L + AF+GNP+ SK P S  P SP+SALE+LK ++  N  H  P            
Sbjct: 1   MFLSLHSHAFSGNPLLSKFPLSGHPLSPSSALEALKAQIGLNNTHSSP------------ 48

Query: 61  SSPDFKVLPFRKGRPLTYS--GPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
            SP FKVLPFR GRPL  S  G G++ P+WHLGW+ L + +    NSG +L  ++LVYL 
Sbjct: 49  -SPSFKVLPFRNGRPLASSAAGSGDSPPIWHLGWLGLDEIRGIFENSGAQLSVDSLVYLS 107

Query: 119 SRSADDVVYWAIDVSDGDSLASEFGS--KQLCFVELRTVMVATDWADQRAMADLAIAGHA 176
           S + DD VYWAIDVSD      E GS  ++LCFV+LRT+MVATDW D   M +LAIAGHA
Sbjct: 108 SSAEDDAVYWAIDVSDK---VPELGSNKERLCFVDLRTLMVATDWXDLHVMGNLAIAGHA 164

Query: 177 RALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI--DREND 234
           +ALLEWHN+SRFCGHCGEKT+P EAG+ K+CSN SCKKRIYPRV+PVVIMLVI  D E +
Sbjct: 165 KALLEWHNISRFCGHCGEKTVPMEAGRRKKCSNDSCKKRIYPRVEPVVIMLVIVIDXEKE 224

Query: 235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN 294
           RVLL+++   + R+++C++GF EPGESLEEAVRRETWEETGIEVGEVVYH+SQPWPV PN
Sbjct: 225 RVLLAKRPMHIARLYTCLSGFTEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVAPN 284

Query: 295 SMPCQLMVGFYAYAKSFEINVDKEELE 321
           S+PCQLMVGF+AYAKS EI VDK ELE
Sbjct: 285 SIPCQLMVGFFAYAKSLEITVDKTELE 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2147665	438	NUDX19 "nudix hydrolase homolo	0.950	0.700	0.702	5.5e-125
UNIPROTKB|J9NRY3	460	NUDT12 "Uncharacterized protei	0.653	0.458	0.423	2.7e-36
UNIPROTKB|E2RGZ2	426	NUDT12 "Uncharacterized protei	0.653	0.495	0.420	4e-35
UNIPROTKB|Q29RH3	444	NUDT12 "Peroxisomal NADH pyrop	0.653	0.475	0.413	5.1e-35
UNIPROTKB|E7EM93	444	NUDT12 "Peroxisomal NADH pyrop	0.653	0.475	0.413	6.5e-35
UNIPROTKB|Q9BQG2	462	NUDT12 "Peroxisomal NADH pyrop	0.653	0.456	0.413	6.5e-35
MGI|MGI:1915243	462	Nudt12 "nudix (nucleoside diph	0.656	0.458	0.398	4.6e-34
ZFIN|ZDB-GENE-050417-164	433	zgc:112020 "zgc:112020" [Danio	0.600	0.448	0.410	7.4e-34
UNIPROTKB|E1C2E5	465	NUDT12 "Uncharacterized protei	0.458	0.318	0.477	1.5e-33
POMBASE|SPBC1778.03c	376	SPBC1778.03c "NADH pyrophospha	0.619	0.531	0.375	7.9e-30

TAIR|locus:2147665 NUDX19 "nudix hydrolase homolog 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
 Identities = 227/323 (70%), Positives = 269/323 (83%)

Query:     1 MSTNLQTQAFAGNPIRSKTPKSTDPFSPTSALESLKTRLLDNTLHCQPQKHHXXXXXXXX 60
             MS NL+T AFAGNP++SKTPKSTDPFSPTSA ESLKT +     H  P            
Sbjct:    36 MSMNLKTHAFAGNPLKSKTPKSTDPFSPTSAFESLKTLIPVIPNHSTPS----------- 84

Query:    61 XXPDFKVLPFRKGRPLTYSGPGE--TAPVWHLGWISLGDCKIFLANSGIELKEEALVYLG 118
               PDFKVLPF KGRPL +S  G+  T P+WHLGW+SL DCK+ LA+ G++L E++LVYLG
Sbjct:    85 --PDFKVLPFSKGRPLVFSSGGDANTTPIWHLGWVSLADCKVLLASCGVDLNEDSLVYLG 142

Query:   119 SRSADDVVYWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARA 178
              +  +D+VYWA+D+++ D   SE G ++LCFVELRT+MVA DWADQRAM +LAIAG+ARA
Sbjct:   143 PKLEEDLVYWAVDLAE-DGFVSELGGRKLCFVELRTLMVAADWADQRAMDELAIAGNARA 201

Query:   179 LLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLL 238
             LLEWHNVS+FCG CG KT PKEAG+ KQCS+ +C+KR+YPRVDPVVIMLVIDRENDR LL
Sbjct:   202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKRVYPRVDPVVIMLVIDRENDRALL 261

Query:   239 SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC 298
             SRQSR+VPRMWSC+AGFIEPGESLEEAVRRETWEETGIEVG+VVYH+SQPWPVGP+SMPC
Sbjct:   262 SRQSRYVPRMWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQPWPVGPSSMPC 321

Query:   299 QLMVGFYAYAKSFEINVDKEELE 321
             QLM+GF+A+AK+ +INVDKEELE
Sbjct:   322 QLMLGFFAFAKTLDINVDKEELE 344

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|J9NRY3 NUDT12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 100/236 (42%), Positives = 134/236 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADDVVYW-AIDVSDGDSLASE-FGSK-QLCFVE 151
             KI L   G+EL  K+E+  Y G   R  D +V W A+ V   DS+A+E F  + + C+  
Sbjct:   192 KITLIFLGVELEMKKESFNYAGEVPREEDGLVAWFALGV---DSVAAEEFKQRHENCYF- 247

Query:   152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
             L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct:   248 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCLKED 304

Query:   212 CKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
             C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct:   305 CPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 364

Query:   266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             VRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   365 VRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 415

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RGZ2 NUDT12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 100/238 (42%), Positives = 134/238 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADDVVYW-AIDVSDGDSLASE-FGSK-QLCFVE 151
             KI L   G+EL  K+E+  Y G   R  D +V W A+ V   DS+A+E F  + + C+  
Sbjct:   156 KITLIFLGVELEMKKESFNYAGEVPREEDGLVAWFALGV---DSVAAEEFKQRHENCYF- 211

Query:   152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
             L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C    
Sbjct:   212 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCLKED 268

Query:   212 CKK------RIYPRV--DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
             C          YPRV  DPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E
Sbjct:   269 CPSLHGVHNTSYPRVETDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIE 328

Query:   264 EAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             +AVRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   329 DAVRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 381

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q29RH3 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Bos taurus (taxid:9913)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 98/237 (41%), Positives = 135/237 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLG--SRSADD-VVYW-AIDVSDGDSLASE-FGSK-QLCFV 150
             KI L   G+EL  K+E   Y G  S+  +D +V W A+ +   D++A+E F  + + C+ 
Sbjct:   175 KITLIFLGVELEMKKEFFNYAGEISKEEEDGLVAWFALGI---DTVAAEEFKQRHENCYF 231

Query:   151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
              L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   
Sbjct:   232 -LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRVCLKE 287

Query:   211 SCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
              C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct:   288 DCPSLHGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 347

Query:   265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             AVRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   348 AVRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 399

GO:0005777 "peroxisome" evidence=IEA

GO:0035529 "NADH pyrophosphatase activity" evidence=IEA

GO:0019677 "NAD catabolic process" evidence=IEA

GO:0006742 "NADP catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000210 "NAD+ diphosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E7EM93 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 98/237 (41%), Positives = 133/237 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADD-VVYW-AIDVSDGDSLASE-FGSK-QLCFV 150
             KI L   G+EL  K++ L Y G   R  +D +V W A+ +   D +A+E F  + + C+ 
Sbjct:   175 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 231

Query:   151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
              L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   
Sbjct:   232 -LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKE 287

Query:   211 SCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
              C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct:   288 DCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 347

Query:   265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             AVRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   348 AVRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIE 399

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9BQG2 NUDT12 "Peroxisomal NADH pyrophosphatase NUDT12" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 98/237 (41%), Positives = 133/237 (56%)

Query:    99 KIFLANSGIEL--KEEALVYLGS--RSADD-VVYW-AIDVSDGDSLASE-FGSK-QLCFV 150
             KI L   G+EL  K++ L Y G   R  +D +V W A+ +   D +A+E F  + + C+ 
Sbjct:   193 KITLIFLGVELEIKDKLLNYAGEVPREEEDGLVAWFALGI---DPIAAEEFKQRHENCYF 249

Query:   151 ELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNA 210
              L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   
Sbjct:   250 -LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGNATKIEEGGYKRLCLKE 305

Query:   211 SCKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
              C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+
Sbjct:   306 DCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIED 365

Query:   265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             AVRRE  EE+G++VG V Y   QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   366 AVRREVEEESGVKVGHVQYVACQPWP-----MPSSLMIGCLALAVSTEIKVDKNEIE 417

GO:0046872 "metal ion binding" evidence=IEA

GO:0000210 "NAD+ diphosphatase activity" evidence=IDA

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0006742 "NADP catabolic process" evidence=IDA

GO:0019677 "NAD catabolic process" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:1915243 Nudt12 "nudix (nucleoside diphosphate linked moiety X)-type motif 12" [Mus musculus (taxid:10090)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 94/236 (39%), Positives = 129/236 (54%)

Query:    99 KIFLANSGIEL--KEEALVYLGS---RSADDVVYW-AIDVSDGDSLASEFGSK-QLCFVE 151
             KI L   G+EL  ++ +    G       D +V W A+ +  G   A EF  + + C+  
Sbjct:   193 KITLVFLGVELEMRKGSPAQAGGVPEEEEDGLVAWFALGIEPG--AAEEFKQRHENCYF- 249

Query:   152 LRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNAS 211
             L   M A     ++   +  +   AR++L WH+  +FC  CG  T  +E G  + C   +
Sbjct:   250 LHPPMPALLQLKEK---EAGVVAQARSVLAWHSRYKFCPTCGSATKIEEGGYKRVCVRET 306

Query:   212 CKK------RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEA 265
             C          YPRVDPVVIM VI  +  + LL RQ RF P M++C+AGFIEPGE++E+A
Sbjct:   307 CPSLQGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMFTCLAGFIEPGETIEDA 366

Query:   266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             VRRE  EE+G++VG V Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   367 VRREVEEESGVKVGHVQYVSCQPWP-----MPSSLMIGCLAVAVSTEIKVDKNEIE 417

GO:0000210 "NAD+ diphosphatase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO

GO:0006742 "NADP catabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019677 "NAD catabolic process" evidence=ISO

GO:0035529 "NADH pyrophosphatase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050417-164 zgc:112020 "zgc:112020" [Danio rerio (taxid:7955)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 89/217 (41%), Positives = 124/217 (57%)

Query:   114 LVYLGSRSADDVVYWAIDVSDG--DSLASEFGSKQLCFVELRTVMVAT-DWADQRAMADL 170
             LV+LG +  + V ++A+   D   D L +  G    CF  L+  M      +D+    D 
Sbjct:   186 LVFLGVQKKE-VAWFAVSTEDEPTDLLETLEGE---CFF-LQPAMPGLLTMSDE----DA 236

Query:   171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDPVV 224
              +   AR++L WH+  RFC  CG  T  ++ G  + C  A C+         YPRVDPVV
Sbjct:   237 GVVAQARSVLAWHSRYRFCPTCGSNTRVEDGGYKRTCLRAGCRSLQGVYNTCYPRVDPVV 296

Query:   225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH 284
             IMLVI  + ++ LL R+  F P M+SC+AGFIEPGE +E AVRRE  EE+G++V  + Y 
Sbjct:   297 IMLVIHPDGNQCLLGRKKIFPPGMFSCLAGFIEPGECVEAAVRREVQEESGVQVSAIQYV 356

Query:   285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
              SQPWP     MP  LM+G +  A + +INVD++ELE
Sbjct:   357 CSQPWP-----MPSCLMIGCHCVALTTDINVDQQELE 388

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C2E5 NUDT12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 76/159 (47%), Positives = 96/159 (60%)

Query:   169 DLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKK------RIYPRVDP 222
             +  +   AR++L WH+  RFC  CG  T  +E G  K C    C          YPRVDP
Sbjct:   267 EAGVVAQARSILAWHSRYRFCPTCGSATKIEEGGYKKTCVKEDCPSLQGVHNTSYPRVDP 326

Query:   223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
             VVIM VI  + +  LL RQ RF P M++C+AGF+EPGE++E+AVRRE  EE G++VG V 
Sbjct:   327 VVIMQVIHPDGNHCLLGRQKRFPPGMFTCLAGFVEPGETIEDAVRREVEEEAGVKVGHVQ 386

Query:   283 YHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             Y + QPWP     MP  LM+G  A A S EI VDK E+E
Sbjct:   387 YVSCQPWP-----MPSSLMIGCLAVAVSTEIRVDKNEIE 420

GO:0046872 "metal ion binding" evidence=IEA

GO:0000210 "NAD+ diphosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0006742 "NADP catabolic process" evidence=IEA

GO:0019677 "NAD catabolic process" evidence=IEA

GO:0035529 "NADH pyrophosphatase activity" evidence=IEA

POMBASE|SPBC1778.03c SPBC1778.03c "NADH pyrophosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 86/229 (37%), Positives = 127/229 (55%)

Query:   114 LVYLGSRSADDVV-YW------AIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRA 166
             LVY+G+   +     W      AID++  D L          FV LR++   T+   Q +
Sbjct:   103 LVYMGNEERNGPTDNWSQHNVFAIDITGIDELQQSIRDNGGTFVNLRSIF--TEQY-QLS 159

Query:   167 MADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSN------ASC--KKRI-- 216
              +D      AR++L+W +  RFC  CG++ IP   G    CS+      ++C  KK I  
Sbjct:   160 ASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVCSDVLLNDDSNCPSKKGINN 219

Query:   217 --YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET 274
               YPR DP VIM+++  +   +LL R  R    +++C+AGF+EPGESLEEAV RET+EE+
Sbjct:   220 YQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRETYEES 279

Query:   275 GIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKE-ELE 321
             G++V +V+Y+ SQPWP      P  LM+  +  A K+ +I  DK+ ELE
Sbjct:   280 GVDVEKVLYYASQPWP-----FPQSLMLACFGIARKNAKIQRDKDLELE 323

GO:0000210 "NAD+ diphosphatase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A82	NUD19_ARATH	3, ., 6, ., 1, ., 2, 2	0.7027	0.9504	0.7009	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.963
3rd Layer	3.6.1.22	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	3e-66
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	2e-53
PRK00241	256	PRK00241, nudC, NADH pyrophosphatase; Reviewed	2e-51
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-17
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	1e-14
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	1e-12
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	2e-12
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	3e-11
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	6e-11
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	7e-11
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	1e-10
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	3e-10
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	6e-10
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	2e-09
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	2e-09
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	3e-09
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	9e-09
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	2e-08
PRK10729	202	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; P	4e-08
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	5e-08
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	6e-08
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	7e-08
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	8e-08
TIGR00052	185	TIGR00052, TIGR00052, nudix-type nucleoside diphos	9e-08
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	1e-07
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	2e-07
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	5e-07
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	6e-07
pfam09296	91	pfam09296, NUDIX-like, NADH pyrophosphatase-like r	9e-07
cd04695	131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	1e-06
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	1e-06
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	2e-06
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	2e-06
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	3e-06
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	4e-06
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	4e-06
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	5e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	6e-06
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	1e-05
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	3e-05
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	3e-05
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	3e-05
pfam09297	32	pfam09297, zf-NADH-PPase, NADH pyrophosphatase zin	3e-05
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	5e-05
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	7e-05
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	9e-05
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	1e-04
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	1e-04
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	2e-04
cd04689	125	cd04689, Nudix_Hydrolase_30, Members of the Nudix	2e-04
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	3e-04
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	5e-04
PRK15009	191	PRK15009, PRK15009, GDP-mannose pyrophosphatase Nu	6e-04
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	8e-04
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	0.001
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	0.002
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	0.003
PRK10546	135	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside t	0.004

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score =  209 bits (533), Expect = 3e-66
 Identities = 87/242 (35%), Positives = 122/242 (50%), Gaps = 30/242 (12%)

Query: 88  WHLGWISLGDCKIFLAN--------SGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLA 139
               W+   + K+ L +          ++L  EAL+ +G         +A+ + +   L 
Sbjct: 18  DSTLWLVFSEGKLLLKDGELPFGAAENLDLVGEALLGIGEWG--GEPVFAVWLVEEIELP 75

Query: 140 SEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPK 199
             F       V+LR+++      +        +A  A  LLEW+   RFCG CG KT P+
Sbjct: 76  EPFE-----LVDLRSLL-----TELDE-GLFGLAARAVQLLEWYRSHRFCGRCGTKTYPR 124

Query: 200 EAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPG 259
           E G  + C    C    +PR+DP VI+ VI    D +LL+R  R  P M+S +AGF+EPG
Sbjct: 125 EGGWARVCPK--CGHEHFPRIDPCVIVAVIRG--DEILLARHPRHFPGMYSLLAGFVEPG 180

Query: 260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
           E+LE+AV RE +EE GI+V  V Y  SQPWP      P  LM+GF A   S EI  D+ E
Sbjct: 181 ETLEQAVAREVFEEVGIKVKNVRYVGSQPWP-----FPHSLMLGFMAEYDSGEITPDEGE 235

Query: 320 LE 321
           LE
Sbjct: 236 LE 237

Length = 279

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score =  171 bits (435), Expect = 2e-53
 Identities = 60/100 (60%), Positives = 69/100 (69%), Gaps = 6/100 (6%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           P VI+LVID   DR+LL+RQ RF P M+S +AGF+EPGESLEEAVRRE  EE GI V  +
Sbjct: 1   PAVIVLVID-GGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI 59

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
            Y  SQPWP      P  LM+GF A A S EI VD +ELE
Sbjct: 60  RYVGSQPWP-----FPSSLMLGFTAEADSGEIVVDDDELE 94

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|234699 PRK00241, nudC, NADH pyrophosphatase; Reviewed

 Score =  170 bits (433), Expect = 2e-51
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 15/177 (8%)

Query: 150 VELRTVMVATDWADQRAMADL-----AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKL 204
           V    +    +    R + DL      + G A  L E++   RFCG+CG    P +    
Sbjct: 59  VRQDPLR-GHEMGSLRQLLDLDDGLFQLLGRAVQLAEFYRSHRFCGYCGHPMHPSKTEWA 117

Query: 205 KQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
             C +  C++R YPR+ P +I+ V  R  D +LL+R  R    +++ +AGF+E GE+LE+
Sbjct: 118 MLCPH--CRERYYPRIAPCIIVAV--RRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQ 173

Query: 265 AVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
            V RE  EE+GI+V  + Y  SQPWP  P+S+    M+GF+A   S EI  D +E+ 
Sbjct: 174 CVAREVMEESGIKVKNLRYVGSQPWPF-PHSL----MLGFHADYDSGEIVFDPKEIA 225

Length = 256

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
              + +V+  E+  VLL R+SR    P +W    G +EPGES EEA  RE  EETG+ V 
Sbjct: 2   RRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVL 61

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS--FEINVDKEELEG 322
            ++      +P  P     + +  F A       E   +++E+  
Sbjct: 62  LLLLLGVLEYP-APGRDGGEHVHVFLAELLGGEPEPQPNEDEVSE 105

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
           V +  VI  E+ RVLL R++     +W    G +EPGE+LEEA  RE  EETG++V  + 
Sbjct: 1   VAVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLR 60

Query: 283 YH 284
             
Sbjct: 61  LL 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV-- 281
             +++++ E   VLL  Q R     W    G +E GESLEE  RRE  EETG+EV E+  
Sbjct: 10  AGVILLN-EQGEVLL--QKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL 66

Query: 282 --VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEGT 323
             VY   + +   PN    Q +V  Y   K F   +  +  E  
Sbjct: 67  LGVYSGKEFYVK-PNGDDEQYIVTLYYVTKVFGGKLVPDGDETL 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
             D V ++   D  + +V+L RQ R      +    AG I+PGE  EEA RRE  EETG 
Sbjct: 1   HPDAVAVLPYDD--DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGY 58

Query: 277 EVGEVVY 283
           E G++  
Sbjct: 59  EAGDLEK 65

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 223 VVIMLVIDRENDRVLL---SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           V +  +I ++  R+L+   S+  R  P  W    G +E GE+ EEA++RE +EETG+ V
Sbjct: 2   VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 225 IMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           + ++I  E+  +L+ R++R   +       GF++PGES EEA+ RE  EETG++V E+ Y
Sbjct: 4   VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY 63

Query: 284 HTSQP 288
             S P
Sbjct: 64  LFSLP 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
           PR   VV          RVLL R+S      W  + G IE GES  EA RRE  EETG++
Sbjct: 1   PRSVLVVP--YRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLD 58

Query: 278 VGEVV 282
              + 
Sbjct: 59  PERLT 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 226 MLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT 285
           +  I   +  +LL+R+       W+   G +EPGE+ EE   RE  EETG+ +  +    
Sbjct: 5   LCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVG 64

Query: 286 SQPWPV 291
              +P 
Sbjct: 65  IIKFPF 70

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE-EAVRRETWEETGI 276
              D  V +LV       VLL  Q R    +W    G +EPGE L  EA  RE  EETG+
Sbjct: 8   KVRDVAVAVLVGRDGPGEVLL-AQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66

Query: 277 EVGEVVYHTS---QPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
            V +          P P   +S+  +    F+       + V  E L 
Sbjct: 67  RVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLS 114

Length = 161

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--- 278
           P V  +V D +  RVLL R  R    +W+   G +EPGES  +   RE  EETG++V   
Sbjct: 3   PGVTAVVRD-DEGRVLLIR--RSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVT 59

Query: 279 GEVVYHT--SQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
           G V  +T            +   L + F       E+ V  +E 
Sbjct: 60  GLVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDES 103

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETG--IEVGE 280
           V +  +I R    +L+ R +      W+   GF+E GE+LEEA RRE  EETG  + V E
Sbjct: 11  VAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE 70

Query: 281 VVYHTSQP 288
           ++     P
Sbjct: 71  LLAVFDDP 78

Length = 145

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIE 277
            +P +I+  +     +VLL R++   PR   W+  AGF+E GE+ E+   RETWEE G  
Sbjct: 10  QNPKIIVGCVPEWEGKVLLCRRA-IEPRHGFWTLPAGFMENGETTEQGALRETWEEAGAR 68

Query: 278 V 278
           V
Sbjct: 69  V 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           LVI   +D +LL R      R W    G +EPGE++EEA RRE WEETG E+G +  
Sbjct: 4   LVICFYDDGLLLVRHKD---RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 18/26 (69%), Positives = 19/26 (73%)

Query: 253 AGFIEPGESLEEAVRRETWEETGIEV 278
           AG +EPGESL EA  RET EETG  V
Sbjct: 30  AGHLEPGESLIEAAVRETLEETGWHV 55

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE---VGEVVY 283
           LV++ E + VL+ ++    P  W    G ++PGE + +   RE  EETGI+   V  V +
Sbjct: 8   LVLN-EKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGF 66

Query: 284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELE 321
             + P   G + +   C+L         SF+IN D  E+ 
Sbjct: 67  RHAHPGAFGKSDLYFICRLK------PLSFDINFDTSEIA 100

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEEA 265
           ++ I+ R    V +L  D   D V+L  Q R         P +   +AG IE GES+E+ 
Sbjct: 42  RREIFERGHAAV-LLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDV 100

Query: 266 VRRETWEETGIEVGE---VVYHTSQPWPVGPNSMPCQLMVG 303
            RRE  EE G+ VG    V+ + + P   G  S    +MVG
Sbjct: 101 ARREAIEEAGLIVGRTKPVLSYLASP---GGTSERSSIMVG 138

Length = 202

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGI--EVG 279
           V  +V      RVLL R++   P   +WS   G +E GE+LE+A  RE  EETG+  EVG
Sbjct: 3   VGAVVFR--GGRVLLVRRAN-PPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG 59

Query: 280 EVVYHT 285
            ++   
Sbjct: 60  RLLTVV 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETG 275
            R+   V   VI   + R+LL+R  + +    +W    G +EPGE++E+A+ RE  EE G
Sbjct: 3   KRIH--VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELG 60

Query: 276 IEVGEVVYHTSQPW 289
           IEV       ++P 
Sbjct: 61  IEVTA-----ARPL 69

Length = 312

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 12/58 (20%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGF-------IEPGESLEEAVRRETWEETGIEV 278
           +I  ++ R+L+++  R   +      G        +EPGE+ E+A+ RE  EE GIEV
Sbjct: 7   IIIDDDGRILIAQ--RPAGKHL---GGLWEFPGGKVEPGETPEQALVRELREELGIEV 59

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 227 LVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +++D + DRVLL R        P  W    G +EPGES E+A RRE  EETGI V
Sbjct: 6   VLLDPD-DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase, YffH/AdpP family

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSR-------FVPRMWSCIAGFIEPGESLEEA 265
            + IY R +   ++L  D + D V+L  Q R         P +    AG +E GES E+ 
Sbjct: 37  TREIYDRGNAAAVLL-YDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDV 95

Query: 266 VRRETWEETGIEVGEV 281
            RRE  EE G +V  +
Sbjct: 96  ARREAIEEAGYQVKNL 111

Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans [Unknown function, Enzymes of unknown specificity]. Length = 185

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           V+   + RVLL R   + P  W    G +E GE+  EA RRE  EE GI +  V  
Sbjct: 6   VVTDADGRVLLVR-HTYGP-GWYLPGGGLERGETFAEAARRELLEELGIRLAVVAE 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           VI R   RVLL R+S      W+   G IEPGE+  +A RRE  EETG++  +++Y
Sbjct: 5   VICRRGGRVLLVRKSG---SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLY 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           P V +++ + +  +V + R+    P  W    G I+ GE  E+A  RE  EETG++   V
Sbjct: 4   PNVGVVLFNEDG-KVFVGRRIDT-PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSV 61

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 229 IDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV------GEV 281
                  VLL  R        WS   G +EPGE+  EA  RE  EETGI        G +
Sbjct: 11  GSDGGIEVLLIHRPRGDD---WSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTI 67

Query: 282 VYHTS 286
            Y  S
Sbjct: 68  RYWFS 72

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|220167 pfam09296, NUDIX-like, NADH pyrophosphatase-like rudimentary NUDIX domain

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 28/116 (24%)

Query: 67  VLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVV 126
            L F  G+ L     G              +  +FL                    +   
Sbjct: 4   WLLFNGGQLLLKDNDGALPRGEAAELGLPLEEAVFLGLL-----------------EGRP 46

Query: 127 YWAIDVSDGDSLASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEW 182
            +A+DVS+   L          FV+LR +++  D           +AG AR LL W
Sbjct: 47  VFAVDVSEDAELPEGGE-----FVDLRALLLLLD------EELAGLAGRARQLLHW 91

The N-terminal domain in NADH pyrophosphatase, which has a rudiment Nudix fold according to SCOP. Length = 91

>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
            V++  +D+E  +VLL ++ + +   W  +AG +E GE+  +A  RE  EETGI + E+
Sbjct: 4   GVLLRSLDKE-TKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            V++ +  +VLL+   +     W    G I+P ESL EA  RE  EETGIE+
Sbjct: 8   FVVNPDRGKVLLTHHRKL--GSWLQPGGHIDPDESLLEAALRELREETGIEL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 218 PRVDPVVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
           PRV   V +L       +VLL  R+       W+   G +E GES EE   RE  EETG+
Sbjct: 1   PRVGVGVFVL---NPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57

Query: 277 EVGEVVYHT 285
            +  V + T
Sbjct: 58  HIENVQFLT 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 222 PVVIMLVIDRENDRVL-LSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           PV +++VI   +  VL L R     P  W  + G +E GE+  +   RE  EETGI+V
Sbjct: 7   PVSVLVVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62

Length = 148

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGI 276
           ++  VI      VLL ++++   R  W   AG +EPGE++EEAV+RE  EETG+
Sbjct: 2   IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGL 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +VI  +   +LL R+ +     +    G IE GE+ EEA +RE  EE G++V
Sbjct: 5   IVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 231 RENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
             + ++LL +++   +  R W    G IEPGES EEA+ RE  EETG+ V
Sbjct: 8   PRDGKLLLIQKNGGPYEGR-WDLPGGGIEPGESPEEALHREVLEETGLTV 56

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           LVI R  D+ LL+   R   R      G +EPGE+ +EA  RE  EETG  V E+ Y
Sbjct: 28  LVIPRYKDQWLLTEHKR---RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY 81

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 246 PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP 290
           P  W    G  E GE+  E V RE  EE G+ + E    +  PW 
Sbjct: 28  PGHWDLPGGHREGGETPLECVLRELLEEIGLTLPE----SRIPWF 68

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 222 PVVIMLVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            VV +L  D   D+VLL R+S      P   +   G IE GES EEA+ RE  EE G++ 
Sbjct: 2   GVVGVLFSD---DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDP 58

Query: 279 GEVVYHTSQPWP 290
               Y  S   P
Sbjct: 59  LSYTYLCSLYHP 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 224 VIMLVIDRENDRVLL--SRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
            I          VLL  SR++    VP+      G  E  ES  EA  RE WEE G+  G
Sbjct: 5   AIPYRETGGEVEVLLVTSRRTGRWIVPK------GGPEKDESPAEAAAREAWEEAGV-RG 57

Query: 280 EVV 282
           ++ 
Sbjct: 58  KIG 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 233 NDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           + ++LL+R++   R  P +W    G +E GE+L EA  RE  EETG+ +  +
Sbjct: 12  DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPI 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
           +I   + R+LL R +++   +W    G +E GE+LEEA++RE  EETG+++ ++ +   Q
Sbjct: 8   LIYAPDGRILLVRTTKW-RGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQ 66

Query: 288 -----PWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
                     P      ++  F+A     E+  ++E +E
Sbjct: 67  EAIFSEEFHKPAHF---VLFDFFARTDGTEVTPNEEIVE 102

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|204192 pfam09297, zf-NADH-PPase, NADH pyrophosphatase zinc ribbon domain

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 186 SRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY 217
            RFCG CG  T P E G  + C   SC    Y
Sbjct: 3   HRFCGRCGAPTEPAEGGWARVC--PSCGHEHY 32

This domain is found in between two duplicated NUDIX domains. It has a zinc ribbon structure. Length = 32

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 227 LVIDRENDRV---LLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++  R N+ +   LL          W    G +EPGE   EA  RET EETGI  
Sbjct: 8   IIYRRLNNEIEYLLLQASYGH----WDFPKGHVEPGEDDLEAALRETEEETGITA 58

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 224 VIMLVIDREND-RVLLSRQSRFVPRM------WSCIAGFIEPG-ESLEEAVRRETWEETG 275
           V++L+++RE + RVLL++++     +       +   G ++PG E       RE  EE G
Sbjct: 5   VLVLLVEREGELRVLLTKRAS---HLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIG 61

Query: 276 IEVGEV 281
           +    V
Sbjct: 62  LPPDSV 67

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++ ++LL R+      +WS   G+ + G S  E V +E  EETG++V
Sbjct: 11  KDGKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 227 LVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            V+ R +D VLL R++   ++   W+  AG +E GE    A  RE  EE G+ +
Sbjct: 4   YVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRM-WSCIAGFIEPGESLEEAVRRETWEETGI 276
           V I+L ++R+  +V   R  R      W    G I+PGE+ E+A+ RE +EE G+
Sbjct: 11  VGIIL-LNRQG-QVFWGR--RIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGL 61

Length = 156

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 16/81 (19%)

Query: 220 VDPVVIMLVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           VD VV+       +  VLL  R++     +W+   GF+E  E+L +A  RE  EETG+++
Sbjct: 206 VDAVVVQ------SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKL 259

Query: 279 GEVVYHTSQPWPVGPNSMPCQ 299
                    P PV   S+  Q
Sbjct: 260 ---------PEPVLRGSIRDQ 271

Length = 340

>gnl|CDD|240045 cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 10/55 (18%)

Query: 228 VIDRENDRVLLSRQ----SRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            I R  ++VLL+R       F+P       G +EPGE+ E A+RRE  EE G+ V
Sbjct: 6   AIVRAGNKVLLARVIGQPHYFLP------GGHVEPGETAENALRRELQEELGVAV 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 227 LVIDRENDRVLLSRQSRFVPRM-WSCIAGFIEPGESLEEAVRRETWEETGIEV 278
             I R++ ++LL ++ R      W    G ++  E++E+AV RE  EETG+ +
Sbjct: 7   AAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSI 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 246 PRMWSCIAGFIEPGESLEEAVRRETWEETG 275
           P  W+   G +EPGE +EEA+RRE  EE G
Sbjct: 30  PGQWALSGGGVEPGERIEEALRREIREELG 59

Length = 141

>gnl|CDD|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVP--------RMWSCIAGFIEPGESLEE 264
           K+ +Y R +   I+L  + +   V+L RQ R           ++    AG ++  E  E 
Sbjct: 38  KREVYDRGNGATILLY-NAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEP-EV 95

Query: 265 AVRRETWEETGIEVGEV 281
            +R+E  EETG EVGEV
Sbjct: 96  CIRKEAIEETGYEVGEV 112

Length = 191

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 253 AGFIEPGESLEEAVRRETWEETGI--EVGEVVY 283
            G  EPGE+LE+A  RE  EE GI  E+G +++
Sbjct: 31  GGGQEPGETLEDAAHRECKEEIGIDVEIGPLLF 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 228 VIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           VI  E + VLL ++ +  P+  +W   +G +E GE  ++A  RE  EETG+ V  V +
Sbjct: 19  VILNERNDVLLVQE-KGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF 75

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 248 MWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            W    G IE GE+ E+A+ RE  EE GI V
Sbjct: 32  KWEFPGGKIEAGETPEQALIRELQEEVGITV 62

Length = 129

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQ-SRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
           PRV  VV +L    + + VLL R+ S      ++   G +E GES EE   RE  EETG+
Sbjct: 8   PRVAVVVFLL----KGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL 63

Query: 277 EVGEVVYHT 285
           E+ ++   T
Sbjct: 64  EIEKIELLT 72

Length = 144

>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 224 VIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           V+  +I+R + ++LL+++        +W    G +EPGES  +A+ RE  EE GIE    
Sbjct: 6   VVAAIIER-DGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG 64

Query: 282 VYHTSQPWPV 291
            Y  S    V
Sbjct: 65  EYVASHQREV 74

Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	100.0
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	100.0
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	100.0
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.78
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.74
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.68
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.68
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.67
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.66
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.66
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.66
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.65
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.65
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.65
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.64
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.64
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.64
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.64
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.63
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.63
PLN02325	144	nudix hydrolase	99.63
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.63
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.62
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.62
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.62
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.61
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.6
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.59
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.59
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.59
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.59
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.58
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.58
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.58
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.58
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.58
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.57
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.57
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.56
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.56
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.55
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.55
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.53
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.53
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.52
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.52
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.51
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.51
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.51
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.5
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.5
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.5
PRK10707	190	putative NUDIX hydrolase; Provisional	99.49
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.48
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.48
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.47
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.46
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.46
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.46
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.45
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.45
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.45
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.43
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.43
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.43
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.42
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.42
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.41
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.38
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.38
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.35
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.35
PLN02709	222	nudix hydrolase	99.33
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.32
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.32
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.27
PRK08999	312	hypothetical protein; Provisional	99.13
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.11
PF09296	98	NUDIX-like: NADH pyrophosphatase-like rudimentary	99.1
PLN02791	770	Nudix hydrolase homolog	98.97
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.97
PLN03143	291	nudix hydrolase; Provisional	98.93
PLN02552	247	isopentenyl-diphosphate delta-isomerase	98.91
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.85
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.76
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.76
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.73
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	98.64
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.21
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.18
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.15
PLN02839	372	nudix hydrolase	98.0
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	97.78
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	97.25
KOG4195	275	consensus Transient receptor potential-related cha	96.96
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	96.84
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.47
PRK00432	50	30S ribosomal protein S27ae; Validated	95.68
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	95.47
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	95.29
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	95.01
smart00661	52	RPOL9 RNA polymerase subunit 9.	94.55
COG4112	203	Predicted phosphoesterase (MutT family) [General f	94.05
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	92.32
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	92.23
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	91.63
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	89.3
PF13248	26	zf-ribbon_3: zinc-ribbon domain	88.69
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	88.13
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	87.16
PF12773	50	DZR: Double zinc ribbon	86.45
PRK13844	200	recombination protein RecR; Provisional	86.27
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	85.73
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	85.3
TIGR00615	195	recR recombination protein RecR. This family is ba	83.88
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	83.11
PRK00076	196	recR recombination protein RecR; Reviewed	82.36
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	82.05
COG0353	198	RecR Recombinational DNA repair protein (RecF path	81.77
PRK00420	112	hypothetical protein; Validated	81.65
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	81.58
COG1594	113	RPB9 DNA-directed RNA polymerase, subunit M/Transc	81.11

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=100.00  E-value=9.7e-51  Score=377.59  Aligned_cols=221  Identities=40%  Similarity=0.695  Sum_probs=187.3

Q ss_pred             CeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 020612           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (323)
Q Consensus        64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~~~  143 (323)
                      .+++++|+++++++..++.   |      ++  ....      ..+......++|..  ++.++|++.+......     
T Consensus        19 ~~~~~~~~~~~l~l~~~~~---p------~~--~~~~------~~l~~~~~~~~~~~--~~~~v~~~~l~~~~~~-----   74 (279)
T COG2816          19 STLWLVFSEGKLLLKDGEL---P------FG--AAEN------LDLVGEALLGIGEW--GGEPVFAVWLVEEIEL-----   74 (279)
T ss_pred             cceEEEEcCCcEEEecCCC---c------cc--hhhc------CCchHHHhhhcccc--CCccceeeeccccccc-----
Confidence            7999999999999965432   1      11  1111      01123445677764  6778887755443321     


Q ss_pred             ccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV  223 (323)
Q Consensus       144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv  223 (323)
                      +.+..+++||+++..+      +...+.++++|.+|++|+++||||++||++|...++|++++|+  .|+..+|||++|+
T Consensus        75 ~~~~~~~~lR~l~~~~------~~~~~~~~~~a~~l~~w~~~~RFCg~CG~~~~~~~~g~~~~C~--~cg~~~fPR~dP~  146 (279)
T COG2816          75 PEPFELVDLRSLLTEL------DEGLFGLAARAVQLLEWYRSHRFCGRCGTKTYPREGGWARVCP--KCGHEHFPRIDPC  146 (279)
T ss_pred             CCccceeeHHHHhccC------CHHHHHHHHHHHHHHHHHhhCcCCCCCCCcCccccCceeeeCC--CCCCccCCCCCCe
Confidence            3477899999998654      3467899999999999999999999999999999999999998  6999999999999


Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      |||+|++  ++++||.++.++++|+|++.+||||+|||+|+|++|||+||+||+|++++|++||||||     |+++|+|
T Consensus       147 vIv~v~~--~~~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPf-----P~SLMig  219 (279)
T COG2816         147 VIVAVIR--GDEILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPF-----PHSLMLG  219 (279)
T ss_pred             EEEEEec--CCceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCC-----chhhhhh
Confidence            9999998  46699999998889999999999999999999999999999999999999999999995     9999999


Q ss_pred             EEEEeeccCCCCCcccccCC
Q 020612          304 FYAYAKSFEINVDKEELEGT  323 (323)
Q Consensus       304 f~a~~~~~~i~~d~~EiedA  323 (323)
                      |++.+.+++|++|+.||+||
T Consensus       220 f~aey~sgeI~~d~~Eleda  239 (279)
T COG2816         220 FMAEYDSGEITPDEGELEDA  239 (279)
T ss_pred             heeeeccccccCCcchhhhc
Confidence            99999999999999999986

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=100.00  E-value=3.1e-41  Score=315.07  Aligned_cols=216  Identities=30%  Similarity=0.503  Sum_probs=179.3

Q ss_pred             CeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 020612           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (323)
Q Consensus        64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~~~  143 (323)
                      ...+++|.+++.++... .       +...+.+..         .......+|||..  ++.++|+++++..        
T Consensus        12 ~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~---------~~~~~~~~~lg~~--~~~~~~~~~~~~~--------   64 (256)
T PRK00241         12 AGWWVVSHEQQLWLPDG-E-------LPFGAAANL---------DLPGLRALQIGEW--QGEPVWLVRQDPL--------   64 (256)
T ss_pred             CcEEEEEeCCeEEEccC-C-------CCCcccccc---------CCCccceEEEEee--CCEEEEEEEcCcc--------
Confidence            46688898988887431 1       111221111         0123567999986  6789999987632        


Q ss_pred             ccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV  223 (323)
Q Consensus       144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv  223 (323)
                       .+..|.+||++ ..+      ++.+++++++|++|++||++|+|||+||+++....+++++.|+  .|+..+||+++|+
T Consensus        65 -~~~~~~~lr~~-~~~------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~c~~~~yp~~~pa  134 (256)
T PRK00241         65 -RGHEMGSLRQL-LDL------DDGLFQLLGRAVQLAEFYRSHRFCGYCGHPMHPSKTEWAMLCP--HCRERYYPRIAPC  134 (256)
T ss_pred             -ccccchhhhhh-ccC------CHHHHHHHHHHHHHHHHhhcCccccccCCCCeecCCceeEECC--CCCCEECCCCCCE
Confidence             25678999998 333      3467899999999999999999999999999999999999998  7999999999999


Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      |+++|.+  +++|||+|+.+++.|.|++|||+||+|||+++||+||++|||||++..++|+++++|++     ++++|++
T Consensus       135 Viv~V~~--~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~-----p~~lm~~  207 (256)
T PRK00241        135 IIVAVRR--GDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPF-----PHSLMLG  207 (256)
T ss_pred             EEEEEEe--CCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecC-----CCeEEEE
Confidence            9998876  58999999988778999999999999999999999999999999999999999999985     6789999


Q ss_pred             EEEEeeccCCCCCcccccCC
Q 020612          304 FYAYAKSFEINVDKEELEGT  323 (323)
Q Consensus       304 f~a~~~~~~i~~d~~EiedA  323 (323)
                      |.+.+..+++.++++|+.++
T Consensus       208 f~a~~~~~~~~~~~~Ei~~a  227 (256)
T PRK00241        208 FHADYDSGEIVFDPKEIADA  227 (256)
T ss_pred             EEEEecCCcccCCcccEEEE
Confidence            99998877888888888653

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=100.00  E-value=2.9e-41  Score=315.39  Aligned_cols=167  Identities=54%  Similarity=0.961  Sum_probs=153.1

Q ss_pred             chhhhHHHhhhcchhhhhhhhHH-HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCC--CcccCCcccEE
Q 020612          148 CFVELRTVMVATDWADQRAMADL-AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK--KRIYPRVDPVV  224 (323)
Q Consensus       148 ~~~~lr~~~~~~~~~~~~~~~~~-~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~--~~~ypr~~pvV  224 (323)
                      .|+++|..+. +...    ..++ +++++|++++.||++++|||.||++|.+.++|.+.+|.+..|.  .+.|||++|+|
T Consensus       116 ~F~~~r~~~~-~~~~----~~d~~~~~a~ars~l~W~skykFCp~CG~~tkp~e~g~k~~Cs~~~C~~~n~~yPr~dPvV  190 (345)
T KOG3084|consen  116 SFVPLRMSMS-LPGS----DEDARSLTAVARSLLDWVSKYKFCPGCGSPTKPEEAGTKLQCSDETCPSCNVIYPRTDPVV  190 (345)
T ss_pred             eeccchhhcc-CCCC----hhhhhcHHHHHHHHHHHHHHhccCcccCCCcccccCCccceeecccCCcCCeeccCCCCeE
Confidence            8999999984 2111    1233 8999999999999999999999999999999999999988898  89999999999


Q ss_pred             EEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEE
Q 020612          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF  304 (323)
Q Consensus       225 ivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f  304 (323)
                      |++|+++++.++||.|++++++|+|++++||+|+|||+||||+||++|||||+|+.+.|+.+||||.    +|+++|+||
T Consensus       191 Im~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~----~p~SLMIgc  266 (345)
T KOG3084|consen  191 IMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPL----MPQSLMIGC  266 (345)
T ss_pred             EEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCC----CchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999995    588999999


Q ss_pred             EEEeec-cCCCCCcc-cccCC
Q 020612          305 YAYAKS-FEINVDKE-ELEGT  323 (323)
Q Consensus       305 ~a~~~~-~~i~~d~~-EiedA  323 (323)
                      ++.+.. +.|.+|.+ |++||
T Consensus       267 ~ala~~~~~I~vd~dlEleDa  287 (345)
T KOG3084|consen  267 LALAKLNGKISVDKDLELEDA  287 (345)
T ss_pred             HHHHhhCCccccCcchhhhhc
Confidence            997775 88999988 99986

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.1e-18  Score=144.36  Aligned_cols=101  Identities=27%  Similarity=0.360  Sum_probs=82.6

Q ss_pred             ccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 020612          207 CSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT  285 (323)
Q Consensus       207 C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g  285 (323)
                      |+  .|+.++|++...++.++|++  +++|||+||.. ...|.|++|||+||+||++++|++||++||||+++....+++
T Consensus         1 c~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~   76 (130)
T cd04511           1 CP--DCGYIHYQNPKIIVGCVPEW--EGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYA   76 (130)
T ss_pred             CC--CCccccCCCCcEEEEEEEec--CCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEE
Confidence            65  89999999888777777776  48999999875 346899999999999999999999999999999997777777


Q ss_pred             EeecCCCCCCCCeeEEEEEEEEeeccCCCCC
Q 020612          286 SQPWPVGPNSMPCQLMVGFYAYAKSFEINVD  316 (323)
Q Consensus       286 s~~~~~~~~~~~~~lmi~f~a~~~~~~i~~d  316 (323)
                      .+.++.     .+.+++.|.+....+.+..+
T Consensus        77 ~~~~~~-----~~~~~~~f~~~~~~~~~~~~  102 (130)
T cd04511          77 VYSVPH-----ISQVYMFYRARLLDLDFAPG  102 (130)
T ss_pred             EEecCC-----ceEEEEEEEEEEcCCcccCC
Confidence            776552     45688889998876555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.74  E-value=1e-17  Score=140.97  Aligned_cols=95  Identities=63%  Similarity=0.975  Sum_probs=79.8

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm  301 (323)
                      |+|++++++. ++++||+||++++.|.|++|||+++.|||+++||+||++||||+++..+.++++.+|.+     +..++
T Consensus         1 ~~v~i~l~~~-~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~   74 (131)
T cd03429           1 PAVIVLVIDG-GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF-----PSSLM   74 (131)
T ss_pred             CeEEEEEEeC-CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC-----CceEE
Confidence            5777888775 48999999987668999999999999999999999999999999999999998877654     35677


Q ss_pred             EEEEEEeeccCCCCCcccccC
Q 020612          302 VGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       302 i~f~a~~~~~~i~~d~~Eied  322 (323)
                      ++|++....+++..+++|+.+
T Consensus        75 ~~f~~~~~~~~~~~~~~E~~~   95 (131)
T cd03429          75 LGFTAEADSGEIVVDDDELED   95 (131)
T ss_pred             EEEEEEEcCCcccCCchhhhc
Confidence            888888776666667677654

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.68  E-value=3.8e-16  Score=134.40  Aligned_cols=97  Identities=31%  Similarity=0.345  Sum_probs=75.8

Q ss_pred             CcccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (323)
Q Consensus       214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~  292 (323)
                      ...|+.+..+|.+++..  +++|||+||.. +..|.|++|||+||.|||+++||+||++|||||++..+++++.+..+..
T Consensus         3 ~~~~~~p~~~v~~~i~~--~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~r   80 (145)
T COG1051           3 AMGYRTPLVAVGALIVR--NGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGR   80 (145)
T ss_pred             cccCCCcceeeeEEEEe--CCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCC
Confidence            45677777777777776  45999999986 4578999999999999999999999999999999999999998877754


Q ss_pred             CCCCCeeEEEEEEEEeeccCC
Q 020612          293 PNSMPCQLMVGFYAYAKSFEI  313 (323)
Q Consensus       293 ~~~~~~~lmi~f~a~~~~~~i  313 (323)
                      ... .+++.+.|++....+++
T Consensus        81 d~r-~~~v~~~~~~~~~~g~~  100 (145)
T COG1051          81 DPR-GHHVSFLFFAAEPEGEL  100 (145)
T ss_pred             CCc-eeEEEEEEEEEecCCCc
Confidence            322 34566666665544433

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=4.7e-16  Score=128.74  Aligned_cols=99  Identities=19%  Similarity=0.169  Sum_probs=74.3

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +.+.++|++. +++|||++|.+ ..+|.|.+|||++|+|||+++||+||++||||+++....+++...+.+.... .+.+
T Consensus         3 ~~~~~~i~~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~   80 (125)
T cd04679           3 VGCGAAILRD-DGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPP-QHWV   80 (125)
T ss_pred             eEEEEEEECC-CCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCC-CeEE
Confidence            4566677775 48999999875 3468999999999999999999999999999999988888887665443222 3567


Q ss_pred             EEEEEEEeeccCCC-CCcccccC
Q 020612          301 MVGFYAYAKSFEIN-VDKEELEG  322 (323)
Q Consensus       301 mi~f~a~~~~~~i~-~d~~Eied  322 (323)
                      ++.|.+....+... .+++|+.+
T Consensus        81 ~~~f~~~~~~~~~~~~~~~E~~~  103 (125)
T cd04679          81 APVYLAENFSGEPRLMEPDKLLE  103 (125)
T ss_pred             EEEEEEeecCCccccCCCccccE
Confidence            77788776655433 34456544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.67  E-value=4.9e-16  Score=127.88  Aligned_cols=88  Identities=27%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             EEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC---Ce
Q 020612          223 VVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM---PC  298 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~---~~  298 (323)
                      ++.++|++  +++|||+|+.+. .+|.|.+|||+||+|||+++|++||++||||+++..+.+++...+.+.....   .+
T Consensus         2 ~~~~ii~~--~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04684           2 GAYAVIPR--DGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH   79 (128)
T ss_pred             eeEEEEEe--CCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence            56677776  389999999863 4689999999999999999999999999999999888888876554322211   24


Q ss_pred             eEEEEEEEEeeccC
Q 020612          299 QLMVGFYAYAKSFE  312 (323)
Q Consensus       299 ~lmi~f~a~~~~~~  312 (323)
                      .+.+.|.+....+.
T Consensus        80 ~~~~~f~~~~~~~~   93 (128)
T cd04684          80 HLCVFYDARVVGGA   93 (128)
T ss_pred             EEEEEEEEEEecCc
Confidence            56677777776554

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.66  E-value=6.8e-16  Score=132.15  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=71.5

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCC-----CC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVG-----PN  294 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs~~~~~~-----~~  294 (323)
                      +|.++|++. +++|||+||.+ +.+|+|.+|||+||+|||+++|++||++||||+++...  ++++.....+.     ..
T Consensus        14 ~v~~vI~~~-~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~   92 (144)
T cd03430          14 SIDLIVENE-DGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD   92 (144)
T ss_pred             EEEEEEEeC-CCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCC
Confidence            566666764 58999999875 45789999999999999999999999999999988655  67666432211     11


Q ss_pred             CCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          295 SMPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       295 ~~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ...+.+.+.|.+....+.+...++|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~  120 (144)
T cd03430          93 FSTHYVVLGYVLKLSSNELLLPDEQHSE  120 (144)
T ss_pred             CccEEEEEEEEEEEcCCcccCCchhccE
Confidence            1124567777777666655555556543

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=1e-15  Score=125.50  Aligned_cols=95  Identities=23%  Similarity=0.337  Sum_probs=68.8

Q ss_pred             EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCCCe
Q 020612          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~~~~~~  298 (323)
                      +|.++|++  +++|||+||.+  ..+|.|++|||+|++|||+++|++||++||||+++.  .+.+++.+.+....  ..+
T Consensus         2 ~v~~vi~~--~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~--~~~   77 (120)
T cd04683           2 AVYVLLRR--DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTED--IES   77 (120)
T ss_pred             cEEEEEEE--CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCC--Cce
Confidence            45666665  48999999875  347899999999999999999999999999999986  67788776544322  134


Q ss_pred             eEEEEEEEEeeccCCC-CCccccc
Q 020612          299 QLMVGFYAYAKSFEIN-VDKEELE  321 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~-~d~~Eie  321 (323)
                      .+++.|.+....+... .+++|+.
T Consensus        78 ~~~~~f~~~~~~~~~~~~~~~e~~  101 (120)
T cd04683          78 RIGLFFTVRRWSGEPRNCEPDKCA  101 (120)
T ss_pred             EEEEEEEEEeecCccccCCCCcEe
Confidence            5666666665444433 3445544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=8e-16  Score=127.84  Aligned_cols=99  Identities=29%  Similarity=0.374  Sum_probs=72.6

Q ss_pred             EEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-eeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~-~~l  300 (323)
                      +|.++|++. ++++||++|... .+|.|.+|||+++.|||+++||.||++||||+++..++++++.++.+...+.. ..+
T Consensus         3 av~~~i~~~-~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           3 AVGVLILNE-DGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             eEEEEEEcC-CCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence            566777775 479999998753 46899999999999999999999999999999999899888766543222222 234


Q ss_pred             EEEEEEEeeccCCCCCcccccC
Q 020612          301 MVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       301 mi~f~a~~~~~~i~~d~~Eied  322 (323)
                      .+.|.+.........+.+|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~e~~~  103 (130)
T cd04681          82 DLFFVCQVDDKPIVKAPDDVAE  103 (130)
T ss_pred             EEEEEEEeCCCCCcCChHHhhe
Confidence            4456666655445555556543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.65  E-value=1.5e-15  Score=129.57  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             CcccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (323)
Q Consensus       214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~  292 (323)
                      +-+||++.+++.++|++. ++++||+++.. ..++.|++|||+|++|||+++||+||++||||+++..+++++.+.+.+.
T Consensus         6 ~~~~~~~~~av~~vv~~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   84 (142)
T cd04700           6 RHHVEVEARAAGAVILNE-RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFD   84 (142)
T ss_pred             ccCcceeeeeEEEEEEeC-CCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcC
Confidence            468999999999999985 47899988764 3468999999999999999999999999999999988888887655432


Q ss_pred             CCCCCeeEEEEEEEEeeccCCCC-CcccccC
Q 020612          293 PNSMPCQLMVGFYAYAKSFEINV-DKEELEG  322 (323)
Q Consensus       293 ~~~~~~~lmi~f~a~~~~~~i~~-d~~Eied  322 (323)
                      . + ...+.+.|++........+ ..+|+.+
T Consensus        85 ~-~-~~~~~~~f~~~~~~~~~~~~~~~E~~~  113 (142)
T cd04700          85 D-G-VLVLRHVWLAEPEGQTLAPKFTDEIAE  113 (142)
T ss_pred             C-C-cEEEEEEEEEEecCCccccCCCCCEEE
Confidence            1 1 2234456777664433222 2345543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2e-15  Score=124.33  Aligned_cols=86  Identities=34%  Similarity=0.351  Sum_probs=65.1

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~  299 (323)
                      +|+++|++  +++|||+||.+   +.+|.|++|||+||+|||+++|++||++||||+++..+.+++.+.++..    ...
T Consensus         2 ~v~~vi~~--~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~----~~~   75 (117)
T cd04691           2 GVVGVLFS--DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS----ELQ   75 (117)
T ss_pred             eEEEEEEE--CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC----CeE
Confidence            34555555  38999999875   2578999999999999999999999999999999888888888765532    234


Q ss_pred             EEEEEEEEeeccCCC
Q 020612          300 LMVGFYAYAKSFEIN  314 (323)
Q Consensus       300 lmi~f~a~~~~~~i~  314 (323)
                      .+..|.+....+.+.
T Consensus        76 ~~~~~~~~~~~~~~~   90 (117)
T cd04691          76 LLHYYVVTFWQGEIP   90 (117)
T ss_pred             EEEEEEEEEecCCCC
Confidence            455566655555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=1.6e-15  Score=128.40  Aligned_cols=98  Identities=28%  Similarity=0.324  Sum_probs=68.2

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE-----EeecCCCCCC--
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT-----SQPWPVGPNS--  295 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g-----s~~~~~~~~~--  295 (323)
                      .+.++|++.++++|||+||.+  .|.|.+|||+||+|||+++||+||++||||+++..+...+     .+...+....  
T Consensus         4 ~~~~~v~~~~~~~vLLv~r~~--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (138)
T cd03674           4 TASAFVVNPDRGKVLLTHHRK--LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG   81 (138)
T ss_pred             EEEEEEEeCCCCeEEEEEEcC--CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence            455666775448999999876  5899999999999999999999999999999887666543     1222121111  


Q ss_pred             --CCeeEEEEEEEEeeccCCCC-CcccccC
Q 020612          296 --MPCQLMVGFYAYAKSFEINV-DKEELEG  322 (323)
Q Consensus       296 --~~~~lmi~f~a~~~~~~i~~-d~~Eied  322 (323)
                        ...++++.|++....+...+ +.+|+.+
T Consensus        82 ~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~  111 (138)
T cd03674          82 VPGHLHLDLRFLAVAPADDVAPPKSDESDA  111 (138)
T ss_pred             CCCcEEEEEEEEEEccCccccCCCCCcccc
Confidence              12345567888766555543 5566654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1.1e-15  Score=124.87  Aligned_cols=94  Identities=27%  Similarity=0.292  Sum_probs=72.0

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec-cEEEEEEeecCCCCCCCCeeEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-EVVYHTSQPWPVGPNSMPCQLM  301 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~-~v~~~gs~~~~~~~~~~~~~lm  301 (323)
                      ++.++|++. ++++||+||..  .+.|.+|||++++|||+++||+||++||||+.+. ...+++.+.+.+..   ....+
T Consensus         2 ~~~~~i~~~-~~~vLL~~r~~--~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~---~~~~~   75 (120)
T cd04680           2 GARAVVTDA-DGRVLLVRHTY--GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASG---SWDHV   75 (120)
T ss_pred             ceEEEEECC-CCeEEEEEECC--CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCC---CceEE
Confidence            466777775 47999999875  3489999999999999999999999999999998 88888877655422   23566


Q ss_pred             EEEEEEeeccCCCCCcccccC
Q 020612          302 VGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       302 i~f~a~~~~~~i~~d~~Eied  322 (323)
                      +.|.+.........+.+|+.+
T Consensus        76 ~~f~~~~~~~~~~~~~~E~~~   96 (120)
T cd04680          76 IVFRARADTQPVIRPSHEISE   96 (120)
T ss_pred             EEEEecccCCCccCCcccEEE
Confidence            778877665554455566543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.64  E-value=2e-15  Score=126.22  Aligned_cols=95  Identities=28%  Similarity=0.277  Sum_probs=69.1

Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      |.++|.+  ++++||+||.+..++.|.+|||+|++|||+++||+||++||||+++....+++.+.+...... ...+++.
T Consensus         3 v~~ii~~--~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (134)
T cd03675           3 VAAVVER--DGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSD-TTYLRFA   79 (134)
T ss_pred             EEEEEEE--CCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCC-eeEEEEE
Confidence            3444444  589999999876678999999999999999999999999999999988888777665443212 2345567


Q ss_pred             EEEEeeccCCC-CCccccc
Q 020612          304 FYAYAKSFEIN-VDKEELE  321 (323)
Q Consensus       304 f~a~~~~~~i~-~d~~Eie  321 (323)
                      |.+.+...... ..++|+.
T Consensus        80 f~~~~~~~~~~~~~~~e~~   98 (134)
T cd03675          80 FAAELLEHLPDQPLDSGIV   98 (134)
T ss_pred             EEEEECCCCCCCCCCCCce
Confidence            77776654332 2234544

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.2e-15  Score=124.80  Aligned_cols=93  Identities=27%  Similarity=0.436  Sum_probs=68.6

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC--CCCCee
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP--NSMPCQ  299 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~--~~~~~~  299 (323)
                      ++|.++|++. +++|||+|+.+ .+|.|++|||++++|||+++||+||++||||+++..+.+++...+.+..  ....+.
T Consensus         3 ~~v~~~i~~~-~~~iLL~r~~~-~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04696           3 VTVGALIYAP-DGRILLVRTTK-WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHF   80 (125)
T ss_pred             cEEEEEEECC-CCCEEEEEccC-CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEE
Confidence            4566777775 57999998764 4689999999999999999999999999999998877776653332211  122456


Q ss_pred             EEEEEEEEeeccCCCCC
Q 020612          300 LMVGFYAYAKSFEINVD  316 (323)
Q Consensus       300 lmi~f~a~~~~~~i~~d  316 (323)
                      +++.|++......+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~   97 (125)
T cd04696          81 VLFDFFARTDGTEVTPN   97 (125)
T ss_pred             EEEEEEEEecCCcccCC
Confidence            67778877655555544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.4e-15  Score=125.47  Aligned_cols=85  Identities=26%  Similarity=0.407  Sum_probs=67.2

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm  301 (323)
                      ++.+++++. +++|||+|+.+ ..++.|++|||+||.|||+++|++||++||||+++...++++.....      .+.++
T Consensus         2 ~~~~vv~~~-~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~------~~~~~   74 (123)
T cd04671           2 IVAAVILNN-QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG------GSWFR   74 (123)
T ss_pred             EEEEEEEcC-CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC------CeEEE
Confidence            455666664 58999999875 34789999999999999999999999999999999888877765332      34677


Q ss_pred             EEEEEEeeccCCC
Q 020612          302 VGFYAYAKSFEIN  314 (323)
Q Consensus       302 i~f~a~~~~~~i~  314 (323)
                      +.|.+...++.+.
T Consensus        75 ~~f~a~~~~g~~~   87 (123)
T cd04671          75 FVFTGNITGGDLK   87 (123)
T ss_pred             EEEEEEEeCCeEc
Confidence            8888877665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=2.4e-15  Score=122.93  Aligned_cols=95  Identities=27%  Similarity=0.251  Sum_probs=69.0

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC---CCCe
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN---SMPC  298 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~---~~~~  298 (323)
                      +++++|++  +++|||+||.+ ..++.|.+|||++++|||+++||+||++||||+++....+++...+.+...   ...+
T Consensus         2 ~v~~ii~~--~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04673           2 AVGAVVFR--GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFH   79 (122)
T ss_pred             cEEEEEEE--CCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceE
Confidence            45566666  47999999875 346899999999999999999999999999999988777777655433211   1134


Q ss_pred             eEEEEEEEEeeccCCCCCcccc
Q 020612          299 QLMVGFYAYAKSFEINVDKEEL  320 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~~d~~Ei  320 (323)
                      .+++.|.+....+++. +.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~E~  100 (122)
T cd04673          80 YVLIDFLCRYLGGEPV-AGDDA  100 (122)
T ss_pred             EEEEEEEEEeCCCccc-CCccc
Confidence            5666777776655543 33454

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.63  E-value=2.4e-15  Score=131.38  Aligned_cols=99  Identities=16%  Similarity=0.229  Sum_probs=70.7

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCC--C--C
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGP--N--S  295 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~--~--~  295 (323)
                      +|.++|++. .++|||+||.. ..+|.|++|||+||+|||+++|++||++|||||++.  ..++++...+.+..  +  .
T Consensus        19 ~v~~vI~~~-~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   97 (159)
T PRK15434         19 SLDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTD   97 (159)
T ss_pred             EEEEEEECC-CCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCCc
Confidence            555666653 58999999874 446899999999999999999999999999999863  34555543222211  1  1


Q ss_pred             -CCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          296 -MPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       296 -~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                       ..+.+++.|.+....+++.++++|..+
T Consensus        98 ~~~~~i~~~f~~~~~~g~~~~~~~E~~~  125 (159)
T PRK15434         98 FTTHYVVLGFRLRVAEEDLLLPDEQHDD  125 (159)
T ss_pred             cceEEEEEEEEEEecCCcccCChHHeeE
Confidence             124677778887777777766656543

>PLN02325 nudix hydrolase

Probab=99.63  E-value=3.9e-15  Score=127.63  Aligned_cols=94  Identities=24%  Similarity=0.266  Sum_probs=70.7

Q ss_pred             cccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      ..||+...++.++|++  +++|||+||.. ...|.|.+|||+||.|||+++||+||++||||+++...++++.....+..
T Consensus         3 ~~~~~p~~~v~~vi~~--~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~   80 (144)
T PLN02325          3 TGEPIPRVAVVVFLLK--GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLE   80 (144)
T ss_pred             CCCCCCeEEEEEEEEc--CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeec
Confidence            3467777777777776  47999999875 34679999999999999999999999999999999988888876544322


Q ss_pred             CCC-CeeEEEEEEEEeec
Q 020612          294 NSM-PCQLMVGFYAYAKS  310 (323)
Q Consensus       294 ~~~-~~~lmi~f~a~~~~  310 (323)
                      ... .+.+.+.|.+....
T Consensus        81 ~~~~~~~i~~~f~~~~~~   98 (144)
T PLN02325         81 EPKPSHYVTVFMRAVLAD   98 (144)
T ss_pred             CCCCcEEEEEEEEEEECC
Confidence            211 23455556665543

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=2.7e-15  Score=124.68  Aligned_cols=67  Identities=36%  Similarity=0.480  Sum_probs=57.1

Q ss_pred             CCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612          218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ  287 (323)
Q Consensus       218 pr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~  287 (323)
                      |.+.+++.+++++. ++++||++|..  .+.|++|||+|++|||+++||+||++||||+++....+++.+
T Consensus         4 ~~~~~~~~~~v~~~-~~~vLL~~r~~--~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~   70 (132)
T cd04677           4 PLILVGAGVILLNE-QGEVLLQKRSD--TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVY   70 (132)
T ss_pred             cccccceEEEEEeC-CCCEEEEEecC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEe
Confidence            44567788888875 47999998875  378999999999999999999999999999999887777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.62  E-value=2.5e-15  Score=130.29  Aligned_cols=98  Identities=21%  Similarity=0.306  Sum_probs=73.5

Q ss_pred             cEEEEEEEeCC-CCeEEEEeeccC---CCCcccceeeecCCC-CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612          222 PVVIMLVIDRE-NDRVLLSRQSRF---VPRMWSCIAGFIEPG-ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       222 pvVivlV~~~~-~~riLL~rr~~~---~~g~w~lPgG~VE~G-Es~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~  296 (323)
                      .+|++++++.+ +++|||+||...   .+|.|++|||+||+| ||+++||+||++||||+++..+.+++.........  
T Consensus         3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~--   80 (157)
T cd03426           3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS--   80 (157)
T ss_pred             eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC--
Confidence            46677777654 369999999853   578999999999999 99999999999999999999899888765433222  


Q ss_pred             CeeEEEEEEEEeec-cCCCCCcccccC
Q 020612          297 PCQLMVGFYAYAKS-FEINVDKEELEG  322 (323)
Q Consensus       297 ~~~lmi~f~a~~~~-~~i~~d~~Eied  322 (323)
                       ...+..|++.... ..+.++++|+.+
T Consensus        81 -~~~v~~~~~~~~~~~~~~~~~~E~~~  106 (157)
T cd03426          81 -GFVVTPVVGLVPPPLPLVLNPDEVAE  106 (157)
T ss_pred             -CCEEEEEEEEECCCCCCCCCHHHhhe
Confidence             2344555665544 356677777764

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.62  E-value=2.9e-15  Score=123.78  Aligned_cols=97  Identities=26%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             EEEEEEEeCC--CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC-CCCee
Q 020612          223 VVIMLVIDRE--NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN-SMPCQ  299 (323)
Q Consensus       223 vVivlV~~~~--~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~-~~~~~  299 (323)
                      ++.++|++.+  +++|||+|+.+  .+.|.+|||++++|||+++||+||++||||+++..+.+++.+.|++... .....
T Consensus         3 ~a~~ii~~~~~~~~~vLl~~~~~--~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T cd03673           3 AAGGVVFRGSDGGIEVLLIHRPR--GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHK   80 (131)
T ss_pred             eEEEEEEEccCCCeEEEEEEcCC--CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcce
Confidence            3445555542  27999999976  3799999999999999999999999999999998888888776655321 12334


Q ss_pred             EEEEEEEEeeccCCCC-Cccccc
Q 020612          300 LMVGFYAYAKSFEINV-DKEELE  321 (323)
Q Consensus       300 lmi~f~a~~~~~~i~~-d~~Eie  321 (323)
                      .+..|.+.....++.. +++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~E~~  103 (131)
T cd03673          81 TVHWWLMRALGGEFTPQPDEEVD  103 (131)
T ss_pred             EEEEEEEEEcCCCcccCCCCcEE
Confidence            5556666665555554 455554

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=4.9e-15  Score=123.09  Aligned_cols=98  Identities=26%  Similarity=0.296  Sum_probs=72.2

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      .++.++|++. +++|||+||.. +..+.|.+|||+|++|||+++|++||++||||+++..+++++.....+... ..+.+
T Consensus         3 ~~v~~ii~~~-~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~-~~~~~   80 (129)
T cd04678           3 VGVGVFVLNP-KGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEE-GKHYV   80 (129)
T ss_pred             eEEEEEEECC-CCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCC-CcEEE
Confidence            3566777775 48999999875 357899999999999999999999999999999998888887654433222 24567


Q ss_pred             EEEEEEEeeccCCCC---Cccccc
Q 020612          301 MVGFYAYAKSFEINV---DKEELE  321 (323)
Q Consensus       301 mi~f~a~~~~~~i~~---d~~Eie  321 (323)
                      .+.|.+.........   +.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~e~~  104 (129)
T cd04678          81 TIFVKAEVDDGEAEPNKMEPEKCE  104 (129)
T ss_pred             EEEEEEEeCCCCcccCCCCCceeC
Confidence            777777766544332   344544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=5.6e-15  Score=122.58  Aligned_cols=67  Identities=28%  Similarity=0.403  Sum_probs=55.8

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW  289 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~  289 (323)
                      +.+.++|++. +++|||+|++...++.|.+|||++++|||+++||+||++||||+++....+++...+
T Consensus         3 ~~~~~~v~~~-~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~   69 (127)
T cd04670           3 VGVGGLVLNE-KNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHA   69 (127)
T ss_pred             eEEEEEEEcC-CCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEec
Confidence            4567777775 489999987654578999999999999999999999999999999877777665433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.60  E-value=5.8e-15  Score=123.90  Aligned_cols=97  Identities=34%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~  299 (323)
                      .+|.++++++ ++++||+++.+.  .++.|++|||+||.||++++||+||++||||+++..+.+++.+.+..+   ....
T Consensus         3 ~~v~v~~~~~-~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~---~~~~   78 (137)
T cd03424           3 DAVAVLPYDD-DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPG---FSDE   78 (137)
T ss_pred             CEEEEEEEcC-CCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCc---ccCc
Confidence            4667777776 489999988653  356899999999999999999999999999999988888887654321   2334


Q ss_pred             EEEEEEEEeeccC--CCCCcccccC
Q 020612          300 LMVGFYAYAKSFE--INVDKEELEG  322 (323)
Q Consensus       300 lmi~f~a~~~~~~--i~~d~~Eied  322 (323)
                      .+..|++......  ...++.|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~E~~~  103 (137)
T cd03424          79 RIHLFLAEDLSPGEEGLLDEGEDIE  103 (137)
T ss_pred             cEEEEEEEcccccccCCCCCCCeeE
Confidence            5667777665443  3455666653

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1e-14  Score=120.75  Aligned_cols=83  Identities=25%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      +.++|++. +++|||+||.+...+.|++|||+||+|||+++|++||++||||+++.....++.+.++       ....+.
T Consensus         3 ~~~ii~~~-~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~-------~~~~~~   74 (121)
T cd04669           3 ASIVIIND-QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQN-------GRTEHY   74 (121)
T ss_pred             eEEEEEeC-CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeC-------CcEEEE
Confidence            44555663 4899999987655679999999999999999999999999999999776777766542       134566


Q ss_pred             EEEEeeccCCC
Q 020612          304 FYAYAKSFEIN  314 (323)
Q Consensus       304 f~a~~~~~~i~  314 (323)
                      |.+....+.+.
T Consensus        75 f~~~~~~g~~~   85 (121)
T cd04669          75 FLARVISGKLG   85 (121)
T ss_pred             EEEEEECCeec
Confidence            77766655544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.59  E-value=1e-14  Score=122.24  Aligned_cols=89  Identities=26%  Similarity=0.263  Sum_probs=68.5

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm  301 (323)
                      +..++|.+  +++|||++|.+ ..++.|.+|||+||+|||+++||+||++||||+++..+++++...+..... ....++
T Consensus         3 ~~~~~i~~--~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~   79 (137)
T cd03427           3 TTLCFIKD--PDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGE-EERYGV   79 (137)
T ss_pred             EEEEEEEE--CCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCC-CcEEEE
Confidence            45666666  48999998875 357899999999999999999999999999999999888888877654322 134566


Q ss_pred             EEEEEEeeccCCC
Q 020612          302 VGFYAYAKSFEIN  314 (323)
Q Consensus       302 i~f~a~~~~~~i~  314 (323)
                      +.|.+....+.+.
T Consensus        80 ~~f~~~~~~~~~~   92 (137)
T cd03427          80 FVFLATEFEGEPL   92 (137)
T ss_pred             EEEEECCcccccC
Confidence            6677655544443

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=6.9e-15  Score=121.49  Aligned_cols=95  Identities=26%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             EEEEEEEeCCCCeEEEEeeccC----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          223 VVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      ++++++++  +++|||+||.+.    .+|.|.+|||+|+.|||+++||+||++||||+++..........+.+.   ...
T Consensus         3 v~~~~~~~--~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~---~~~   77 (122)
T cd04682           3 VALALLIG--DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA---SPP   77 (122)
T ss_pred             eEEEEEEc--CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC---CCC
Confidence            34455554  389999999743    478999999999999999999999999999999853332222222221   133


Q ss_pred             eEEEEEEEEeeccC-CCCCcccccC
Q 020612          299 QLMVGFYAYAKSFE-INVDKEELEG  322 (323)
Q Consensus       299 ~lmi~f~a~~~~~~-i~~d~~Eied  322 (323)
                      ..++.|.+...... ...+.+|+++
T Consensus        78 ~~~~~f~~~~~~~~~~~~~~~E~~~  102 (122)
T cd04682          78 GTEHVFVVPLTAREDAILFGDEGQA  102 (122)
T ss_pred             ceEEEEEEEEecCCCccccCchhhe
Confidence            46666777666443 4456666654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=1.6e-14  Score=119.55  Aligned_cols=94  Identities=21%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC--CCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN--SMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~--~~~~~l  300 (323)
                      .|.++|++  +++|||+++++  .+.|.+|||+|++|||+++||+||++||||+.+....+++.........  ...+.+
T Consensus         4 ~v~~~i~~--~~~vLL~~~~~--~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T cd04672           4 DVRAAIFK--DGKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVY   79 (123)
T ss_pred             eEEEEEEE--CCEEEEEEEcC--CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEE
Confidence            35566666  38999999876  7899999999999999999999999999999986666666554322111  112345


Q ss_pred             EEEEEEEeeccCCCCCccccc
Q 020612          301 MVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       301 mi~f~a~~~~~~i~~d~~Eie  321 (323)
                      ++.|.+....+.+..+ +|+.
T Consensus        80 ~~~f~~~~~~~~~~~~-~E~~   99 (123)
T cd04672          80 KLFFLCEILGGEFKPN-IETS   99 (123)
T ss_pred             EEEEEEEecCCcccCC-Ccee
Confidence            5667777665555554 4543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1.8e-14  Score=117.63  Aligned_cols=84  Identities=25%  Similarity=0.284  Sum_probs=63.3

Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEEEeecCCCCCCCCeeEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQPWPVGPNSMPCQLM  301 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~--v~~~gs~~~~~~~~~~~~~lm  301 (323)
                      +.+++++. ++++||+|++.  .+.|.+|||++++||++++||+||++||||+++..  +++++.+.++..........+
T Consensus         3 ~~~~v~~~-~~~vLl~~r~~--~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (118)
T cd04690           3 AAALILVR-DGRVLLVRKRG--TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRA   79 (118)
T ss_pred             EEEEEEec-CCeEEEEEECC--CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEE
Confidence            44555554 47999998875  57899999999999999999999999999999877  888888766432221123556


Q ss_pred             EEEEEEeec
Q 020612          302 VGFYAYAKS  310 (323)
Q Consensus       302 i~f~a~~~~  310 (323)
                      +.|.+....
T Consensus        80 ~~f~~~~~~   88 (118)
T cd04690          80 TVYVAELTG   88 (118)
T ss_pred             EEEEEcccC
Confidence            666665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1.8e-14  Score=119.80  Aligned_cols=89  Identities=27%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC-----CCCC
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG-----PNSM  296 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~-----~~~~  296 (323)
                      +.+.++|++  +++|||+|+.+...+.|.+|||+||+|||+++||+||++||||+++...++.....+...     ....
T Consensus         2 ~~a~~iv~~--~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04687           2 NSAKAVIIK--NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGH   79 (128)
T ss_pred             cEEEEEEEE--CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCc
Confidence            345666665  589999999765567899999999999999999999999999999876554443222111     1112


Q ss_pred             CeeEEEEEEEEeeccC
Q 020612          297 PCQLMVGFYAYAKSFE  312 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~  312 (323)
                      .+.+++.|.+....+.
T Consensus        80 ~~~i~~~f~~~~~~~~   95 (128)
T cd04687          80 FHQVELMFECKIKSGT   95 (128)
T ss_pred             eeEEEEEEEEEECCCC
Confidence            4567777777765443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1.6e-14  Score=120.39  Aligned_cols=95  Identities=18%  Similarity=0.276  Sum_probs=70.6

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      ++.+++++. +++|||++|..   +.+|+|++ |||++++||++++||+||++||||+++..+..++.+.+....   ..
T Consensus         2 ~~~v~i~~~-~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~---~~   77 (126)
T cd04697           2 ATYIFVFNS-EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDG---NR   77 (126)
T ss_pred             eEEEEEEcC-CCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCC---ce
Confidence            456777776 58999998873   45889999 699999999999999999999999999888888877654321   22


Q ss_pred             eEEEEEEEEeeccCCCCCcccccC
Q 020612          299 QLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      .....|.+.. ..++.++++|+.+
T Consensus        78 ~~~~~f~~~~-~~~~~~~~~E~~~  100 (126)
T cd04697          78 VWGKVFSCVY-DGPLKLQEEEVEE  100 (126)
T ss_pred             EEEEEEEEEE-CCCCCCCHhHhhh
Confidence            3344566554 3455566667654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.58  E-value=9e-15  Score=125.63  Aligned_cols=58  Identities=29%  Similarity=0.541  Sum_probs=51.1

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV  281 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v  281 (323)
                      |++.++|++.++++|||+|+.+  .+.|++|||++|+|||+++||+||++||||+++...
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~--~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~   59 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWK--SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKY   59 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecC--CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceec
Confidence            6788888886567999999875  458999999999999999999999999999988653

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1.7e-14  Score=119.52  Aligned_cols=86  Identities=21%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC-CCeeEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS-MPCQLMV  302 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~-~~~~lmi  302 (323)
                      |.++|++  +++|||+|+.+  .+.|.+|||+|++||++++||+||++||||+++...++++.....+...+ ..+.+.+
T Consensus         4 v~~vi~~--~~~vLl~~~~~--~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04688           4 AAAIIIH--NGKLLVQKNPD--ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF   79 (126)
T ss_pred             EEEEEEE--CCEEEEEEeCC--CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence            4455555  36999999875  68999999999999999999999999999999988888776543222221 1345667


Q ss_pred             EEEEEeeccCC
Q 020612          303 GFYAYAKSFEI  313 (323)
Q Consensus       303 ~f~a~~~~~~i  313 (323)
                      .|.+....+..
T Consensus        80 ~f~~~~~~~~~   90 (126)
T cd04688          80 YYLVTLLDESL   90 (126)
T ss_pred             EEEEEeCCCcc
Confidence            77777665544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=2e-14  Score=119.51  Aligned_cols=97  Identities=28%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             EEEEEEeC-CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEee----cCCCCCCCCe
Q 020612          224 VIMLVIDR-ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP----WPVGPNSMPC  298 (323)
Q Consensus       224 VivlV~~~-~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~----~~~~~~~~~~  298 (323)
                      |.+++++. ++++|||+||.+..+|.|.+|||++++|||+++||+||++|||||.+..+.++....    +.+...+ .+
T Consensus         4 ~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~   82 (129)
T cd04664           4 VLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNG-RV   82 (129)
T ss_pred             EEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCc-eE
Confidence            44555553 258999999886568899999999999999999999999999999987777666543    1111111 33


Q ss_pred             eEEEEEEEEeeccCCCCCccccc
Q 020612          299 QLMVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~~d~~Eie  321 (323)
                      ..++.|.+..........++|+.
T Consensus        83 ~~~~~f~~~~~~~~~~~~~~E~~  105 (129)
T cd04664          83 WTEHPFAFHLPSDAVVTLDWEHD  105 (129)
T ss_pred             EEEeEEEEEcCCCCcccCCcccc
Confidence            45667777765443222334544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.57  E-value=2e-14  Score=122.98  Aligned_cols=65  Identities=28%  Similarity=0.395  Sum_probs=57.0

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ  287 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~  287 (323)
                      .+++.++|++. +++|||+||.+.. +.|.+|||++|+||++.+||+||++||||+++..+..++..
T Consensus         3 ~~~v~~ii~~~-~~~vLL~~r~~~~-~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~   67 (147)
T cd03671           3 RPNVGVVLFNE-DGKVFVGRRIDTP-GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEI   67 (147)
T ss_pred             CceEEEEEEeC-CCEEEEEEEcCCC-CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEc
Confidence            36788888875 5899999998755 89999999999999999999999999999998887877764

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=3.6e-14  Score=116.31  Aligned_cols=97  Identities=31%  Similarity=0.372  Sum_probs=66.9

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC-----CCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-----VGPNS  295 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~-----~~~~~  295 (323)
                      .|+|.++|++. ++++||+||..  .|.|.+|||+++.|||+++|++||++||||+++....+++.+..+     +....
T Consensus         2 ~~~v~~ii~~~-~~~vLl~~r~~--~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04676           2 LPGVTAVVRDD-EGRVLLIRRSD--NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD   78 (129)
T ss_pred             cceEEEEEECC-CCeEEEEEecC--CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC
Confidence            36677777775 48999999876  389999999999999999999999999999998777665432211     11111


Q ss_pred             CCeeEEEEEEEEeeccCCCCCcccc
Q 020612          296 MPCQLMVGFYAYAKSFEINVDKEEL  320 (323)
Q Consensus       296 ~~~~lmi~f~a~~~~~~i~~d~~Ei  320 (323)
                      ..+.+.+.|++....+....+.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~e~  103 (129)
T cd04676          79 VRQYLDITFRCRVVGGELRVGDDES  103 (129)
T ss_pred             cEEEEEEEEEEEeeCCeecCCCCce
Confidence            1245556666665544432333343

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.56  E-value=2.1e-14  Score=121.56  Aligned_cols=55  Identities=35%  Similarity=0.601  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612          224 VIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG  279 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~  279 (323)
                      +++.|++. +++|||+||..   ..+|.|++|||+||+|||+++||+||++|||||++.
T Consensus         6 ~~~~ii~~-~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   63 (141)
T PRK15472          6 IVCPLIQN-DGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL   63 (141)
T ss_pred             EEEEEEec-CCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence            34444443 58999999864   357999999999999999999999999999999864

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=2.4e-14  Score=119.95  Aligned_cols=51  Identities=35%  Similarity=0.538  Sum_probs=45.7

Q ss_pred             CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE
Q 020612          232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV  282 (323)
Q Consensus       232 ~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~  282 (323)
                      .+++|||+||....+|.|.+|||+||+|||+++||+||++||||+++..+.
T Consensus        12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~   62 (131)
T cd04695          12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELY   62 (131)
T ss_pred             CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccc
Confidence            468999999986567899999999999999999999999999999986553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=3e-14  Score=118.31  Aligned_cols=94  Identities=27%  Similarity=0.358  Sum_probs=64.9

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~~~~  296 (323)
                      +|.+++++. +++|||+||..   ..+|.|++| ||++++||++ +||+||++||||+++.  .+..++.+.+...    
T Consensus         2 ~v~v~~~~~-~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~----   75 (127)
T cd04693           2 VVHVCIFNS-KGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE----   75 (127)
T ss_pred             eEEEEEEeC-CCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC----
Confidence            456677775 58999998874   347899998 8999999999 9999999999999875  4555555543321    


Q ss_pred             CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          297 PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ....++.|++......+.++.+|+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~E~~~  101 (127)
T cd04693          76 GFDDYYLFYADVEIGKLILQKEEVDE  101 (127)
T ss_pred             CeEEEEEEEecCcccccccCHHHhhh
Confidence            12233334444444555666667654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=6.7e-14  Score=115.77  Aligned_cols=82  Identities=24%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC-CCeeEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS-MPCQLMV  302 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~-~~~~lmi  302 (323)
                      |.++|++  +++|||+|+..  .+.|.+|||++|+|||+++||+||++||||+++....+++.....+...+ ..+.+++
T Consensus         4 ~~~vi~~--~~~vLlv~~~~--~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~   79 (125)
T cd04689           4 ARAIVRA--GNKVLLARVIG--QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINH   79 (125)
T ss_pred             EEEEEEe--CCEEEEEEecC--CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEE
Confidence            4445554  58999999864  57899999999999999999999999999999988888876543322211 1334556


Q ss_pred             EEEEEee
Q 020612          303 GFYAYAK  309 (323)
Q Consensus       303 ~f~a~~~  309 (323)
                      .|.+...
T Consensus        80 ~f~~~~~   86 (125)
T cd04689          80 IFAVESS   86 (125)
T ss_pred             EEEEEcc
Confidence            6666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=6e-14  Score=119.46  Aligned_cols=100  Identities=25%  Similarity=0.325  Sum_probs=71.1

Q ss_pred             EEEEEEEeCCC--CeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCC-C
Q 020612          223 VVIMLVIDREN--DRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVG-P  293 (323)
Q Consensus       223 vVivlV~~~~~--~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~gs~~~~~~-~  293 (323)
                      +|.++|++.++  +++||++|..   ..+|.|++ |||+|++|||+++||+||++|||||.+  ..+.+++...+.+. .
T Consensus         4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~   83 (144)
T cd04692           4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHI   83 (144)
T ss_pred             EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecccc
Confidence            67788888642  7999999874   45789998 599999999999999999999999976  46777776654432 1


Q ss_pred             CC-CCeeEEEEEEEEeec--cCCCCCcccccC
Q 020612          294 NS-MPCQLMVGFYAYAKS--FEINVDKEELEG  322 (323)
Q Consensus       294 ~~-~~~~lmi~f~a~~~~--~~i~~d~~Eied  322 (323)
                      .. ....+...|.+....  +.+.++++|+.+
T Consensus        84 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~  115 (144)
T cd04692          84 GKLIDREFHHVYLYELKVPLEEFTLQKEEVAG  115 (144)
T ss_pred             CCCccceEEEEEEEeccCChhhcCCChhHhhe
Confidence            11 122355566665543  455566667643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.52  E-value=9e-14  Score=118.67  Aligned_cols=62  Identities=27%  Similarity=0.494  Sum_probs=50.7

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH  284 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~  284 (323)
                      ...|.++|++. +++|||+||.+ .++.|++|||++|+|||+++||+||++||||+++  ..+.++
T Consensus         7 ~~~v~~vi~~~-~~~vLl~~r~~-~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   70 (148)
T PRK09438          7 PVSVLVVIYTP-DLGVLMLQRAD-DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLI   70 (148)
T ss_pred             ceEEEEEEEeC-CCeEEEEEecC-CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeec
Confidence            44566667765 57899998864 3689999999999999999999999999999988  555443

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=9.2e-14  Score=113.08  Aligned_cols=78  Identities=32%  Similarity=0.357  Sum_probs=59.4

Q ss_pred             CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeeccC
Q 020612          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE  312 (323)
Q Consensus       233 ~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~~  312 (323)
                      +++|||+|+.+   |.|++|||+|++||++++||.||++||||+++..+.+++.+...       ...++.|.+......
T Consensus        10 ~~~vLlv~r~~---~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~-------~~~~~~f~~~~~~~~   79 (112)
T cd04667          10 GGRVLLVRKSG---SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGG-------STRHHVFVASVPPSA   79 (112)
T ss_pred             CCEEEEEEcCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeCC-------CEEEEEEEEEcCCcC
Confidence            57999999874   89999999999999999999999999999999888888765421       234556776655443


Q ss_pred             CCCCcccc
Q 020612          313 INVDKEEL  320 (323)
Q Consensus       313 i~~d~~Ei  320 (323)
                      .....+|+
T Consensus        80 ~~~~~~e~   87 (112)
T cd04667          80 QPKPSNEI   87 (112)
T ss_pred             CCCCchhe
Confidence            33233444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=2e-13  Score=113.79  Aligned_cols=85  Identities=29%  Similarity=0.416  Sum_probs=61.6

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecCCCCCCCCe
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~~~~~~~~~  298 (323)
                      +++++++...  +++||++|.. ...|.|.+|||+||+|||+++|++||++||||+++.  .+..+..+.++.     ..
T Consensus         5 ~~av~vl~~~--~~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~~~~~-----~~   77 (118)
T cd04674           5 PVVVALLPVD--DGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDVRSAPD-----GT   77 (118)
T ss_pred             EEEEEEEEEC--CCEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEEecCC-----Ce
Confidence            4555555553  3455555553 446899999999999999999999999999999875  455555555542     45


Q ss_pred             eEEEEEEEEeeccCC
Q 020612          299 QLMVGFYAYAKSFEI  313 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i  313 (323)
                      .+|++|++......+
T Consensus        78 ~~~~~~~~~~~~~~~   92 (118)
T cd04674          78 LLVFGLLPERRAADL   92 (118)
T ss_pred             EEEEEEEeccccccC
Confidence            678888877665554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=1.1e-13  Score=114.06  Aligned_cols=63  Identities=33%  Similarity=0.584  Sum_probs=52.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccC---CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT  285 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g  285 (323)
                      +++.++|++. +++|||+||...   .+|+|++|||++++|||+++|++||++||||+++....+++
T Consensus         2 ~~v~~vv~~~-~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~   67 (129)
T cd04699           2 VAVAALIVKD-VGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYP   67 (129)
T ss_pred             ceEEEEEECC-CCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeee
Confidence            3566666664 489999998753   37899999999999999999999999999999987777643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.51  E-value=1.2e-13  Score=113.81  Aligned_cols=88  Identities=34%  Similarity=0.486  Sum_probs=67.3

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccC---CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      ++|.++|++.+ ++|||+|+.+.   .++.|.+|||++++|||+++||+||++||||+++.....++...+.........
T Consensus         3 ~~v~~ii~~~~-~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    3 RAVGVIIFNED-GKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEETT-TEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CEEEEEEEeCC-cEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            46778888864 59999999874   468999999999999999999999999999999977777776655543322123


Q ss_pred             eEEEEEEEEeec
Q 020612          299 QLMVGFYAYAKS  310 (323)
Q Consensus       299 ~lmi~f~a~~~~  310 (323)
                      ...+.|.+....
T Consensus        82 ~~~~~~~~~~~~   93 (134)
T PF00293_consen   82 EIVIFFIAELPS   93 (134)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEeC
Confidence            455556665543

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=1.5e-13  Score=114.55  Aligned_cols=76  Identities=25%  Similarity=0.222  Sum_probs=57.8

Q ss_pred             CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecCCCCCCC-CeeEEEEEEEEeec
Q 020612          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWPVGPNSM-PCQLMVGFYAYAKS  310 (323)
Q Consensus       233 ~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v-~~~gs~~~~~~~~~~-~~~lmi~f~a~~~~  310 (323)
                      .++|||+++.+  .+.|.+|||+||.|||+++||+||++||||+++... ++++.+.+....... .+...+.|.+.+..
T Consensus        14 ~~~vLLv~~~~--~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~   91 (122)
T cd04666          14 EVEVLLVTSRR--TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTE   91 (122)
T ss_pred             ceEEEEEEecC--CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEEEEEEec
Confidence            46899999875  389999999999999999999999999999998777 888887765432211 23344455555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.50  E-value=5.6e-14  Score=116.57  Aligned_cols=81  Identities=31%  Similarity=0.368  Sum_probs=58.4

Q ss_pred             CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE----eecCCCCCCCCeeEEEEEEEEee
Q 020612          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS----QPWPVGPNSMPCQLMVGFYAYAK  309 (323)
Q Consensus       234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs----~~~~~~~~~~~~~lmi~f~a~~~  309 (323)
                      .++||+|++.   +.|.+|||++++|||+++||+||++||||+++..+.+++.    +.+..  . .....+..|.+.+.
T Consensus        17 ~~vLl~~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~f~~~~~   90 (130)
T cd03428          17 IEYLLLQASY---GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV--R-GKLKTVTYFLAELR   90 (130)
T ss_pred             ceEEEEEccC---CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccc--c-CcceEEEEEEEEeC
Confidence            3799999875   8999999999999999999999999999999877766422    22221  1 12345566777765


Q ss_pred             -ccCCCCCccccc
Q 020612          310 -SFEINVDKEELE  321 (323)
Q Consensus       310 -~~~i~~d~~Eie  321 (323)
                       ...+.++ +|+.
T Consensus        91 ~~~~~~~~-~E~~  102 (130)
T cd03428          91 PDVEVKLS-EEHQ  102 (130)
T ss_pred             CCCccccc-ccee
Confidence             3445555 4544

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=2.5e-13  Score=114.14  Aligned_cols=93  Identities=20%  Similarity=0.234  Sum_probs=62.6

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee-ccEEEEEEee--cCC-CCCC-CC
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHTSQP--WPV-GPNS-MP  297 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v-~~v~~~gs~~--~~~-~~~~-~~  297 (323)
                      +|.++|++  +++|||+++.+  .+.|.+|||+||+|||+++||+||++||||+++ .....++...  ++. ..+. ..
T Consensus         2 ~~~~ii~~--~~~vLLv~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~   77 (131)
T cd04686           2 AVRAIILQ--GDKILLLYTKR--YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIF   77 (131)
T ss_pred             cEEEEEEE--CCEEEEEEEcC--CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCcee
Confidence            35566666  48999999876  468999999999999999999999999999987 4455555542  111 1111 12


Q ss_pred             eeEEEEEEEEeecc--CCCCCccc
Q 020612          298 CQLMVGFYAYAKSF--EINVDKEE  319 (323)
Q Consensus       298 ~~lmi~f~a~~~~~--~i~~d~~E  319 (323)
                      +.+.+.|.+.....  ...+++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~e  101 (131)
T cd04686          78 HMISYYYLCEVDAELGAQQLEDYE  101 (131)
T ss_pred             EEEEEEEEEEEcCCcCCcccchhh
Confidence            33456666665432  34444444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.49  E-value=1.2e-13  Score=123.92  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCC-CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPG-ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~G-Es~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~  296 (323)
                      ..+|++.+...+++++||.||..   .+.|.|+||||++|+| |++++||+||++||||+.+..++++++.+..+...++
T Consensus        31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  110 (190)
T PRK10707         31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY  110 (190)
T ss_pred             CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence            34555545544446899888653   4578999999999985 6899999999999999999999999987643333333


Q ss_pred             CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          297 PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ....++++.+.  .....+|++|+.+
T Consensus       111 ~~~~~v~~~~~--~~~~~~d~~Ev~~  134 (190)
T PRK10707        111 QVTPVVGIIPP--DLPYRANEDEVAA  134 (190)
T ss_pred             EEEEEEEEECC--CCCCCCChhhhhe
Confidence            33333333322  2345566677654

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.48  E-value=2e-13  Score=121.32  Aligned_cols=95  Identities=25%  Similarity=0.381  Sum_probs=66.3

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCcc-cceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w-~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~  297 (323)
                      +++.++|++. +++|||++|..   +.+|.| .+|||+|++|||+++||+||++||||+.+..+.+++++.+...    .
T Consensus        38 ~~~~v~v~~~-~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~----~  112 (180)
T PRK15393         38 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDE----N  112 (180)
T ss_pred             EEEEEEEECC-CCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCC----C
Confidence            4566667775 58999998863   346666 5899999999999999999999999999877777776543321    1


Q ss_pred             eeEE-EEEEEEeeccCCCCCcccccC
Q 020612          298 CQLM-VGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       298 ~~lm-i~f~a~~~~~~i~~d~~Eied  322 (323)
                      ...+ ..|.+. ..+.+.++++|+.+
T Consensus       113 ~~~~~~~f~~~-~~~~~~~~~~E~~~  137 (180)
T PRK15393        113 CRVWGALFSCV-SHGPFALQEEEVSE  137 (180)
T ss_pred             ceEEEEEEEEE-eCCCCCCChHHeeE
Confidence            1222 234443 34556666667643

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.48  E-value=5.3e-13  Score=111.12  Aligned_cols=81  Identities=33%  Similarity=0.535  Sum_probs=62.9

Q ss_pred             EEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      |++++++  ++++||+++.   .+.|.+|||++++||++++||+||++||||+++..+.+++.+......   .......
T Consensus         3 v~vi~~~--~~~vLl~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~---~~~~~~~   74 (118)
T cd04665           3 VLVICFY--DDGLLLVRHK---DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFE---SGFETLV   74 (118)
T ss_pred             EEEEEEE--CCEEEEEEeC---CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCC---CcEEEEE
Confidence            4444444  4899999986   367999999999999999999999999999999999999987654322   2345556


Q ss_pred             EEEEeeccC
Q 020612          304 FYAYAKSFE  312 (323)
Q Consensus       304 f~a~~~~~~  312 (323)
                      |++......
T Consensus        75 y~a~~~~~~   83 (118)
T cd04665          75 YPAVSAQLE   83 (118)
T ss_pred             EEEEEEecc
Confidence            777666443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.47  E-value=4.7e-13  Score=114.90  Aligned_cols=64  Identities=31%  Similarity=0.460  Sum_probs=52.8

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE----EEEEEe
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV----VYHTSQ  287 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v----~~~gs~  287 (323)
                      +|.+++++. +++|||+||..   ..+|.|++|||++++||++++||+||++||+|+.+...    ++++..
T Consensus         3 ~v~viv~~~-~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~   73 (143)
T cd04694           3 GVAVLLQSS-DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLW   73 (143)
T ss_pred             EEEEEEEcC-CCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeee
Confidence            455666665 58999999975   35789999999999999999999999999999988653    565543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.46  E-value=5.2e-13  Score=121.00  Aligned_cols=88  Identities=28%  Similarity=0.338  Sum_probs=67.1

Q ss_pred             cCCcccEEEEEEEeCCCCeEEEEeeccCCCC-------cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 020612          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-------MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW  289 (323)
Q Consensus       217 ypr~~pvVivlV~~~~~~riLL~rr~~~~~g-------~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~  289 (323)
                      +.+.+ +|+++.+++++++|||+||.|++.+       .|++|+|.+|+||++++||+||+.||||+++..+.+++.+.-
T Consensus        46 v~~~~-~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~  124 (202)
T PRK10729         46 FERGH-AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLA  124 (202)
T ss_pred             EEcCC-eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEc
Confidence            44444 4555556655579999999987643       589999999999999999999999999999999888876532


Q ss_pred             CCCCCCCCeeEEEEEEEEe
Q 020612          290 PVGPNSMPCQLMVGFYAYA  308 (323)
Q Consensus       290 ~~~~~~~~~~lmi~f~a~~  308 (323)
                      ..   ++....+..|++..
T Consensus       125 sp---g~~~e~~~~fla~~  140 (202)
T PRK10729        125 SP---GGTSERSSIMVGEV  140 (202)
T ss_pred             CC---CcCceEEEEEEEEE
Confidence            22   23446677777764

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.46  E-value=5.5e-13  Score=115.78  Aligned_cols=65  Identities=29%  Similarity=0.509  Sum_probs=56.6

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ  287 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~  287 (323)
                      .++|.++|++. +++|||+||.+ .++.|++|||++++||++++||.||++||||+++..+++++..
T Consensus         8 ~~~v~~~i~~~-~g~vLL~~r~~-~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~   72 (156)
T PRK00714          8 RPNVGIILLNR-QGQVFWGRRIG-QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAET   72 (156)
T ss_pred             CCeEEEEEEec-CCEEEEEEEcC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEc
Confidence            45778888886 47999999975 3589999999999999999999999999999999888877764

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.46  E-value=2.9e-13  Score=118.22  Aligned_cols=100  Identities=19%  Similarity=0.314  Sum_probs=67.7

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEEEE-EEeecC--CCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYH-TSQPWP--VGP  293 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~-gs~~~~--~~~  293 (323)
                      ..+|.++|++. +++|||+||+.   ..+|.|++| ||+|++|||+++||+||++||||+++..+.++ +...+.  +..
T Consensus        30 ~~~v~v~i~~~-~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  108 (165)
T cd02885          30 HRAFSVFLFNS-KGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG  108 (165)
T ss_pred             eeEEEEEEEcC-CCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence            34566677775 58999999874   357999996 89999999999999999999999998766654 333222  111


Q ss_pred             CCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          294 NSMPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ....+.+.+.|.+... ....++.+|+.+
T Consensus       109 ~~~~~~i~~~f~~~~~-~~~~~~~~Ev~~  136 (165)
T cd02885         109 GLVEHEIDHVFFARAD-VTLIPNPDEVSE  136 (165)
T ss_pred             CceeeEEEEEEEEEeC-CCCCCCccceeE
Confidence            1112234455655543 344456667653

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.45  E-value=5.1e-13  Score=119.40  Aligned_cols=87  Identities=30%  Similarity=0.337  Sum_probs=68.2

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCC-------CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~-------~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      .++|.+++++.+++++||+||.|++       +..|++|||+||+||++++||+||++||||+++..+.++++.....  
T Consensus        44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~--  121 (185)
T TIGR00052        44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSP--  121 (185)
T ss_pred             CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCC--
Confidence            4466666676556899999998743       3578999999999999999999999999999999999888764332  


Q ss_pred             CCCCeeEEEEEEEEeec
Q 020612          294 NSMPCQLMVGFYAYAKS  310 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~~  310 (323)
                       +.....+..|++....
T Consensus       122 -g~~~~~~~~f~a~~~~  137 (185)
T TIGR00052       122 -GGVTELIHLFIAEVDD  137 (185)
T ss_pred             -CCCcEEEEEEEEEEch
Confidence             2344677778887553

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.45  E-value=9.2e-13  Score=117.35  Aligned_cols=83  Identities=24%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +|+++.+++ ++++||+||.+.+  ...|++|||.||+||++++||+||++||||+++..+++++.+....+   .....
T Consensus        49 ~v~v~~~~~-~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~---~~~~~  124 (185)
T PRK11762         49 AVMIVPILD-DDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS---YFSSK  124 (185)
T ss_pred             EEEEEEEeC-CCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC---ccCcE
Confidence            444444543 5799999998643  45799999999999999999999999999999999999987653322   23356


Q ss_pred             EEEEEEEee
Q 020612          301 MVGFYAYAK  309 (323)
Q Consensus       301 mi~f~a~~~  309 (323)
                      ++.|++...
T Consensus       125 ~~~f~a~~~  133 (185)
T PRK11762        125 MNIVLAEDL  133 (185)
T ss_pred             EEEEEEEcc
Confidence            666777543

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.45  E-value=4.3e-13  Score=119.36  Aligned_cols=101  Identities=23%  Similarity=0.359  Sum_probs=69.4

Q ss_pred             cccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEEE-EEEeecC--CC
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVY-HTSQPWP--VG  292 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~~-~gs~~~~--~~  292 (323)
                      ...++.++|++. +++|||+||+.   ..+|.|.+| ||++++|||+++||+||++|||||++..+.. ++.+.+.  ..
T Consensus        33 ~h~av~v~i~~~-~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  111 (184)
T PRK03759         33 LHLAFSCYLFDA-DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDP  111 (184)
T ss_pred             eeeEEEEEEEcC-CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecC
Confidence            355777878875 58999999853   347889875 8999999999999999999999998865443 3333221  11


Q ss_pred             CCCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          293 PNSMPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       293 ~~~~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      .......++..|.+... +.+.++++|+.+
T Consensus       112 ~~~~~~~~~~vf~~~~~-~~~~~~~~Ev~~  140 (184)
T PRK03759        112 NGIVENEVCPVFAARVT-SALQPNPDEVMD  140 (184)
T ss_pred             CCceeeEEEEEEEEEEC-CCCCCChhHeee
Confidence            11112345566777654 456677777654

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.43  E-value=1.4e-12  Score=108.89  Aligned_cols=81  Identities=27%  Similarity=0.383  Sum_probs=59.7

Q ss_pred             EEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612          225 IMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (323)
Q Consensus       225 ivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi  302 (323)
                      +++|++. +++|||+||..  ...|+|++|||+||+|||+++|++||++||||+++....+++...+.+..   ....+.
T Consensus         7 ~~~ii~~-~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~   82 (135)
T PRK10546          7 VAAIIER-DGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSG---RRIHLH   82 (135)
T ss_pred             EEEEEec-CCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCC---cEEEEE
Confidence            3334443 58999998864  35789999999999999999999999999999998777777776665432   122344


Q ss_pred             EEEEEee
Q 020612          303 GFYAYAK  309 (323)
Q Consensus       303 ~f~a~~~  309 (323)
                      .|.+...
T Consensus        83 ~~~~~~~   89 (135)
T PRK10546         83 AWHVPDF   89 (135)
T ss_pred             EEEEEEe
Confidence            4555443

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.43  E-value=1.5e-12  Score=106.96  Aligned_cols=67  Identities=25%  Similarity=0.461  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      ++++|.+ .++++||+||..  ..+|+|++|||++++||++++|+.||++||||+++....+++...+.+
T Consensus         7 ~~~ii~~-~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~   75 (129)
T PRK10776          7 AVGIIRN-PNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEF   75 (129)
T ss_pred             EEEEEEC-CCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeC
Confidence            3344444 357999999975  347899999999999999999999999999999987777777666655

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.43  E-value=7.9e-13  Score=111.38  Aligned_cols=84  Identities=19%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE-----eecCC--CC--CCCCeeEEE
Q 020612          232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-----QPWPV--GP--NSMPCQLMV  302 (323)
Q Consensus       232 ~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs-----~~~~~--~~--~~~~~~lmi  302 (323)
                      +++++||+|+.....|.|+||||+||+|||+++||+||++||||+.+.. ..++.     +.+.+  ..  ........+
T Consensus        11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (132)
T cd04661          11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKVF   89 (132)
T ss_pred             cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEEE
Confidence            3678999998754468999999999999999999999999999997643 22222     22211  10  011224566


Q ss_pred             EEEEEeeccCCCCC
Q 020612          303 GFYAYAKSFEINVD  316 (323)
Q Consensus       303 ~f~a~~~~~~i~~d  316 (323)
                      .|.+...++++.++
T Consensus        90 ~f~~~~~~g~~~~~  103 (132)
T cd04661          90 FFKARYMSGQFELS  103 (132)
T ss_pred             EEEEEEecCccccC
Confidence            77777777766543

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.42  E-value=2.1e-12  Score=104.70  Aligned_cols=85  Identities=28%  Similarity=0.339  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +++++|++. ++++||++|++.  .+|+|++|||+++.+|+++++|.||++||||+++...++++...+.+..   ....
T Consensus         3 ~~~~~i~~~-~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~---~~~~   78 (124)
T cd03425           3 VVAAIIIDD-DGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPD---KRVT   78 (124)
T ss_pred             EEEEEEECC-CCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCC---CeEE
Confidence            455566664 489999998753  5889999999999999999999999999999998887888877766532   2345


Q ss_pred             EEEEEEEeecc
Q 020612          301 MVGFYAYAKSF  311 (323)
Q Consensus       301 mi~f~a~~~~~  311 (323)
                      +..|.+....+
T Consensus        79 ~~~~~~~~~~~   89 (124)
T cd03425          79 LHVFLVELWSG   89 (124)
T ss_pred             EEEEEEeeeCC
Confidence            56666655433

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.42  E-value=2.8e-12  Score=111.77  Aligned_cols=81  Identities=28%  Similarity=0.307  Sum_probs=63.6

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi  302 (323)
                      .|.+++..  ++++||+++.+   ..|++|||++|+|||+++||+||++||||+.+..+++++.+....   +.....+.
T Consensus        26 ~V~ii~~~--~~~~LL~~~~~---~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~---~~~~~~~~   97 (156)
T TIGR02705        26 HVLVIPRY--KDQWLLTEHKR---RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEG---ESTDFVKD   97 (156)
T ss_pred             EEEEEEEE--CCEEEEEEEcC---CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecC---CCcEEEEE
Confidence            44444444  36899998874   459999999999999999999999999999999999999765432   12557778


Q ss_pred             EEEEEeecc
Q 020612          303 GFYAYAKSF  311 (323)
Q Consensus       303 ~f~a~~~~~  311 (323)
                      .|+|.....
T Consensus        98 vf~A~~~~~  106 (156)
T TIGR02705        98 VYFAEVSAL  106 (156)
T ss_pred             EEEEEEecc
Confidence            888877643

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=2.8e-12  Score=102.90  Aligned_cols=89  Identities=30%  Similarity=0.355  Sum_probs=64.7

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi  302 (323)
                      ++.+++++. ++++||++|.+.+.|+|.+|||+++.||++.++++||++||+|+.+....+.+...+..... .....++
T Consensus         2 ~~~~i~~~~-~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (123)
T cd02883           2 AVGAVILDE-DGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDE-GEHAVVF   79 (123)
T ss_pred             ceEEEEECC-CCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCC-CceEEEE
Confidence            456666664 37999999886567899999999999999999999999999999886555555543332211 1346667


Q ss_pred             EEEEEeeccCC
Q 020612          303 GFYAYAKSFEI  313 (323)
Q Consensus       303 ~f~a~~~~~~i  313 (323)
                      .|.+.......
T Consensus        80 ~~~~~~~~~~~   90 (123)
T cd02883          80 VFLARLVGGEP   90 (123)
T ss_pred             EEEEEeCCCCc
Confidence            77776654433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.38  E-value=2.6e-12  Score=124.87  Aligned_cols=94  Identities=28%  Similarity=0.303  Sum_probs=64.8

Q ss_pred             cccCCcccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE------e
Q 020612          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS------Q  287 (323)
Q Consensus       215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs------~  287 (323)
                      .-||.+..++.++|+.  +++|||+||.. +.+|.|.+|||+||+|||+++||+||++|||||++....+.+.      +
T Consensus       197 ~~~~~~~vtv~avv~~--~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f  274 (340)
T PRK05379        197 APYPPTFVTVDAVVVQ--SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVF  274 (340)
T ss_pred             cCCCCcceEEEEEEEE--CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEE
Confidence            3466655555555555  47999999875 4478999999999999999999999999999998754443332      1


Q ss_pred             ecCCCCCCCCeeEEEEEEEEeecc
Q 020612          288 PWPVGPNSMPCQLMVGFYAYAKSF  311 (323)
Q Consensus       288 ~~~~~~~~~~~~lmi~f~a~~~~~  311 (323)
                      .++.... ....+.+.|++....+
T Consensus       275 ~~p~r~~-~~~~i~~~f~~~~~~~  297 (340)
T PRK05379        275 DHPGRSL-RGRTITHAFLFEFPAG  297 (340)
T ss_pred             cCCCCCC-CCcEEEEEEEEEecCC
Confidence            2221111 1245667777765533

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.38  E-value=1.9e-12  Score=112.49  Aligned_cols=97  Identities=24%  Similarity=0.333  Sum_probs=65.5

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEE--EEEEeecCCC-C
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVV--YHTSQPWPVG-P  293 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~--~~gs~~~~~~-~  293 (323)
                      ..++.++|++. +++|||+||+.   ..+|+|++| ||+++.||  .+||+||++|||||++..++  .++...+... .
T Consensus        27 h~~v~v~v~~~-~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~  103 (158)
T TIGR02150        27 HRAFSVFLFNE-EGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDA  103 (158)
T ss_pred             EEEEEEEEEcC-CCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecC
Confidence            34566777765 58999999874   458999997 89999999  49999999999999886553  3332222211 1


Q ss_pred             CCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          294 NSMPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ++ ...++..|.+.... .+.++++|+++
T Consensus       104 ~g-~~~~~~~f~~~~~~-~~~~~~~Ev~~  130 (158)
T TIGR02150       104 WG-EHELCPVFFARAPV-PLNPNPEEVAE  130 (158)
T ss_pred             CC-cEEEEEEEEEecCC-cccCChhHeee
Confidence            12 23455666665543 56666667764

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>TIGR00586 mutt mutator mutT protein

Probab=99.35  E-value=9.2e-12  Score=102.65  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=53.4

Q ss_pred             EEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      +.++|++ +++++||+||..  ...|+|++|||.++.||++++|++||++||||+++....+++...+.+
T Consensus         7 ~~~ii~~-~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~   75 (128)
T TIGR00586         7 AVGIIRN-ENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFY   75 (128)
T ss_pred             EEEEEEC-CCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEEC
Confidence            3344444 357999999874  347899999999999999999999999999999987666666655544

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.35  E-value=2.7e-12  Score=113.50  Aligned_cols=96  Identities=20%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             EEEeCC-CCeEEEEeecc---CCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeecc---EEEEEEeecCC--CCCCC
Q 020612          227 LVIDRE-NDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE---VVYHTSQPWPV--GPNSM  296 (323)
Q Consensus       227 lV~~~~-~~riLL~rr~~---~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~~---v~~~gs~~~~~--~~~~~  296 (323)
                      ++.+.+ +++|+++||+.   ..||+|+ +|||+|+.|||+++||+||++|||||++..   +.+++...+.+  .....
T Consensus        40 ~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~  119 (180)
T cd03676          40 YVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGL  119 (180)
T ss_pred             EEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcE
Confidence            344543 37999999974   4689995 899999999999999999999999998765   44555433322  12222


Q ss_pred             CeeEEEEEEEEeecc-CCCCCcccccC
Q 020612          297 PCQLMVGFYAYAKSF-EINVDKEELEG  322 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~-~i~~d~~Eied  322 (323)
                      ...+++.|.+..... .+.++++|+.+
T Consensus       120 ~~e~~~~f~~~~~~~~~~~~~~~Ev~~  146 (180)
T cd03676         120 QPEVEYVYDLELPPDFIPAPQDGEVES  146 (180)
T ss_pred             eeeEEEEEEEEcCCCCeeCCCCCcEeE
Confidence            334555566654322 35567777764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PLN02709 nudix hydrolase

Probab=99.33  E-value=6.5e-12  Score=115.13  Aligned_cols=98  Identities=17%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             cEEEEEEEeC-----CCCeEEEEeecc---CCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612          222 PVVIMLVIDR-----ENDRVLLSRQSR---FVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (323)
Q Consensus       222 pvVivlV~~~-----~~~riLL~rr~~---~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~  292 (323)
                      .+|.+.++..     .+.+|||.+|+.   ..+|.|+||||++|++| ++.+||+||++||+||....++.+|..+....
T Consensus        34 AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t  113 (222)
T PLN02709         34 SAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN  113 (222)
T ss_pred             cEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC
Confidence            3455555542     234899999985   46899999999999975 79999999999999999998999887654333


Q ss_pred             CCCCCeeEEEEEEEEee---ccCCCCCcccccC
Q 020612          293 PNSMPCQLMVGFYAYAK---SFEINVDKEELEG  322 (323)
Q Consensus       293 ~~~~~~~lmi~f~a~~~---~~~i~~d~~Eied  322 (323)
                      ..+   ..+.-|.+.+.   ...+.++++|+++
T Consensus       114 ~sg---~~V~P~V~~~~~~~~~~~~~np~EV~~  143 (222)
T PLN02709        114 KKG---MSVAPVIGFLHDKKAFKPLPNPAEVEE  143 (222)
T ss_pred             CCC---CEEEEEEEEecCCCCccccCChhhhhe
Confidence            333   23444454443   2344578888875

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=1.1e-11  Score=104.98  Aligned_cols=86  Identities=34%  Similarity=0.315  Sum_probs=59.7

Q ss_pred             EEEEEEEeCCCCeEEEEeeccC---CCCcccceeeecCCCCCHHHHHHHHHHHHhCCee-ccEEEEEEee--cCCCCCCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSRF---VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV-GEVVYHTSQP--WPVGPNSM  296 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~---~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v-~~v~~~gs~~--~~~~~~~~  296 (323)
                      ++-+++++. +++|||+|+...   ..+.|.+|||+|+.||++++|++||++||||+++ .....+....  +.+... .
T Consensus         2 ~~~~~i~~~-~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~-~   79 (133)
T cd04685           2 AARVVLLDP-DDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV-D   79 (133)
T ss_pred             eEEEEEEcC-CCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc-c
Confidence            356777775 589999988653   4679999999999999999999999999999988 4444433322  211111 1


Q ss_pred             CeeEEEEEEEEeec
Q 020612          297 PCQLMVGFYAYAKS  310 (323)
Q Consensus       297 ~~~lmi~f~a~~~~  310 (323)
                      .++..+.|.+....
T Consensus        80 ~~~~~~~f~~~~~~   93 (133)
T cd04685          80 GRQEERFFLARTPR   93 (133)
T ss_pred             ceeeEEEEEEEcCC
Confidence            23445566666543

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.32  E-value=1.3e-11  Score=110.93  Aligned_cols=84  Identities=27%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCC------C--cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVP------R--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~------g--~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      .+|.+++++.++++|||+||.|++.      +  .|++|||.+|+| ++++||+||++||||+.+..+.+++++. +  .
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~-~--s  121 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELY-M--S  121 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEE-c--C
Confidence            3555666676568999999998653      4  578999999976 6999999999999999999999988752 2  2


Q ss_pred             CCCCeeEEEEEEEEee
Q 020612          294 NSMPCQLMVGFYAYAK  309 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~  309 (323)
                      .++....++.|+|...
T Consensus       122 pG~s~e~~~lf~a~~~  137 (191)
T PRK15009        122 PGGVTELIHFFIAEYS  137 (191)
T ss_pred             CcccCcEEEEEEEEEC
Confidence            2345567778888753

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.27  E-value=3.5e-11  Score=101.41  Aligned_cols=51  Identities=31%  Similarity=0.255  Sum_probs=42.1

Q ss_pred             EeCCCCeEEEEeecc-----CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612          229 IDRENDRVLLSRQSR-----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG  279 (323)
Q Consensus       229 ~~~~~~riLL~rr~~-----~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~  279 (323)
                      .+.+..+|||++|..     ...+.|++|||+++.||++++||+||++||||+++.
T Consensus        10 ~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662          10 FRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             EcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            343345799998732     336789999999999999999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK08999 hypothetical protein; Provisional

Probab=99.13  E-value=3.7e-10  Score=107.84  Aligned_cols=68  Identities=32%  Similarity=0.480  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      ++.++|++. ++++||+||..  .+.|+|++|||++|+||++++|+.||++||||+.+.....+++..+.+
T Consensus         7 ~~~~vi~~~-~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~   76 (312)
T PRK08999          7 VAAGVIRDA-DGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDY   76 (312)
T ss_pred             EEEEEEECC-CCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEc
Confidence            334444443 58999998864  457899999999999999999999999999999987777777766655

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.11  E-value=6e-10  Score=90.87  Aligned_cols=68  Identities=34%  Similarity=0.407  Sum_probs=52.6

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHH-HHHHHHHHHhCCeec--cEEEEEEeecCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE-AVRRETWEETGIEVG--EVVYHTSQPWPV  291 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~ee-Aa~REv~EEtGL~v~--~v~~~gs~~~~~  291 (323)
                      .+.+++......++|+.++.... +.|.+|||+||+||++++ ||+||++||||+.+.  ...+++.++...
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~-~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   83 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG-GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSP   83 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC-CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcc
Confidence            44444444322788888887633 699999999999999888 999999999999988  677777765544

>PF09296 NUDIX-like: NADH pyrophosphatase-like rudimentary NUDIX domain; InterPro: IPR015375 This entry represents the N-terminal domain found in NADH pyrophosphatase

Probab=99.10  E-value=3e-10  Score=89.95  Aligned_cols=98  Identities=28%  Similarity=0.341  Sum_probs=54.9

Q ss_pred             CeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccccc
Q 020612           64 DFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG  143 (323)
Q Consensus        64 ~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~~~  143 (323)
                      ++|+++|+++++|+...++.  .  .+......+..         ......+|||.. +++.+|||++++..... ....
T Consensus         1 ~a~~~~~~~~~~lv~~~~~~--~--~~~~~~~~~~~---------~~~~~~~~LG~~-~gg~~~fa~~~~~~~~~-~~~~   65 (98)
T PF09296_consen    1 SARWLLFSGGRLLVKKDGGD--L--LLPPGDAAELG---------LPEEEAVFLGED-EGGQPCFAVDLSEEPDS-QLEL   65 (98)
T ss_dssp             -EEEEEEETTEEE-GG------G--S--EEEGGGGT----------TTSEEEEEEEE-TT-EEEEEEE---SS-------
T ss_pred             CEEEEEEECCEEEEecCccc--e--eecccchhhcc---------CCCCcEEEeeec-CCEeEEEEEEcCccccc-cccc
Confidence            47999999999999763321  1  22222222221         145678999986 33499999999877641 1113


Q ss_pred             ccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhh
Q 020612          144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEW  182 (323)
Q Consensus       144 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W  182 (323)
                      ..+..|.+||+++..+      ++.+++++++|++|++|
T Consensus        66 ~~~~~~~~LR~~~~~l------~~~~~~l~a~A~~ll~W   98 (98)
T PF09296_consen   66 PEGFEFVDLRQLGGQL------PEEDAGLAARARQLLDW   98 (98)
T ss_dssp             -----EE-GGGGT-TS-------HHHHHHHHHHHHHHH-
T ss_pred             cccccchhHHHHHHcC------CHHHHHHHHHHHHHhcC
Confidence            5678999999998665      45789999999999999

Nitrate reductase inactivator (NRI) protein shares 51.1-68.3% of its amino acid sequence with three types of the nucleotide pyrophosphatase-like protein from Arabidopsis thaliana.; GO: 0016787 hydrolase activity; PDB: 1VK6_A 2GB5_A.

>PLN02791 Nudix hydrolase homolog

Probab=98.97  E-value=2.6e-09  Score=113.05  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCC--C
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPV--G  292 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~gs~~~~~--~  292 (323)
                      ..++.++|++.++++|||+||+.   .+||+|++ +||+++.||+.++|++||++||+||.+  ..+.+++++.+..  .
T Consensus        32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~  111 (770)
T PLN02791         32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIN  111 (770)
T ss_pred             eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeecc
Confidence            34778888886568999999974   56899998 799999999999999999999999975  3456666532211  1


Q ss_pred             CCCC-CeeEEEEEEEEee----ccCCCCCcccccC
Q 020612          293 PNSM-PCQLMVGFYAYAK----SFEINVDKEELEG  322 (323)
Q Consensus       293 ~~~~-~~~lmi~f~a~~~----~~~i~~d~~Eied  322 (323)
                      ...+ .+.+...|++...    ..+++++++|+++
T Consensus       112 ~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~  146 (770)
T PLN02791        112 DGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSA  146 (770)
T ss_pred             CCCcceeeEEEEEEEEECCCCCcccCCCChhhhhe
Confidence            1111 2234445554432    2356788889875

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.97  E-value=3.7e-09  Score=89.17  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=36.8

Q ss_pred             CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee
Q 020612          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV  278 (323)
Q Consensus       234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v  278 (323)
                      .+||+.|...   +.|.+|||+|++||++++||+||++||||+++
T Consensus        14 ~~ll~~r~~~---~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663          14 LELLVFEHPL---AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEEcCC---CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            3777776653   56999999999999999999999999999987

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PLN03143 nudix hydrolase; Provisional

Probab=98.93  E-value=5.3e-09  Score=99.69  Aligned_cols=69  Identities=23%  Similarity=0.383  Sum_probs=49.5

Q ss_pred             ccCCcccEEEEEEEeCCC-CeEEEEeeccCCCC--cccceeeecCC-CCCHHHHHHHHHHHHhCCeec--cEEEE
Q 020612          216 IYPRVDPVVIMLVIDREN-DRVLLSRQSRFVPR--MWSCIAGFIEP-GESLEEAVRRETWEETGIEVG--EVVYH  284 (323)
Q Consensus       216 ~ypr~~pvVivlV~~~~~-~riLL~rr~~~~~g--~w~lPgG~VE~-GEs~eeAa~REv~EEtGL~v~--~v~~~  284 (323)
                      .|.+...|+++++++.++ .+++|+||.|.+.|  .|++|||.+|+ +|++++||+||++||||+.+.  .+..+
T Consensus       124 v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L  198 (291)
T PLN03143        124 VFARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDL  198 (291)
T ss_pred             EEEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEe
Confidence            344444444444444332 34999999986544  67899999997 489999999999999999853  45444

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=98.91  E-value=8e-09  Score=96.42  Aligned_cols=100  Identities=14%  Similarity=0.305  Sum_probs=63.8

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCC-----------------HHHHHHHHHHHHhCCeecc
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGES-----------------LEEAVRRETWEETGIEVGE  280 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs-----------------~eeAa~REv~EEtGL~v~~  280 (323)
                      -++.++|++. +++|||+||+.   ..||+|+.. +|++..||+                 ..+||+||++||+||.+..
T Consensus        57 ra~~v~i~n~-~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~  135 (247)
T PLN02552         57 RAFSVFLFNS-KYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAED  135 (247)
T ss_pred             EEEEEEEEcC-CCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccc
Confidence            3677888886 58999999974   468999654 455554422                 6899999999999998543


Q ss_pred             -----EEEEEEeecCCCCC------C-C-CeeEEEEEEEE-eeccCCCCCcccccC
Q 020612          281 -----VVYHTSQPWPVGPN------S-M-PCQLMVGFYAY-AKSFEINVDKEELEG  322 (323)
Q Consensus       281 -----v~~~gs~~~~~~~~------~-~-~~~lmi~f~a~-~~~~~i~~d~~Eied  322 (323)
                           +.+++++.+.....      + . .+.+.+.|+.. ...+++.++++|+.+
T Consensus       136 ~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~  191 (247)
T PLN02552        136 VPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVAD  191 (247)
T ss_pred             cccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhhe
Confidence                 56666544332111      1 0 12222233332 234578889999876

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=98.85  E-value=1.3e-08  Score=91.31  Aligned_cols=43  Identities=21%  Similarity=0.427  Sum_probs=38.2

Q ss_pred             CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee
Q 020612          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV  278 (323)
Q Consensus       234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v  278 (323)
                      -++|++||..  .|.|.+|||+|++||++++|++||++||||+.+
T Consensus        49 l~vLl~~r~~--~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          49 LQFVAIKRPD--SGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             eEEEEEEeCC--CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            3788888865  689999999999999999999999999997653

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.76  E-value=1.8e-08  Score=85.97  Aligned_cols=62  Identities=34%  Similarity=0.446  Sum_probs=49.1

Q ss_pred             EEEEEeCCCC--eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612          225 IMLVIDREND--RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ  287 (323)
Q Consensus       225 ivlV~~~~~~--riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~  287 (323)
                      .++.+..+++  +|||+..++. +..|.+|+|++|++|+..+||.||++||.|+.-...+.++..
T Consensus        13 gCi~~r~~~~~ieVLlvsSs~~-~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~   76 (145)
T KOG2839|consen   13 GCICYRSDKEKIEVLLVSSSKK-PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGF   76 (145)
T ss_pred             EeeeeeecCcceEEEEEecCCC-CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccch
Confidence            3444444444  8999988753 457999999999999999999999999999998777755543

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.76  E-value=2.3e-08  Score=91.52  Aligned_cols=112  Identities=22%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             CCCcccCCcccEEEEEEEeC--CCCeEEEEeecc---CCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCeeccEEEEE
Q 020612          212 CKKRIYPRVDPVVIMLVIDR--ENDRVLLSRQSR---FVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVVYHT  285 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~~~--~~~riLL~rr~~---~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v~~v~~~g  285 (323)
                      |....+|+...+|.+.+++.  .+.++||.||++   .+.|.-+||||..|+.+ +-+++|.||..||.|+....+.++|
T Consensus        34 ~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g  113 (246)
T KOG3069|consen   34 SETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLG  113 (246)
T ss_pred             cccccCCCCCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhh
Confidence            44455566666666666665  235899999985   46788999999999865 7789999999999999988888877


Q ss_pred             EeecCCCCCCCCeeEEEEEEEEeec-cCCCCCcccccCC
Q 020612          286 SQPWPVGPNSMPCQLMVGFYAYAKS-FEINVDKEELEGT  323 (323)
Q Consensus       286 s~~~~~~~~~~~~~lmi~f~a~~~~-~~i~~d~~EiedA  323 (323)
                      ..+-.+...+....-+++|.....- ....++.+|++++
T Consensus       114 ~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~  152 (246)
T KOG3069|consen  114 ALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESA  152 (246)
T ss_pred             hccceeeccCcccceeEEEEecccccccccCCchheeee
Confidence            6543332233344556666654432 4566777887754

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.73  E-value=1.1e-07  Score=84.89  Aligned_cols=62  Identities=32%  Similarity=0.433  Sum_probs=50.1

Q ss_pred             ccCCcccEEEEEEEeCCC-CeEEEEeeccCCCCcc--cceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612          216 IYPRVDPVVIMLVIDREN-DRVLLSRQSRFVPRMW--SCIAGFIEPGESLEEAVRRETWEETGIE  277 (323)
Q Consensus       216 ~ypr~~pvVivlV~~~~~-~riLL~rr~~~~~g~w--~lPgG~VE~GEs~eeAa~REv~EEtGL~  277 (323)
                      .+-+.+.+.|..++..++ -.|+|++|.|++-|.+  ++|+|-|+.||++++||+||++||||+.
T Consensus        69 ~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~  133 (225)
T KOG3041|consen   69 VEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK  133 (225)
T ss_pred             ccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc
Confidence            455566666666655432 2689999999888865  5899999999999999999999999998

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=98.64  E-value=9.4e-09  Score=66.32  Aligned_cols=32  Identities=41%  Similarity=0.943  Sum_probs=23.2

Q ss_pred             ccCCCCCCCCCCCeeccCCccccccCCCCCCccc
Q 020612          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIY  217 (323)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~y  217 (323)
                      ++|+||++||++|....+||.++|+  .|+.++|
T Consensus         1 ~~~rfC~~CG~~t~~~~~g~~r~C~--~Cg~~~y   32 (32)
T PF09297_consen    1 RNHRFCGRCGAPTKPAPGGWARRCP--SCGHEHY   32 (32)
T ss_dssp             HTTSB-TTT--BEEE-SSSS-EEES--SSS-EE-
T ss_pred             CCCcccCcCCccccCCCCcCEeECC--CCcCEeC
Confidence            4799999999999999999999997  7999887

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=9.3e-07  Score=83.85  Aligned_cols=64  Identities=25%  Similarity=0.320  Sum_probs=51.9

Q ss_pred             ccCCcccEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeecc
Q 020612          216 IYPRVDPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE  280 (323)
Q Consensus       216 ~ypr~~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~  280 (323)
                      .+-.....|.++|+|.. ++||+++...   -..|.|-+|+|.|++||++-++++|||+||||++-..
T Consensus       110 ~~Ash~vgvg~~V~n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef  176 (295)
T KOG0648|consen  110 ANASHRVGVGAFVLNKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF  176 (295)
T ss_pred             CchhhheeeeeeEecCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh
Confidence            34444567788888875 8999988643   2378999999999999999999999999999996543

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.18  E-value=1.5e-05  Score=64.20  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=50.3

Q ss_pred             CCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEee
Q 020612          233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK  309 (323)
Q Consensus       233 ~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~  309 (323)
                      ++++||.||..  ...|+|+||+|.++.+|+.+++..||+.||.++   ....++...+.++..   ...+..|.+...
T Consensus        13 ~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~---~~~~~~~~~~~~   85 (118)
T cd03431          13 DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHF---RLTLHVYLARLE   85 (118)
T ss_pred             CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCe---EEEEEEEEEEEe
Confidence            58999999964  568999999999999999999999999999775   223344555554321   133444555443

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.15  E-value=5.3e-06  Score=73.08  Aligned_cols=109  Identities=20%  Similarity=0.332  Sum_probs=73.5

Q ss_pred             CCCcccCCcccEEEEEEEeCCCCeEEEEeec---cCCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeecc---EEEE
Q 020612          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQS---RFVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE---VVYH  284 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~---~~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~~---v~~~  284 (323)
                      |....-|+..-+..++++|. +|++||.||.   +-+++.|. -..|+--+||+.++|++|-+.+|+||++..   .+++
T Consensus        24 ~Ht~d~~~LHrAFS~~lFne-~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il  102 (185)
T COG1443          24 AHTGDTPRLHRAFSSFLFNE-RGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEIL  102 (185)
T ss_pred             hhccccHHHHhhhheeEECC-CCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccc
Confidence            33444454455678899997 5999999996   35789996 578999999999999999999999998762   2222


Q ss_pred             EEeecCCCC-CC-CCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          285 TSQPWPVGP-NS-MPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       285 gs~~~~~~~-~~-~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ..+.|.-.. ++ ....+-..+.+...+ .+.++++|+.+
T Consensus       103 ~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~~npdEV~~  141 (185)
T COG1443         103 PRFRYRAADPDGIVENEICPVLAARLDS-ALDPNPDEVMD  141 (185)
T ss_pred             cceEEeccCCCCcceeeeeeEEEEeecC-CCCCChHHhhh
Confidence            222222111 11 122344444555444 78888899875

>PLN02839 nudix hydrolase

Probab=98.00  E-value=2.3e-05  Score=76.68  Aligned_cols=89  Identities=18%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCeEEEEeecc---CCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecCCCC-CC-CCeeEEEE
Q 020612          233 NDRVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWPVGP-NS-MPCQLMVG  303 (323)
Q Consensus       233 ~~riLL~rr~~---~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~---~v~~~gs~~~~~~~-~~-~~~~lmi~  303 (323)
                      +.++.+.||+.   ..||+|+ +.||.|..||++.++++||.+||.||...   .+...|...|.... .+ .+..++ .
T Consensus       217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly-~  295 (372)
T PLN02839        217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLF-C  295 (372)
T ss_pred             CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEE-E
Confidence            35788888874   4689996 68999999999999999999999999643   55666665554211 11 122332 3


Q ss_pred             EEEEeecc-CCCCCcccccC
Q 020612          304 FYAYAKSF-EINVDKEELEG  322 (323)
Q Consensus       304 f~a~~~~~-~i~~d~~Eied  322 (323)
                      |-.+...+ .++.+++|+++
T Consensus       296 YDLeLP~df~P~~qDGEVe~  315 (372)
T PLN02839        296 YDLELPQDFVPKNQDGEVES  315 (372)
T ss_pred             eeeecCCccccCCCccceeE
Confidence            44333322 23456778764

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=97.78  E-value=9.3e-05  Score=62.19  Aligned_cols=53  Identities=36%  Similarity=0.307  Sum_probs=40.8

Q ss_pred             eEEEEeecc-C----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec-cEEEEEEe
Q 020612          235 RVLLSRQSR-F----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG-EVVYHTSQ  287 (323)
Q Consensus       235 riLL~rr~~-~----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~-~v~~~gs~  287 (323)
                      .|||++.-. +    ..|-|++|.|-+..||.++.||+||..||+||.++ ....+|+.
T Consensus        19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~   77 (161)
T COG4119          19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL   77 (161)
T ss_pred             EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh
Confidence            455555443 1    15789999999999999999999999999999984 33455554

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=97.25  E-value=9.6e-05  Score=48.35  Aligned_cols=29  Identities=24%  Similarity=0.637  Sum_probs=17.3

Q ss_pred             CCCCCCCCCCeec----cCCccccccCCCCCCccc
Q 020612          187 RFCGHCGEKTIPK----EAGKLKQCSNASCKKRIY  217 (323)
Q Consensus       187 ~fC~~CG~~~~~~----~~g~~~~C~~~~C~~~~y  217 (323)
                      +||+.||+++...    +.-.+..|+  .|+.++|
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~--~Cg~IhY   33 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCP--ACGFIHY   33 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEET--TTTEEE-
T ss_pred             CccccccChhhhhcCCCCCccceECC--CCCCEEe
Confidence            6999999999764    344566997  7999998

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.0012  Score=60.48  Aligned_cols=38  Identities=24%  Similarity=0.540  Sum_probs=33.2

Q ss_pred             eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHh
Q 020612          235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET  274 (323)
Q Consensus       235 riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEt  274 (323)
                      +++.++|+.  .|.|.+|||.|++||.+-.+++||+.||.
T Consensus       140 e~vavkr~d--~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  140 EFVAVKRPD--NGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             EEEEEecCC--CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            455666665  78999999999999999999999999996

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=96.84  E-value=0.002  Score=52.38  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             EEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       226 vlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      +++++ .++++||.||..  ...|+|+||.--++. ++..+.+.+.+.+..|+.+.....++...+.|+..   ...+..
T Consensus         2 ~~i~~-~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~---~~~~~~   76 (114)
T PF14815_consen    2 LLIIR-SQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHR---RWTIHV   76 (114)
T ss_dssp             EEEEE-TTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSE---EEEEEE
T ss_pred             EEEEE-eCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccce---EEEEEE
Confidence            34444 469999999974  568999999988874 33366667777788898877777788877776432   244556


Q ss_pred             EEEEeecc
Q 020612          304 FYAYAKSF  311 (323)
Q Consensus       304 f~a~~~~~  311 (323)
                      |.+.+...
T Consensus        77 ~~~~~~~~   84 (114)
T PF14815_consen   77 YEVEVSAD   84 (114)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEecCC
Confidence            66665543

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.47  E-value=0.0029  Score=60.22  Aligned_cols=93  Identities=25%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             cCCcccEEEEEEEeCCCCeEEEEeeccCC----------CC------cc-----------cceeeecCCCCCHHHHHHHH
Q 020612          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFV----------PR------MW-----------SCIAGFIEPGESLEEAVRRE  269 (323)
Q Consensus       217 ypr~~pvVivlV~~~~~~riLL~rr~~~~----------~g------~w-----------~lPgG~VE~GEs~eeAa~RE  269 (323)
                      |-.....|.+++++++-.++||+|+.|..          +|      -|           ++.||.|+...|+.+-|..|
T Consensus        22 ~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~ee  101 (405)
T KOG4432|consen   22 FNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEE  101 (405)
T ss_pred             HHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHH
Confidence            33334455666677777899999997521          11      13           46799999999999999999


Q ss_pred             HHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeec
Q 020612          270 TWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS  310 (323)
Q Consensus       270 v~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~  310 (323)
                      |.||.|++|..-.++..+.+..+... ..+-|..|||++..
T Consensus       102 v~eecgy~v~~d~l~hv~~~~~g~~~-s~sa~~l~y~ei~e  141 (405)
T KOG4432|consen  102 VAEECGYRVDPDDLIHVITFVVGAHQ-SGSAQHLYYAEIDE  141 (405)
T ss_pred             HHHHhCCcCChhHceEEEEEEecccc-Cccchheeeeecch
Confidence            99999999865444444444443332 45778888888763

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=95.68  E-value=0.0062  Score=43.28  Aligned_cols=32  Identities=22%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      +.++|||+||+. .+.....+..|.  .|+...|-
T Consensus        18 ~~~~fCP~Cg~~-~m~~~~~r~~C~--~Cgyt~~~   49 (50)
T PRK00432         18 RKNKFCPRCGSG-FMAEHLDRWHCG--KCGYTEFK   49 (50)
T ss_pred             EccCcCcCCCcc-hheccCCcEECC--CcCCEEec
Confidence            568899999996 555555788997  79998874

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=95.47  E-value=0.0074  Score=42.54  Aligned_cols=34  Identities=21%  Similarity=0.533  Sum_probs=28.9

Q ss_pred             hccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          183 HNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       183 ~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      -+.++|||+||.-+.+.+-..+..|.  .|+...|-
T Consensus        16 ~rk~~~CPrCG~gvfmA~H~dR~~CG--kCgyTe~~   49 (51)
T COG1998          16 KRKNRFCPRCGPGVFMADHKDRWACG--KCGYTEFK   49 (51)
T ss_pred             EEccccCCCCCCcchhhhcCceeEec--cccceEee
Confidence            35789999999988888888899997  79988764

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.29  E-value=0.0071  Score=37.82  Aligned_cols=26  Identities=35%  Similarity=0.710  Sum_probs=16.8

Q ss_pred             CCCCCCCCCeeccCCccccccCC-CCC
Q 020612          188 FCGHCGEKTIPKEAGKLKQCSNA-SCK  213 (323)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~-~C~  213 (323)
                      +||.||+++...+++-..+|+|+ .|.
T Consensus         1 ~CP~C~s~l~~~~~ev~~~C~N~l~Cp   27 (28)
T PF03119_consen    1 TCPVCGSKLVREEGEVDIRCPNPLSCP   27 (28)
T ss_dssp             B-TTT--BEEE-CCTTCEEE--CGC-H
T ss_pred             CcCCCCCEeEcCCCCEeEECCCCCcCC
Confidence            69999999999999999999987 663

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=95.01  E-value=0.0034  Score=60.50  Aligned_cols=63  Identities=30%  Similarity=0.392  Sum_probs=53.7

Q ss_pred             cccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG  279 (323)
Q Consensus       215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~  279 (323)
                      ..|-...|+....+.+....++||++...  ...|++|-|++...|+--+++.|||.||||.+..
T Consensus        76 ~~yk~~iPv~ga~ild~~~sr~llv~g~q--a~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   76 APYKARIPVRGAIILDEKRSRCLLVKGWQ--ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             ccccCCCCCchHhhhhhhhhhhheeecee--cccccccCccccccchhhhcchhcccchhhcCHH
Confidence            34555678888888888778999998865  4569999999999999999999999999999763

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=94.55  E-value=0.05  Score=38.13  Aligned_cols=31  Identities=32%  Similarity=0.668  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCeeccCC--ccccccCCCCCCcccCC
Q 020612          187 RFCGHCGEKTIPKEAG--KLKQCSNASCKKRIYPR  219 (323)
Q Consensus       187 ~fC~~CG~~~~~~~~g--~~~~C~~~~C~~~~ypr  219 (323)
                      +|||.||.-+...+..  ....|+  .|+..++-.
T Consensus         1 ~FCp~Cg~~l~~~~~~~~~~~vC~--~Cg~~~~~~   33 (52)
T smart00661        1 KFCPKCGNMLIPKEGKEKRRFVCR--KCGYEEPIE   33 (52)
T ss_pred             CCCCCCCCccccccCCCCCEEECC--cCCCeEECC
Confidence            5999999998776543  367897  799877643

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=94.05  E-value=0.46  Score=41.91  Aligned_cols=57  Identities=26%  Similarity=0.350  Sum_probs=41.1

Q ss_pred             CCeEEEEeeccC-----CCCcccc-eeeecCCCC---CHHHH----HHHHHHHHhCCe---eccEEEEEEeec
Q 020612          233 NDRVLLSRQSRF-----VPRMWSC-IAGFIEPGE---SLEEA----VRRETWEETGIE---VGEVVYHTSQPW  289 (323)
Q Consensus       233 ~~riLL~rr~~~-----~~g~w~l-PgG~VE~GE---s~eeA----a~REv~EEtGL~---v~~v~~~gs~~~  289 (323)
                      .++||+..|-.-     -.+.+++ .||++..++   +.++-    +.||+.||+++.   ...+.|+|-..-
T Consensus        71 edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINd  143 (203)
T COG4112          71 EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLIND  143 (203)
T ss_pred             CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecC
Confidence            579999888631     1356776 699998664   33433    679999999997   567788887653

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=92.32  E-value=0.05  Score=35.71  Aligned_cols=29  Identities=34%  Similarity=0.792  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCCeeccCCccc-cccCCCCCCcc
Q 020612          186 SRFCGHCGEKTIPKEAGKLK-QCSNASCKKRI  216 (323)
Q Consensus       186 ~~fC~~CG~~~~~~~~g~~~-~C~~~~C~~~~  216 (323)
                      .+|||.||.-+...++.... .|.  .|+..+
T Consensus         1 m~FCp~C~nlL~p~~~~~~~~~C~--~C~Y~~   30 (35)
T PF02150_consen    1 MRFCPECGNLLYPKEDKEKRVACR--TCGYEE   30 (35)
T ss_dssp             --BETTTTSBEEEEEETTTTEEES--SSS-EE
T ss_pred             CeeCCCCCccceEcCCCccCcCCC--CCCCcc
Confidence            37999999999887665444 586  688654

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=92.23  E-value=0.31  Score=43.93  Aligned_cols=41  Identities=27%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE  277 (323)
Q Consensus       234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~  277 (323)
                      -.|||.|..   ...|.+|||.+.+||+.++..+|.+.+-.|..
T Consensus        58 PHvLLLq~~---~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   58 PHVLLLQIG---NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEEEET---TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             cEEEEEecc---CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            468888865   34899999999999999999999999999875

...

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.63  E-value=0.3  Score=44.36  Aligned_cols=101  Identities=16%  Similarity=0.309  Sum_probs=60.8

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCccc-----c----eeeecC-CCCCHHHHHHHHHHHHhCCee-----ccEE
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWS-----C----IAGFIE-PGESLEEAVRRETWEETGIEV-----GEVV  282 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~-----l----PgG~VE-~GEs~eeAa~REv~EEtGL~v-----~~v~  282 (323)
                      .-+..|++++. .+++||++|+.   ..++.|.     -    |+.--+ .+..+..||+|-++-|+||..     +.++
T Consensus        52 HRaFSVFlFns-~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~  130 (225)
T KOG0142|consen   52 HRAFSVFLFNS-KNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFN  130 (225)
T ss_pred             hheeeEEEecC-cchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcc
Confidence            44667888886 58999999874   3467774     1    222211 234678899999999999964     3567


Q ss_pred             EEEEeecCCCCCCCCeeEEEEEEEEe-eccCCCCCcccccC
Q 020612          283 YHTSQPWPVGPNSMPCQLMVGFYAYA-KSFEINVDKEELEG  322 (323)
Q Consensus       283 ~~gs~~~~~~~~~~~~~lmi~f~a~~-~~~~i~~d~~Eied  322 (323)
                      |++.+.|-...++.-..--+-|+... ..-.+.++++|+.+
T Consensus       131 ~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e  171 (225)
T KOG0142|consen  131 FLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSE  171 (225)
T ss_pred             cceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhH
Confidence            88877665433332111112222222 23455666688764

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=89.30  E-value=0.21  Score=29.72  Aligned_cols=22  Identities=27%  Similarity=0.815  Sum_probs=15.3

Q ss_pred             CCCCCCCCCeeccCCccccccCCCCCCc
Q 020612          188 FCGHCGEKTIPKEAGKLKQCSNASCKKR  215 (323)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~  215 (323)
                      ||++||+++..    ..+.|+  .||..
T Consensus         1 ~Cp~CG~~~~~----~~~fC~--~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIED----DAKFCP--NCGTP   22 (23)
T ss_pred             CCcccCCCCCC----cCcchh--hhCCc
Confidence            78999988853    245686  57753

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=88.69  E-value=0.18  Score=30.79  Aligned_cols=12  Identities=42%  Similarity=1.082  Sum_probs=6.7

Q ss_pred             cCCCCCCCCCCC
Q 020612          185 VSRFCGHCGEKT  196 (323)
Q Consensus       185 ~~~fC~~CG~~~  196 (323)
                      ..+||+.||+++
T Consensus        15 ~~~fC~~CG~~L   26 (26)
T PF13248_consen   15 DAKFCPNCGAKL   26 (26)
T ss_pred             ccccChhhCCCC
Confidence            355666666553

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=88.13  E-value=1.3  Score=41.56  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             EEEEeCCCC--eEEEEeecc---CCCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCee---ccEEEEEEeec
Q 020612          226 MLVIDREND--RVLLSRQSR---FVPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEV---GEVVYHTSQPW  289 (323)
Q Consensus       226 vlV~~~~~~--riLL~rr~~---~~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v---~~v~~~gs~~~  289 (323)
                      +.|.++.-+  +|-+.||+.   -++|+|+ +.||.+-.|-.+.++++.|..||+.|..   .++...|+..|
T Consensus       138 gYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy  210 (306)
T KOG4313|consen  138 GYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSY  210 (306)
T ss_pred             eeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEE
Confidence            344554434  566777764   4688886 7899999999999999999999999975   34444444333

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=87.16  E-value=1.5  Score=42.32  Aligned_cols=84  Identities=23%  Similarity=0.242  Sum_probs=53.5

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCC----------CC-------------------cccceeeecCCCCCHHHHHHHHHHHH
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFV----------PR-------------------MWSCIAGFIEPGESLEEAVRRETWEE  273 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~----------~g-------------------~w~lPgG~VE~GEs~eeAa~REv~EE  273 (323)
                      .|.++++|....+++|+|+.|++          +|                   ..++.+|.|+..-+..+-+.||.+||
T Consensus       231 Svt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~vee  310 (405)
T KOG4432|consen  231 SVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEE  310 (405)
T ss_pred             ceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHH
Confidence            34555566556677777776421          11                   23466899998899999999999999


Q ss_pred             hCCee--ccEEEEEEeecCCCCCCCCeeEEEEEEEEee
Q 020612          274 TGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK  309 (323)
Q Consensus       274 tGL~v--~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~  309 (323)
                      .|+++  +.++.+..+.-..+.++ ..+.|  |++++.
T Consensus       311 cGYdlp~~~~k~va~y~sGVG~SG-~~QTm--fy~eVT  345 (405)
T KOG4432|consen  311 CGYDLPEDSFKLVAKYISGVGQSG-DTQTM--FYVEVT  345 (405)
T ss_pred             hCCCCCHHHHhhhheeecccCCcC-CeeEE--EEEEee
Confidence            99986  45555555433344444 22333  455554

>PF12773 DZR: Double zinc ribbon

Probab=86.45  E-value=0.48  Score=32.91  Aligned_cols=32  Identities=28%  Similarity=0.639  Sum_probs=23.8

Q ss_pred             ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      ...+||+.||.++. ........|+  .|+....+
T Consensus        10 ~~~~fC~~CG~~l~-~~~~~~~~C~--~Cg~~~~~   41 (50)
T PF12773_consen   10 DDAKFCPHCGTPLP-PPDQSKKICP--NCGAENPP   41 (50)
T ss_pred             ccccCChhhcCChh-hccCCCCCCc--CCcCCCcC
Confidence            45789999999998 4445567887  69887544

>PRK13844 recombination protein RecR; Provisional

Probab=86.27  E-value=0.65  Score=42.28  Aligned_cols=91  Identities=15%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612          171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS  250 (323)
Q Consensus       171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~  250 (323)
                      .+-..|.+|..-+.+.++|+.||.-+..      ..|+  -|....   -+..++++|-+.  .-++-..+...+.|.|-
T Consensus        42 ~~~~la~~i~~~~~~i~~C~~C~~lte~------~~C~--IC~d~~---Rd~~~iCVVE~~--~Dv~aiE~t~~y~G~Yh  108 (200)
T PRK13844         42 TAIAIANSLLDATANIKKCVYCQALTED------DVCN--ICSNTN---RDDTKLCIIESM--LDMIAIEEAGIYRGKYF  108 (200)
T ss_pred             HHHHHHHHHHHHHHhCCcCCCCCCCCCC------CCCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCccceEEE
Confidence            3455689999999999999999988752      2454  454433   244456666553  33555566667789999


Q ss_pred             ceeeecCC--CCCHHHHHHHHHHHHh
Q 020612          251 CIAGFIEP--GESLEEAVRRETWEET  274 (323)
Q Consensus       251 lPgG~VE~--GEs~eeAa~REv~EEt  274 (323)
                      +.+|.+.|  |..+++--..++.+-.
T Consensus       109 VL~G~ispl~gi~p~~l~i~~L~~Ri  134 (200)
T PRK13844        109 VLNGRISPLDGIGPSELKLDILQQII  134 (200)
T ss_pred             EccCccCccCCCChhhcCHHHHHHHH
Confidence            99999986  6677777777776654

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=85.73  E-value=0.51  Score=34.97  Aligned_cols=34  Identities=24%  Similarity=0.585  Sum_probs=27.9

Q ss_pred             HhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612          180 LEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRI  216 (323)
Q Consensus       180 ~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~  216 (323)
                      -.|+ +.+-||.||........+....|+  .||...
T Consensus        23 ~~~~-TSq~C~~CG~~~~~~~~~r~~~C~--~Cg~~~   56 (69)
T PF07282_consen   23 DEAY-TSQTCPRCGHRNKKRRSGRVFTCP--NCGFEM   56 (69)
T ss_pred             CCCC-CccCccCcccccccccccceEEcC--CCCCEE
Confidence            3455 899999999999987778888997  698763

More information about these proteins can be found at Protein of the Month: Transposase [].

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=85.30  E-value=0.52  Score=32.80  Aligned_cols=29  Identities=31%  Similarity=0.682  Sum_probs=20.1

Q ss_pred             CCCCCCCCCeeccC------C--ccccccCCCCCCcc
Q 020612          188 FCGHCGEKTIPKEA------G--KLKQCSNASCKKRI  216 (323)
Q Consensus       188 fC~~CG~~~~~~~~------g--~~~~C~~~~C~~~~  216 (323)
                      +||.||++......      .  .--+|.|+.||..+
T Consensus         1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~~Cg~tf   37 (47)
T PF04606_consen    1 RCPHCGSKARIRTSRQLSPLTRELYCQCTNPECGHTF   37 (47)
T ss_pred             CcCCCCCeeEEEEchhhCcceEEEEEEECCCcCCCEE
Confidence            59999999865421      1  22278888898765

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>TIGR00615 recR recombination protein RecR

Probab=83.88  E-value=0.99  Score=40.98  Aligned_cols=91  Identities=24%  Similarity=0.365  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612          171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS  250 (323)
Q Consensus       171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~  250 (323)
                      .+...|.+|.+-+.+.++|..||.-+..      ..|+  -|....   -+...+++|-+.  .-++-..+...+.|.|-
T Consensus        38 ~~~~la~ai~~~~~~i~~C~~C~~lse~------~~C~--IC~d~~---Rd~~~iCVVE~~--~Dv~aiE~~~~y~G~Yh  104 (195)
T TIGR00615        38 EVLRLAQALLEAKENLRTCSVCGAISDQ------EVCN--ICSDER---RDNSVICVVEDP--KDVFALEKTKEFRGRYH  104 (195)
T ss_pred             HHHHHHHHHHHHHHcCCcCCCCCCCCCC------CcCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCccceEEE
Confidence            3455689999999999999999977642      2354  454432   344566666553  33555566666789999


Q ss_pred             ceeeecCC--CCCHHHHHHHHHHHHh
Q 020612          251 CIAGFIEP--GESLEEAVRRETWEET  274 (323)
Q Consensus       251 lPgG~VE~--GEs~eeAa~REv~EEt  274 (323)
                      +.+|.+.|  |..+++--..++.+-.
T Consensus       105 VL~G~iSPldgigp~~l~i~~L~~Ri  130 (195)
T TIGR00615       105 VLGGHISPLDGIGPEDLTIAALLKRL  130 (195)
T ss_pred             EccCccCccCCCChhhcCHHHHHHHH
Confidence            99999996  6677776666666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=83.11  E-value=1  Score=30.72  Aligned_cols=33  Identities=27%  Similarity=0.686  Sum_probs=24.8

Q ss_pred             HHHhhhccCCCCCCCCCCCeeccCCccccccCCCCC
Q 020612          178 ALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCK  213 (323)
Q Consensus       178 ~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~  213 (323)
                      -|-.|.-...+||.||.|+.....| +..|+  .|+
T Consensus         9 LL~G~~ML~~~Cp~C~~PL~~~k~g-~~~Cv--~C~   41 (41)
T PF06677_consen    9 LLQGWTMLDEHCPDCGTPLMRDKDG-KIYCV--SCG   41 (41)
T ss_pred             HHHhHhHhcCccCCCCCeeEEecCC-CEECC--CCC
Confidence            3445777889999999999885555 46887  574

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>PRK00076 recR recombination protein RecR; Reviewed

Probab=82.36  E-value=1.1  Score=40.68  Aligned_cols=91  Identities=23%  Similarity=0.352  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612          171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS  250 (323)
Q Consensus       171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~  250 (323)
                      .+...|++|.+-+.+.++|..||.-+..      ..|+  -|....   -+..++++|-+.  ..++-..+.+.+.|.|-
T Consensus        38 ~~~~la~~i~~~~~~i~~C~~C~~lse~------~~C~--IC~d~~---Rd~~~icVVE~~--~Dv~aiE~s~~y~G~Yh  104 (196)
T PRK00076         38 DVLRLAQALEEAKEKIKHCSVCGNLTEQ------DPCE--ICSDPR---RDQSLICVVESP--ADVLAIERTGEYRGLYH  104 (196)
T ss_pred             HHHHHHHHHHHHHHcCCcCCCCCCcCCC------CcCC--CCCCCC---CCCCEEEEECCH--HHHHHHHhhCcCceEEE
Confidence            3455689999999999999999987753      2454  454432   344566766553  34555666666789999


Q ss_pred             ceeeecCC--CCCHHHHHHHHHHHHh
Q 020612          251 CIAGFIEP--GESLEEAVRRETWEET  274 (323)
Q Consensus       251 lPgG~VE~--GEs~eeAa~REv~EEt  274 (323)
                      +.+|.+.|  |-.+++--..++.+-.
T Consensus       105 VL~G~ispl~gi~p~~l~i~~L~~ri  130 (196)
T PRK00076        105 VLGGLLSPLDGIGPEDLNIDELLERL  130 (196)
T ss_pred             EecCCcCCCCCCCccccCHHHHHHHH
Confidence            99999986  5566655555565555

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=82.05  E-value=1  Score=30.94  Aligned_cols=27  Identities=33%  Similarity=0.679  Sum_probs=21.7

Q ss_pred             CCCCCCCCCeeccCCccccccCCCCCCcc
Q 020612          188 FCGHCGEKTIPKEAGKLKQCSNASCKKRI  216 (323)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~  216 (323)
                      -|+.||..+..........||  .||...
T Consensus         5 ~C~~CG~~~~~~~~~~~~~Cp--~CG~~~   31 (46)
T PRK00398          5 KCARCGREVELDEYGTGVRCP--YCGYRI   31 (46)
T ss_pred             ECCCCCCEEEECCCCCceECC--CCCCeE
Confidence            499999998877666578997  798754

>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]

Probab=81.77  E-value=1.4  Score=39.96  Aligned_cols=92  Identities=22%  Similarity=0.381  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCccc
Q 020612          171 AIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWS  250 (323)
Q Consensus       171 ~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~  250 (323)
                      .+-..|.+|.+-.+..++|+.||.-+...      .|.  -|....   -+..++++|-.+  .-++...+.+...|.|-
T Consensus        39 ~~~~la~al~~a~~~i~~C~~C~~~te~d------~C~--ICsd~~---Rd~~~icVVe~p--~Dv~a~E~~~~f~G~Yh  105 (198)
T COG0353          39 DVERLAKALLEAKENIKHCSVCGNLTESD------PCD--ICSDES---RDKSQLCVVEEP--KDVLALEKTGEFRGLYH  105 (198)
T ss_pred             HHHHHHHHHHHHHhcCccccccCCcCCCC------cCc--CcCCcc---cCCceEEEEcch--HHHHHHHHhcccCeeEE
Confidence            45556899999999999999999877543      454  454332   344567777654  23444455556689999


Q ss_pred             ceeeecCC--CCCHHHHHHHHHHHHhC
Q 020612          251 CIAGFIEP--GESLEEAVRRETWEETG  275 (323)
Q Consensus       251 lPgG~VE~--GEs~eeAa~REv~EEtG  275 (323)
                      +.+|.+.|  |-.+++--.+++.+-..
T Consensus       106 VL~G~lspl~gigpe~l~i~~L~~Rl~  132 (198)
T COG0353         106 VLGGLLSPLDGIGPEDLNIDELLQRLA  132 (198)
T ss_pred             EecCccCcccCCCcccccHHHHHHHHh
Confidence            99999996  55777777777766543

>PRK00420 hypothetical protein; Validated

Probab=81.65  E-value=1.3  Score=36.75  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             cCCCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612          185 VSRFCGHCGEKTIPKEAGKLKQCSNASCKKR  215 (323)
Q Consensus       185 ~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~  215 (323)
                      ....||.||.++.....| ..+||  .|+..
T Consensus        22 l~~~CP~Cg~pLf~lk~g-~~~Cp--~Cg~~   49 (112)
T PRK00420         22 LSKHCPVCGLPLFELKDG-EVVCP--VHGKV   49 (112)
T ss_pred             ccCCCCCCCCcceecCCC-ceECC--CCCCe
Confidence            459999999999875444 56787  68873

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=81.58  E-value=3.6  Score=36.63  Aligned_cols=49  Identities=22%  Similarity=0.334  Sum_probs=37.3

Q ss_pred             EEEEEeCC-CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCC
Q 020612          225 IMLVIDRE-NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI  276 (323)
Q Consensus       225 ivlV~~~~-~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL  276 (323)
                      .++|+.+. --+|||.+-.   .-.+-+|||.+++||+-.+.++|-+-|-+|-
T Consensus        74 gvlivheH~lPHvLLLQig---~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   74 GVLIVHEHNLPHVLLLQIG---NTFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             eeEEEeecCCCeEEEEeeC---CEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            34444432 2467777654   3468899999999999999999999999993

>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

Probab=81.11  E-value=0.93  Score=37.55  Aligned_cols=29  Identities=34%  Similarity=0.738  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCCeecc--CCccccccCCCCCCcc
Q 020612          186 SRFCGHCGEKTIPKE--AGKLKQCSNASCKKRI  216 (323)
Q Consensus       186 ~~fC~~CG~~~~~~~--~g~~~~C~~~~C~~~~  216 (323)
                      .+|||.||+-|.+..  .+....|.  .|+...
T Consensus         2 m~FCp~Cgsll~p~~~~~~~~l~C~--kCgye~   32 (113)
T COG1594           2 MRFCPKCGSLLYPKKDDEGGKLVCR--KCGYEE   32 (113)
T ss_pred             ccccCCccCeeEEeEcCCCcEEECC--CCCcch
Confidence            689999999999865  45588997  798764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
2gb5_A	269	Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1		4e-22
1vk6_A	269	Crystal Structure Of Nadh Pyrophosphatase (1790429)		4e-22
3smd_A	153	Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM		5e-05
2o1c_A	150	Structure Of The E. Coli Dihydroneopterin Triphosph		2e-04

>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22) (1790429) From Escherichia Coli K12 At 2.30 A Resolution Length = 269

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 9/151 (5%)
Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229
             +AG    L E++   ++CG+CG +  P +      CS+  C++R YP++ P +I+ + 
Sbjct: 91  FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147
Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
            R +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V  + Y TSQPW
Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206
Query: 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
           P      P  L   F A   S +I +D +EL
Sbjct: 207 P-----FPQSLXTAFXAEYDSGDIVIDPKEL 232

>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From Escherichia Coli K12 At 2.20 A Resolution Length = 269

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 9/151 (5%)
Query: 170 LAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVI 229
             +AG    L E++   ++CG+CG +  P +      CS+  C++R YP++ P +I+ + 
Sbjct: 91  FQLAGRGVQLAEFYRSHKYCGYCGHEXYPSKTEWAXLCSH--CRERYYPQIAPCIIVAI- 147
Query: 230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW 289
            R +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V  + Y TSQPW
Sbjct: 148 -RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGIKVKNLRYVTSQPW 206
Query: 290 PVGPNSMPCQLMVGFYAYAKSFEINVDKEEL 320
           P      P  L   F A   S +I +D +EL
Sbjct: 207 P-----FPQSLXTAFXAEYDSGDIVIDPKEL 232

>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM BACILLUS Thuringiensis Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +  VI  E   +L           WS  AG IEPGE+ EEAV RE WEETG++V
Sbjct: 24  VAAVIKNEQGELLFQYPGG---EYWSLPAGAIEPGETPEEAVIREVWEETGLKV 74

>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate Pyrophosphohydrolase Length = 150

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           K ++Y R  PV I++VI  ++ + +L  Q R  P  W  + G +E GE+  +A  RE  E
Sbjct: 2   KDKVYKR--PVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKE 59
Query: 273 ETGIEV 278
           E  I+V
Sbjct: 60  EVTIDV 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	6e-77
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-43
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	3e-32
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	2e-27
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	2e-23
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-22
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	3e-20
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	4e-20
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	5e-19
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-17
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-16
3f13_A	163	Putative nudix hydrolase family member; structural	5e-16
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	6e-16
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-15
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	3e-15
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	3e-15
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	1e-14
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	1e-13
3grn_A	153	MUTT related protein; structural genomics, hydrola	8e-13
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	1e-12
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-12
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	3e-12
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	4e-12
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	6e-11
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	1e-10
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	1e-10
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	1e-10
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	2e-10
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-10
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	3e-10
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	4e-10
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	5e-10
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	8e-10
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	1e-09
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-09
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-09
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	3e-09
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	5e-09
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	1e-08
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-08
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	1e-08
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	6e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	7e-08
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	1e-07
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	2e-07
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-07
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	2e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	4e-07
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	9e-07
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	9e-07
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	9e-07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	1e-06
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	1e-06
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	1e-06
2fb1_A	226	Conserved hypothetical protein; structural genomic	1e-06
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-06
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	4e-06
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	4e-06
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	4e-06
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-05
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	5e-05
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	8e-05
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	1e-04
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	2e-04
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	6e-04

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score =  235 bits (602), Expect = 6e-77
 Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 92  WISLGDCKIFLAN--------SGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASEFG 143
           W+   + K++L          +  +L  +  + +G         W +             
Sbjct: 25  WVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEW--QGEPVWLVQQQRRHD------ 76

Query: 144 SKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGK 203
                   +R V+               +AG    L E++   ++CG+CG +  P +   
Sbjct: 77  -----MGSVRQVIDLDV-------GLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEW 124

Query: 204 LKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLE 263
              CS+  C++R YP++ P +I+ +    +D +LL++ +R    + + +AGF+E GE+LE
Sbjct: 125 AMLCSH--CRERYYPQIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLE 180

Query: 264 EAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           +AV RE  EE+GI+V  + Y TSQPWP      P  LM  F A   S +I +D +EL 
Sbjct: 181 QAVAREVMEESGIKVKNLRYVTSQPWP-----FPQSLMTAFMAEYDSGDIVIDPKELL 233

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score =  147 bits (372), Expect = 1e-43
 Identities = 34/137 (24%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 187 RFCGHCGEKTIPK--EAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF 244
           +FC  CG + I +  E   L +     C    Y     +V  +    EN  +L  R    
Sbjct: 4   KFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPE-WENKVLLCKRAIAP 62

Query: 245 VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF 304
               W+  AGF+E  E+L +   RET EE    V     +     P        Q+ + F
Sbjct: 63  YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP-----HISQVYMLF 117

Query: 305 YAYAKSFEINVDKEELE 321
            A     +     E LE
Sbjct: 118 RAKLLDLDFFPGIESLE 134

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score =  117 bits (294), Expect = 3e-32
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 9/118 (7%)

Query: 207 CSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAV 266
           C     ++     +  V +  ++  E+++VLL +Q +   R WS   G +E GE+LEEA+
Sbjct: 8   CKFNRKRRLYIENIMQVRVTGIL-IEDEKVLLVKQ-KVANRDWSLPGGRVENGETLEEAM 65

Query: 267 RRETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEG 322
            RE  EETG+EV   +++Y   +P        P  L + F       EI +   E + 
Sbjct: 66  IREMREETGLEVKIKKLLYVCDKPDAS-----PSLLHITFLLERIEGEITLPSNEFDH 118

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score =  104 bits (260), Expect = 2e-27
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-----MWSCIAGFIEPGESLEEA 265
             ++   P       +++++ E   +LL ++           +W   +G +E GE+ ++A
Sbjct: 3   HDERTHVPVELRAAGVVLLN-ERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDA 61

Query: 266 VRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAY 307
             RE  EETG+ V  V +  +          P  +++  + +
Sbjct: 62  AVREACEETGLRVRPVKFLGAYLGR-----FPDGVLILRHVW 98

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 94.6 bits (235), Expect = 2e-23
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 9/110 (8%)

Query: 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
                  V   V D    ++L+ +    +  MW    G  EP E + +   RE +EETGI
Sbjct: 22  SMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGI 81

Query: 277 EVGE-----VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           +        +    + P   G       + +       SF IN  +EE  
Sbjct: 82  KSEFRSVLSIRQQHTNPGAFG----KSDMYIICRLKPYSFTINFCQEECL 127

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
                 V +  VI++++  +L+    R      +  AG +EPGES+ +A  RE  EETG 
Sbjct: 3   MTWKPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGH 62

Query: 277 EVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
                V      W    N     L   F     SF+ +   + 
Sbjct: 63  SFLPEVLTGIYHWTCASNGTT-YLRFTFSGQVVSFDPDRKLDT 104

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 86.4 bits (214), Expect = 3e-20
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 14/173 (8%)

Query: 156 MVATDWADQ-RAMADLAIAGHARALLEWHNVSRF--CGHCGEKTIPKEAGK-LKQCSNAS 211
           M    W +    +  LA  G A    + +++ RF        + + + +G+ L+   +  
Sbjct: 2   MSQDKWLEWAVRLQALAQTGLAYGK-DVYDMERFEEIRQIAAEMLVEPSGQPLEVVKDLF 60

Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
           C +  Y    P +       + D++LL +++     +WS   G+ +  +S+++ V +E  
Sbjct: 61  CNETGYQT--PKLDTRAAIFQEDKILLVQEND---GLWSLPGGWCDVDQSVKDNVVKEVK 115

Query: 272 EETGIEV--GEVVYHTSQPWPVGPNSMPCQ-LMVGFYAYAKSFEINVDKEELE 321
           EE G++V    VV    +     P     +   V         E   + E + 
Sbjct: 116 EEAGLDVEAQRVVAILDKHK-NNPAKSAHRVTKVFILCRLLGGEFQPNSETVA 167

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 81.3 bits (201), Expect = 5e-19
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           P V +  +     + L+  ++     +W+  AG +E  E+L EA  RE WEETGI     
Sbjct: 4   PHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYA 308
            +     W     +    L   F    
Sbjct: 64  HFIRMHQWIAPDKT--PFLRFLFAIEL 88

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             I L+ D E  RV++  ++    R   ++   G +E  E+  E+V RE +EETG+ +  
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYA 306
                 + WP+        +++ + A
Sbjct: 70  PQLVGIKNWPLDTG--GRYIVICYKA 93

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
            R+   V  VV+ + +  + D VLL     R     W   AG +EPGE++ EA++RE  E
Sbjct: 13  VRLRKNVCYVVLAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKE 71

Query: 273 ETGIEV 278
           E G+  
Sbjct: 72  EAGLHC 77

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 73.4 bits (180), Expect = 5e-16
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           +K      D       I    D VL++         ++   G    GE   +A+ RE  E
Sbjct: 6   RKNERLPSDLARRATAIIEMPDGVLVTASRG---GRYNLPGGKANRGELRSQALIREIRE 62

Query: 273 ETGIEVGEVVYHTSQPWP 290
           ETG+ +  ++Y      P
Sbjct: 63  ETGLRINSMLYLFDHITP 80

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 74.4 bits (183), Expect = 6e-16
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
             +  Y      +  +V    N+++L  ++       W+   G+ + G +  E   +E +
Sbjct: 59  ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVF 114

Query: 272 EETGIEV--GEVVYHTSQPWPVGPNSMPCQ-LMVGFYAYAKSFEINVDKEELE 321
           EETG EV   +++    +     P+        +         E     E  E
Sbjct: 115 EETGYEVDHFKLLAIFDKE-KHQPSPSATHVYKIFIGCEIIGGEKKTSIETEE 166

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 217 YPRVDPVVIM---LVIDRENDRVLL-SRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
             R  PV ++   +V D E  RVL+  + +       S   G +E GE    A  RE +E
Sbjct: 3   LTRTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFE 62

Query: 273 ETGIEV 278
           ETG+ +
Sbjct: 63  ETGLRL 68

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRM--WSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
            V   +V+D  +D+VLL +  +  PR   W    G +E GES+ E V+RE WEETGI V 
Sbjct: 5   RVTNCIVVD--HDQVLLLQ--K--PRRGWWVAPGGKMEAGESILETVKREYWEETGITVK 58

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEG 322
                      +          + F   A   E  + K+  EG
Sbjct: 59  NPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEG 101

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 216 IYPR----VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETW 271
                    D V+I L        ++L  + ++ P   +   GF+E GE +EEA  RE  
Sbjct: 4   NVKTPLLATD-VIIRLWDGENFKGIVLIER-KYPPVGLALPGGFVEVGERVEEAAAREMR 61

Query: 272 EETGIEV 278
           EETG+EV
Sbjct: 62  EETGLEV 68

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 222 PVVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             +  LV+  +  RVLL  ++  F    W+   G ++ GE++E+  RRE  EE+G+ V  
Sbjct: 24  SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDA 83

Query: 281 VVYHTSQPWP 290
           +       + 
Sbjct: 84  LHKVGQIVFE 93

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 202 GKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGE 260
           G L+  +      +   +        ++   + R+LL  R+       W    G ++  E
Sbjct: 10  GTLEAQTQGPGSMQHTEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLE 67

Query: 261 SLEEAVRRETWEETGIEV 278
            +E AV RE  EE GI +
Sbjct: 68  PVERAVCREIEEELGIAL 85

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 223 VVIMLVIDRENDRVLLSR---QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           + +  +I  E    LL R    SR     W    G + P ESL+E V RE WEETGI +
Sbjct: 9   ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITM 67

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 208 SNASCKKRIYPRVDPVVIML---VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEE 264
           SNA  ++    +VD  V  +    +  +N ++L+++        +  I G I+  ES E+
Sbjct: 1   SNAMTQQDFRTKVDNTVFGVRATALIVQNHKLLVTKD----KGKYYTIGGAIQVNESTED 56

Query: 265 AVRRETWEETGIEV 278
           AV RE  EE G++ 
Sbjct: 57  AVVREVKEELGVKA 70

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 222 PVVIMLVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
             ++  +I  +    LL + +      P  W+   G +EPGE +EEA+RRE  EE G ++
Sbjct: 28  RTIVCPLIQNDG-CYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 86

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 223 VVIMLVIDRENDRVLLS-RQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE- 280
           V +  +++      LL  R +R     W    G ++  E+LE A  R T  E G+ +   
Sbjct: 19  VSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPIT 78

Query: 281 ------VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEG 322
                 V  H       G +     +++GF       E+ +  E+ + 
Sbjct: 79  AGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDD 126

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRF-------VPRMWSCIAGFIEPGESLEEAVRRETWEET 274
              ++L  D   D V+L  Q R         P +   +AG IE GES+E+  RRE  EE 
Sbjct: 58  HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEA 117

Query: 275 GIEVGEVV----YHTS 286
           G+ V        +  S
Sbjct: 118 GLIVKRTKPVLSFLAS 133

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 228 VIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++ +  +  ++  Q+   P   +    G IE  E+ EEA+ RE  EE GI V
Sbjct: 24  IVSKPENNTMVLVQA---PNGAYFLPGGEIEGTETKEEAIHREVLEELGISV 72

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +++   +  EN +VLL +  R    ++    G +E  E+  EAV+RE  EETGI V
Sbjct: 1   MIVTSGVLVENGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVV 54

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 60.8 bits (147), Expect = 1e-10
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 150 VELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSN 209
           V+      AT++  +     ++         +    +        +       +      
Sbjct: 135 VDNYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIE 194

Query: 210 ASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVR 267
                   P     V +  +   ND +L+ ++ +  P   +W+   GF+E  E++ +A+ 
Sbjct: 195 YKRLWLKAPFKPNFVTVDALVIVNDHILMVQR-KAHPGKDLWALPGGFLECDETIAQAII 253

Query: 268 RETWEETGIEVGEVVYHTSQP 288
           RE +EET I +       ++ 
Sbjct: 254 RELFEETNINLTHEQLAIAKR 274

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEE 273
               +L+ + +   V+L RQ R           ++    AG ++  E  E  +R+E  EE
Sbjct: 46  NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEP-EVCIRKEAIEE 104

Query: 274 TGIEVGEVV----YHTS 286
           TG EVGEV      + S
Sbjct: 105 TGYEVGEVRKLFELYMS 121

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           KK I     PV    + +    ++LL + +      WS   G I   E+  +   RE  E
Sbjct: 1   KKSI-----PVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKE 53

Query: 273 ETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKE 318
           E G ++ + +                  ++   +   +F+  V  E
Sbjct: 54  EIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNE 99

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           VI  +    N +  +  ++     +W  +AG  E  E++ E  +RE+ EE  ++V   +Y
Sbjct: 10  VIPFIKTEANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMY 67

Query: 284 -----HTSQPWPVGPNSMPCQLMVGFYAYAKSF--EINVDKEELE 321
                 +   +    N         F     S   ++ +  E  E
Sbjct: 68  SLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSE 112

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 17/96 (17%)

Query: 210 ASCKKRIYPR-----VDPVV--IMLVIDRENDRVLLSR--------QSRFVPRMWSCIAG 254
            +   + +        D ++  +  +  +    +LL +        +       W+   G
Sbjct: 15  KNYNAKEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGG 74

Query: 255 FIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQP 288
           F++  ES E+A  RE  EET +            +P
Sbjct: 75  FVDENESAEQAAERELEEETSLTDIPLIPFGVFDKP 110

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 13/143 (9%)

Query: 145 KQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKL 204
                  +R         D       AIA + +    +    R+   C E          
Sbjct: 137 PDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQ---TFQKSERYIALCDEYQFL------ 187

Query: 205 KQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLE 263
            Q    +     Y         +V+  +   VL+ R+       + +   GFI+  E+L 
Sbjct: 188 -QAYKQAWATAPYAPTFITTDAVVV--QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLV 244

Query: 264 EAVRRETWEETGIEVGEVVYHTS 286
           E + RE  EET ++V   V   S
Sbjct: 245 EGMLRELKEETRLKVPLPVLRGS 267

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 217 YPR----VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRET 270
           Y +    VD V++    + +  +VLL ++    P    W+   GF+   ES E++V RET
Sbjct: 35  YEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRET 93

Query: 271 WEETGIEV 278
            EETG+ +
Sbjct: 94  KEETGVVI 101

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI--EVGEVVYHT 285
           V+      VLL R        W    G  EPGESLEEA  RE WEETG+  EV   +Y T
Sbjct: 8   VVFNAKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT 64

Query: 286 SQPWPVG 292
               P G
Sbjct: 65  RYVNPKG 71

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286
             +D      LL + S      W+   G +EPGE   E   R T EE GIE G++     
Sbjct: 22  PKVDNNAIEFLLLQASDG-IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEG 80

Query: 287 QPWPVGPNSMPCQLMVGFY-AYAKSFEINVDKEE 319
               +   +      V ++ A  K +++ +    
Sbjct: 81  FKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH 114

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET 274
             Y    PV   +++D    + +L  +       W    G I+  ES  +   RE +EET
Sbjct: 95  LRYKTRIPVRGAIMLDMSMQQCVLV-KGWKASSGWGFPKGKIDKDESDVDCAIREVYEET 153

Query: 275 GIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS----FEINVDKE 318
           G +    +     P      ++  Q +  +     S    FE    KE
Sbjct: 154 GFDCSSRI----NPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKE 197

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 227 LVIDREND---RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY 283
           LVI R+       LL  Q+ + P  W+   G ++PGE   +A  RET EE  I   ++  
Sbjct: 8   LVIYRKLAGKIEFLL-LQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI 66

Query: 284 H 284
           H
Sbjct: 67  H 67

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 54.3 bits (130), Expect = 5e-09
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRET 270
             +             L    E++  +L   S   P  W    G +EP E    A  RE 
Sbjct: 30  QTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREV 89

Query: 271 WEETGI--EVGEVVYHTSQPWP 290
            EE G+   +G +V        
Sbjct: 90  CEEAGVKGTLGRLVGIFENQER 111

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
            ++ +  D+VLL    +   +    + G IE  E  EEA  RE  EE G+ V
Sbjct: 12  FIVCK--DKVLLHLHKKA--KKMLPLGGHIEVNELPEEACIREAKEEAGLNV 59

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
           K ++Y R  PV I++VI  ++ + +L  Q R  P  W  + G +E GE+  +A  RE  E
Sbjct: 2   KDKVYKR--PVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKE 59

Query: 273 ETGIEVGEVVYH 284
           E  I+V      
Sbjct: 60  EVTIDVVAEQLT 71

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 227 LVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS 286
             +++E ++ L+   +      W+   G  +  +   +   +E  EETG++         
Sbjct: 51  FAVNKERNKFLMIHHNI--YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKN--PTPLLD 106

Query: 287 QPWPVGPNSMPCQLMVGFY 305
           + + +   ++   +  G Y
Sbjct: 107 KAFALDVLTVNGHIKRGKY 125

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETG 275
           PR    V +L +       +L RQ R+     +   +AG +E GE L  A  RE  EE G
Sbjct: 2   PRGPRAVFILPVT-AQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVG 60

Query: 276 IEVGEVVY 283
               E V 
Sbjct: 61  GAASEWVP 68

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 49.5 bits (119), Expect = 7e-08
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 228 VIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +I  EN+ + ++R      +        G IE GE+ E+AV RE  EE GI  
Sbjct: 10  IIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 213 KKRIYPRVD---PVVIMLVIDRENDRVLLSRQSRFVPRMWSC-I-AGFIEPGESLEEAVR 267
           ++  Y           +L +  E    LL RQ R     +   + AG ++ GE+ E A R
Sbjct: 30  RELTYVYRPGPVAASFVLPVT-ERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAAR 88

Query: 268 RETWEETGIEVGEVVY 283
           RE  EE G E   ++ 
Sbjct: 89  RELREEVGAEAETLIP 104

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 213 KKRIYPRVDPVVIMLVIDR--ENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRR 268
             R     D V ++ V+ R    + ++L +Q R           AG I+ GE+ E A  R
Sbjct: 54  TTRKEQTADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALR 113

Query: 269 ETWEETGIEVGEVVY 283
           E  EETG +      
Sbjct: 114 ELEEETGYKGDIAEC 128

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETW 271
           +R+ P     V+++ I   +D ++L R+              G I+PGES+ EA  RE  
Sbjct: 42  ERMRPTNREAVMIVPIV--DDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELK 99

Query: 272 EETG 275
           EE G
Sbjct: 100 EEVG 103

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETG 275
           V ++ +     R+L  RQ R           AG IEPGE   EA RRE  E+TG
Sbjct: 37  VAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTG 88

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 228 VIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +I+R+  ++LL++         +W    G +EP ES  +A+ RE  EE GIE 
Sbjct: 15  IIERDG-KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEA 66

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 223 VVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           VV   ++D++N RVLL++  + + +  +W    G +E GE+ E ++ RE  EE G+ V
Sbjct: 31  VVACALLDQDN-RVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHV 87

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVP--RMWSCIAGFIE-PGESLEEAVRRETWEETGIEV 278
             V ++ +D +N  + +  Q R     R+W   AG ++  GE       RE  EE G++ 
Sbjct: 44  GAVAIVAMD-DNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQA 102

Query: 279 GEVVY 283
                
Sbjct: 103 STWQV 107

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
                         ++  V +  + ++    WS   G +E  E+   A  RE  EETG  
Sbjct: 22  DPAIASSKSAQEQLDSIEVCIVHRPKY--DDWSWPKGKLEQNETHRHAAVREIGEETGSP 79

Query: 278 V 278
           V
Sbjct: 80  V 80

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 223 VVIMLVIDRENDRVLLSR--QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           V    +ID +  RVLL++    + +  +W    G +EPGE+ E A+ RE  EE G++ 
Sbjct: 10  VTAAALIDPDG-RVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGF-------IEPGESLEEAVRRETWEETGIEV 278
           VI    ++ L  +  R   +     +         +E GESL+EA++RE  EE    +
Sbjct: 12  VIRL-GEKYLCVQ--RGQTKFSY-TSFRYEFPGGKVEEGESLQEALQREIMEEMDYVI 65

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 213 KKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGF-------IEPGESLEEA 265
           K R    +  V     + ++  ++L+ +  R         AG        IE GE+ EEA
Sbjct: 15  KIRKGHWIPVVAG--FLRKDG-KILVGQ--RPENNSL---AGQWEFPGGKIENGETPEEA 66

Query: 266 VRRETWEETGIEV 278
           + RE  EE GIE 
Sbjct: 67  LARELNEELGIEA 79

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 217 YPR----VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRET 270
            P     +D ++     +     +LL +++   P    WS + GF++  ES+++A +R  
Sbjct: 9   NPTFYLGIDCII--FGFNEGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVL 65

Query: 271 WEETGIEV 278
            E TG+E 
Sbjct: 66  AELTGLEN 73

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSCIA-GFIEPGESLEEAVRRETWEETGIEVG 279
              +V+     ++L+ R++    F+P M    A G ++  E L E+ RRE  EE GI   
Sbjct: 39  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 98

Query: 280 EVVYHTS 286
               H  
Sbjct: 99  PFAEHGQ 105

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 210 ASCKKRIYPR----VDPVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEP--GESL 262
           A+   + +      VD V+       +  +VLL ++S      +W    GFI+    ESL
Sbjct: 11  ANYDPKAFKAQLLTVDAVL--FTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESL 68

Query: 263 EEAVRRETWEETGIEVG--EVVYHTSQPWP 290
           E+ V R+  E+T +     E +        
Sbjct: 69  EQTVLRKLAEKTAVVPPYIEQLCTVGNNSR 98

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 18/169 (10%)

Query: 165 RAMADLAIAGHARALL-----EWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPR 219
           RA+AD+        ++     E + V++  G      + +                 Y  
Sbjct: 69  RAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVG 128

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEV 278
               + + +  R       S      P    + +AG      SL + + +E  EE  +  
Sbjct: 129 AGADLHLWIGRR-------SPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPE 181

Query: 279 GEV-----VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELEG 322
                   V   +          P  L +   A  + F  +    E+  
Sbjct: 182 ALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMAD 230

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVG 279
           V+   +     ++ + R+S      P      + G ++ GE+ EEA RRE  EE  +E+ 
Sbjct: 36  VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEID 95

Query: 280 EV 281
            +
Sbjct: 96  AL 97

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 224 VIMLVIDRENDRVLLSRQSRFVPRMWSCIA---GFIEPGESLEEAVRRETWEETGIEVGE 280
           V++ +    + RVLL+ +S  +P     IA   G ++ GE+  +A  RE  EE  ++   
Sbjct: 38  VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA 97

Query: 281 V 281
           V
Sbjct: 98  V 98

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVG 279
                +     ++L++R++   +  P +W+  + G  + GES E+AV R    E G+E+ 
Sbjct: 34  AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT 93

Query: 280 EV 281
             
Sbjct: 94  PP 95

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 256 IEPGESLEEAVRRETWEETGIEVGEV 281
           I PGES E+A+ RE +EE G+   +V
Sbjct: 40  INPGESAEQAMYRELFEEVGLSRKDV 65

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 256 IEPGESLEEAVRRETWEETGIEVGEVVYHT 285
           I+ GE    A  RE  EETG+   EV+   
Sbjct: 47  IDEGEDPRNAAIRELREETGVTSAEVIAEV 76

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 254 GFIEPGE-SLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE 312
           GF++  + SLEE ++RE  EE G  +  V               P + +  FY       
Sbjct: 73  GFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIK----- 127

Query: 313 INVDKEELEG 322
             +  EE+E 
Sbjct: 128 -ELKLEEIER 136

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Length = 218

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 35/98 (35%)

Query: 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFV------------------------------ 245
                D V + L+ +     ++L +Q R                                
Sbjct: 32  FMKTHDSVTV-LLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALP 90

Query: 246 ---PRMWSCIAGFI-EPGESLEEAVRRETWEETGIEVG 279
                     AG + +PG SLEE   +E WEE G  + 
Sbjct: 91  GSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLA 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	100.0
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.89
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.82
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.74
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.69
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.69
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.69
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.67
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.67
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.66
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.66
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.66
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.66
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.65
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.64
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.64
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.64
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.64
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.64
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.62
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.62
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.62
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.62
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.62
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.61
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.6
3f13_A	163	Putative nudix hydrolase family member; structural	99.6
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.6
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.6
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.59
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.58
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.58
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.57
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.57
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.57
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.57
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.56
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.56
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.56
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.56
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.56
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.56
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.55
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.54
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.54
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.54
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.53
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.53
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.52
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.52
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.52
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.52
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.51
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.51
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.51
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.51
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.5
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.5
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.5
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.47
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.47
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.47
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.44
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.43
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.39
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.38
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.36
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.3
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.25
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.25
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.1
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.09
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.09
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.99
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	98.98
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.71
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.66
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	96.86
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	94.14
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	87.95
4esj_A	257	Type-2 restriction enzyme DPNI; restriction endonu	83.16
3qt1_I	133	DNA-directed RNA polymerases I, II, and III subun;	80.67

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=100.00  E-value=3.6e-39  Score=301.81  Aligned_cols=218  Identities=28%  Similarity=0.484  Sum_probs=182.3

Q ss_pred             CCCCCCeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCcc
Q 020612           59 SSSSPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSL  138 (323)
Q Consensus        59 ~~~~~~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~  138 (323)
                      .++...+++++|++++.|+.. ++       +.+....++..         .....+|||..  ++.+||+++++     
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~---------~~~~~~~lg~~--~~~~~~~~~~~-----   72 (269)
T 1vk6_A           17 IEKLDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFDL---------VGQRALQIGEW--QGEPVWLVQQQ-----   72 (269)
T ss_dssp             CCTTCEEEEEEEETTEEECGG-GS-------CCEEEGGGGTC---------TTCEEEEEEES--SSSEEEEEECC-----
T ss_pred             cCCCCCeEEEEEECCEEEEeC-CC-------cCCCChhhcCc---------ccCceEEEecc--CCEEEEEEecC-----
Confidence            356677999999999999854 21       11222222211         23467899985  78899999875     


Q ss_pred             cccccccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          139 ASEFGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       139 ~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                            .+..+.+||.++..       ...+++++++|++|++|+++++||+.||+++....+++++.|+  .|+..+||
T Consensus        73 ------~~~~~~~lr~~~~~-------~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~--~C~~~~yp  137 (269)
T 1vk6_A           73 ------RRHDMGSVRQVIDL-------DVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPSKTEWAMLCS--HCRERYYP  137 (269)
T ss_dssp             ------CSSCEECTTHHHHH-------CHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred             ------CCccchhHHHHhcC-------CHHHhHHHHHHHHHHhhhhcCCccccCCCcCccCCCceeeeCC--CCCCEecC
Confidence                  14567889998753       2356789999999999999999999999999999999999998  79999999


Q ss_pred             CcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       219 r~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      +++|+|+++|.+  +++|||+||.+.+.|+|++|||+||+|||+++||+||++||||+++..++++++++|++     ++
T Consensus       138 ~~~~~viv~v~~--~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~-----~~  210 (269)
T 1vk6_A          138 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ  210 (269)
T ss_dssp             CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-----TE
T ss_pred             CCCcEEEEEEEe--CCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCC-----CC
Confidence            999999988876  58999999988778999999999999999999999999999999999999999999985     67


Q ss_pred             eEEEEEEEEeeccCCCCCcccccC
Q 020612          299 QLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ++|++|.+.+..+++.++++|+.+
T Consensus       211 ~~~~~f~a~~~~~~~~~~~~E~~~  234 (269)
T 1vk6_A          211 SLMTAFMAEYDSGDIVIDPKELLE  234 (269)
T ss_dssp             EEEEEEEEEEEECCCCCCTTTEEE
T ss_pred             EEEEEEEEEECCCCcCCCCcceEE
Confidence            899999998887888887778765

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.89  E-value=4.9e-23  Score=181.12  Aligned_cols=122  Identities=24%  Similarity=0.329  Sum_probs=99.3

Q ss_pred             cCCCCCCCCCCCeecc----CCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCC-CCcccceeeecCCC
Q 020612          185 VSRFCGHCGEKTIPKE----AGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPG  259 (323)
Q Consensus       185 ~~~fC~~CG~~~~~~~----~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~-~g~w~lPgG~VE~G  259 (323)
                      +++|||.||+++....    .+.+..|+  .|+..+|++...++.++|++  +++|||+||.+.+ .|.|.+|||+||+|
T Consensus         2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~g   77 (189)
T 3cng_A            2 HMKFCSQCGGEVILRIPEGDTLPRYICP--KCHTIHYQNPKVIVGCIPEW--ENKVLLCKRAIAPYRGKWTLPAGFMENN   77 (189)
T ss_dssp             -CCBCTTTCCBCEEECCTTCSSCEEEET--TTTEEECCCCEEEEEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTT
T ss_pred             CcccCchhCCccccccccCCCCcceECC--CCCCccCCCCceEEEEEEEe--CCEEEEEEccCCCCCCeEECceeeccCC
Confidence            5899999999997642    34566897  79999999988888888777  5899999998633 78999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeeccCCCC
Q 020612          260 ESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINV  315 (323)
Q Consensus       260 Es~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~~i~~  315 (323)
                      ||+++||+||++||||+++....+++.+.++.     ...+++.|.+....+.+..
T Consensus        78 Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~  128 (189)
T 3cng_A           78 ETLVQGAARETLEEANARVEIRELYAVYSLPH-----ISQVYMLFRAKLLDLDFFP  128 (189)
T ss_dssp             CCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGG-----GTEEEEEEEEEECCSCCCC
T ss_pred             CCHHHHHHHHHHHHHCCccccceeEEEEecCC-----CcEEEEEEEEEeCCCccCC
Confidence            99999999999999999998777777766652     3467788888776555443

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.82  E-value=6e-21  Score=182.03  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=117.1

Q ss_pred             ccchhhhHHHhhh-cchhhhhhhhHHHHH-HHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccE
Q 020612          146 QLCFVELRTVMVA-TDWADQRAMADLAIA-GHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPV  223 (323)
Q Consensus       146 ~~~~~~lr~~~~~-~~~~~~~~~~~~~~~-~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pv  223 (323)
                      ..+...+|+.+.. .+..+.  ...+... +.|..|.+|+++++||+.||.++...  ..+.     .|+...||++.++
T Consensus       140 ~iSST~IR~~~~~~g~~~~~--i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~--~~~~-----~~~~~~~~~~~~~  210 (352)
T 2qjt_B          140 NFNATEFRQKFYNGIISKQY--MCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI--EYKR-----LWLKAPFKPNFVT  210 (352)
T ss_dssp             CCCHHHHHHHHHTTCCCGGG--CSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH--HHHH-----HHSSSSSCCEEEE
T ss_pred             CCCchHHHHHHhccCcccch--hhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH--HHHH-----HhcccCCCCCceE
Confidence            3566789998764 321110  1112345 68999999999999999999998432  2222     3678899999999


Q ss_pred             EEEEEEeCCCCeEEEEeeccCC-CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE----EEEEeecCCCCCC-CC
Q 020612          224 VIMLVIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV----YHTSQPWPVGPNS-MP  297 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~~~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~----~~gs~~~~~~~~~-~~  297 (323)
                      +.++|++  +++|||+||.+.+ +|.|++|||+||+|||+++||+||++||||+++....    +...+.|.+.... ..
T Consensus       211 v~~vv~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~  288 (352)
T 2qjt_B          211 VDALVIV--NDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRG  288 (352)
T ss_dssp             EEEEEEE--TTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTS
T ss_pred             EEEEEEE--CCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCc
Confidence            9888885  5899999998643 5899999999999999999999999999999986432    3344444432221 12


Q ss_pred             eeEEEEEEEEeeccC--CCC-CcccccC
Q 020612          298 CQLMVGFYAYAKSFE--INV-DKEELEG  322 (323)
Q Consensus       298 ~~lmi~f~a~~~~~~--i~~-d~~Eied  322 (323)
                      ..++++|++....++  +.+ +.+|+.+
T Consensus       289 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~  316 (352)
T 2qjt_B          289 RTISHVGLFVFDQWPSLPEINAADDAKD  316 (352)
T ss_dssp             EEEEEEEEEEECSCSSCCCCCCCTTEEE
T ss_pred             cEEEEEEEEEEeCCCCCCccCCCccceE
Confidence            357788888776554  332 3455543

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.74  E-value=1.9e-18  Score=163.59  Aligned_cols=163  Identities=17%  Similarity=0.182  Sum_probs=107.7

Q ss_pred             chhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccCCccccccCCCCCCcccCCcccEEEEE
Q 020612          148 CFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIML  227 (323)
Q Consensus       148 ~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~ypr~~pvVivl  227 (323)
                      +-..+|+.+...+...-  -. +--.+.+..|..|+.+++||..|+..+...      .+.. .|+...||++.++|.++
T Consensus       140 SST~IR~~l~~g~~~~~--~~-lvp~~v~~~i~~~~~~~r~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~v~~v  209 (341)
T 2qjo_A          140 SSTAIRGAYFEGKEGDY--LD-KVPPAIADYLQTFQKSERYIALCDEYQFLQ------AYKQ-AWATAPYAPTFITTDAV  209 (341)
T ss_dssp             CHHHHHHHHHHTCGGGT--TT-TSCHHHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH-TTTTSSSCCCEEEEEEE
T ss_pred             CcHHHHHHHHcCCCcch--hh-hCCHHHHHHHHHhcchHHHHHHHHHHHHHH------HHHh-hhhccCCCCCceEEEEE
Confidence            34567887654431110  00 112356788999999999999998865322      1221 27788899999888888


Q ss_pred             EEeCCCCeEEEEeeccCC-CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE----EeecCCCCCC-CCeeEE
Q 020612          228 VIDRENDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT----SQPWPVGPNS-MPCQLM  301 (323)
Q Consensus       228 V~~~~~~riLL~rr~~~~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g----s~~~~~~~~~-~~~~lm  301 (323)
                      |++  +++|||+||.+.+ +|.|++|||+||+|||+++||+||++||||+++....+++    .+.|.+.... ....++
T Consensus       210 i~~--~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (341)
T 2qjo_A          210 VVQ--AGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTIT  287 (341)
T ss_dssp             EEE--TTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEE
T ss_pred             EEe--CCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEE
Confidence            885  5899999997633 7899999999999999999999999999999987544322    2333322111 124567


Q ss_pred             EEEEEEeeccCC-C-CCcccccC
Q 020612          302 VGFYAYAKSFEI-N-VDKEELEG  322 (323)
Q Consensus       302 i~f~a~~~~~~i-~-~d~~Eied  322 (323)
                      ++|++....+++ . .+++|+.+
T Consensus       288 ~~f~~~~~~~~~~~~~~~~e~~~  310 (341)
T 2qjo_A          288 HAYFIQLPGGELPAVKGGDDAQK  310 (341)
T ss_dssp             EEEEEECCSSSCCCCC------C
T ss_pred             EEEEEEecCCCcCccCCCCceee
Confidence            888887765543 2 34456543

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.69  E-value=7.8e-17  Score=134.36  Aligned_cols=93  Identities=26%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC-CeeEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM-PCQLM  301 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~-~~~lm  301 (323)
                      ++.++|++  +++|||+|+.   .|.|++|||+||+|||+++||+||++||||+++..+.+++...+.+...+. ....+
T Consensus         6 aag~vv~~--~~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~   80 (134)
T 3i7u_A            6 SAGGVLFK--DGEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTV   80 (134)
T ss_dssp             EEEEEEEE--TTEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEE--CCEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEE
Confidence            34455555  5899999986   478999999999999999999999999999999888888875544332221 12344


Q ss_pred             EEEEEEeeccCCCCCccccc
Q 020612          302 VGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       302 i~f~a~~~~~~i~~d~~Eie  321 (323)
                      +.|.+...++++.++ +|+.
T Consensus        81 ~~f~~~~~~~~~~~~-~E~~   99 (134)
T 3i7u_A           81 KYYLMKYKEGEPRPS-WEVK   99 (134)
T ss_dssp             EEEEEEEEEECCCCC-TTSS
T ss_pred             EEEEEEEcCCcCcCC-hhhe
Confidence            557777766776665 3544

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.69  E-value=1.7e-16  Score=135.95  Aligned_cols=99  Identities=32%  Similarity=0.358  Sum_probs=67.7

Q ss_pred             CCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 020612          211 SCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP  290 (323)
Q Consensus       211 ~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~  290 (323)
                      .+.....+.+...|.++|++  +++|||+||.+. +|.|++|||++|+|||+++||+||++||||+++....+++.+.++
T Consensus        13 ~~~~~~~~~~~~~v~~ii~~--~~~vLL~~r~~~-~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~   89 (171)
T 3id9_A           13 KRRLYIENIMQVRVTGILIE--DEKVLLVKQKVA-NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKP   89 (171)
T ss_dssp             ---------CEEEEEEEEEE--TTEEEEEECSST-TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEET
T ss_pred             hhhhccCCceEEEEEEEEEE--CCEEEEEEEECC-CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEccc
Confidence            34444444556666666666  589999999863 789999999999999999999999999999999888888887766


Q ss_pred             CCCCCCCeeEEEEEEEEeeccCCCC
Q 020612          291 VGPNSMPCQLMVGFYAYAKSFEINV  315 (323)
Q Consensus       291 ~~~~~~~~~lmi~f~a~~~~~~i~~  315 (323)
                      ...   ....++.|.+....+++.+
T Consensus        90 ~~~---~~~~~~~~~~~~~~~~~~~  111 (171)
T 3id9_A           90 DAS---PSLLHITFLLERIEGEITL  111 (171)
T ss_dssp             TSS---SCEEEEEEEEEEC------
T ss_pred             CCC---CcEEEEEEEEEEcCCcccC
Confidence            532   3355666777665554443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.67  E-value=5.9e-16  Score=128.00  Aligned_cols=95  Identities=22%  Similarity=0.122  Sum_probs=72.0

Q ss_pred             cCCcccEEEEEEEe-CCCCe--EEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          217 YPRVDPVVIMLVID-RENDR--VLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       217 ypr~~pvVivlV~~-~~~~r--iLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      |++..+++.++|++ +.+++  |||+||.+.+ +.|++|||++|+|||+++||+||++||||+.+....+++.+.++...
T Consensus         5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~-~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   83 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGENFKGIVLIERKYPP-VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD   83 (139)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS-CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred             ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC-CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence            67777777777765 12467  9999988643 34999999999999999999999999999999888888887765432


Q ss_pred             CCCCeeEEEEEEEEeeccCCC
Q 020612          294 NSMPCQLMVGFYAYAKSFEIN  314 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~~~~i~  314 (323)
                      .. .+.+++.|.+.. .+++.
T Consensus        84 ~~-~~~~~~~f~~~~-~~~~~  102 (139)
T 2yyh_A           84 PR-AHVVSVVWIGDA-QGEPK  102 (139)
T ss_dssp             TT-SCEEEEEEEEEE-ESCCC
T ss_pred             CC-ceEEEEEEEEec-CCccC
Confidence            22 345667777776 34443

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.67  E-value=3.2e-16  Score=131.42  Aligned_cols=95  Identities=23%  Similarity=0.333  Sum_probs=72.1

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi  302 (323)
                      +|.+++.+  +++|||+||.....|.|.+|||++|+|||+++||+||++||||+++....+++...+.+..  ....+.+
T Consensus         7 ~v~~ii~~--~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~   82 (153)
T 3shd_A            7 TVACVVHA--EGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPD--KTPFLRF   82 (153)
T ss_dssp             EEEEEEEE--TTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTT--SCCEEEE
T ss_pred             EEEEEEEe--CCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCC--CceEEEE
Confidence            33344443  5899999997655789999999999999999999999999999999988888887665432  2445667


Q ss_pred             EEEEEeeccC-CCCCccccc
Q 020612          303 GFYAYAKSFE-INVDKEELE  321 (323)
Q Consensus       303 ~f~a~~~~~~-i~~d~~Eie  321 (323)
                      .|.+...... ..++++|+.
T Consensus        83 ~f~~~~~~~~~~~~~~~E~~  102 (153)
T 3shd_A           83 LFAIELEQICPTQPHDSDID  102 (153)
T ss_dssp             EEEEECSSCCCCCCCSTTCC
T ss_pred             EEEEEccccCcCCCCcccce
Confidence            7887766443 455556654

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.66  E-value=7e-16  Score=129.74  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             cCCcccEEEEEEEeCCCCeEEEEeeccC-----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          217 YPRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       217 ypr~~pvVivlV~~~~~~riLL~rr~~~-----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      .|....++.++|++. ++++||+||.+.     .+|.|.+|||++|+|||+++||+||++||||+.+..+.+++...+.+
T Consensus         9 ~~~~~~~~~~vi~~~-~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~   87 (159)
T 1sjy_A            9 VPVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRF   87 (159)
T ss_dssp             CCCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             CCeEEEeEEEEEEeC-CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEeccc
Confidence            345556667777764 589999999852     46899999999999999999999999999999999888888876554


Q ss_pred             CCCCCCeeEEEEEEEEeeccC-CCC-Cccccc
Q 020612          292 GPNSMPCQLMVGFYAYAKSFE-INV-DKEELE  321 (323)
Q Consensus       292 ~~~~~~~~lmi~f~a~~~~~~-i~~-d~~Eie  321 (323)
                      .. + ....++.|.+....+. +.+ +.+|+.
T Consensus        88 ~~-~-~~~~~~~f~~~~~~~~~~~~~~~~E~~  117 (159)
T 1sjy_A           88 PD-G-VLILRHVWLAEPEPGQTLAPAFTDEIA  117 (159)
T ss_dssp             TT-S-CEEEEEEEEEEECSSCCCCCCCCSSEE
T ss_pred             CC-C-ceEEEEEEEEEccCCCccccCCCCcee
Confidence            22 1 3467777888776555 665 556654

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.66  E-value=7.1e-16  Score=136.33  Aligned_cols=106  Identities=24%  Similarity=0.259  Sum_probs=70.5

Q ss_pred             ccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 020612          216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (323)
Q Consensus       216 ~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~  295 (323)
                      .+++....|.++|++.++++|||+|++...+|.|.+|||+||+|||+++||+||++||||+++....+++..........
T Consensus        21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~  100 (199)
T 3h95_A           21 QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA  100 (199)
T ss_dssp             -----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred             ccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence            45666677778888876789999998766689999999999999999999999999999999987777774322211111


Q ss_pred             CCeeEEEEEEEEee--ccCCCCCcccccC
Q 020612          296 MPCQLMVGFYAYAK--SFEINVDKEELEG  322 (323)
Q Consensus       296 ~~~~lmi~f~a~~~--~~~i~~d~~Eied  322 (323)
                       .....+.|.+...  ...+.++++|+.+
T Consensus       101 -~~~~~~~~~~~~~~~~~~~~~~~~E~~~  128 (199)
T 3h95_A          101 -FGKSDMYIICRLKPYSFTINFCQEECLR  128 (199)
T ss_dssp             -----CEEEEEEEEESCCCCCCCTTTEEE
T ss_pred             -ceeEEEEEEEEEcCCCcccCCCccceee
Confidence             1222333444433  3455566667654

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.66  E-value=4.3e-16  Score=138.78  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=77.2

Q ss_pred             CCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      |....|++..++|.++|++  +++|||+|+..  .|.|++|||+||+|||+++||+||++||||+.+....+++.+.+..
T Consensus        59 ~~~~~~~~~~~~v~~vv~~--~~~vLLv~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~  134 (205)
T 3q1p_A           59 ASETGYQTPKVDIRAVVFQ--NEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEK  134 (205)
T ss_dssp             SCCCSSCCCEEEEEEEEEE--TTEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHH
T ss_pred             ccccCCCCCcceEEEEEEE--CCEEEEEEEcC--CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccc
Confidence            3445578777788888887  58999999874  6899999999999999999999999999999999888888776532


Q ss_pred             C--CCCCCeeEEEEEEEEeeccCCCCCccccc
Q 020612          292 G--PNSMPCQLMVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       292 ~--~~~~~~~lmi~f~a~~~~~~i~~d~~Eie  321 (323)
                      .  +....+.+.+.|.+....+.+..+ .|+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~E~~  165 (205)
T 3q1p_A          135 HQPSPSATHVYKIFIGCEIIGGEKKTS-IETE  165 (205)
T ss_dssp             HSCCCCSSCEEEEEEEEEEEEECCCCC-TTSC
T ss_pred             cCCCCCCceEEEEEEEEEecCCccCCC-Ccce
Confidence            1  111234555667777666666654 4443

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.66  E-value=4.1e-16  Score=130.74  Aligned_cols=96  Identities=24%  Similarity=0.216  Sum_probs=64.3

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~  299 (323)
                      .+|.+++++. ++++||+++.+.+  ++.|++|||+||+|||+++||+||++||||+++..+.+++.+....   +....
T Consensus         6 ~~v~vi~~~~-~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~---~~~~~   81 (145)
T 2w4e_A            6 RAVFILPVTA-QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQP---SISGV   81 (145)
T ss_dssp             EEEEEEEEET-TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCT---TTCCC
T ss_pred             CEEEEEEEcC-CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCC---CccCc
Confidence            4666666765 5789998876543  3489999999999999999999999999999998888887642211   12234


Q ss_pred             EEEEEEEEee-ccCCCCCccccc
Q 020612          300 LMVGFYAYAK-SFEINVDKEELE  321 (323)
Q Consensus       300 lmi~f~a~~~-~~~i~~d~~Eie  321 (323)
                      .++.|++... .+....+++|+.
T Consensus        82 ~~~~f~~~~~~~~~~~~~~~E~~  104 (145)
T 2w4e_A           82 VFYPLLALGVTLGAAQLEDTETI  104 (145)
T ss_dssp             EEEEEEEEEEEEC--------CE
T ss_pred             eEEEEEEEecccCCCCCCCCCeE
Confidence            5666777533 334445556654

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.65  E-value=7.1e-16  Score=130.96  Aligned_cols=102  Identities=23%  Similarity=0.178  Sum_probs=75.2

Q ss_pred             cCCcccEEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 020612          217 YPRVDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (323)
Q Consensus       217 ypr~~pvVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~  295 (323)
                      .++...+|.++|++  +++|||+||.+. ..|.|.+|||+||+|||+++||+||++|||||++....+++.+.+.+....
T Consensus        25 ~~~~~~~v~~vi~~--~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  102 (157)
T 4dyw_A           25 TEQPRVGCGAAIVR--DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANG  102 (157)
T ss_dssp             -CCCEEEEEEEEEE--TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTTT
T ss_pred             CCCceeEEEEEEEE--CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCCC
Confidence            34445566666666  589999999853 478999999999999999999999999999999988888888766543222


Q ss_pred             CCeeEEEEEEEEeeccCCCC-Cccccc
Q 020612          296 MPCQLMVGFYAYAKSFEINV-DKEELE  321 (323)
Q Consensus       296 ~~~~lmi~f~a~~~~~~i~~-d~~Eie  321 (323)
                       ...+++.|.+....+.+.. +++|+.
T Consensus       103 -~~~~~~~f~~~~~~~~~~~~~~~E~~  128 (157)
T 4dyw_A          103 -EHWVAPVYLAHAFSGEPRVVEPDRHE  128 (157)
T ss_dssp             -EEEEEEEEEESEEESCCCCSCTTTEE
T ss_pred             -cEEEEEEEEEEEcCCCcccCCCCcEe
Confidence             3456677777665554433 444543

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.64  E-value=8.5e-16  Score=128.43  Aligned_cols=88  Identities=27%  Similarity=0.294  Sum_probs=66.1

Q ss_pred             CCeEEEEeeccCC-CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612          233 NDRVLLSRQSRFV-PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (323)
Q Consensus       233 ~~riLL~rr~~~~-~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~  311 (323)
                      +++|||+||.+.. +|.|.+|||+||+|||+++||+||++||||+++....+++...+.+.... ...+++.|.+.....
T Consensus        18 ~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~   96 (153)
T 2b0v_A           18 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG-TTYLRFTFSGQVVSF   96 (153)
T ss_dssp             TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT-EEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCC-cEEEEEEEEEEeCCC
Confidence            5899999998654 78999999999999999999999999999999988888887655432211 334556677766543


Q ss_pred             CC-CCCccccc
Q 020612          312 EI-NVDKEELE  321 (323)
Q Consensus       312 ~i-~~d~~Eie  321 (323)
                      .. ..+++|+.
T Consensus        97 ~~~~~~~~e~~  107 (153)
T 2b0v_A           97 DPDRKLDTGIV  107 (153)
T ss_dssp             CTTSCCCTTEE
T ss_pred             CCCCCCCCCee
Confidence            32 33344543

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.64  E-value=1.1e-15  Score=128.63  Aligned_cols=88  Identities=27%  Similarity=0.376  Sum_probs=69.6

Q ss_pred             cccEEEEEEEeCCCCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      +..++.+++++. +++|||+|+.+. ..|.|++|||+||+|||+++||+||++||||+++....+++.+...      ..
T Consensus        19 ~~~~v~~~i~~~-~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~------~~   91 (156)
T 3gg6_A           19 VCYVVLAVFLSE-QDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG------PS   91 (156)
T ss_dssp             CEEEEEEECBCT-TSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS------TT
T ss_pred             eEEEEEEEEEeC-CCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC------CC
Confidence            334555555554 689999999863 3789999999999999999999999999999999999999887643      34


Q ss_pred             eEEEEEEEEeeccCCC
Q 020612          299 QLMVGFYAYAKSFEIN  314 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~  314 (323)
                      .+.+.|.+....+++.
T Consensus        92 ~~~~~f~~~~~~~~~~  107 (156)
T 3gg6_A           92 WVRFVFLARPTGGILK  107 (156)
T ss_dssp             EEEEEEEEEEEEECCC
T ss_pred             EEEEEEEEEeeCCeec
Confidence            5677788877655444

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.64  E-value=2.2e-15  Score=124.89  Aligned_cols=89  Identities=19%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccC----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRF----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~  296 (323)
                      ..++.++|.+  +++|||+||.+.    .+|.|++|||++|+||++++||+||++||||+.+....+++...+.+..   
T Consensus         6 ~~~v~~vi~~--~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---   80 (140)
T 3gwy_A            6 IEVVAAVIRL--GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPD---   80 (140)
T ss_dssp             EEEEEEEEEE--TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSS---
T ss_pred             EEEEEEEEEe--CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCC---
Confidence            4455666665  589999999853    5789999999999999999999999999999999999999987776543   


Q ss_pred             CeeEEEEEEEEeeccCCC
Q 020612          297 PCQLMVGFYAYAKSFEIN  314 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i~  314 (323)
                      ....++.|.+....+.+.
T Consensus        81 ~~~~~~~f~~~~~~~~~~   98 (140)
T 3gwy_A           81 FEITMHAFLCHPVGQRYV   98 (140)
T ss_dssp             CCEEEEEEEEEECCSCCC
T ss_pred             ceEEEEEEEEEecCCccc
Confidence            335667788877655444

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.64  E-value=6.5e-16  Score=140.15  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=79.6

Q ss_pred             CcccCCcccEEEEEEEe--CCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecC
Q 020612          214 KRIYPRVDPVVIMLVID--RENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP  290 (323)
Q Consensus       214 ~~~ypr~~pvVivlV~~--~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~  290 (323)
                      ...|++...+|.++|+.  +++++|||++|.+ +..|.|.+|||+||+|||+++||+||++||||+++..+.+++++.++
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~   85 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   85 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence            45567766677777663  4457999999986 44789999999999999999999999999999999988999888765


Q ss_pred             CCCCCCCeeEEEEEEEEeeccCCCCCccccc
Q 020612          291 VGPNSMPCQLMVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       291 ~~~~~~~~~lmi~f~a~~~~~~i~~d~~Eie  321 (323)
                      ....+ ...+.+.|++.+..+....+.+|+.
T Consensus        86 ~r~~~-~~~v~~~y~a~~~~~~~~~~~~e~~  115 (226)
T 2fb1_A           86 DRDPG-ERVVSIAYYALININEYDRELVQKH  115 (226)
T ss_dssp             TSSSS-SCEEEEEEEEECCTTSSCHHHHHHT
T ss_pred             CcCCC-ceEEEEEEEEEecCcccccCCcccc
Confidence            43322 2456677888766544433334443

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.62  E-value=2.1e-15  Score=128.52  Aligned_cols=93  Identities=26%  Similarity=0.318  Sum_probs=70.7

Q ss_pred             cccEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      ...++.++|++.++++|||+||.+ .+.|.|++|||+||+|||+++||+||++||||+++..+++++.+.+.+.... ..
T Consensus         9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~   87 (161)
T 3exq_A            9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ-HR   87 (161)
T ss_dssp             EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS-SE
T ss_pred             ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC-eE
Confidence            345566666665336999999875 3467899999999999999999999999999999999999988777653332 34


Q ss_pred             eEEEEEEEEeeccCC
Q 020612          299 QLMVGFYAYAKSFEI  313 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i  313 (323)
                      ..++.|.+....+.+
T Consensus        88 ~~~~~~~~~~~~~~~  102 (161)
T 3exq_A           88 KLGLLYRASNFTGTL  102 (161)
T ss_dssp             EEEEEEEECCEESCC
T ss_pred             EEEEEEEEeccCCcc
Confidence            566666665554443

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.62  E-value=2.5e-15  Score=130.51  Aligned_cols=82  Identities=23%  Similarity=0.293  Sum_probs=64.6

Q ss_pred             CCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeec
Q 020612          232 ENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS  310 (323)
Q Consensus       232 ~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~  310 (323)
                      .+++|||+||.+ ...|.|.+|||+||+|||+++||+||++||||+++..+.+++.+.+.+.... ....++.|.+....
T Consensus        34 ~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~  112 (176)
T 3q93_A           34 QPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEP-ELMDVHVFCTDSIQ  112 (176)
T ss_dssp             CSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCS-CEEEEEEEEESCEE
T ss_pred             eCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCC-cEEEEEEEEEECCC
Confidence            368999998864 3578999999999999999999999999999999999999998776554322 34456667775544


Q ss_pred             cCCC
Q 020612          311 FEIN  314 (323)
Q Consensus       311 ~~i~  314 (323)
                      +.+.
T Consensus       113 ~~~~  116 (176)
T 3q93_A          113 GTPV  116 (176)
T ss_dssp             SCCC
T ss_pred             CCcC
Confidence            4443

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.62  E-value=4.2e-15  Score=120.22  Aligned_cols=83  Identities=29%  Similarity=0.371  Sum_probs=65.2

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi  302 (323)
                      ++.++|++. +++|||+||++   |.|.+|||++++|||+++|++||++||||+.+....+++...+.+..   ....+.
T Consensus         4 ~~~~vi~~~-~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~   76 (126)
T 1vcd_A            4 GAGGVVFNA-KREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPK---GVEREV   76 (126)
T ss_dssp             EEEEEEECT-TSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTT---SCEEEE
T ss_pred             EEEEEEEcC-CCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCC---ceEEEE
Confidence            455566664 57999999875   88999999999999999999999999999999988888887665522   234556


Q ss_pred             EEEEEeeccC
Q 020612          303 GFYAYAKSFE  312 (323)
Q Consensus       303 ~f~a~~~~~~  312 (323)
                      .|.+....+.
T Consensus        77 ~~~~~~~~~~   86 (126)
T 1vcd_A           77 HWFLMRGEGA   86 (126)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEcCCC
Confidence            6776655444

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.62  E-value=2.4e-15  Score=129.11  Aligned_cols=102  Identities=30%  Similarity=0.334  Sum_probs=71.1

Q ss_pred             CcccCCcccEEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      ...+.+..++|.+++++  ++++||+|+.+.  .+|.|.+|||++|+|||+++||+||++||||+ +..+.+++.+....
T Consensus        27 ~~~~~~~~~~v~vii~~--~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~  103 (170)
T 1v8y_A           27 RYEIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSP  103 (170)
T ss_dssp             TEEEEEECCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCT
T ss_pred             eEEEEecCCeEEEEEEE--CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCC
Confidence            44455555678888887  589999988653  46899999999999999999999999999999 98888888764332


Q ss_pred             CCCCCCeeEEEEEEEEeec-cCCCCCccccc
Q 020612          292 GPNSMPCQLMVGFYAYAKS-FEINVDKEELE  321 (323)
Q Consensus       292 ~~~~~~~~lmi~f~a~~~~-~~i~~d~~Eie  321 (323)
                      +   .....+..|++.... ..+..+++|+.
T Consensus       104 ~---~~~~~~~~f~~~~~~~~~~~~~~~E~~  131 (170)
T 1v8y_A          104 G---FTDEKTHVFLAENLKEVEAHPDEDEAI  131 (170)
T ss_dssp             T---TBCCEEEEEEEEEEEECC--------C
T ss_pred             C---ccccEEEEEEEEeccccCCCCCCCceE
Confidence            1   233566677776543 34444555654

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.62  E-value=2.9e-15  Score=125.96  Aligned_cols=92  Identities=25%  Similarity=0.319  Sum_probs=71.2

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~  297 (323)
                      ..+|.++|++. +++|||++|.+   ..+|.|.+|||++|+|||+++||+||++||||+.+....+++...+.+..   .
T Consensus         8 ~~~v~~vi~~~-~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~---~   83 (153)
T 3grn_A            8 IISVYALIRNE-KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTE---K   83 (153)
T ss_dssp             EEEEEEEEECT-TCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSS---C
T ss_pred             EEEEEEEEEcC-CCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCC---c
Confidence            34555666654 58999999875   35789999999999999999999999999999999888888877655432   3


Q ss_pred             eeEEEEEEEEeeccCCCCC
Q 020612          298 CQLMVGFYAYAKSFEINVD  316 (323)
Q Consensus       298 ~~lmi~f~a~~~~~~i~~d  316 (323)
                      ...++.|++....+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (153)
T 3grn_A           84 KVIAIVFDGGYVVADVKLS  102 (153)
T ss_dssp             EEEEEEEEEEECCCCCCCC
T ss_pred             eEEEEEEEEEecCCcEecC
Confidence            4566777777666665553

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.61  E-value=1.4e-15  Score=135.43  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             CCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      |....|++....|.++|++  +++|||+|+.   .|.|++|||+||+|||+++||+||++||||+++....+++.+.+..
T Consensus        61 ~~~~~y~~~~~~v~~vv~~--~~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~  135 (206)
T 3o8s_A           61 CNETGYQTPKLDTRAAIFQ--EDKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHK  135 (206)
T ss_dssp             -------CCEEEEEEEEEE--TTEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHH
T ss_pred             ccccCCCCCCccEEEEEEE--CCEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccc
Confidence            3344477767777777777  4899999987   7899999999999999999999999999999999999988876421


Q ss_pred             C--CCCCCeeEEEEEEEEeeccCCCCC
Q 020612          292 G--PNSMPCQLMVGFYAYAKSFEINVD  316 (323)
Q Consensus       292 ~--~~~~~~~lmi~f~a~~~~~~i~~d  316 (323)
                      .  .....+...+.|.+....+.+..+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (206)
T 3o8s_A          136 NNPAKSAHRVTKVFILCRLLGGEFQPN  162 (206)
T ss_dssp             HCC-----CEEEEEEEEEEEEECCCCC
T ss_pred             cCCCCCCceEEEEEEEEEecCCeecCC
Confidence            1  111123455666676666666554

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.60  E-value=3.6e-15  Score=125.45  Aligned_cols=99  Identities=18%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEEEEeecCCCCC--C-
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYHTSQPWPVGPN--S-  295 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~gs~~~~~~~~--~-  295 (323)
                      .++.++|++. +++|||+||.+ ..+|.|++|||++|+|||+++||+||++||||+.+  ..+.+++...+.+...  + 
T Consensus        19 ~~v~~vi~~~-~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T 1rya_A           19 VSLDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT   97 (160)
T ss_dssp             EEEEEEEECT-TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS
T ss_pred             EEEEEEEEcC-CCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCC
Confidence            4556666664 58999999875 33789999999999999999999999999999985  4677777654432211  1 


Q ss_pred             --CCeeEEEEEEEEeeccCCCCCccccc
Q 020612          296 --MPCQLMVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       296 --~~~~lmi~f~a~~~~~~i~~d~~Eie  321 (323)
                        ..+.+++.|.+....+++..+.+|+.
T Consensus        98 ~~~~~~~~~~f~~~~~~~~~~~~~~e~~  125 (160)
T 1rya_A           98 DFTTHYVVLGFRFRVSEEELLLPDEQHD  125 (160)
T ss_dssp             SSCEEEEEEEEEEECCGGGCCCCSSSEE
T ss_pred             CcCcEEEEEEEEEEcCccccccCCCccc
Confidence              11456777877776666665555654

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.60  E-value=4.5e-15  Score=127.96  Aligned_cols=85  Identities=21%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMV  302 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi  302 (323)
                      .++++|++. ++++||++|.   +|.|++|||+||+|||+++||+||++||||+++..+.+++++.++.       ..+.
T Consensus        17 ~~~~~ii~~-~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~-------~~~~   85 (163)
T 3f13_A           17 RRATAIIEM-PDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF-------NAHK   85 (163)
T ss_dssp             EEEEEECEE-TTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS-------EEEE
T ss_pred             EEEEEEEEe-CCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC-------eEEE
Confidence            333333333 5889999886   5899999999999999999999999999999999999988876652       5666


Q ss_pred             EEEEEeeccCCCCCcccc
Q 020612          303 GFYAYAKSFEINVDKEEL  320 (323)
Q Consensus       303 ~f~a~~~~~~i~~d~~Ei  320 (323)
                      .|++.. .+++..++ |+
T Consensus        86 ~f~~~~-~~~~~~~~-E~  101 (163)
T 3f13_A           86 VYLCIA-QGQPKPQN-EI  101 (163)
T ss_dssp             EEEEEC--CCCCCCT-TC
T ss_pred             EEEEEE-CCcCccCC-Cc
Confidence            777754 45555543 44

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.60  E-value=3.8e-15  Score=126.17  Aligned_cols=97  Identities=26%  Similarity=0.265  Sum_probs=69.2

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE-------------ee
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS-------------QP  288 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs-------------~~  288 (323)
                      .++.++|++  +++|||+||++  .|.|.+|||+||+|||+++||+||++||||+++..+.+++.             ++
T Consensus         7 ~~v~~vi~~--~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (159)
T 3f6a_A            7 FTVSVFIVC--KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI   82 (159)
T ss_dssp             EEEEEEEEE--TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred             EEEEEEEEE--CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence            355566666  58999999976  78999999999999999999999999999999876665532             11


Q ss_pred             cCC-----CCCCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          289 WPV-----GPNSMPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       289 ~~~-----~~~~~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      .+.     ........+.+.|.+....+++.++.+|+.+
T Consensus        83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~  121 (159)
T 3f6a_A           83 NPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKI  121 (159)
T ss_dssp             CCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCC
T ss_pred             CccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccc
Confidence            110     0001123555778888777777776666543

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.60  E-value=1.5e-15  Score=138.95  Aligned_cols=101  Identities=19%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             CCCcccCCcccEEEEEEE--eCCCCeEEEEeecc-CCCCcccceeeecCC--CCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612          212 CKKRIYPRVDPVVIMLVI--DRENDRVLLSRQSR-FVPRMWSCIAGFIEP--GESLEEAVRRETWEETGIEVGEVVYHTS  286 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~--~~~~~riLL~rr~~-~~~g~w~lPgG~VE~--GEs~eeAa~REv~EEtGL~v~~v~~~gs  286 (323)
                      |....|++...+|.++|+  ++++++|||++|.+ +..|.|++|||+||+  |||+++||+||++||||+++..+.++++
T Consensus        13 ~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~   92 (240)
T 3gz5_A           13 YDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT   92 (240)
T ss_dssp             --------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred             cCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEE
Confidence            444566666556655555  44446999999885 447899999999999  9999999999999999999999999998


Q ss_pred             eecCCCCCCCCeeEEEEEEEEeeccCC
Q 020612          287 QPWPVGPNSMPCQLMVGFYAYAKSFEI  313 (323)
Q Consensus       287 ~~~~~~~~~~~~~lmi~f~a~~~~~~i  313 (323)
                      +.++....+ ...+.+.|++.+.....
T Consensus        93 ~~~~~r~~~-~~~~~~~y~a~~~~~~~  118 (240)
T 3gz5_A           93 VGNNSRDAR-GWSVTVCYTALMSYQAC  118 (240)
T ss_dssp             EEESSSSTT-SCEEEEEEEEECCHHHH
T ss_pred             eCCCccCCC-ceEEEEEEEEEeccccc
Confidence            877654332 34677888887664433

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.59  E-value=1.8e-15  Score=131.15  Aligned_cols=103  Identities=25%  Similarity=0.242  Sum_probs=74.7

Q ss_pred             cccCCcccEEEEEEEeCCCCeEEEEeeccC--CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRF--VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (323)
Q Consensus       215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~~--~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~  292 (323)
                      +.+.+...++.+++++. +++|||+||.+.  .+|.|++|||+||+|||+++||+||++||||+++..+.+++.+.... 
T Consensus        35 ~~~~~~~~~v~v~i~~~-~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~-  112 (182)
T 2yvp_A           35 VYRPGPVAASFVLPVTE-RGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQP-  112 (182)
T ss_dssp             EEBCSSCEEEEEEEBCT-TSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCT-
T ss_pred             EEEEecCCEEEEEEEcC-CCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCC-
Confidence            34455555667777765 589999998753  36799999999999999999999999999999999888888753322 


Q ss_pred             CCCCCeeEEEEEEEEee--ccCCCCCccccc
Q 020612          293 PNSMPCQLMVGFYAYAK--SFEINVDKEELE  321 (323)
Q Consensus       293 ~~~~~~~lmi~f~a~~~--~~~i~~d~~Eie  321 (323)
                        +.....+..|++...  .+.+..+.+|+.
T Consensus       113 --~~~~~~~~~f~~~~~~~~~~~~~~~~E~~  141 (182)
T 2yvp_A          113 --SFTAVVFHPFLALKARVVTPPTLEEGELL  141 (182)
T ss_dssp             --TTBCCEEEEEEECSCEECSCCCCCTTCCE
T ss_pred             --CccccEEEEEEEeccccCCCCCCCCCceE
Confidence              123456667777533  244445666654

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.58  E-value=1.3e-14  Score=124.11  Aligned_cols=96  Identities=21%  Similarity=0.302  Sum_probs=71.8

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccC---CCCccc-ceeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEEEee-cCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRF---VPRMWS-CIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP-WPVGP  293 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~---~~g~w~-lPgG~VE~GEs~eeAa~REv~EEtGL~v~~--v~~~gs~~-~~~~~  293 (323)
                      ..++.++|++. +++|||+||...   .+|.|+ +|||+|++|||+++||+||++||||+++..  +.+++.+. +.+..
T Consensus        34 ~~~v~v~i~~~-~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~  112 (171)
T 1q27_A           34 VRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL  112 (171)
T ss_dssp             CEEEEEEEEET-TTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred             ceEEEEEEECC-CCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence            45666677765 579999998542   378998 999999999999999999999999998866  56777765 55422


Q ss_pred             CCCCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          294 NSMPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                          ...+..|.+.. .+++.+++.|+.+
T Consensus       113 ----~~~~~~f~~~~-~~~~~~~~~E~~~  136 (171)
T 1q27_A          113 ----SSFMCVYELRS-DATPIFNPNDISG  136 (171)
T ss_dssp             ----SSEEEEEEEEC-CCCCCSCTTTCSC
T ss_pred             ----ccEEEEEEEEE-CCccccCchhhhe
Confidence                12666777766 5566666666554

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.58  E-value=4.2e-15  Score=130.24  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             cccEEEEEEEeCCCC--eEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCC
Q 020612          220 VDPVVIMLVIDREND--RVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPN  294 (323)
Q Consensus       220 ~~pvVivlV~~~~~~--riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~  294 (323)
                      ...++++++++. ++  +|||+||.+   ..+|.|++|||+||+|||+++||+||++||||+++..+.+++...+.+.. 
T Consensus        33 ~~~~~~~v~i~~-~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~-  110 (194)
T 1nqz_A           33 YRRAAVLVALTR-EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTP-  110 (194)
T ss_dssp             CEEEEEEEEEES-SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEET-
T ss_pred             CceEEEEEEEec-CCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCC-
Confidence            334555555554 45  899999874   35789999999999999999999999999999999999998887654432 


Q ss_pred             CCCeeEEEEEEEEeec-cC-CCCCcccccC
Q 020612          295 SMPCQLMVGFYAYAKS-FE-INVDKEELEG  322 (323)
Q Consensus       295 ~~~~~lmi~f~a~~~~-~~-i~~d~~Eied  322 (323)
                        ....+..|.+.... .+ ...+++|+.+
T Consensus       111 --~~~~~~~f~~~~~~~~~~~~~~~~E~~~  138 (194)
T 1nqz_A          111 --VGFHVTPVLGRIAPEALDTLRVTPEVAQ  138 (194)
T ss_dssp             --TTEEEEEEEEEECGGGGGGCCCCTTEEE
T ss_pred             --CCeEEEEEEEEecCCccccCCCccceeE
Confidence              23456667776652 33 4556666543

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.57  E-value=7.9e-15  Score=131.15  Aligned_cols=92  Identities=28%  Similarity=0.354  Sum_probs=69.1

Q ss_pred             CcccCCcccEEEEEEEeCCCCeEEEEeeccCC-------CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612          214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS  286 (323)
Q Consensus       214 ~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~-------~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs  286 (323)
                      +..+.+. .+|.++++++++++|||+||.+.+       ++.|++|||+||+||++++||+||++||||+++..+.++++
T Consensus        51 r~~~~~~-~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~  129 (209)
T 1g0s_A           51 REIFERG-HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS  129 (209)
T ss_dssp             EEEEECC-CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred             EEEEeCC-CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence            3444443 466667777556899999887643       46799999999999999999999999999999999999887


Q ss_pred             eecCCCCCCCCeeEEEEEEEEee
Q 020612          287 QPWPVGPNSMPCQLMVGFYAYAK  309 (323)
Q Consensus       287 ~~~~~~~~~~~~~lmi~f~a~~~  309 (323)
                      +. +.  .+.....+..|++...
T Consensus       130 ~~-~~--~g~~~~~~~~f~a~~~  149 (209)
T 1g0s_A          130 FL-AS--PGGTSERSSIMVGEVD  149 (209)
T ss_dssp             EE-SC--TTTBCCEEEEEEEECC
T ss_pred             Ee-cC--CCccCcEEEEEEEEEc
Confidence            63 21  1123356677787753

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.57  E-value=9e-15  Score=120.09  Aligned_cols=95  Identities=20%  Similarity=0.221  Sum_probs=64.7

Q ss_pred             EEEEEEEeCC--CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE----EEeecCCCCCCC
Q 020612          223 VVIMLVIDRE--NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH----TSQPWPVGPNSM  296 (323)
Q Consensus       223 vVivlV~~~~--~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~----gs~~~~~~~~~~  296 (323)
                      ++.++|++.+  +++|||+||+ ..+|.|.+|||+||+|||+++||+||++||||+.+..+..+    +...+.+.   .
T Consensus         5 ~~~~vi~~~~~~~~~vLl~~r~-~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~---~   80 (138)
T 1ktg_A            5 AAGLVIYRKLAGKIEFLLLQAS-YPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK---G   80 (138)
T ss_dssp             EEEEEEEEEETTEEEEEEEEES-STTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET---T
T ss_pred             EEEEEEEEecCCCcEEEEEEcc-CCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC---C
Confidence            4455555432  3589999987 34679999999999999999999999999999976555443    34433322   1


Q ss_pred             CeeEEEEEEEEeeccCCCCCccccc
Q 020612          297 PCQLMVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i~~d~~Eie  321 (323)
                      .+..++.|.+.........+++|+.
T Consensus        81 ~~~~~~~f~~~~~~~~~~~~~~e~~  105 (138)
T 1ktg_A           81 KPKSVKYWLAKLNNPDDVQLSHEHQ  105 (138)
T ss_dssp             EEEEEEEEEEEECSCCCCCCCTTEE
T ss_pred             CceEEEEEEEEecCCcccCCCchhc
Confidence            3456667777766533334445543

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.57  E-value=1e-14  Score=127.29  Aligned_cols=76  Identities=25%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             CCeEEEEeecc--------CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEE
Q 020612          233 NDRVLLSRQSR--------FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGF  304 (323)
Q Consensus       233 ~~riLL~rr~~--------~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f  304 (323)
                      +++|||+||.+        ..+|.|.+|||+||+|||+++||+||++|||||++..+.+++.+.++..... ...+.+.|
T Consensus        45 ~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~-~~~~~~~~  123 (187)
T 3i9x_A           45 TLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPR-GWIISRAF  123 (187)
T ss_dssp             EEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTT-SSEEEEEE
T ss_pred             CCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCC-CCEEEEEE
Confidence            35899999942        4578999999999999999999999999999999999999998776653332 23455666


Q ss_pred             EEEee
Q 020612          305 YAYAK  309 (323)
Q Consensus       305 ~a~~~  309 (323)
                      ++.+.
T Consensus       124 ~~~~~  128 (187)
T 3i9x_A          124 YAIVP  128 (187)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            66544

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.57  E-value=1.8e-14  Score=119.35  Aligned_cols=93  Identities=22%  Similarity=0.340  Sum_probs=65.0

Q ss_pred             cCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeecc--EEEEEEee---c--
Q 020612          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE--VVYHTSQP---W--  289 (323)
Q Consensus       217 ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~--v~~~gs~~---~--  289 (323)
                      |++. .++.++|++.+++++||+||... +|.|.+|||++|+|||+++||+||++||||+.+..  +.+++...   +  
T Consensus         6 ~~~~-~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   83 (150)
T 2o1c_A            6 YKRP-VSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEI   83 (150)
T ss_dssp             CBCS-EEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEEC
T ss_pred             ccCc-eEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeee
Confidence            4443 35666677654589999998754 68999999999999999999999999999998865  33443221   1  


Q ss_pred             ------CCCCCCCCeeEEEEEEEEeeccC
Q 020612          290 ------PVGPNSMPCQLMVGFYAYAKSFE  312 (323)
Q Consensus       290 ------~~~~~~~~~~lmi~f~a~~~~~~  312 (323)
                            .+. ++..+..++.|.+....+.
T Consensus        84 ~~~~~~~~~-~~~~~~~~~~f~~~~~~~~  111 (150)
T 2o1c_A           84 FSHLRHRYA-PGVTRNTESWFCLALPHER  111 (150)
T ss_dssp             CGGGGGGBC-TTCCEEEEEEEEEEESSCC
T ss_pred             ecccccccC-CCCcceEEEEEEEEcCCCC
Confidence                  111 1123466777777765443

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.56  E-value=1.9e-14  Score=127.62  Aligned_cols=94  Identities=23%  Similarity=0.238  Sum_probs=68.9

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +|++++++.  ++|||+||.+.+  ++.|++|||+||+|||+++||+||++||||+++..+.+++.+....+   .....
T Consensus        51 av~vl~~~~--~~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~  125 (198)
T 1vhz_A           51 AVMIVPIVD--DHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSK  125 (198)
T ss_dssp             EEEEEEEET--TEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCE
T ss_pred             EEEEEEEEC--CEEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCC---ccCcE
Confidence            555555664  399999987643  56899999999999999999999999999999998999888754322   23345


Q ss_pred             EEEEEEEeec-cCCCCCccccc
Q 020612          301 MVGFYAYAKS-FEINVDKEELE  321 (323)
Q Consensus       301 mi~f~a~~~~-~~i~~d~~Eie  321 (323)
                      +..|++.... .....+++|..
T Consensus       126 ~~~f~a~~~~~~~~~~~~~E~~  147 (198)
T 1vhz_A          126 MNIVVAQDLYPESLEGDEPEPL  147 (198)
T ss_dssp             EEEEEEEEEEECCCCCCCSSCC
T ss_pred             EEEEEEEeCCcccCCCCCCceE
Confidence            6667776543 33445555543

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.56  E-value=2.1e-14  Score=119.93  Aligned_cols=86  Identities=19%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             CCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEE--e---ecCCCCCCCCeeEEEE
Q 020612          231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTS--Q---PWPVGPNSMPCQLMVG  303 (323)
Q Consensus       231 ~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs--~---~~~~~~~~~~~~lmi~  303 (323)
                      .++++|||+||.+  +|.|.+|||+||+|||+++||+||++||||+++...  .....  .   .|.+  .+.....++.
T Consensus        17 ~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   92 (149)
T 3son_A           17 EANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSF--NKPYVVPEYC   92 (149)
T ss_dssp             SSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCS--SSCSEEEEEE
T ss_pred             CCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeecc--CCceEeEEEE
Confidence            3457999999986  499999999999999999999999999999988653  22221  1   2222  1123455667


Q ss_pred             EEEEee--ccCCCCCccccc
Q 020612          304 FYAYAK--SFEINVDKEELE  321 (323)
Q Consensus       304 f~a~~~--~~~i~~d~~Eie  321 (323)
                      |.+...  .+++.+ .+|+.
T Consensus        93 f~~~~~~~~~~~~~-~~E~~  111 (149)
T 3son_A           93 FAIDLTSCSYQVTL-SLEHS  111 (149)
T ss_dssp             EEEECTTTGGGCCC-CTTEE
T ss_pred             EEEEcCCCCCcccC-CCcee
Confidence            887776  456665 24443

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.56  E-value=1.4e-14  Score=123.15  Aligned_cols=62  Identities=31%  Similarity=0.484  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHT  285 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~g  285 (323)
                      +++++|++. +++|||+||..   ..+|.|++|||+||+|||+++||+||++||||+++....+++
T Consensus        29 ~~~~~ii~~-~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~   93 (165)
T 3oga_A           29 TIVCPLIQN-DGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITP   93 (165)
T ss_dssp             EEEEEEEEE-TTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             EEEEEEEeC-CCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceee
Confidence            344444444 58999998874   346899999999999999999999999999999987665543

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.56  E-value=9.8e-15  Score=128.27  Aligned_cols=89  Identities=31%  Similarity=0.418  Sum_probs=67.2

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC--CeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM--PCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~--~~~l  300 (323)
                      +++++|.+  +++|||+||.+  .|.|.+|||+||+|||+++||+||++||||+++....+++.+.+.+.....  ....
T Consensus         6 v~~~vi~~--~~~vLL~~r~~--~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (188)
T 3fk9_A            6 VTNCIVVD--HDQVLLLQKPR--RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM   81 (188)
T ss_dssp             EEEEEEEE--TTEEEEEECTT--TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEE--CCEEEEEEeCC--CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence            45555555  58999999864  789999999999999999999999999999999988888887665432211  1126


Q ss_pred             EEEEEEEeeccCCCC
Q 020612          301 MVGFYAYAKSFEINV  315 (323)
Q Consensus       301 mi~f~a~~~~~~i~~  315 (323)
                      ++.|.+....+.+..
T Consensus        82 ~~~f~a~~~~~~~~~   96 (188)
T 3fk9_A           82 LFTFKATEHEGEMLK   96 (188)
T ss_dssp             EEEEEESCEESCCCS
T ss_pred             EEEEEEECCCCCCcC
Confidence            677777655555443

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.56  E-value=1.4e-14  Score=120.05  Aligned_cols=92  Identities=22%  Similarity=0.126  Sum_probs=66.1

Q ss_pred             CCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec-CCCCCCC
Q 020612          218 PRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW-PVGPNSM  296 (323)
Q Consensus       218 pr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~-~~~~~~~  296 (323)
                      ++..+.+.++|++.++++|||+||.   .|.|++|||++|+|||+++||+||++||||+.+..+.+++.+.. .+.....
T Consensus        15 ~~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2azw_A           15 YQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQ   91 (148)
T ss_dssp             CEECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTT
T ss_pred             eeeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCC
Confidence            3345566677777545899999974   48999999999999999999999999999999988888776531 1111111


Q ss_pred             --CeeEEEEEEEEeeccC
Q 020612          297 --PCQLMVGFYAYAKSFE  312 (323)
Q Consensus       297 --~~~lmi~f~a~~~~~~  312 (323)
                        ....++.|.+....+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~  109 (148)
T 2azw_A           92 TAYYNPGYFYVANTWRQL  109 (148)
T ss_dssp             EEEEEEEEEEEEEEEEEC
T ss_pred             cceEEEEEEEEEEcCcCC
Confidence              2234566766655433

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.56  E-value=8.3e-15  Score=132.64  Aligned_cols=98  Identities=24%  Similarity=0.294  Sum_probs=69.2

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCC---------------------------------CCcccceeeecCC-CCCHHHHH
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFV---------------------------------PRMWSCIAGFIEP-GESLEEAV  266 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~---------------------------------~g~w~lPgG~VE~-GEs~eeAa  266 (323)
                      ..+|.+++++..++++||+||.+++                                 ++.|++|||+||+ |||+++||
T Consensus        36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA  115 (218)
T 3q91_A           36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA  115 (218)
T ss_dssp             CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred             CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence            4566777777656899999987632                                 5689999999999 99999999


Q ss_pred             HHHHHHHhCCee--ccEEEEEEeecCCCCCCCCeeEEEEEEEEeec------cCCCCCccccc
Q 020612          267 RRETWEETGIEV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS------FEINVDKEELE  321 (323)
Q Consensus       267 ~REv~EEtGL~v--~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~------~~i~~d~~Eie  321 (323)
                      +||++||||+++  ..+.+++.+....+   +....+..|++....      +...++++|+.
T Consensus       116 ~REl~EEtGl~~~~~~l~~l~~~~~~~g---~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~  175 (218)
T 3q91_A          116 CKEAWEECGYHLAPSDLRRVATYWSGVG---LTGSRQTMFYTEVTDAQRSGPGGGLVEEGELI  175 (218)
T ss_dssp             HHHHHHHHCBCCCGGGCEEEEEEEEC------CCEEEEEEEEEECGGGBCC---------CCE
T ss_pred             HHHHHHHhCCccccCceEEEEEEecCCC---ccceEEEEEEEEECCcccccCCCCCCCCCcEE
Confidence            999999999998  88888887543221   234677778887653      22344555554

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.55  E-value=1.5e-14  Score=124.77  Aligned_cols=95  Identities=22%  Similarity=0.267  Sum_probs=70.6

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~  297 (323)
                      .++.++|++. +++|||++|..   ..+|.|.+ |||++|+|||+++||+||++||||+.+..+.+++.+.+...   ..
T Consensus        38 ~~~~v~i~~~-~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~---~~  113 (180)
T 2fkb_A           38 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDK---NC  113 (180)
T ss_dssp             EEEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEET---TE
T ss_pred             eEEEEEEECC-CCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCC---Cc
Confidence            3556666664 57899988864   24789999 99999999999999999999999999888888887665432   13


Q ss_pred             eeEEEEEEEEeeccCCCCCccccc
Q 020612          298 CQLMVGFYAYAKSFEINVDKEELE  321 (323)
Q Consensus       298 ~~lmi~f~a~~~~~~i~~d~~Eie  321 (323)
                      ...+..|.+. ..+.+.++.+|+.
T Consensus       114 ~~~~~~f~~~-~~~~~~~~~~E~~  136 (180)
T 2fkb_A          114 RVWGALFSCV-SHGPFALQEDEVS  136 (180)
T ss_dssp             EEEEEEEEEE-CCCCCCCCTTTEE
T ss_pred             eEEEEEEEEe-cCCCcCCChhHhh
Confidence            3455666666 3455666666654

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.54  E-value=2.2e-14  Score=121.30  Aligned_cols=90  Identities=24%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             CCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC-CCCCeeEEEEEEEEee
Q 020612          231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP-NSMPCQLMVGFYAYAK  309 (323)
Q Consensus       231 ~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~-~~~~~~lmi~f~a~~~  309 (323)
                      .++.++||+++++ .++.|.+|||+||+|||+++||+||++||||+++.....++.+.+.... ..........|++...
T Consensus        21 n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (155)
T 3u53_A           21 NNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVK   99 (155)
T ss_dssp             SCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEEEEEe
Confidence            3457899998874 4578999999999999999999999999999998877766654332111 1112344455666655


Q ss_pred             ccCCCC-Cccccc
Q 020612          310 SFEINV-DKEELE  321 (323)
Q Consensus       310 ~~~i~~-d~~Eie  321 (323)
                      ..+..+ ..+|+.
T Consensus       100 ~~~~~~~~~~E~~  112 (155)
T 3u53_A          100 DYDVEIRLSHEHQ  112 (155)
T ss_dssp             CTTCCCCCCTTEE
T ss_pred             ccCCccCCCccee
Confidence            443332 233544

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.54  E-value=2.6e-14  Score=125.83  Aligned_cols=90  Identities=29%  Similarity=0.363  Sum_probs=67.5

Q ss_pred             ccCCcccEEEEEEEeCCCCeEEEEeeccC--------CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe
Q 020612          216 IYPRVDPVVIMLVIDRENDRVLLSRQSRF--------VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ  287 (323)
Q Consensus       216 ~ypr~~pvVivlV~~~~~~riLL~rr~~~--------~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~  287 (323)
                      .+++.+ +|.+++++.+++++||+|+.+.        .++.|++|||+|| |||+++||+||++||||+++..+.+++.+
T Consensus        41 ~~~~~~-av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~  118 (191)
T 3o6z_A           41 VYDRGN-GATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL  118 (191)
T ss_dssp             EEECCC-EEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE
T ss_pred             EEecCC-EEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE
Confidence            445444 5556666655689999998763        4678999999999 99999999999999999999999999875


Q ss_pred             ecCCCCCCCCeeEEEEEEEEeec
Q 020612          288 PWPVGPNSMPCQLMVGFYAYAKS  310 (323)
Q Consensus       288 ~~~~~~~~~~~~lmi~f~a~~~~  310 (323)
                      ....+   .....+..|++....
T Consensus       119 ~~~~~---~~~~~~~~f~~~~~~  138 (191)
T 3o6z_A          119 YMSPG---GVTELIHFFIAEYSD  138 (191)
T ss_dssp             ESCTT---TBCCEEEEEEEECCT
T ss_pred             EeCCC---ccCcEEEEEEEEEcc
Confidence            43221   234566778877653

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.54  E-value=3.5e-14  Score=125.09  Aligned_cols=54  Identities=17%  Similarity=0.326  Sum_probs=47.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE  277 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~  277 (323)
                      .++.++|++.++++|||+|+..  .|.|.+|||+||+|||+++||+||++||||++
T Consensus        46 ~~~~~vv~~~~~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~   99 (197)
T 3fcm_A           46 LTSSAFAVNKERNKFLMIHHNI--YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK   99 (197)
T ss_dssp             EEEEEEEECTTSCEEEEEEETT--TTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred             EEEEEEEEECCCCEEEEEEecC--CCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence            3566677776656999999874  68999999999999999999999999999997

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.53  E-value=2.2e-14  Score=119.42  Aligned_cols=85  Identities=25%  Similarity=0.291  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEE
Q 020612          224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLM  301 (323)
Q Consensus       224 VivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lm  301 (323)
                      ++++|++. +++|||++|..  ..+|.|++|||++|+||++++||+||++||||+.+....+++...+.+..   ....+
T Consensus        24 ~~~~i~~~-~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~   99 (153)
T 3ees_A           24 VVAGFLRK-DGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGD---VGILI   99 (153)
T ss_dssp             EEEEEEEE-TTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETT---EEEEE
T ss_pred             EEEEEEEE-CCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCC---CeEEE
Confidence            33444443 58999999875  35689999999999999999999999999999999888888776555422   23445


Q ss_pred             EEEEEEeeccC
Q 020612          302 VGFYAYAKSFE  312 (323)
Q Consensus       302 i~f~a~~~~~~  312 (323)
                      +.|.+....+.
T Consensus       100 ~~~~~~~~~~~  110 (153)
T 3ees_A          100 LFYEILYWKGE  110 (153)
T ss_dssp             EEEEECEEESC
T ss_pred             EEEEEEECCCC
Confidence            56666554443

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.53  E-value=4.3e-14  Score=125.18  Aligned_cols=74  Identities=23%  Similarity=0.205  Sum_probs=59.3

Q ss_pred             eCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEee
Q 020612          230 DRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAK  309 (323)
Q Consensus       230 ~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~  309 (323)
                      +..+++|||+||.+. +|.|++|||+||+|||+++||+||++||||+++..+.+++.+.+..     ....+..|++.+.
T Consensus        50 ~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~-----~~~~~~~f~~~~~  123 (194)
T 2fvv_A           50 SESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE-----RKHRTYVYVLIVT  123 (194)
T ss_dssp             STTCCEEEEEECSSC-TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT-----TTEEEEEEEEEEE
T ss_pred             ECCCCEEEEEEEeCC-CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC-----CceEEEEEEEEEc
Confidence            344689999998753 5899999999999999999999999999999999888888877542     2234555666543

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.52  E-value=4.6e-14  Score=116.67  Aligned_cols=88  Identities=25%  Similarity=0.275  Sum_probs=63.4

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNSM  296 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs~~~~~~~~~~  296 (323)
                      ..++.++|++. +++|||+||..  ..+|.|++|||++|+||++++|++||++||||+.+...  ..++...+.+..   
T Consensus         8 ~~~~~~vi~~~-~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~---   83 (144)
T 3r03_A            8 LLVTAAALIDP-DGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDT---   83 (144)
T ss_dssp             EEEEEEEEBCT-TSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS---
T ss_pred             eEEEEEEEEcC-CCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC---
Confidence            34555555554 58999999874  35789999999999999999999999999999998765  444444444321   


Q ss_pred             CeeEEEEEEEEeeccC
Q 020612          297 PCQLMVGFYAYAKSFE  312 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~  312 (323)
                      ....+..|.+....+.
T Consensus        84 ~~~~~~~~~~~~~~~~   99 (144)
T 3r03_A           84 FHLLMPLYACRSWRGR   99 (144)
T ss_dssp             SEEEEEEEEECCCBSC
T ss_pred             eEEEEEEEEEEecCCc
Confidence            3455666666554443

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.52  E-value=4.1e-14  Score=116.21  Aligned_cols=76  Identities=25%  Similarity=0.298  Sum_probs=59.4

Q ss_pred             CCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeec
Q 020612          233 NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKS  310 (323)
Q Consensus       233 ~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~  310 (323)
                      +++|||+||..  ..+|.|++|||++|+||++++|++||++||||+.+....+++...+.+..   ....+..|.+....
T Consensus        19 ~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   95 (140)
T 2rrk_A           19 DGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSG---RIIHLHAWHVPDFH   95 (140)
T ss_dssp             TTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETT---EEEEEEEEEESEEE
T ss_pred             CCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCC---cEEEEEEEEEEeeC
Confidence            58999999864  34689999999999999999999999999999999888888876655421   22345566665443


Q ss_pred             c
Q 020612          311 F  311 (323)
Q Consensus       311 ~  311 (323)
                      +
T Consensus        96 ~   96 (140)
T 2rrk_A           96 G   96 (140)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.52  E-value=1.2e-13  Score=118.49  Aligned_cols=66  Identities=32%  Similarity=0.493  Sum_probs=57.3

Q ss_pred             cccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEee
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP  288 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~  288 (323)
                      ..++|.++|++. +++|||++|.+  +|.|.+|||++|+|||+++||+||++||||+++..+.+++.+.
T Consensus         7 ~~~~v~~~i~~~-~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~   72 (164)
T 2kdv_A            7 YRPNVGIVICNR-QGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTR   72 (164)
T ss_dssp             EEEEEEEEEECT-TSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECS
T ss_pred             CCcEEEEEEEcc-CCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEec
Confidence            345677777775 58999999875  7899999999999999999999999999999999888888753

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.52  E-value=8.8e-14  Score=129.53  Aligned_cols=100  Identities=24%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             CCCcccCCcccEEEEEEEeCC----CCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCee--ccEEEE
Q 020612          212 CKKRIYPRVDPVVIMLVIDRE----NDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV--GEVVYH  284 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~~~~----~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v--~~v~~~  284 (323)
                      |....|++...+|.++|+...    +++|||++|.+ ...|.|.+|||+||+|||+++||+||++||||+++  ..+..+
T Consensus        30 ~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l  109 (273)
T 2fml_A           30 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  109 (273)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             hhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence            444557776666666665422    34899999976 34689999999999999999999999999999765  456777


Q ss_pred             EEeecCCCCCCCCeeEEEEEEEEeeccC
Q 020612          285 TSQPWPVGPNSMPCQLMVGFYAYAKSFE  312 (323)
Q Consensus       285 gs~~~~~~~~~~~~~lmi~f~a~~~~~~  312 (323)
                      +++..+..... ...+.+.|++.+....
T Consensus       110 ~~~~~~~r~~~-~~~~~~~y~a~~~~~~  136 (273)
T 2fml_A          110 HSFSRPDRDPR-GWVVTVSYLAFIGEEP  136 (273)
T ss_dssp             EEECCTTSSTT-SSEEEEEEEEECCCCC
T ss_pred             EEEcCCCCCCC-ceEEEEEEEEEeCCCC
Confidence            76654432221 2357778888765443

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.51  E-value=2e-14  Score=125.58  Aligned_cols=98  Identities=19%  Similarity=0.331  Sum_probs=69.5

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccE-EEEEEeecCCC-CCCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEV-VYHTSQPWPVG-PNSM  296 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v-~~~gs~~~~~~-~~~~  296 (323)
                      +|.++|++. +++|||+||..   ..+|.|++ |||+||+|||+++||+||++||||+++..+ .+++.+.+... .++.
T Consensus        34 ~v~~~i~~~-~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 1hzt_A           34 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI  112 (190)
T ss_dssp             CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEcC-CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence            455666664 57999999864   24799999 999999999999999999999999999887 77765543211 1111


Q ss_pred             -CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          297 -PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       297 -~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                       ...++..|.+... +++.++++|+.+
T Consensus       113 ~~~~~~~~f~~~~~-~~~~~~~~E~~~  138 (190)
T 1hzt_A          113 VENEVCPVFAARTT-SALQINDDEVMD  138 (190)
T ss_dssp             EEEEECCEEEEEBC-SCCCCCTTTEEE
T ss_pred             cceEEEEEEEEecC-CCCcCCccceee
Confidence             2345566666643 456666666543

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.51  E-value=3.1e-14  Score=126.74  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=66.8

Q ss_pred             cccEEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecC-CCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE-~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~  296 (323)
                      ...+|.+++++. +++|||+||.+.+  .+.|++|||+|| +|||+++||+||++||||+++..+.+++.+ +...  +.
T Consensus        42 ~~~av~v~i~~~-~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~-~~~~--~~  117 (207)
T 1mk1_A           42 HFGAVAIVAMDD-NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDL-DTAP--GF  117 (207)
T ss_dssp             ECCEEEEEECCT-TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE-CSCT--TT
T ss_pred             CCCEEEEEEEcC-CCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEE-EcCC--Cc
Confidence            344666666664 6899999987643  569999999999 999999999999999999999988888876 3322  22


Q ss_pred             CeeEEEEEEEEeeccCCC---CCccccc
Q 020612          297 PCQLMVGFYAYAKSFEIN---VDKEELE  321 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i~---~d~~Eie  321 (323)
                      ....+..|++........   .+++|+.
T Consensus       118 ~~~~~~~f~~~~~~~~~~~~~~~~~E~~  145 (207)
T 1mk1_A          118 SDESVRVYLATGLREVGRPEAHHEEADM  145 (207)
T ss_dssp             BCCCEEEEEEEEEEECCC----------
T ss_pred             cccEEEEEEEEccccCCCCCCCCCCceE
Confidence            233556677765433222   3455544

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.51  E-value=3.5e-14  Score=119.87  Aligned_cols=88  Identities=25%  Similarity=0.292  Sum_probs=62.9

Q ss_pred             cccEEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE--EEEEEeecCCCCCC
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV--VYHTSQPWPVGPNS  295 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v--~~~gs~~~~~~~~~  295 (323)
                      ...++.++|++. +++|||+||..  ..+|.|++|||++|+||++++||+||++||||+.+...  ..++...+.+..  
T Consensus        28 ~~~~~~~~i~~~-~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~--  104 (158)
T 3hhj_A           28 LLIVVACALLDQ-DNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYET--  104 (158)
T ss_dssp             EEEEEEEEEBCT-TSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS--
T ss_pred             eEEEEEEEEEeC-CCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCC--
Confidence            334555555554 58999999874  35789999999999999999999999999999998765  335544444321  


Q ss_pred             CCeeEEEEEEEEeecc
Q 020612          296 MPCQLMVGFYAYAKSF  311 (323)
Q Consensus       296 ~~~~lmi~f~a~~~~~  311 (323)
                       ....+..|.+....+
T Consensus       105 -~~~~~~~~~~~~~~~  119 (158)
T 3hhj_A          105 -FHLLMPLYFCSHYKG  119 (158)
T ss_dssp             -CEEEEEEEEESCCBS
T ss_pred             -cEEEEEEEEEEECCC
Confidence             234555666654444

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.51  E-value=2.8e-14  Score=119.79  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=60.9

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC-eeEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP-CQLM  301 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~-~~lm  301 (323)
                      ++.++|++  +++|||+||    +|.|.+|||++++|||+++||+||++||||+++...++++...+.+...+.. +.+.
T Consensus        21 ~~~~ii~~--~~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (154)
T 2pqv_A           21 RATALIVQ--NHKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIE   94 (154)
T ss_dssp             EEEECCEE--TTEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEE--CCEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEE
Confidence            44555555  589999998    5899999999999999999999999999999998777776654433222111 2344


Q ss_pred             EEEEEEeecc
Q 020612          302 VGFYAYAKSF  311 (323)
Q Consensus       302 i~f~a~~~~~  311 (323)
                      +.|.+....+
T Consensus        95 ~~f~~~~~~~  104 (154)
T 2pqv_A           95 FHYLVDLLED  104 (154)
T ss_dssp             EEEEEEESSC
T ss_pred             EEEEEEecCC
Confidence            5666665543

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.50  E-value=5.3e-14  Score=118.49  Aligned_cols=60  Identities=27%  Similarity=0.460  Sum_probs=50.5

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV  282 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~  282 (323)
                      ..++.++|++. +++|||+||.+. +|.|++|||+||+|||+++||+||++||||+++..+.
T Consensus        14 ~~~v~~~i~~~-~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~   73 (165)
T 1f3y_A           14 RRNVGICLMNN-DKKIFAASRLDI-PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI   73 (165)
T ss_dssp             CCEEEEEEECT-TSCEEEEEETTE-EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEE
T ss_pred             eeeEEEEEECC-CCcEEEEecCCC-CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhh
Confidence            45666777775 589999998753 4899999999999999999999999999999876443

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.50  E-value=7.6e-14  Score=124.67  Aligned_cols=87  Identities=23%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             cccEEEEEEEeCC--CCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCC
Q 020612          220 VDPVVIMLVIDRE--NDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNS  295 (323)
Q Consensus       220 ~~pvVivlV~~~~--~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~  295 (323)
                      .+.++++.++...  +++|||++|.+.+  ++.|++|||+||+||++++||+||++||||+++..+.+++......   +
T Consensus        61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~---~  137 (212)
T 2dsc_A           61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDP---G  137 (212)
T ss_dssp             CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCT---T
T ss_pred             CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCC---C
Confidence            3445555554432  3589999986643  4589999999999999999999999999999988777766542211   1


Q ss_pred             CCeeEEEEEEEEee
Q 020612          296 MPCQLMVGFYAYAK  309 (323)
Q Consensus       296 ~~~~lmi~f~a~~~  309 (323)
                      +....+..|++.+.
T Consensus       138 ~~~~~~~~~~a~~~  151 (212)
T 2dsc_A          138 LSNCTIHIVTVTIN  151 (212)
T ss_dssp             TBCCEEEEEEEEEE
T ss_pred             ccCceEEEEEEEEe
Confidence            23345666776654

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.50  E-value=2.2e-14  Score=119.23  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=50.2

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV  281 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v  281 (323)
                      .+++.++|++.++++|||+|+..  .|.|.+|||++++|||+++||+||++||||+++..+
T Consensus         4 i~~~~~~i~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   62 (146)
T 2jvb_A            4 IPVRGAAIFNENLSKILLVQGTE--SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDY   62 (146)
T ss_dssp             SCCEEEEEBCTTSSEEEEECCSS--SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSS
T ss_pred             eEEEEEEEEeCCCCEEEEEEEcC--CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHh
Confidence            34566677775458999999865  689999999999999999999999999999988654

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.47  E-value=1.8e-14  Score=116.61  Aligned_cols=82  Identities=20%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             EEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEE
Q 020612          226 MLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVG  303 (323)
Q Consensus       226 vlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~  303 (323)
                      ++|++. +++|||+||.+  ..+|.|++|||++++|||+++|++||++||||+.+..+.+++...+.+..   ....+..
T Consensus         9 ~ii~~~-~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~---~~~~~~~   84 (129)
T 1mut_A            9 GIIRNE-NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPD---RHITLWF   84 (129)
T ss_dssp             EECEET-TTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSS---CEEECCC
T ss_pred             EEEEec-CCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCC---ceEEEEE
Confidence            334454 58999999875  35789999999999999999999999999999998877777766554422   2233455


Q ss_pred             EEEEeecc
Q 020612          304 FYAYAKSF  311 (323)
Q Consensus       304 f~a~~~~~  311 (323)
                      |.+....+
T Consensus        85 ~~~~~~~~   92 (129)
T 1mut_A           85 WLVERWEG   92 (129)
T ss_dssp             EEEEECSS
T ss_pred             EEEEccCC
Confidence            66665443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.47  E-value=1.5e-13  Score=115.23  Aligned_cols=90  Identities=20%  Similarity=0.256  Sum_probs=64.9

Q ss_pred             CCcccEEEEEEEeCCCCe----EEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCC
Q 020612          218 PRVDPVVIMLVIDRENDR----VLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVG  292 (323)
Q Consensus       218 pr~~pvVivlV~~~~~~r----iLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~  292 (323)
                      +....++.++|.+  +++    |||++|... ++| |.+|||++|+|||+++||+||++||||+++....+++...+...
T Consensus         5 ~~~~~~~~~ii~~--~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   81 (155)
T 2b06_A            5 QLTILTNICLIED--LETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD   81 (155)
T ss_dssp             GCEEEEEEEEEEE--TTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT
T ss_pred             cCcEEEEEEEEEE--CCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccC
Confidence            3445566777776  355    888887653 355 89999999999999999999999999999988888888766542


Q ss_pred             CCCCCeeEEEEEEEEeeccC
Q 020612          293 PNSMPCQLMVGFYAYAKSFE  312 (323)
Q Consensus       293 ~~~~~~~lmi~f~a~~~~~~  312 (323)
                      . + ....++.|.+....+.
T Consensus        82 ~-~-~~~~~~~~~~~~~~~~   99 (155)
T 2b06_A           82 T-G-GRYIVICYKATEFSGT   99 (155)
T ss_dssp             T-S-CEEEEEEEEECEEEEC
T ss_pred             C-C-ceEEEEEEEEEecCCC
Confidence            2 1 3456667777654443

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.47  E-value=3.7e-14  Score=132.22  Aligned_cols=65  Identities=25%  Similarity=0.366  Sum_probs=54.4

Q ss_pred             cCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEE
Q 020612          217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV  282 (323)
Q Consensus       217 ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~  282 (323)
                      |....+++.++|++.++++|||+||.+. +|.|.+|||+||+|||+++||+||++||||+++..+.
T Consensus        97 ~~~~v~~v~avv~~~~~~~vLLv~r~~~-~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~  161 (271)
T 2a6t_A           97 YKTRIPVRGAIMLDMSMQQCVLVKGWKA-SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRI  161 (271)
T ss_dssp             HSCCCCEEEEEEBCSSSSEEEEEEESST-TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTC
T ss_pred             cCCCCCeEEEEEEECCCCEEEEEEEeCC-CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeee
Confidence            4444567777777765589999999763 5899999999999999999999999999999987643

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.44  E-value=2.1e-13  Score=115.37  Aligned_cols=58  Identities=34%  Similarity=0.477  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYH  284 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~  284 (323)
                      ++.++|++  +++|||+|+.+  .|.|.+|||++|+|||+++|++||++||||+++....++
T Consensus         3 ~~~~vi~~--~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~   60 (156)
T 1k2e_A            3 VTSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT   60 (156)
T ss_dssp             EEEEECEE--TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCC
T ss_pred             EEEEEEEE--CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccce
Confidence            44555666  68999999875  689999999999999999999999999999998665543

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.43  E-value=1.3e-13  Score=124.48  Aligned_cols=86  Identities=23%  Similarity=0.339  Sum_probs=60.4

Q ss_pred             EEEEeCCCCeEEEEeeccCC-----CCcccc-eeeecCCCCC------HHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          226 MLVIDRENDRVLLSRQSRFV-----PRMWSC-IAGFIEPGES------LEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       226 vlV~~~~~~riLL~rr~~~~-----~g~w~l-PgG~VE~GEs------~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      ++|+.. +++|||++|...+     .|.|++ |||+||+|||      +++|++||++|||||++....+++...|...+
T Consensus        72 ~~II~~-~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~  150 (211)
T 3e57_A           72 YVVIMD-GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTE  150 (211)
T ss_dssp             EEEEEE-TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSH
T ss_pred             EEEEEE-CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCC
Confidence            333443 6899999997532     378998 9999999998      49999999999999999999999998875322


Q ss_pred             CCCCeeEEEEEEEEeeccCC
Q 020612          294 NSMPCQLMVGFYAYAKSFEI  313 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~~~~i  313 (323)
                      .+ ...+++.|.+....+.+
T Consensus       151 ~~-~~~l~~~f~~~~~~g~~  169 (211)
T 3e57_A          151 VS-RVHLGALFLGRGKFFSV  169 (211)
T ss_dssp             HH-HTEEEEEEEEEEEEEEE
T ss_pred             CC-eEEEEEEEEEEeCCcee
Confidence            21 22455567777654443

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.39  E-value=7.8e-13  Score=111.36  Aligned_cols=87  Identities=11%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             EEEEEEEeCC--CCeEEEEeecc--CCCCcccceeeecCCCCCHH-HHHHHHHHHHhC-CeeccEEEEEEeecCCCCCCC
Q 020612          223 VVIMLVIDRE--NDRVLLSRQSR--FVPRMWSCIAGFIEPGESLE-EAVRRETWEETG-IEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       223 vVivlV~~~~--~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~e-eAa~REv~EEtG-L~v~~v~~~gs~~~~~~~~~~  296 (323)
                      .++++|.+..  +++|||+||..  ...|+|+||||.+|+||+++ +|++||++|||| +.+..+.+++...+.+..   
T Consensus        21 ~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~---   97 (155)
T 1x51_A           21 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH---   97 (155)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCC---
Confidence            3444455432  47999999874  45689999999999999997 999999999999 888777777766555432   


Q ss_pred             CeeEEEEEEEEeeccC
Q 020612          297 PCQLMVGFYAYAKSFE  312 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~  312 (323)
                      ....+..|.+....+.
T Consensus        98 ~~~~~~~~~~~~~~~~  113 (155)
T 1x51_A           98 IKLTYQVYGLALEGQT  113 (155)
T ss_dssp             CEEEEEEEEEECSSCC
T ss_pred             ccEEEEEEEEEEcCCC
Confidence            2234556766655443

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.38  E-value=7.8e-13  Score=127.36  Aligned_cols=78  Identities=23%  Similarity=0.242  Sum_probs=56.9

Q ss_pred             CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC----------CeeEE
Q 020612          232 ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM----------PCQLM  301 (323)
Q Consensus       232 ~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~----------~~~lm  301 (323)
                      ++.+|||++|.+  .|.|++|||+||+|||+++||+||++||||+++....+++...+.+...+.          ....+
T Consensus        36 ~~~~vLLv~r~~--~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~  113 (364)
T 3fjy_A           36 DSIEVCIVHRPK--YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHT  113 (364)
T ss_dssp             TTEEEEEEEETT--TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CE
T ss_pred             CceEEEEEEcCC--CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEE
Confidence            456999999865  589999999999999999999999999999999888888877666543211          13455


Q ss_pred             EEEEEEeecc
Q 020612          302 VGFYAYAKSF  311 (323)
Q Consensus       302 i~f~a~~~~~  311 (323)
                      ..|.+....+
T Consensus       114 ~~f~~~~~~~  123 (364)
T 3fjy_A          114 LYWMAQPISA  123 (364)
T ss_dssp             EEEEEEECCH
T ss_pred             EEEEEEecCC
Confidence            6666666543

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.36  E-value=2.7e-13  Score=121.56  Aligned_cols=82  Identities=21%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCeeccEE-----EEEEeecCCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEVGEVV-----YHTSQPWPVGPN  294 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v~~v~-----~~gs~~~~~~~~  294 (323)
                      ..++++++++. +++|||+||.   +|.|++|||+||+|| |+++||+||++||||+.+..+.     ++++..+.+.  
T Consensus        44 ~~~vv~~i~~~-~~~vLl~~r~---~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~--  117 (212)
T 1u20_A           44 SQAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP--  117 (212)
T ss_dssp             CCCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT--
T ss_pred             CceEEEEEEec-CCEEEEEEeC---CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC--
Confidence            34555555554 5789998883   689999999999999 9999999999999999987543     6777665542  


Q ss_pred             CCCeeEEEEEEEEeec
Q 020612          295 SMPCQLMVGFYAYAKS  310 (323)
Q Consensus       295 ~~~~~lmi~f~a~~~~  310 (323)
                        ....++.|.+....
T Consensus       118 --~~~~~~~f~~~~~~  131 (212)
T 1u20_A          118 --QKCVTHFYIKELKL  131 (212)
T ss_dssp             --SCEEEEEEEEECCH
T ss_pred             --CcEEEEEEEEEecC
Confidence              23566777776553

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.30  E-value=1.3e-12  Score=117.91  Aligned_cols=95  Identities=21%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCcccCCcccEEE-EEEEeCCCCeEEEEeeccCCCCcccceeeecCCCC-CHHHHHHHHHHHHhCCee
Q 020612          201 AGKLKQCSNASCKKRIYPRVDPVVI-MLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGIEV  278 (323)
Q Consensus       201 ~g~~~~C~~~~C~~~~ypr~~pvVi-vlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL~v  278 (323)
                      .||...     |+...|+ ..+.++ +++...  +++||..|.   +|.|++|||+||+|| |+++||+||++||||+++
T Consensus        39 ~g~~~~-----~~~~~~~-~~~~~v~~vi~~~--~~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~  107 (217)
T 2xsq_A           39 SGWRHV-----CHALLYA-PDPGMLFGRIPLR--YAILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAA  107 (217)
T ss_dssp             TTCEEE-----EEEEEEE-EEEEEETTTEEEE--EEEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGG
T ss_pred             CCceeE-----eeeEEEc-CCCcEEEEEEEee--CcEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCC
Confidence            455554     4456665 344444 222221  345655544   589999999999999 999999999999999987


Q ss_pred             cc-----EEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612          279 GE-----VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (323)
Q Consensus       279 ~~-----v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~  311 (323)
                      ..     +.++.+.+...     +..+++.|.+....+
T Consensus       108 ~~~~l~~l~~~~~~~~~~-----~~~~~~~f~~~l~~~  140 (217)
T 2xsq_A          108 AAFRVERTDYRSSHVGSG-----PRVVAHFYAKRLTLE  140 (217)
T ss_dssp             GGCCCCGGGEEEEEECSS-----SSEEEEEEEEECCHH
T ss_pred             ccceeEEEEEEeecCCCC-----CeEEEEEEEEEeccc
Confidence            62     24555544332     356777777766543

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.25  E-value=1.9e-11  Score=111.60  Aligned_cols=99  Identities=15%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCC------CC---HHHHHHHHHHHHhCCeec-----cEEE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPG------ES---LEEAVRRETWEETGIEVG-----EVVY  283 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~G------Es---~eeAa~REv~EEtGL~v~-----~v~~  283 (323)
                      .++.++|++. +++|||+||+.   ..+|+|++| ||++++|      |+   +++||+||++|||||.+.     .+.+
T Consensus        60 ~av~v~v~~~-~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~  138 (235)
T 2dho_A           60 RAFSVFLFNT-ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINY  138 (235)
T ss_dssp             EEEEEEEECT-TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEE
T ss_pred             EEEEEEEEcC-CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEE
Confidence            3566677775 57999999864   458999998 5999999      88   599999999999999865     4678


Q ss_pred             EEEeecCCCCCCC--CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       284 ~gs~~~~~~~~~~--~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ++.+.|.....+.  .+.+...|.+.. .+++.++++|+.+
T Consensus       139 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~  178 (235)
T 2dho_A          139 LTRIHYKAQSDGIWGEHEIDYILLVRM-NVTLNPDPNEIKS  178 (235)
T ss_dssp             EEEEEEEEECSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEE
T ss_pred             EEEEEEeccCCCccceeEEEEEEEEEE-CCCCcCChHHEEE
Confidence            8776554321111  123455666654 4567777778754

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.25  E-value=1.8e-11  Score=112.57  Aligned_cols=99  Identities=14%  Similarity=0.216  Sum_probs=70.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCccccee-eecCCC------CCH---HHHHHHHHHHHhCCeec-----cEEE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIA-GFIEPG------ESL---EEAVRRETWEETGIEVG-----EVVY  283 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPg-G~VE~G------Es~---eeAa~REv~EEtGL~v~-----~v~~  283 (323)
                      .++.++|++. +++|||+||+.   ..+|+|++|+ |++++|      |++   ++||+||++|||||.+.     .+.+
T Consensus        71 ~av~v~v~~~-~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~  149 (246)
T 2pny_A           71 RAFSVVLFNT-KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVF  149 (246)
T ss_dssp             EEEEEEEECT-TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEE
T ss_pred             EEEEEEEEeC-CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEE
Confidence            4566677775 57999999864   4589999985 999999      887   99999999999999865     3677


Q ss_pred             EEEeecCCCCCCC--CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          284 HTSQPWPVGPNSM--PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       284 ~gs~~~~~~~~~~--~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ++.+.|.....+.  .+.+...|++.. .+++.++++|+.+
T Consensus       150 l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~  189 (246)
T 2pny_A          150 MTIYHHKAKSDRIWGEHEICYLLLVRK-NVTLNPDPSETKS  189 (246)
T ss_dssp             EEEEEEEEESSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEE
T ss_pred             EEEEEEEecCCCceeeeEEEEEEEEEE-CCCCCCChHHeeE
Confidence            7776543211111  123455666654 4567777788764

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.10  E-value=8.9e-11  Score=113.67  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +++++|.+ .+++|||+||..  ..+|+|+||||++|+| |+++|++||++||||+++....+++...+.+..   ....
T Consensus       242 ~~~~vi~~-~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h---~~~~  316 (369)
T 3fsp_A          242 LAVAVLAD-DEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSH---LVWQ  316 (369)
T ss_dssp             EEEEEEEC-SSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSS---EEEE
T ss_pred             EEEEEEEe-CCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcce---EEEE
Confidence            34444454 468999999974  4679999999999999 999999999999999998777777766555432   2345


Q ss_pred             EEEEEEEeec
Q 020612          301 MVGFYAYAKS  310 (323)
Q Consensus       301 mi~f~a~~~~  310 (323)
                      +..|.+....
T Consensus       317 ~~~~~~~~~~  326 (369)
T 3fsp_A          317 LTVFPGRLVH  326 (369)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEcC
Confidence            5666666543

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.09  E-value=5.3e-10  Score=105.11  Aligned_cols=41  Identities=22%  Similarity=0.434  Sum_probs=38.5

Q ss_pred             eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCe
Q 020612          235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE  277 (323)
Q Consensus       235 riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~  277 (323)
                      +|||++|..  .|.|.+|||+||+|||+++||+||++||||+.
T Consensus       140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~  180 (292)
T 1q33_A          140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNS  180 (292)
T ss_dssp             EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred             EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence            699999876  58999999999999999999999999999997

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.09  E-value=2.9e-10  Score=107.52  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             cccEEEEEEEeCCC--CeEEEEeecc---CCCCcc-cceeeecCCCCCHHHHHHHHHHHHhCCeec---cEEEEEEeecC
Q 020612          220 VDPVVIMLVIDREN--DRVLLSRQSR---FVPRMW-SCIAGFIEPGESLEEAVRRETWEETGIEVG---EVVYHTSQPWP  290 (323)
Q Consensus       220 ~~pvVivlV~~~~~--~riLL~rr~~---~~~g~w-~lPgG~VE~GEs~eeAa~REv~EEtGL~v~---~v~~~gs~~~~  290 (323)
                      ...+|-+.+++.++  .++||+||+.   .++|+| .++||++++|||+++||+||++||+||.+.   .+.+.+...|.
T Consensus       117 ~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~  196 (300)
T 3dup_A          117 RAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYC  196 (300)
T ss_dssp             CEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEE
T ss_pred             EEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEE
Confidence            34467777777642  2899999973   579999 589999999999999999999999999863   34455544332


Q ss_pred             CC-CCCCCeeEEEEEEEEeec-cCCCCCcccccC
Q 020612          291 VG-PNSMPCQLMVGFYAYAKS-FEINVDKEELEG  322 (323)
Q Consensus       291 ~~-~~~~~~~lmi~f~a~~~~-~~i~~d~~Eied  322 (323)
                      +. ..+....++..|.+.+.. ..++++++|+++
T Consensus       197 ~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~  230 (300)
T 3dup_A          197 MESPAGIKPDTLFLYDLALPEDFRPHNTDGEMAD  230 (300)
T ss_dssp             EEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEE
T ss_pred             EecCCCeEEEEEEEEEEEecCCCcCCCCchHhhe
Confidence            21 111223445556555543 234668888875

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.99  E-value=1.2e-10  Score=103.38  Aligned_cols=73  Identities=16%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             CeEEEEeeccCCCCcccceeeecCCCC-CHHHHHHHHHHHHhCC-eeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612          234 DRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEETGI-EVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (323)
Q Consensus       234 ~riLL~rr~~~~~g~w~lPgG~VE~GE-s~eeAa~REv~EEtGL-~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~  311 (323)
                      ..||++.|.   .|.|+||||+||+|| |+++|++||+.||+|+ .+....|+.+..+.+.    ....+..|.+....+
T Consensus        44 ~~iLmQ~R~---~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp----~~V~LHfY~crl~~G  116 (214)
T 3kvh_A           44 FSVLMQMRF---DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGP----HRVVAHLYARQLTLE  116 (214)
T ss_dssp             EEEEEEEET---TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC--------CEEEEEEEEECCHH
T ss_pred             heEEEeeee---CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCC----CEEEEEEEEEEeeCC
Confidence            346777665   489999999999999 9999999999999997 5787888888776642    145667777776654


Q ss_pred             CC
Q 020612          312 EI  313 (323)
Q Consensus       312 ~i  313 (323)
                      ++
T Consensus       117 e~  118 (214)
T 3kvh_A          117 QL  118 (214)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=98.98  E-value=8.5e-10  Score=100.73  Aligned_cols=56  Identities=29%  Similarity=0.466  Sum_probs=44.5

Q ss_pred             EEEEEEEeCCC--CeEEEEeecc---CCCCcccceeeecCCCCC--------------------HHHHHHHHHHHHhCCe
Q 020612          223 VVIMLVIDREN--DRVLLSRQSR---FVPRMWSCIAGFIEPGES--------------------LEEAVRRETWEETGIE  277 (323)
Q Consensus       223 vVivlV~~~~~--~riLL~rr~~---~~~g~w~lPgG~VE~GEs--------------------~eeAa~REv~EEtGL~  277 (323)
                      ++++++.+..+  .+|||+||..   +.+|.|.||||+||+||+                    +.+||+||++|||||.
T Consensus        11 A~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~   90 (232)
T 3qsj_A           11 ATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWL   90 (232)
T ss_dssp             EEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCce
Confidence            34444444323  3899999974   357999999999999997                    5999999999999996


Q ss_pred             e
Q 020612          278 V  278 (323)
Q Consensus       278 v  278 (323)
                      +
T Consensus        91 l   91 (232)
T 3qsj_A           91 L   91 (232)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.71  E-value=2.4e-08  Score=89.25  Aligned_cols=61  Identities=20%  Similarity=0.171  Sum_probs=46.6

Q ss_pred             EEEEEEeCCC-CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCC------eeccEEEEEEe
Q 020612          224 VIMLVIDREN-DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI------EVGEVVYHTSQ  287 (323)
Q Consensus       224 VivlV~~~~~-~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL------~v~~v~~~gs~  287 (323)
                      ..+++++..+ .+|||+|+.   .+.|.+|||.+|+||+.++|++||+.||+|+      +.....++|.+
T Consensus        62 ~avil~~~~~~phVLLlq~~---~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w  129 (208)
T 3bho_A           62 EGVLIVHEHRLPHVLLLQLG---TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW  129 (208)
T ss_dssp             EEEEEEEETTEEEEEEEEEE---TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred             EEEEEEcCCCCcEEEEEEcC---CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence            3444444322 379999974   4699999999999999999999999999994      44556677773

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.66  E-value=5.9e-08  Score=92.54  Aligned_cols=68  Identities=15%  Similarity=0.036  Sum_probs=51.3

Q ss_pred             CCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHh-CCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612          233 NDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEET-GIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (323)
Q Consensus       233 ~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEt-GL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~  311 (323)
                      ++||||+  .  ..| |.+|||.++.++  .++++||++||| |++++...+++.+..+.     ..+..+.|.|...++
T Consensus       193 ~g~vLL~--~--~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~-----~~~~~i~f~~~~~~g  260 (321)
T 3rh7_A          193 QGAVFLA--G--NET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKS-----DGRQNIVYHALASDG  260 (321)
T ss_dssp             SSCEEEB--C--SSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTT-----TCCEEEEEEEEECSS
T ss_pred             CCEEEEe--e--CCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCC-----CceEEEEEEEEeCCC
Confidence            5899999  2  367 999988665444  459999999997 99999888888887653     224456788876654


Q ss_pred             C
Q 020612          312 E  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       261 ~  261 (321)
T 3rh7_A          261 A  261 (321)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=96.86  E-value=0.00033  Score=48.75  Aligned_cols=33  Identities=21%  Similarity=0.590  Sum_probs=28.9

Q ss_pred             ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      +..+|||+||+...+.....+..|+  .|+.++|.
T Consensus        17 ~~~k~CP~CG~~~fm~~~~~R~~C~--kCG~t~~~   49 (50)
T 3j20_Y           17 RKNKFCPRCGPGVFMADHGDRWACG--KCGYTEWK   49 (50)
T ss_dssp             CSSEECSSSCSSCEEEECSSEEECS--SSCCEEEC
T ss_pred             EecccCCCCCCceEEecCCCeEECC--CCCCEEEC
Confidence            5689999999998888778889998  79999885

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=94.14  E-value=0.023  Score=40.08  Aligned_cols=33  Identities=24%  Similarity=0.573  Sum_probs=26.4

Q ss_pred             ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      +..+|||.||.-+.......+..|.  .|+...|-
T Consensus        16 ~~~~fCPkCG~~~~ma~~~dr~~C~--kCgyt~~~   48 (55)
T 2k4x_A           16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFK   48 (55)
T ss_dssp             CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEEC
T ss_pred             EccccCcCCCCceeEeccCCEEECC--CCCCEEEe
Confidence            4589999999988766666788997  79988764

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=87.95  E-value=0.31  Score=39.02  Aligned_cols=32  Identities=19%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             cCCCCCCCCCCCeeccC----CccccccCCCCCCcccC
Q 020612          185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRIYP  218 (323)
Q Consensus       185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~yp  218 (323)
                      ..+|||.||.-|....+    ..+..|.  .|+..++.
T Consensus         3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~--~C~y~~~~   38 (113)
T 3h0g_I            3 NFQYCIECNNMLYPREDKVDRVLRLACR--NCDYSEIA   38 (113)
T ss_dssp             CCCCCSSSCCCCEECCCTTTCCCCEECS--SSCCEECC
T ss_pred             cceeCcCCCCEeeEcccCCCCeeEEECC--CCCCeEEc
Confidence            47899999999988754    3467997  79988764

>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}

Probab=83.16  E-value=0.38  Score=43.56  Aligned_cols=33  Identities=21%  Similarity=0.593  Sum_probs=22.6

Q ss_pred             hhhccCCCCCCCCCC-CeeccCC---ccccccCCCCCCc
Q 020612          181 EWHNVSRFCGHCGEK-TIPKEAG---KLKQCSNASCKKR  215 (323)
Q Consensus       181 ~W~~~~~fC~~CG~~-~~~~~~g---~~~~C~~~~C~~~  215 (323)
                      .|-..+.|||.||+. +...++.   -...|+  .|...
T Consensus        29 ~Wv~~n~yCPnCG~~~l~~f~nN~PVaDF~C~--~C~Ee   65 (257)
T 4esj_A           29 DWVYRQSYCPNCGNNPLNHFENNRPVADFYCN--HCSEE   65 (257)
T ss_dssp             HHHHHHCCCTTTCCSSCEEC----CCCEEECT--TTCCE
T ss_pred             HHHHHCCcCCCCCChhhhhccCCCcccccccC--Ccchh
Confidence            599999999999994 6554433   335787  68653

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}

Probab=80.67  E-value=0.88  Score=37.58  Aligned_cols=30  Identities=30%  Similarity=0.664  Sum_probs=23.8

Q ss_pred             cCCCCCCCCCCCeeccC----CccccccCCCCCCcc
Q 020612          185 VSRFCGHCGEKTIPKEA----GKLKQCSNASCKKRI  216 (323)
Q Consensus       185 ~~~fC~~CG~~~~~~~~----g~~~~C~~~~C~~~~  216 (323)
                      ..+|||.||.-|.+.++    .....|.  .|+...
T Consensus        23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr--tCgY~~   56 (133)
T 3qt1_I           23 TFRFCRDCNNMLYPREDKENNRLLFECR--TCSYVE   56 (133)
T ss_dssp             CCCBCTTTCCBCBCCBCTTTCCBCCBCS--SSCCBC
T ss_pred             CCeeCCCCCCEeeECccCCCceeEEECC--CCCCcE
Confidence            47999999999988754    3467897  699865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	1e-21
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	4e-16
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	3e-14
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	6e-14
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	7e-13
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	1e-12
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	2e-12
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-12
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-11
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	4e-11
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	1e-10
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	1e-10
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-10
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	4e-10
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	1e-09
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-09
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	2e-09
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	2e-09
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	2e-08
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-07
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	2e-06
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-06
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	3e-06
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	8e-06
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	9e-06
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	4e-05

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 86.7 bits (214), Expect = 1e-21
 Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 7/103 (6%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           ++ P +I+ +    +D +LL++ +R    + + +AGF+E GE+LE+AV RE  EE+GI+V
Sbjct: 1   QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKV 58

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             + Y TSQPWP      P  LM  F A   S +I +D +EL 
Sbjct: 59  KNLRYVTSQPWP-----FPQSLMTAFMAEYDSGDIVIDPKELL 96

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 4e-16
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 222 PVVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             +  LV+  +  RVLL  + R F    W+   G ++ GE++E+  RRE  EE+G+ V  
Sbjct: 4   SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDA 63

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFE-INVDKEELE 321
           +       +         +LM        S +   V+ +E+ 
Sbjct: 64  LHKVGQIVFEFVGEP---ELMDVHVFCTDSIQGTPVESDEMR 102

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRR 268
           +R +  V+     +V+  E   +LL ++           +W   +G +E GE+ ++A  R
Sbjct: 4   ERTHVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVR 63

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           E  EETG+ V  V +  +         +   L   + A  +  +        E
Sbjct: 64  EACEETGLRVRPVKFLGAYLGRFPDGVL--ILRHVWLAEPEPGQTLAPAFTDE 114

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 66.0 bits (160), Expect = 6e-14
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           R+ PV   +++D    + +L +  +     W    G I+  ES  +   RE +EETG + 
Sbjct: 1   RI-PVRGAIMLDMSMQQCVLVKGWKA-SSGWGFPKGKIDKDESDVDCAIREVYEETGFDC 58

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKE 318
              +            ++  Q +  +     S +   +  
Sbjct: 59  SSRINPNEFIDM----TIRGQNVRLYIIPGISLDTRFESR 94

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.5 bits (156), Expect = 7e-13
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 187 RFCGHCGEKTIPKEAGKLKQCSNASCKKRI--YPR----VDPVVIMLVIDRENDRVLLSR 240
           +F     EK   +    L +      ++ +  Y +    VD V++    + +  +VLL +
Sbjct: 1   QFASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQ 60

Query: 241 QSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWP-VGPNSMPC 298
           +     R  W+   GF+   ES E++V RET EETG+ + +        +     +    
Sbjct: 61  RKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGW 120

Query: 299 QLMVGFYAYAKSFEINVDKEELE 321
            + V + A+     +    +  E
Sbjct: 121 VVTVSYLAFIGEEPLIAGDDAKE 143

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 215 RIYPRVDPVV-IMLVIDRENDRVLLSRQS-RFVPRMWSCIAGFIEPGESLEEAVRRETWE 272
               R  P+V +  +++      LL +++ R     W    G ++  E+LE A  R T  
Sbjct: 10  ATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMA 69

Query: 273 ETGIEVGE-------VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           E G+ +         V  H       G +     +++GF       E+ +  E+ +
Sbjct: 70  ELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHD 125

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
             I L+ D E  RV++  ++    R   ++   G +E  E+  E+V RE +EETG+ +  
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
                 + WP+        +++ + A   S  +   +E 
Sbjct: 70  PQLVGIKNWPLDTGG--RYIVICYKATEFSGTLQSSEEG 106

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
           P V +  +  ++D+ LL  +         +  AG +EPGES+ +A  RE  EETG     
Sbjct: 2   PNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 61

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
            V      W    N     L   F     SF+ +   + 
Sbjct: 62  EVLTGIYHWTCASNGTTY-LRFTFSGQVVSFDPDRKLDT 99

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 10/107 (9%)

Query: 217 YPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGI 276
           Y +    +         + VLL   SR  P  W    G +EP E    A  RE  EE G+
Sbjct: 10  YKKRAACLC--FRSESEEEVLLVSSSRH-PDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 66

Query: 277 EV--GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           +   G +V                  +          +         
Sbjct: 67  KGTLGRLVGIFENQER-----KHRTYVYVLIVTEVLEDWEDSVNIGR 108

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 58.3 bits (140), Expect = 4e-11
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVV 282
           V   ++++  N +VLL +  R    ++    G +E  E+  EAV+RE  EETGI V  + 
Sbjct: 3   VTSGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 283 Y-HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVD 316
           + +           MP  ++     Y +   I+ D
Sbjct: 59  FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFD 93

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 7/108 (6%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETW 271
           +       P V ++ +     R+L  RQ R           AG IEPGE   EA RRE  
Sbjct: 17  RYEIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELA 74

Query: 272 EETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
           E+TG+        +       P     +  V      K  E + D++E
Sbjct: 75  EQTGLSGDLTYLFSYFVS---PGFTDEKTHVFLAENLKEVEAHPDEDE 119

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 216 IYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGE-SLEEAVRRETWEET 274
           ++       +   +      +L+    RF         GF++  + SLEE ++RE  EE 
Sbjct: 27  LHAP-SQAKLFDRVPIRR-VLLM--MMRF-DGRLGFPGGFVDTRDISLEEGLKRELEEEL 81

Query: 275 GIEV-----GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
           G  +      E  Y +SQ         P + +  FY      E     E 
Sbjct: 82  GPALATVEVTEDDYRSSQVRE-----HPQKCVTHFYIKELKLEEIERIEA 126

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           +      ++V   EN+ ++L +        +    G IE  E+ EEA+ RE  EE GI V
Sbjct: 15  QTRYAAYIIVSKPENNTMVLVQAPN---GAYFLPGGEIEGTETKEEAIHREVLEELGISV 71

Query: 279 GEVVY-HTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEE 319
               Y   +  +    +        G++  A ++    +  E
Sbjct: 72  EIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLE 113

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 55.2 bits (132), Expect = 4e-10
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPR-MWSCIAGFIEPGESLEEAVRRETWEE 273
             Y  +D ++     +     +LL +++       WS + GF++  ES+++A +R   E 
Sbjct: 8   TFYLGIDCIIFG--FNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 65

Query: 274 TGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           TG+E   +    +       +     + + +YA     E + +  +  
Sbjct: 66  TGLENVYMEQVGAFGAI-DRDPGERVVSIAYYALININEYDRELVQKH 112

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
           V+      VLL R        W    G  EPGESLEEA  RE WEETG+    ++     
Sbjct: 8   VVFNAKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT 64

Query: 288 PWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
            +    N    +  V ++         +++    
Sbjct: 65  RY---VNPKGVEREVHWFLMRGEGAPRLEEGMTG 95

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 228 VIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 287
            +D      LL  Q+      W+   G +EPGE   E   R T EE GIE G++      
Sbjct: 23  KVDNNAIEFLL-LQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGF 81

Query: 288 PWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
              +   +      V ++           +   E
Sbjct: 82  KRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHE 115

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 214 KRIYPRVDPVVIMLVIDRENDRVLLSRQSRFV-------PRMWSCIAGFIEPGESLEEAV 266
           +R         ++L  D   D V+L  Q R         P +   +AG IE GES+E+  
Sbjct: 50  RREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVA 109

Query: 267 RRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           RRE  EE G+ V       S     G  S    +MVG      +  I+   +E E
Sbjct: 110 RREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENE 164

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 213 KKRIYPRVDP--VVIMLVIDRENDRVLLSRQSRFVPRM--WSCIAGFIEPGESLEEAVRR 268
            +R+Y R+ P     ++++   +D ++L R+              G I+PGES+ EA  R
Sbjct: 36  VRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANR 95

Query: 269 ETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           E  EE G    ++ +           S    ++V    Y +S E +   E L 
Sbjct: 96  ELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEP-EPLP 147

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 223 VVIMLVIDRENDRVLLSRQSR----FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
                + +    ++L++R++     +     + + G  + GES E+AV R    E G+E+
Sbjct: 4   AFSSWLFN-AKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEI 62

Query: 279 GEVVYHTSQPWPVGPNSMP--CQLMVGFYAYAKSFEINVDKEELE 321
                          +        +   +A   +  + ++ +E+ 
Sbjct: 63  TPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVM 107

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 46.1 bits (108), Expect = 5e-07
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG 279
           V    +++          L  Q+ + P  W+   G ++PGE   +A  RET EE  I   
Sbjct: 2   VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 61

Query: 280 EVVYHTSQPWPVGPNSMPCQLMVGFYAYA--KSFEINVDKEELE 321
           ++  H      +   +      V ++        ++ +  E   
Sbjct: 62  QLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQN 105

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 224 VIMLVIDRENDRVLLSRQS---RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGE 280
           V++ +    + RVLL+ +S          +   G ++ GE+  +A  RE  EE  ++   
Sbjct: 35  VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA 94

Query: 281 VVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
           V           P       ++G  A      + V  E  +
Sbjct: 95  VTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQ 135

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 223 VVIMLVIDRENDRVLLSR----QSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEV 278
           VV   + + +  ++ + R    +S F   +   + G ++ GE+ EEA RRE  EE  +E+
Sbjct: 30  VVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 88

Query: 279 GEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
             + +     +     ++   + V  Y          +  ++ 
Sbjct: 89  DALSWRPLASFSPFQTTLSSFMCV--YELRSDATPIFNPNDIS 129

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 222 PVVIMLVIDRENDRVLLSRQS----RFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIE 277
               ++V D    ++L+ R++         + +   G ++  E L E+ RRE  EE GI 
Sbjct: 31  RATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIA 89

Query: 278 VGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
                 H    +        C++    ++        + ++E+ 
Sbjct: 90  GVPFAEHGQFYFED----KNCRVWGALFSCVSHGPFALQEDEVS 129

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 224 VIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
           + + +I  EN+ + ++R++    +        G IE GE+ E+AV RE  EE GI     
Sbjct: 6   IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65

Query: 282 VYHTSQPWPVGPNSMPCQLMVGFYAYAKSFEINVDKEELE 321
                  +       P + +  ++   + +E     +E +
Sbjct: 66  SLFEKLEYE-----FPDRHITLWFWLVERWEGEPWGKEGQ 100

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 220 VDPVVIMLVIDRENDRVLLSRQSRFVPRM----------WSCIAGFIEPGESLEEAVRRE 269
            DP++     D   ++++     + + +           W+   G ++PGE +   ++RE
Sbjct: 113 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 172

Query: 270 TWEETGIEV 278
             EE    +
Sbjct: 173 FGEEALNSL 181

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV 281
             V + +++ +  ++  + +    P  W    G I+ GE    A  RE  EETG+   EV
Sbjct: 15  RNVGICLMNNDK-KIFAASRLDI-PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV 72

Query: 282 VYHTSQPWP 290
           +        
Sbjct: 73  IAEVPYWLT 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.86
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.72
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.72
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.68
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.65
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.63
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.63
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.62
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.61
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.61
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.6
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.59
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.59
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.59
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.58
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.57
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.56
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.54
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.53
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.52
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.51
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.5
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.5
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.47
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.32
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.27
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.23
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.12
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	98.97
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.59
d1vk6a3	97	NADH pyrophosphatase {Escherichia coli [TaxId: 562	97.89
d1vk6a4	29	NADH pyrophosphatase intervening domain {Escherich	97.31
d2k4xa1	55	Ribosomal protein S27ae {Thermoplasma acidophilum	92.96
d1dgsa1	181	NAD+-dependent DNA ligase, domain 3 {Thermus filif	84.96

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.4e-21  Score=161.02  Aligned_cols=97  Identities=41%  Similarity=0.695  Sum_probs=86.5

Q ss_pred             CcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          219 RVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       219 r~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      ++.|+|+++|.+  ++++||+|++++++|.|++|||+||+|||+++||+||++||||+++....+++..++..     .+
T Consensus         1 ~i~paViv~i~~--~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~-----~~   73 (131)
T d1vk6a2           1 QIAPCIIVAIRR--DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ   73 (131)
T ss_dssp             CCEEEEEEEEEE--TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-----TE
T ss_pred             CcccEEEEEEEe--CCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCc-----Cc
Confidence            478999998887  58999999988778999999999999999999999999999999999999999888764     66


Q ss_pred             eEEEEEEEEeeccCCCCCcccccC
Q 020612          299 QLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      .+++.|.+....+++.++++|+.+
T Consensus        74 ~~~~~f~~~~~~~~~~~~~~E~~~   97 (131)
T d1vk6a2          74 SLMTAFMAEYDSGDIVIDPKELLE   97 (131)
T ss_dssp             EEEEEEEEEEEECCCCCCTTTEEE
T ss_pred             eEEEEEEEEEcCCcccCCCccEEE
Confidence            788999998888888888888765

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.72  E-value=1.3e-17  Score=139.74  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=80.9

Q ss_pred             CCCcccCCcccEEEEEEEeCCCCeEEEEeeccC-----CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612          212 CKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRF-----VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS  286 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~-----~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs  286 (323)
                      |.+.++|....++.+++++. +++|||+||+..     .+|.|++|||++|+|||+++||+||++||||+++..+++++.
T Consensus         3 ~~~~~~p~~~~a~~~vi~~~-~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~   81 (158)
T d1sjya_           3 DERTHVPVELRAAGVVLLNE-RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGA   81 (158)
T ss_dssp             SCCCCCCCCEEEEEEEEBCT-TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             CccccCCCceeEEEEEEEeC-CCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEE
Confidence            56788898777777777775 589999998742     357899999999999999999999999999999999999988


Q ss_pred             eecCCCCCCCCeeEEEEEEEEeeccC-CC-CCcccccC
Q 020612          287 QPWPVGPNSMPCQLMVGFYAYAKSFE-IN-VDKEELEG  322 (323)
Q Consensus       287 ~~~~~~~~~~~~~lmi~f~a~~~~~~-i~-~d~~Eied  322 (323)
                      +.+.+...  ....+..|++....+. +. .+.+|+.+
T Consensus        82 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~~  117 (158)
T d1sjya_          82 YLGRFPDG--VLILRHVWLAEPEPGQTLAPAFTDEIAE  117 (158)
T ss_dssp             EEEECTTS--CEEEEEEEEEEECSSCCCCCCCCSSEEE
T ss_pred             EEEECCCC--CEEEEEEEEEEEcCCcccCCCCCcceEE
Confidence            76655332  2345556666555432 22 23456654

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.72  E-value=1.2e-17  Score=140.10  Aligned_cols=105  Identities=17%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             cccCCcccEEEEEEE--eCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          215 RIYPRVDPVVIMLVI--DRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       215 ~~ypr~~pvVivlV~--~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      ..+|++..+|-++|+  ++.+.+|||+||+. +..|.|.+|||+|++|||+++||+||++||||+++..+..++.+..+.
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   83 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAID   83 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTT
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCc
Confidence            467777777655554  43334799999875 447899999999999999999999999999999999999998876665


Q ss_pred             CCCCCCeeEEEEEEEEeeccCCCCCcccc
Q 020612          292 GPNSMPCQLMVGFYAYAKSFEINVDKEEL  320 (323)
Q Consensus       292 ~~~~~~~~lmi~f~a~~~~~~i~~d~~Ei  320 (323)
                      ...+ ...+.+.|++...........+|.
T Consensus        84 ~~~~-~~~v~~~~~~~~~~~~~~~~~~e~  111 (147)
T d2fb1a2          84 RDPG-ERVVSIAYYALININEYDRELVQK  111 (147)
T ss_dssp             SSSS-SCEEEEEEEEECCTTSSCHHHHHH
T ss_pred             ccCC-CceEEEEEEEEecCCcccCCCcch
Confidence            4433 345667778776544443333343

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.68  E-value=8e-17  Score=132.89  Aligned_cols=88  Identities=27%  Similarity=0.307  Sum_probs=65.2

Q ss_pred             CCeEEEEeeccC-CCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeEEEEEEEEeecc
Q 020612          233 NDRVLLSRQSRF-VPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQLMVGFYAYAKSF  311 (323)
Q Consensus       233 ~~riLL~rr~~~-~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~lmi~f~a~~~~~  311 (323)
                      ++|+||+|+.+. ..|.|++|||++|.|||+++||+||++||||+++....+++.+.+.....+ .....+.|.+.....
T Consensus        13 ~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (146)
T d2b0va1          13 DDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNG-TTYLRFTFSGQVVSF   91 (146)
T ss_dssp             TTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTT-EEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCC-eEEEEEEEEEEeecC
Confidence            589999998763 467899999999999999999999999999999988888887666554433 334455566655433


Q ss_pred             CC-CCCccccc
Q 020612          312 EI-NVDKEELE  321 (323)
Q Consensus       312 ~i-~~d~~Eie  321 (323)
                      .. ...++|+.
T Consensus        92 ~~~~~~~~E~~  102 (146)
T d2b0va1          92 DPDRKLDTGIV  102 (146)
T ss_dssp             CTTSCCCTTEE
T ss_pred             CCCCCCCccee
Confidence            22 23344543

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.65  E-value=2.8e-16  Score=131.87  Aligned_cols=92  Identities=23%  Similarity=0.305  Sum_probs=70.2

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      ..+.+++|++.+++++||++|..  ...+.|++|||+||+|||+++||+||++||||+++....+++.+.|++...  .+
T Consensus         8 ~~~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~--~~   85 (155)
T d2b06a1           8 ILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTG--GR   85 (155)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTS--CE
T ss_pred             EEEEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCC--Ce
Confidence            34556677788888999999874  234679999999999999999999999999999999988888877765332  34


Q ss_pred             eEEEEEEEEeeccCCC
Q 020612          299 QLMVGFYAYAKSFEIN  314 (323)
Q Consensus       299 ~lmi~f~a~~~~~~i~  314 (323)
                      .+++.|.+....+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~  101 (155)
T d2b06a1          86 YIVICYKATEFSGTLQ  101 (155)
T ss_dssp             EEEEEEEECEEEECCC
T ss_pred             EEEEEEEEEecCCccC
Confidence            5666677654445444

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.1e-16  Score=132.05  Aligned_cols=69  Identities=29%  Similarity=0.485  Sum_probs=57.2

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      +++++|++  +++|||++|++ +..|+|++|||++|+|||+++||+||++|||||++..+++++...+.+..
T Consensus         7 ~~~v~i~~--~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   76 (156)
T d1irya_           7 YTLVLVLQ--PQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVG   76 (156)
T ss_dssp             EEEECEEC--SSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETT
T ss_pred             EEEEEEEE--CCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCC
Confidence            44555554  58999999875 45689999999999999999999999999999999888888876665433

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.9e-16  Score=131.05  Aligned_cols=96  Identities=22%  Similarity=0.369  Sum_probs=73.0

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCC
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMP  297 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~  297 (323)
                      .+|.++|++. +++|||+||+.   ..+|+|.+| ||++++|||+++||+||++|||||++..+.+++.+.+...    .
T Consensus        31 ~~v~v~v~~~-~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~----~  105 (161)
T d2fkba1          31 RATYIVVHDG-MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDK----N  105 (161)
T ss_dssp             EEEEEEEECS-SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEET----T
T ss_pred             eEEEEEEEeC-CCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecC----C
Confidence            4777778876 58999999863   468999876 8999999999999999999999999888888887655421    2


Q ss_pred             eeEEEEEEEEeeccCCCCCcccccC
Q 020612          298 CQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       298 ~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ...+..++.....+++.++++|+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~Ev~~  130 (161)
T d2fkba1         106 CRVWGALFSCVSHGPFALQEDEVSE  130 (161)
T ss_dssp             EEEEEEEEEEECCCCCCCCTTTEEE
T ss_pred             cEEEEEEEEEEECCCCcCChhHeeE
Confidence            2333333333456778888888764

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=1.2e-15  Score=129.53  Aligned_cols=100  Identities=30%  Similarity=0.307  Sum_probs=65.2

Q ss_pred             cccCCcccEEEEEEEeCCCCeEEEEeeccCC--CCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEe-ecCC
Q 020612          215 RIYPRVDPVVIMLVIDRENDRVLLSRQSRFV--PRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ-PWPV  291 (323)
Q Consensus       215 ~~ypr~~pvVivlV~~~~~~riLL~rr~~~~--~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~-~~~~  291 (323)
                      .++-...++|++++++  ++++||+||.+++  ...|++|||+||+|||+++||+||++||||+.+. +..++.+ +.+.
T Consensus        18 ~~~v~~~~aV~vl~~~--~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g   94 (158)
T d1v8ya_          18 YEIVEHKPAVAVIALR--EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD-LTYLFSYFVSPG   94 (158)
T ss_dssp             EEEEEECCEEEEEEEE--TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEE-EEEEEEEESCTT
T ss_pred             EEEEecCCEEEEEEEE--CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcce-eeeecceecCCC
Confidence            4444445677777776  4799999988754  3489999999999999999999999999999874 5555543 3221


Q ss_pred             CCCCCCeeEEEEEEEEee-ccCCCCCccccc
Q 020612          292 GPNSMPCQLMVGFYAYAK-SFEINVDKEELE  321 (323)
Q Consensus       292 ~~~~~~~~lmi~f~a~~~-~~~i~~d~~Eie  321 (323)
                          .....+..|++... .....++++|..
T Consensus        95 ----~~~~~~~~f~a~~~~~~~~~~d~~E~~  121 (158)
T d1v8ya_          95 ----FTDEKTHVFLAENLKEVEAHPDEDEAI  121 (158)
T ss_dssp             ----TBCCEEEEEEEEEEEECC--------C
T ss_pred             ----cceEEEEEEEEccccccccCCCCCeeE
Confidence                23345566776543 344556665643

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=2.1e-15  Score=122.42  Aligned_cols=65  Identities=35%  Similarity=0.488  Sum_probs=55.3

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      .+.++|++. +++|||+|++   .|.|++|||+||+|||+++||+||++|||||++..+.+++...+..
T Consensus         4 ~agavv~~~-~~~vLl~~~~---~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~   68 (126)
T d1vcda1           4 GAGGVVFNA-KREVLLLRDR---MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVN   68 (126)
T ss_dssp             EEEEEEECT-TSCEEEEECT---TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEC-CCEEEEEEcC---CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeecc
Confidence            456677775 5889998875   4899999999999999999999999999999998888888765544

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.7e-15  Score=127.15  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             EEEEEEEeCCCCeEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEEEEeecC----CCCCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYHTSQPWP----VGPNS  295 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~gs~~~~----~~~~~  295 (323)
                      +|.++|.+. +++|||+||++ +.+|.|++|||+|++|||+++||+||++|||||++.  .+.+++.+.+.    .....
T Consensus        20 ~v~~vi~~~-~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1ryaa_          20 SLDFIVENS-RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTD   98 (160)
T ss_dssp             EEEEEEECT-TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSS
T ss_pred             EEEEEEEeC-CCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccCCC
Confidence            444555664 57999999875 457899999999999999999999999999999864  44555543322    11111


Q ss_pred             C-CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          296 M-PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       296 ~-~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      . .+.+.+.|.+..........++|+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~E~~e  126 (160)
T d1ryaa_          99 FTTHYVVLGFRFRVSEEELLLPDEQHDD  126 (160)
T ss_dssp             SCEEEEEEEEEEECCGGGCCCCSSSEEE
T ss_pred             cceEEEEEEEEEEecCCCccCCCcceEE
Confidence            1 23445556666666666666666543

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.60  E-value=2.4e-15  Score=132.41  Aligned_cols=102  Identities=25%  Similarity=0.353  Sum_probs=72.0

Q ss_pred             CCCcccCCcccEEEEEEE--eCCCC--eEEEEeecc-CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec--cEEEE
Q 020612          212 CKKRIYPRVDPVVIMLVI--DREND--RVLLSRQSR-FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG--EVVYH  284 (323)
Q Consensus       212 C~~~~ypr~~pvVivlV~--~~~~~--riLL~rr~~-~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~--~v~~~  284 (323)
                      +....||+..+.|-++|+  +.+++  +|||+||++ +..|.|.+|||+||+|||+++||+||++|||||++.  .+..+
T Consensus        28 ~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~  107 (202)
T d2fmla2          28 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  107 (202)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             ccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeee
Confidence            334568887766655553  43333  799999986 347999999999999999999999999999999874  45566


Q ss_pred             EEeecCCCCCCCCeeEEEEEEEEeeccCCC
Q 020612          285 TSQPWPVGPNSMPCQLMVGFYAYAKSFEIN  314 (323)
Q Consensus       285 gs~~~~~~~~~~~~~lmi~f~a~~~~~~i~  314 (323)
                      +++..+..... ...+.++|++.+..+.+.
T Consensus       108 ~~~~~~~r~~~-~~~i~~~~~~~~~~~~~~  136 (202)
T d2fmla2         108 HSFSRPDRDPR-GWVVTVSYLAFIGEEPLI  136 (202)
T ss_dssp             EEECCTTSSTT-SSEEEEEEEEECCCCCCC
T ss_pred             eecccCCcccc-ceEEEEEEEEEeCCCCcC
Confidence            66554433222 345666777766555444

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.59  E-value=1.7e-16  Score=132.68  Aligned_cols=59  Identities=25%  Similarity=0.392  Sum_probs=51.5

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccE
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEV  281 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v  281 (323)
                      |++.++|++.+.++|||+|+.+ ..+.|++|||++|.|||+++||+||++||||+++...
T Consensus         3 ~v~Gaii~~~~~~kvLLvk~~~-~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~   61 (151)
T d2a6ta2           3 PVRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSR   61 (151)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTT
T ss_pred             cEEEEEEEECCCCEEEEEEEeC-CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceee
Confidence            5777888887778999999864 4678999999999999999999999999999987543

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.2e-16  Score=125.09  Aligned_cols=88  Identities=20%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             EEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +++++|++ ++++|||+||..  ..+|.|+||||+||.|||+++|++||++||||+++....+++...+.+..   .+..
T Consensus         6 vav~ii~~-~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~---~~~~   81 (129)
T d1puna_           6 IAVGIIRN-ENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPD---RHIT   81 (129)
T ss_dssp             EEEEECBC-TTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSS---EEEE
T ss_pred             EEEEEEEE-CCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccc---ccee
Confidence            33444454 468999999864  34789999999999999999999999999999999888877776665421   2344


Q ss_pred             EEEEEEEeeccCCC
Q 020612          301 MVGFYAYAKSFEIN  314 (323)
Q Consensus       301 mi~f~a~~~~~~i~  314 (323)
                      ++.|.+....+++.
T Consensus        82 ~~~~~~~~~~~~~~   95 (129)
T d1puna_          82 LWFWLVERWEGEPW   95 (129)
T ss_dssp             EEEEECCCCSSCCC
T ss_pred             EEEEEEeeccCcCC
Confidence            45555544444443

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.8e-15  Score=127.54  Aligned_cols=98  Identities=17%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             EEEEEEEeCCCCeEEEEeecc---CCCCcccc-eeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE---eecCCCCCC
Q 020612          223 VVIMLVIDRENDRVLLSRQSR---FVPRMWSC-IAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS---QPWPVGPNS  295 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~---~~~g~w~l-PgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs---~~~~~~~~~  295 (323)
                      ++.++|++. ++++||+||+.   ..+|.|.+ |||+|++|||+++||+||++|||||++..++.+..   +...+. ++
T Consensus         4 a~~v~i~n~-~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~-~~   81 (153)
T d1hzta_           4 AFSSWLFNA-KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDP-SG   81 (153)
T ss_dssp             CEEEEEECT-TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECT-TS
T ss_pred             EEEEEEEEC-CCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccc-cc
Confidence            566778886 58999999863   45888976 99999999999999999999999999876665432   111121 11


Q ss_pred             CCeeEEEEEEEEeeccCCCCCcccccC
Q 020612          296 MPCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       296 ~~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      .....+..++.....++++++++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~Ev~~  108 (153)
T d1hzta_          82 IVENEVCPVFAARTTSALQINDDEVMD  108 (153)
T ss_dssp             CEEEEECCEEEEEBCSCCCCCTTTEEE
T ss_pred             ccceeEEEEEEEeeCCCccCChhheeE
Confidence            122222223333456778888888865

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.58  E-value=3.9e-15  Score=125.94  Aligned_cols=99  Identities=19%  Similarity=0.320  Sum_probs=70.7

Q ss_pred             ccEEEEEEEeCCCCeEEEEeecc---CCCCcccce-eeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSR---FVPRMWSCI-AGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~---~~~g~w~lP-gG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~  296 (323)
                      ..+|.++|++. ++++||+||+.   ..+|+|++| ||+|++|||+++||+||++|||||++....++....+...... 
T Consensus        28 ~~~v~~~v~~~-~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~-  105 (162)
T d2o5fa1          28 VRVVNAFLRNS-QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTT-  105 (162)
T ss_dssp             SEEEEEEEECT-TSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSS-
T ss_pred             EEEEEEEEEcC-CCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEecccccc-
Confidence            35777788875 58999998853   468999876 9999999999999999999999999987777666555433333 


Q ss_pred             CeeEEEEEEEEeeccCCCCCcccccC
Q 020612          297 PCQLMVGFYAYAKSFEINVDKEELEG  322 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i~~d~~Eied  322 (323)
                      ....+..|.+. ..+.+.++++|+.+
T Consensus       106 ~~~~~~~~~~~-~~~~~~~~~~Ev~~  130 (162)
T d2o5fa1         106 LSSFMCVYELR-SDATPIFNPNDISG  130 (162)
T ss_dssp             CSSEEEEEEEE-CSSCCCCCTTTCSE
T ss_pred             ceEEEEEEEEe-cCCCccCChhHeeE
Confidence            22334444443 34667788888754

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.4e-14  Score=125.98  Aligned_cols=93  Identities=24%  Similarity=0.274  Sum_probs=67.1

Q ss_pred             EEEEEEEeCCCCeEEEEeeccCCCC--cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCeeE
Q 020612          223 VVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQL  300 (323)
Q Consensus       223 vVivlV~~~~~~riLL~rr~~~~~g--~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~l  300 (323)
                      +|+++...  ++++||+|+.+++.+  .|++|||+||+||++++||+||++||||+++..+.+++......+   +....
T Consensus        50 ~v~vi~~~--~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g---~~~~~  124 (186)
T d1vhza_          50 AVMIVPIV--DDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSK  124 (186)
T ss_dssp             EEEEEEEE--TTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCE
T ss_pred             EEEEEEcc--CCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeecccc---ccceE
Confidence            44444443  478999999876544  699999999999999999999999999999999999998644322   23345


Q ss_pred             EEEEEEEee-ccCCCCCcccc
Q 020612          301 MVGFYAYAK-SFEINVDKEEL  320 (323)
Q Consensus       301 mi~f~a~~~-~~~i~~d~~Ei  320 (323)
                      +..|++... .+....|+.|.
T Consensus       125 ~~~~~a~~~~~~~~~~de~E~  145 (186)
T d1vhza_         125 MNIVVAQDLYPESLEGDEPEP  145 (186)
T ss_dssp             EEEEEEEEEEECCCCCCCSSC
T ss_pred             EEEEEEEecccccCCCCCCcE
Confidence            555666433 34455555554

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6e-15  Score=120.46  Aligned_cols=68  Identities=26%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             EEEEEEEeC-CCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCC
Q 020612          223 VVIMLVIDR-ENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPV  291 (323)
Q Consensus       223 vVivlV~~~-~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~  291 (323)
                      ++.++|++. .++.+||.++.+ .+|.|.+|||++++|||+++||+||++|||||++....+.+.+....
T Consensus        13 ~a~~vv~~~~~~~~~lL~~~~~-~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (135)
T d2fvva1          13 RAACLCFRSESEEEVLLVSSSR-HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE   81 (135)
T ss_dssp             EEEEEEESSTTCCEEEEEECSS-CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEecCCCEEEEEEEeC-CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeecc
Confidence            444455543 345666666654 46899999999999999999999999999999998888888766543

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.54  E-value=1e-14  Score=120.24  Aligned_cols=65  Identities=29%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeec
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPW  289 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~  289 (323)
                      +++.++|++.++..+||+++.   .|.|++|||+||+|||+++||+||++|||||++....+++....
T Consensus        18 ~~~~~vi~~~~~~~lll~~~~---~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~   82 (147)
T d2azwa1          18 YAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADE   82 (147)
T ss_dssp             CEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEE
T ss_pred             CeEEEEEEECCCCEEEEEEcC---CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEE
Confidence            566777788766777776654   57899999999999999999999999999999888777766543

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.53  E-value=7.7e-15  Score=127.74  Aligned_cols=98  Identities=17%  Similarity=0.143  Sum_probs=68.6

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc---CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCe
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR---FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPC  298 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~---~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~  298 (323)
                      .+|.++++++.+.+|||+||+.   ..+|.|+||||++|.|||+++||+||++|||||....++.++..+..+...+   
T Consensus        33 aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~---  109 (187)
T d1nqza_          33 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVG---  109 (187)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTT---
T ss_pred             cEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccc---
Confidence            3555556655556899999984   4589999999999999999999999999999999999999998654332222   


Q ss_pred             eEEEEEEEEeecc--CCCCCcccccC
Q 020612          299 QLMVGFYAYAKSF--EINVDKEELEG  322 (323)
Q Consensus       299 ~lmi~f~a~~~~~--~i~~d~~Eied  322 (323)
                      ..+.-|++.+...  ....+..|+++
T Consensus       110 ~~V~p~v~~l~~~~~~~~~~~~EV~~  135 (187)
T d1nqza_         110 FHVTPVLGRIAPEALDTLRVTPEVAQ  135 (187)
T ss_dssp             EEEEEEEEEECGGGGGGCCCCTTEEE
T ss_pred             cEEEEEEEEECCccccccccCCcceE
Confidence            2334455554322  23334556653

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.52  E-value=1.8e-14  Score=116.87  Aligned_cols=54  Identities=31%  Similarity=0.414  Sum_probs=46.1

Q ss_pred             CeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEee
Q 020612          234 DRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQP  288 (323)
Q Consensus       234 ~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~  288 (323)
                      .++||+++.. .+|.|.+|||++|+|||+.+||+||++||||+++..+.......
T Consensus        17 ~~~Ll~~r~~-~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   70 (137)
T d1ktga_          17 IEFLLLQASY-PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCH   70 (137)
T ss_dssp             EEEEEEEESS-TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred             EEEEEEEEcC-CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeee
Confidence            3688888764 46899999999999999999999999999999988777665443

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.51  E-value=1.1e-14  Score=123.46  Aligned_cols=61  Identities=26%  Similarity=0.440  Sum_probs=52.6

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEE
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVY  283 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~  283 (323)
                      .+.|.++|+|. +++|||+||... +|.|.+|||+||.|||+++||+||++|||||++..+..
T Consensus        14 R~~Vg~vI~n~-~~~vLL~kR~~~-~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~   74 (165)
T d1jkna_          14 RRNVGICLMNN-DKKIFAASRLDI-PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIA   74 (165)
T ss_dssp             EEEEEEEEECT-TSCEEEEEESSS-TTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEE
T ss_pred             cccEEEEEEeC-CCEEEEEEEcCC-CCcccCccceEcCCCChhHHHHHHHHHhhccccccccc
Confidence            46778888885 589999998753 68999999999999999999999999999998865543

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.50  E-value=1.3e-14  Score=119.43  Aligned_cols=58  Identities=33%  Similarity=0.449  Sum_probs=48.1

Q ss_pred             EEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612          225 IMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS  286 (323)
Q Consensus       225 ivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs  286 (323)
                      .++|++  +++|||+||++  .|.|.+|||++|+|||+++||+||++||||+++..+.++..
T Consensus         5 ~~vi~~--d~kvLl~~r~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   62 (152)
T d1k2ea_           5 SGVLVE--NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYG   62 (152)
T ss_dssp             EEECEE--TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCC
T ss_pred             EEEEEE--CCEEEEEEEcC--CCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEE
Confidence            344444  58999999865  68999999999999999999999999999999866554443

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=4.9e-14  Score=124.11  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             cccEEEEEEEeCCCCeEEEEeeccCCCC--cccceeeecC-CCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCC
Q 020612          220 VDPVVIMLVIDRENDRVLLSRQSRFVPR--MWSCIAGFIE-PGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       220 ~~pvVivlV~~~~~~riLL~rr~~~~~g--~w~lPgG~VE-~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~  296 (323)
                      ..++|.+++++. +++|||+|+.+.+.+  .|++|+|.|| +||++++||+||++||||++++.+++++.+....   +.
T Consensus        37 ~~~~V~vl~~~~-~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~---g~  112 (202)
T d1mqea_          37 HFGAVAIVAMDD-NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAP---GF  112 (202)
T ss_dssp             ECCEEEEEECCT-TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCT---TT
T ss_pred             cCCeEEEEEECC-CCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccC---cc
Confidence            345677777775 589999999876544  7999999999 7999999999999999999999999999853221   22


Q ss_pred             CeeEEEEEEEEe
Q 020612          297 PCQLMVGFYAYA  308 (323)
Q Consensus       297 ~~~lmi~f~a~~  308 (323)
                      ....+..|++..
T Consensus       113 ~~~~~~~fla~~  124 (202)
T d1mqea_         113 SDESVRVYLATG  124 (202)
T ss_dssp             BCCCEEEEEEEE
T ss_pred             CCcEEEEEEEEe
Confidence            334555566653

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1e-13  Score=122.71  Aligned_cols=86  Identities=27%  Similarity=0.305  Sum_probs=67.6

Q ss_pred             ccEEEEEEEeCCCCeEEEEeeccCCC-----C--cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          221 DPVVIMLVIDRENDRVLLSRQSRFVP-----R--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       221 ~pvVivlV~~~~~~riLL~rr~~~~~-----g--~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      ..+|++++++++.++++|+||.|++.     +  .|++|||.||+||++++||+||++||||+++..+.+++.+. +.  
T Consensus        57 ~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~-~s--  133 (209)
T d1g0sa_          57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFL-AS--  133 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEE-SC--
T ss_pred             CCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccc-cC--
Confidence            35667777776678999999987542     2  57999999999999999999999999999999999999763 22  


Q ss_pred             CCCCeeEEEEEEEEee
Q 020612          294 NSMPCQLMVGFYAYAK  309 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~  309 (323)
                      .+.....+..|++.+.
T Consensus       134 pg~~~e~~~~f~a~~~  149 (209)
T d1g0sa_         134 PGGTSERSSIMVGEVD  149 (209)
T ss_dssp             TTTBCCEEEEEEEECC
T ss_pred             CcccCCceEEEEEEEe
Confidence            1234466777887754

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-12  Score=107.78  Aligned_cols=55  Identities=33%  Similarity=0.429  Sum_probs=47.2

Q ss_pred             CCCCeEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEE
Q 020612          231 RENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTS  286 (323)
Q Consensus       231 ~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs  286 (323)
                      .++.++||+++.. ..+.|.+|||++++|||+++||+||++||||+.+..+.++..
T Consensus        26 ~~~~~~LL~~~~~-~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~   80 (153)
T d1xsba_          26 NNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEG   80 (153)
T ss_dssp             STTEEEEEEEESS-TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSS
T ss_pred             CCCCEEEEEEecC-CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeecc
Confidence            3467999998875 356799999999999999999999999999999887776654

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=9.8e-12  Score=107.99  Aligned_cols=84  Identities=27%  Similarity=0.330  Sum_probs=65.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeeccCCC------C--cccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCC
Q 020612          222 PVVIMLVIDRENDRVLLSRQSRFVP------R--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGP  293 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~~~~------g--~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~  293 (323)
                      .+|++++++.+.+++||+||.|++.      +  .|.+|||.++ ||++++||+||++||||+++..+.+++++ |+.  
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~-~~s--  119 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL-YMS--  119 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEE-ESC--
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEccee-ecC--
Confidence            4667777777779999999987431      2  5678999998 66689999999999999999999999986 332  


Q ss_pred             CCCCeeEEEEEEEEee
Q 020612          294 NSMPCQLMVGFYAYAK  309 (323)
Q Consensus       294 ~~~~~~lmi~f~a~~~  309 (323)
                      .++....++.|+|...
T Consensus       120 pG~~~e~~~~f~a~~~  135 (189)
T d1viua_         120 PGGVTELIHFFIAEYS  135 (189)
T ss_dssp             TTTBCCEEEEEEEECC
T ss_pred             ccccCceEEEEEEEEC
Confidence            2234567788888755

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.23  E-value=8.4e-12  Score=101.09  Aligned_cols=85  Identities=14%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             cEEEEEEEeCCCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeeccEEEEEEeecCCCCCCCCee
Q 020612          222 PVVIMLVIDRENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQPWPVGPNSMPCQ  299 (323)
Q Consensus       222 pvVivlV~~~~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~~v~~~gs~~~~~~~~~~~~~  299 (323)
                      ++++++|++. ++++||.||..  ...|+|+||+|.+|.+|+ .+++.||++||+|+++....++++..+.|+.   ...
T Consensus         5 ~v~~~vi~~~-~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh---~~~   79 (127)
T d1rrqa2           5 PLAVAVLADD-EGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSH---LVW   79 (127)
T ss_dssp             EEEEEEEEES-SSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSS---EEE
T ss_pred             EEEEEEEEEC-CCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCC---eEE
Confidence            4555666664 68999999864  457999999999998887 7899999999999998877777777666532   123


Q ss_pred             EEEEEEEEeecc
Q 020612          300 LMVGFYAYAKSF  311 (323)
Q Consensus       300 lmi~f~a~~~~~  311 (323)
                      .+..|.+....+
T Consensus        80 ~~~~~~~~~~~~   91 (127)
T d1rrqa2          80 QLTVFPGRLVHG   91 (127)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEECCC
Confidence            445666665543

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.12  E-value=2.5e-12  Score=112.65  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=51.5

Q ss_pred             CCccccccCCCCCCcccCCcccEEEEEEEeCCCCeEEEEeeccCCCCcccceeeecCCCCC-HHHHHHHHHHHHhCCeec
Q 020612          201 AGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGES-LEEAVRRETWEETGIEVG  279 (323)
Q Consensus       201 ~g~~~~C~~~~C~~~~ypr~~pvVivlV~~~~~~riLL~rr~~~~~g~w~lPgG~VE~GEs-~eeAa~REv~EEtGL~v~  279 (323)
                      .||+..|.  .  ..++|.  +.+++.++.. ...||+++|.   .|.|++|||+||+||+ +++||.||++||||+.+.
T Consensus        17 ~g~r~a~~--~--~~~~~~--~~~~~~~~~~-~~~vl~~~r~---~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~   86 (196)
T d1u20a1          17 EGYKHACH--A--LLHAPS--QAKLFDRVPI-RRVLLMMMRF---DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALA   86 (196)
T ss_dssp             SSCEEEEE--E--EEEEEC--CCEETTTEEC-CEEEEEEEET---TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGG
T ss_pred             CCcceEEE--E--EEEcCC--CceEEEEecC-CcEEEEEEec---CCcEECCccccCCCCCcHHHHHHHHHHHHhCccce
Confidence            66766664  1  234443  3333333332 4678887775   5899999999999995 799999999999999876


Q ss_pred             cEE
Q 020612          280 EVV  282 (323)
Q Consensus       280 ~v~  282 (323)
                      .++
T Consensus        87 ~~~   89 (196)
T d1u20a1          87 TVE   89 (196)
T ss_dssp             GCC
T ss_pred             eEE
Confidence            544

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8e-10  Score=101.90  Aligned_cols=43  Identities=21%  Similarity=0.421  Sum_probs=39.2

Q ss_pred             eEEEEeeccCCCCcccceeeecCCCCCHHHHHHHHHHHHhCCeec
Q 020612          235 RVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVG  279 (323)
Q Consensus       235 riLL~rr~~~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtGL~v~  279 (323)
                      ++||++|+.  .|.|.||||+||+||++++||+||+.||||+.+.
T Consensus       140 qvLlIkR~d--~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~  182 (292)
T d1q33a_         140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ  182 (292)
T ss_dssp             EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGG
T ss_pred             EEEEEEecC--CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccc
Confidence            589999876  6789999999999999999999999999999764

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=7.7e-08  Score=78.01  Aligned_cols=88  Identities=8%  Similarity=0.040  Sum_probs=60.8

Q ss_pred             EEEEEEEeC--CCCeEEEEeecc--CCCCcccceeeecCCCCCHHHHHHHHHHHHhC--CeeccEEEEEEeecCCCCCCC
Q 020612          223 VVIMLVIDR--ENDRVLLSRQSR--FVPRMWSCIAGFIEPGESLEEAVRRETWEETG--IEVGEVVYHTSQPWPVGPNSM  296 (323)
Q Consensus       223 vVivlV~~~--~~~riLL~rr~~--~~~g~w~lPgG~VE~GEs~eeAa~REv~EEtG--L~v~~v~~~gs~~~~~~~~~~  296 (323)
                      .++++|.+.  .+++|||.||..  ...|+|+||+|.++.||+..+++.||..+|.+  +.+....+++...+.|+.   
T Consensus        14 ~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH---   90 (142)
T d1x51a1          14 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH---   90 (142)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS---
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC---
Confidence            444444443  257999999964  45899999999999999998888776655554  455667777777776632   


Q ss_pred             CeeEEEEEEEEeeccCC
Q 020612          297 PCQLMVGFYAYAKSFEI  313 (323)
Q Consensus       297 ~~~lmi~f~a~~~~~~i  313 (323)
                      ....|..|.+.+..+.+
T Consensus        91 ~~~~~~v~~~~~~~~~~  107 (142)
T d1x51a1          91 IKLTYQVYGLALEGQTP  107 (142)
T ss_dssp             CEEEEEEEEEECSSCCC
T ss_pred             cceEEEEEEEEEeCCCc
Confidence            22445667776665443

>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=2.1e-05  Score=60.46  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=63.2

Q ss_pred             CCCeEEEEEeCCceeeecCCCCCCcceeeccccchhhHHHhhhcCcCcccccEEEeeeeeCCCeeEEEEecCCCCccccc
Q 020612           62 SPDFKVLPFRKGRPLTYSGPGETAPVWHLGWISLGDCKIFLANSGIELKEEALVYLGSRSADDVVYWAIDVSDGDSLASE  141 (323)
Q Consensus        62 ~~~~~~l~f~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Lg~~~~~~~~~~a~~~~~~~~~~~~  141 (323)
                      .-.+..++|++++.++.. +.       |..-+.+++.         ......++||..  ++.|+|+++.+.       
T Consensus         9 ~d~g~W~v~~~~~L~L~~-g~-------lP~g~~~~l~---------l~~~~~~~iG~~--~g~p~~~v~~~~-------   62 (97)
T d1vk6a3           9 LDHGWWVVSHEQKLWLPK-GE-------LPYGEAANFD---------LVGQRALQIGEW--QGEPVWLVQQQR-------   62 (97)
T ss_dssp             TCEEEEEEEETTEEECGG-GS-------CCEEEGGGGT---------CTTCEEEEEEES--SSSEEEEEECCC-------
T ss_pred             ccceEEEEEeCCEEEeeC-CC-------CCCCchhhcC---------CCcceEEEeeeE--CCeEEEEEeeCC-------
Confidence            346888999999998853 21       2223333331         134567899986  778999997542       


Q ss_pred             ccccccchhhhHHHhhhcchhhhhhhhHHHHHHHHHHHHhhhccCC
Q 020612          142 FGSKQLCFVELRTVMVATDWADQRAMADLAIAGHARALLEWHNVSR  187 (323)
Q Consensus       142 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~A~~l~~W~~~~~  187 (323)
                          +..|++||+++. .      +...+.++++|.++.+|.++||
T Consensus        63 ----~~~~~~LR~ll~-~------~~~lF~lagRA~Qi~~w~rtHr   97 (97)
T d1vk6a3          63 ----RHDMGSVRQVID-L------DVGLFQLAGRGVQLAEFYRSHK   97 (97)
T ss_dssp             ----SSCEECTTHHHH-H------CHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ----CCCccCHHHHhC-C------CHHHHHHHHHHHHHHHHHHhcC
Confidence                235789999864 2      2357899999999999999996

>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NADH pyrophosphatase intervening domain
family: NADH pyrophosphatase intervening domain
domain: NADH pyrophosphatase intervening domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=4.3e-05  Score=44.74  Aligned_cols=29  Identities=38%  Similarity=1.019  Sum_probs=27.5

Q ss_pred             CCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          188 FCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       188 fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      ||+.||+++.....+|+..|.  .|..++||
T Consensus         1 fCGYCGh~Mh~s~tEwa~LC~--hC~eRYYP   29 (29)
T d1vk6a4           1 YCGYCGHEMYPSKTEWAMLCS--HCRERYYP   29 (29)
T ss_dssp             BCTTTCCBEEECSSSSCEEES--SSSCEECC
T ss_pred             CccccCCccccchhHHHHHHH--HHHhccCC
Confidence            899999999999999999998  79999997

>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein S27a
domain: Ribosomal protein S27ae
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=92.96  E-value=0.024  Score=38.20  Aligned_cols=33  Identities=24%  Similarity=0.573  Sum_probs=28.3

Q ss_pred             ccCCCCCCCCCCCeeccCCccccccCCCCCCcccC
Q 020612          184 NVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYP  218 (323)
Q Consensus       184 ~~~~fC~~CG~~~~~~~~g~~~~C~~~~C~~~~yp  218 (323)
                      +..++||+||.-..+.+...+..|.  .|+...|-
T Consensus        16 r~~k~CP~CG~GvFmA~H~dR~~CG--KCgyTefk   48 (55)
T d2k4xa1          16 RKHRFCPRCGPGVFLAEHADRYSCG--RCGYTEFK   48 (55)
T ss_dssp             CSSCCCTTTTTTCCCEECSSEEECT--TTCCCEEC
T ss_pred             EecCcCcCCCCcEEeeecCCCcccc--CCcccEEe
Confidence            4578999999999888888899997  79988774

>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: NAD+-dependent DNA ligase, domain 3
domain: NAD+-dependent DNA ligase, domain 3
species: Thermus filiformis [TaxId: 276]

Probab=84.96  E-value=0.14  Score=42.27  Aligned_cols=27  Identities=30%  Similarity=0.898  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCeeccCCccccccCCCCCCc
Q 020612          187 RFCGHCGEKTIPKEAGKLKQCSNASCKKR  215 (323)
Q Consensus       187 ~fC~~CG~~~~~~~~g~~~~C~~~~C~~~  215 (323)
                      .+||.||+++...  |...+|+|+.|...
T Consensus         4 ~~CP~C~s~l~~e--~~~~~C~n~~Cpaq   30 (181)
T d1dgsa1           4 EACPECGHRLVKE--GKVHRCPNPLCPAK   30 (181)
T ss_dssp             SBCTTTCCBCEEE--TTEEECCCTTCGGG
T ss_pred             CCCCCCCCeeeec--CceeECCCCCCHHH
Confidence            5899999999853  44568999999753