Citrus Sinensis ID: 020661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL
ccccccccccHHHHHHHHHHcccHHHcccccccEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHcccEEEEEEccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccEEccccccc
HHcccEccccccHHHHHHHHHccEEEEEEccccEEEEEEEEHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHccccccHHHHHHccHHHHHHHHHHHccHHHEEEEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHcEEEcccccccccccHHHHHHHHHccccEEEEEEEEEccEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEccccccc
mifkgtekrTARDLEEEIENMGGhlnaytsreQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHatafqytplgrtilgpaqniKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLsadpttasqlvanepaiftgsevriidddipLAQFAVAFagaswtdpdSIALMVMQAMLGswnknsvggkhmgseLAQRVGINEIAESMMAFntnykdtglfgvyavakpdclDDLAYAIMYETTKLAYRVSEADVTRARNQVaaslptypgyldicllptfvgl
mifkgtekrtardLEEEIENMgghlnaytsREQTTYYAKVLDKDVNNALDILADilqnstfdqariTRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLsadpttasqlvanepAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVaaslptypgyldiCLLPTFVGL
MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRemeevegqteeVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAvkheevveqvkkLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL
************************LNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFV**
MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTK******************FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL
*********TARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL
**FKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA***TASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL
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MIFKGTEKRTxxxxxxxxxxxxxxxxxxxxxEQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLDICLLPTFVGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q42290531 Probable mitochondrial-pr yes no 0.944 0.574 0.842 1e-154
P11913476 Mitochondrial-processing N/A no 0.944 0.640 0.521 3e-86
Q3SZ71490 Mitochondrial-processing yes no 0.938 0.618 0.498 2e-85
Q5REK3489 Mitochondrial-processing yes no 0.938 0.619 0.495 3e-85
Q03346489 Mitochondrial-processing yes no 0.913 0.603 0.514 1e-84
O75439489 Mitochondrial-processing yes no 0.919 0.607 0.501 2e-84
Q9CXT8489 Mitochondrial-processing yes no 0.938 0.619 0.488 5e-82
Q4W6B5469 Mitochondrial-processing yes no 0.975 0.671 0.470 4e-80
Q9Y8B5466 Mitochondrial-processing N/A no 0.944 0.654 0.477 1e-78
Q00302465 Mitochondrial-processing N/A no 0.922 0.640 0.513 8e-77
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function desciption
 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/305 (84%), Positives = 283/305 (92%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           MIFKGT++RT R LEEEIE++GGHLNAYTSREQTTYYAKVLD +VN ALD+LADILQNS 
Sbjct: 146 MIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSK 205

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
           F++ RI RERDVILREM+EVEGQT+EV+ DHLHATAFQYTPLGRTILGPAQN+K+IT+E 
Sbjct: 206 FEEQRINRERDVILREMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITRED 265

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           LQNYI THYTA RMVIAA+GAVKHEEVVEQVKKLFTKLS+DPTT SQLVANEPA FTGSE
Sbjct: 266 LQNYIKTHYTASRMVIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSE 325

Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
           VR+IDDD+PLAQFAVAF GASWTDPDS+ALMVMQ MLGSWNKN  GGKH+GS+L QRV I
Sbjct: 326 VRMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAI 385

Query: 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 300
           NEIAES+MAFNTNYKDTGLFGVYAVAK DCLDDL+YAIMYE TKLAYRVS+ADVTRARNQ
Sbjct: 386 NEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQ 445

Query: 301 VAASL 305
           + +SL
Sbjct: 446 LKSSL 450
Cleaves presequences (transit peptides) from mitochondrial protein precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 6EC: 4
>sp|P11913|MPPB_NEUCR Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pep PE=1 SV=1 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q5REK3|MPPB_PONAB Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3 Back     alignment and function description
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2 Back     alignment and function description
>sp|Q9CXT8|MPPB_MOUSE Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1 Back     alignment and function description
>sp|Q4W6B5|MPPB_DICDI Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1 Back     alignment and function description
>sp|Q9Y8B5|MPPB_LENED Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1 Back     alignment and function description
>sp|Q00302|MPPB_BLAEM Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
12802327 528 mitochondrial processing peptidase beta 0.944 0.577 0.904 1e-163
449438845 528 PREDICTED: probable mitochondrial-proces 0.944 0.577 0.904 1e-163
147765656 523 hypothetical protein VITISV_006460 [Viti 0.944 0.583 0.901 1e-162
225452974 523 PREDICTED: probable mitochondrial-proces 0.944 0.583 0.901 1e-162
449483328 440 PREDICTED: probable mitochondrial-proces 0.916 0.672 0.912 1e-160
356527314 528 PREDICTED: probable mitochondrial-proces 0.944 0.577 0.885 1e-159
356558971 523 PREDICTED: probable mitochondrial-proces 0.944 0.583 0.881 1e-157
13959067 527 mitochondrial processing peptidase [Avic 0.944 0.578 0.866 1e-156
356567781 527 PREDICTED: probable mitochondrial-proces 0.944 0.578 0.868 1e-156
224141065 527 predicted protein [Populus trichocarpa] 0.944 0.578 0.859 1e-154
>gi|12802327|gb|AAK07827.1|AF297643_1 mitochondrial processing peptidase beta subunit [Cucumis melo] Back     alignment and taxonomy information
 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/305 (90%), Positives = 293/305 (96%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           MIFKGTEKR+AR LEEEIENMGGHLNAYTSREQTTYYAKVLDKDV  ALDILADILQNS 
Sbjct: 143 MIFKGTEKRSARQLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVPKALDILADILQNSK 202

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
           FD+ RI+RERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNI+TITK+H
Sbjct: 203 FDEHRISRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIRTITKDH 262

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           LQ+YI THYTAPRMVIAASGAVKHE+ VEQVKKLFTKLSA+PTTA+QLVA EPAIFTGSE
Sbjct: 263 LQSYIQTHYTAPRMVIAASGAVKHEDFVEQVKKLFTKLSAEPTTAAQLVAKEPAIFTGSE 322

Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
           VRI+DDD+PLAQFA+AF GASWTDPDSIALMVMQAMLGSWNK++ GGKHMGSELAQRV I
Sbjct: 323 VRIVDDDVPLAQFAIAFNGASWTDPDSIALMVMQAMLGSWNKSAGGGKHMGSELAQRVAI 382

Query: 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 300
           NE+AESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ
Sbjct: 383 NEVAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 442

Query: 301 VAASL 305
           + +SL
Sbjct: 443 LKSSL 447

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449438845|ref|XP_004137198.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147765656|emb|CAN71501.1| hypothetical protein VITISV_006460 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452974|ref|XP_002284370.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta [Vitis vinifera] Back     alignment and taxonomy information
>gi|449483328|ref|XP_004156557.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356527314|ref|XP_003532256.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|356558971|ref|XP_003547775.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|13959067|gb|AAK51086.1|AF363285_1 mitochondrial processing peptidase [Avicennia marina] Back     alignment and taxonomy information
>gi|356567781|ref|XP_003552094.1| PREDICTED: probable mitochondrial-processing peptidase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|224141065|ref|XP_002323895.1| predicted protein [Populus trichocarpa] gi|222866897|gb|EEF04028.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
UNIPROTKB|G4N7C7473 MGG_03600 "Mitochondrial-proce 0.944 0.644 0.482 7e-70
UNIPROTKB|F1SB55489 PMPCB "Uncharacterized protein 0.965 0.638 0.460 1.1e-69
UNIPROTKB|I3LBK3493 PMPCB "Uncharacterized protein 0.965 0.632 0.460 1.1e-69
UNIPROTKB|I3LHS1489 LOC100624058 "Uncharacterized 0.965 0.638 0.460 1.1e-69
UNIPROTKB|Q3SZ71490 PMPCB "Mitochondrial-processin 0.969 0.638 0.458 1.4e-69
UNIPROTKB|F1PUK2513 PMPCB "Uncharacterized protein 0.965 0.608 0.460 1.4e-69
UNIPROTKB|F1P3S2471 PMPCB "Uncharacterized protein 0.938 0.643 0.472 2.4e-69
RGD|621297489 Pmpcb "peptidase (mitochondria 0.965 0.638 0.466 6.3e-69
ZFIN|ZDB-GENE-050220-10470 pmpcb "peptidase (mitochondria 0.962 0.661 0.468 6.3e-69
ASPGD|ASPL0000055042479 AN0747 [Emericella nidulans (t 0.944 0.636 0.477 1e-68
UNIPROTKB|G4N7C7 MGG_03600 "Mitochondrial-processing peptidase subunit beta" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 148/307 (48%), Positives = 197/307 (64%)

Query:     1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
             + FKGT++RT   LE EIENMG HLNAYTSRE T Y+AK L++D    +DILADILQNS 
Sbjct:    87 LAFKGTQRRTQHQLELEIENMGAHLNAYTSRENTVYFAKSLNEDAPKCVDILADILQNSK 146

Query:    61 FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
              D+A I RERDVILR           V+FDHLHATAFQ+ PLGRTILGP +NI+ IT+  
Sbjct:   147 LDEAAIERERDVILRESEEVEKQLEEVVFDHLHATAFQHQPLGRTILGPRENIRDITRTE 206

Query:   121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPT-TASQLVANEPAIFTGS 179
             L NYI  +YTA RMV+AA+G              F  L  +   T++ + +     F GS
Sbjct:   207 LVNYIKQNYTADRMVLAAAGGVPHEQLVELADKYFANLPGETAKTSAYIQSKAKPDFIGS 266

Query:   180 EVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239
             +VRI DD IP A  A+A  G SW+D D    +V QA++G+++K      H GS+L+  V 
Sbjct:   267 DVRIRDDTIPTANIAIAVEGVSWSDDDYFTALVTQAIVGNYDKAMGNAPHQGSKLSGFVH 326

Query:   240 INEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRAR 298
              N++A S M+F+T+Y DTGL+G+Y V  K   +DDL +  + E ++L+  VSEA+V RA+
Sbjct:   327 SNDLANSFMSFSTSYSDTGLWGIYLVTDKLTRVDDLVHFALREWSRLSQSVSEAEVERAK 386

Query:   299 NQVAASL 305
              Q+ AS+
Sbjct:   387 AQLKASI 393
GO:0043581 "mycelium development" evidence=IEP
UNIPROTKB|F1SB55 PMPCB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBK3 PMPCB "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHS1 LOC100624058 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZ71 PMPCB "Mitochondrial-processing peptidase subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUK2 PMPCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3S2 PMPCB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621297 Pmpcb "peptidase (mitochondrial processing) beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050220-10 pmpcb "peptidase (mitochondrial processing) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000055042 AN0747 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q42290MPPB_ARATH3, ., 4, ., 2, 4, ., 6, 40.84260.94420.5743yesno
O75439MPPB_HUMAN3, ., 4, ., 2, 4, ., 6, 40.50160.91950.6073yesno
Q03346MPPB_RAT3, ., 4, ., 2, 4, ., 6, 40.51490.91330.6032yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.240.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-63
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 4e-42
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-40
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 6e-08
TIGR02110 696 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis 8e-04
COG1026978 COG1026, COG1026, Predicted Zn-dependent peptidase 0.001
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  207 bits (528), Expect = 1e-63
 Identities = 97/314 (30%), Positives = 153/314 (48%), Gaps = 18/314 (5%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           M FKGT    + +L E  E +GG LNA+TS + T YY  VL  +++ ALD+LADIL N T
Sbjct: 66  MAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPT 125

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
           FD+  + RE+ VIL E+   +   +++ F+ L    +   PLGR ILG  ++I+ IT+E 
Sbjct: 126 FDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITRED 185

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           L+++    Y    MV+   G V  EEVVE ++K F  L          +  EP +     
Sbjct: 186 LKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGA--APPPKIPPEPPLGPERV 243

Query: 181 VRI---IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQR 237
           VR+      D+  A  A+ + G  +  PD  A +++         N + G    S L Q 
Sbjct: 244 VRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLL--------NGLLGGGFSSRLFQE 295

Query: 238 VGINE-IAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLA--YAIMYETTK--LAYRVSEA 292
           +     +A S+ +F+    D+GLF +YA   P+  +  A     + +  K  L    +E 
Sbjct: 296 LREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEE 355

Query: 293 DVTRARNQVAASLP 306
           ++  A+  +   L 
Sbjct: 356 ELDAAKQLLIGLLL 369

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.96
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.95
PRK15101961 protease3; Provisional 99.94
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.93
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.91
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.88
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.84
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.81
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.8
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.79
PTZ004321119 falcilysin; Provisional 99.77
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.71
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.62
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.47
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 99.33
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 97.71
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 97.23
KOG2067472 consensus Mitochondrial processing peptidase, alph 97.07
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 96.56
KOG0960467 consensus Mitochondrial processing peptidase, beta 96.3
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 93.72
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-47  Score=312.63  Aligned_cols=312  Identities=54%  Similarity=0.846  Sum_probs=294.4

Q ss_pred             CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661            1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV   80 (323)
Q Consensus         1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~   80 (323)
                      |+|+||++++...+..+++..|+.+|++|++|.+.|++++.++++++++++|++++.+..+.+..++++|..+++|++..
T Consensus        82 laFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqev  161 (467)
T KOG0960|consen   82 LAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEV  161 (467)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661           81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA  160 (323)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~  160 (323)
                      ..+......+.++...|.++|+++++.|+.+.|++|+.+||++|.+.+|.+++|++..+|.++++++.++++++|+.++.
T Consensus       162 d~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~  241 (467)
T KOG0960|consen  162 DKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSK  241 (467)
T ss_pred             HhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCCcccccccCCCccccCCceeeecCCCCceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 020661          161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI  240 (323)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lre  240 (323)
                      ...+..+... +++.|.+.+++...++.|..++.+++-+++|++||+.++.|.++++|.|.++.|.|....++|-+.+-+
T Consensus       242 ~~~~~~~~~~-~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~  320 (467)
T KOG0960|consen  242 LQTGDKVPLV-PPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQ  320 (467)
T ss_pred             cccCcCCCCC-CCccccCceeeecCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHH
Confidence            4433322221 466789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceehhcccccCCCCcccEEEEeec-CcccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHccCCCCCCCC
Q 020661          241 NEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQVAASLPTYPGYLD  313 (323)
Q Consensus       241 ~g~~y~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~is~~el~~ak~~~~~~~~~~~~~~~  313 (323)
                      ..++.++.+++..|.+.|+|++|+.+ ++..++.++..+..+..+|..-+|+.|+++||.+++.++...+|...
T Consensus       321 ~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgtt  394 (467)
T KOG0960|consen  321 DQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTT  394 (467)
T ss_pred             HHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCC
Confidence            89999999999999999999999999 67999999999999999998889999999999999999999888754

>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 5e-65
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-62
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-62
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 2e-62
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 3e-62
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 3e-56
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 3e-56
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 5e-30
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-18
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 3e-18
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 4e-18
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 7e-18
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 1e-13
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-13
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 2e-13
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 1e-11
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 2e-11
3eoq_A406 The Crystal Structure Of Putative Zinc Protease Bet 6e-10
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 6e-06
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 6e-06
3amj_B424 The Crystal Structure Of The Heterodimer Of M16b Pe 2e-04
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           + FKGT+KR     E+E+E+MG H N YTSREQT +Y K L KD+   +++LAD++QN  
Sbjct: 62  LAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCA 121
Query: 61  FDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
            ++++I +ER VIL+           V FD+LHATAFQ T L RT+ G  +NIK +T+  
Sbjct: 122 LEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRAD 181
Query: 121 LQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAI-FTGS 179
           L +YI TH+ APRMV+AA+G              F+ +S   T     V   P   FTGS
Sbjct: 182 LASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSF--TYKEDAVPILPRCRFTGS 239
Query: 180 EVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239
           E+R  DD +P+A  A+A  G  W DPD++ L V  A++G +++   GGKH+ S LA    
Sbjct: 240 EIRARDDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAV 299
Query: 240 INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARN 299
            +++  S   FNT+Y DTGLFG + VA P  +DD+ +    E  +L    +E++V RA+N
Sbjct: 300 EHKLCHSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKN 359
Query: 300 QVAASL 305
            + +++
Sbjct: 360 HLRSAM 365
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta- Subunit From Thermus Thermophilus Hb8 Length = 406 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 424 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-143
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-142
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-135
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-135
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-131
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-129
3eoq_A406 Putative zinc protease; two similar domains of bet 1e-128
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-100
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-63
3gwb_A434 Peptidase M16 inactive domain family protein; pept 4e-57
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 7e-56
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 3e-46
3go9_A492 Insulinase family protease; IDP00573, structural g 4e-38
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-24
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-23
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 5e-16
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 4e-09
3ih6_A197 Putative zinc protease; bordetella pertussis toham 2e-13
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 9e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
 Score =  410 bits (1057), Expect = e-143
 Identities = 118/305 (38%), Positives = 193/305 (63%), Gaps = 1/305 (0%)

Query: 1   MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60
           + FKGT+ R    LE+E+E+MG HLNAY++RE T YY K L KD+  A+++LADI+QN +
Sbjct: 62  LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 121

Query: 61  FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEH 120
            + ++I +ERDVIL+E++E +    +V+F++LHATAFQ TPL +++ GP++N++ +++  
Sbjct: 122 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 181

Query: 121 LQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180
           L  Y+  HY APRMV+AA+G ++H ++++  +K F+ LS        +    P  FTGS+
Sbjct: 182 LTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDE-DAVPTLSPCRFTGSQ 240

Query: 181 VRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240
           +   +D +PLA  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     
Sbjct: 241 ICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT 300

Query: 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQ 300
           N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V R +N 
Sbjct: 301 NKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNL 360

Query: 301 VAASL 305
           +  +L
Sbjct: 361 LRNAL 365
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.96
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.94
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.93
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.92
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.72
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.35
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 98.13
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.11
3eoq_A406 Putative zinc protease; two similar domains of bet 98.09
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 98.03
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 98.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.96
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 97.91
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.89
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.61
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 97.2
3go9_A492 Insulinase family protease; IDP00573, structural g 96.93
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 91.13
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=1.4e-48  Score=349.30  Aligned_cols=300  Identities=23%  Similarity=0.340  Sum_probs=273.6

Q ss_pred             CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661            1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV   80 (323)
Q Consensus         1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~   80 (323)
                      |+|+||++++..++.+.++.+|+.+|++|+.++|.|++++++++++.+|+++++++ +|.|++++|+++|..+++|++..
T Consensus        51 mlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~  129 (406)
T 3eoq_A           51 MVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARY  129 (406)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661           81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA  160 (323)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~  160 (323)
                      .++|...+.+.+...+|+++||++++.|+.+.|++++.++|++||+++|.|+||+++|+||++++++.++++++|+.|+.
T Consensus       130 ~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~  209 (406)
T 3eoq_A          130 QDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPE  209 (406)
T ss_dssp             HHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcccccccCCCccccCCceeeecCCC-CceEEEEEeecCCCCCcchHHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc
Q 020661          161 DPTTASQLVANEPAIFTGSEVRIIDDDI-PLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG  239 (323)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~vl~~~l~~~~~~~~~~~~~~s~L~~~lr  239 (323)
                      .+.+.. .   .+.... +.......+. +++++.++|++++.+++++.++.|++.+||+         ++++||+++||
T Consensus       210 ~~~~~~-~---~~~~~~-~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg---------~~~srL~~~lr  275 (406)
T 3eoq_A          210 GEAERA-Y---PPLTPA-FGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGE---------EGSGRLHFALV  275 (406)
T ss_dssp             CCCCCC-C---CCCCCC-CEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHC---------TTTSHHHHHTT
T ss_pred             CCCCCC-C---CCCCCC-CceEEEecCCccceEEEEEecCCCCCCchHHHHHHHHHHhCC---------CcchHHHHHHH
Confidence            544322 1   111122 2333334455 8999999999999999999999999999985         46899999999


Q ss_pred             cccceehhcccccCCCCcccEEEEeecCcccHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHccCCCCCCCCcc
Q 020661          240 INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQVAASLPTYPGYLDIC  315 (323)
Q Consensus       240 e~g~~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~is~~el~~ak~~~~~~~~~~~~~~~~~  315 (323)
                      ++|++|++++.+..+.+.|.|.+++.+++++..++++.+.++++++++ +++++||+++|++++.++..+.+++..+
T Consensus       276 e~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~  352 (406)
T 3eoq_A          276 DKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQR  352 (406)
T ss_dssp             TTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999988878888999999999999999999999999999999 9999999999999999998888876544
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 2e-30
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 3e-24
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 1e-22
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 2e-22
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 6e-20
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 1e-19
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 8e-19
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 1e-18
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 5e-17
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 1e-16
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 4e-16
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 3e-15
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 3e-15
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 2e-14
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 7e-13
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 172 EPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMG 231
           + A F GSEVR+ DD +P A  ++A  G     P+     +   + GS+N      +  G
Sbjct: 1   KKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQG 60

Query: 232 SELAQRVGINEIAESMMAFNTNYKDTGLFGVYA-VAKPDCLDDLAYAIMYETTKLAYRVS 290
            +L   +   ++ ++   F+ +YKD+GL+G          +DDL +  + +  +L   V+
Sbjct: 61  IKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT 120

Query: 291 EADVTRARNQVAASLPTY 308
           + +V RA++ +   L   
Sbjct: 121 DTEVERAKSLLKLQLGQL 138
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.97
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.96
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.96
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.95
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.94
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.93
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.93
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.93
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.86
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.83
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.8
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.74
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.73
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.7
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.58
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.99
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.95
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.71
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.58
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.52
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.52
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.48
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.06
d2fgea3 268 Presequence protease 1, PREP1 {Thale cress (Arabid 97.98
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.62
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.51
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.28
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 91.94
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 91.34
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 90.79
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 89.7
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 82.92
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 82.02
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-29  Score=202.10  Aligned_cols=161  Identities=27%  Similarity=0.423  Sum_probs=156.7

Q ss_pred             CccccCCCCChHHHHHHHHhcCCeeeeeecceeEEEEEEeccccHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHh
Q 020661            1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV   80 (323)
Q Consensus         1 ~~f~Gt~~~~~~~~~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~~~~~~~~~~~~~~~~   80 (323)
                      |+|+||++++..++.+.++..|+.++++++.+++.|.+++++++++.+|+++++++.+|.|++++++++|..+..+++..
T Consensus        54 ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~  133 (220)
T d1hr6a1          54 LAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEV  133 (220)
T ss_dssp             TTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccchHHHHHHHHHhcchhhhcccccceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCHHHHHHHHHhhCCCCceEEEEEcCCCHHHHHHHHHHHhcCCCC
Q 020661           81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA  160 (323)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~v~~~~~~~~~  160 (323)
                      ..+|...+.+.+...+|+++||+++..|+.+.|++++.++|++||+++|+|+||+++|+| ++++++.++++++|+.||.
T Consensus       134 ~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~~~i~~it~~dl~~f~~~~y~~~n~~l~i~G-~~~~~~~~~i~~~fg~~~~  212 (220)
T d1hr6a1         134 WMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQS  212 (220)
T ss_dssp             TTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCC
T ss_pred             hccchhhhhhhhccccccccCCcccccccHHHHhhCCHHHHHHHHHHhCCcccEEEEEEC-CCHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999 8999999999999999987


Q ss_pred             CC
Q 020661          161 DP  162 (323)
Q Consensus       161 ~~  162 (323)
                      ..
T Consensus       213 ~~  214 (220)
T d1hr6a1         213 TH  214 (220)
T ss_dssp             CC
T ss_pred             CC
Confidence            54
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure