Citrus Sinensis ID: 020667
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| 255574526 | 1232 | Disease resistance protein RFL1, putativ | 0.869 | 0.228 | 0.345 | 2e-37 | |
| 359488101 | 1677 | PREDICTED: disease resistance protein At | 0.659 | 0.127 | 0.350 | 2e-29 | |
| 147787802 | 1517 | hypothetical protein VITISV_005047 [Viti | 0.798 | 0.170 | 0.332 | 3e-29 | |
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.770 | 0.185 | 0.351 | 5e-28 | |
| 357439633 | 1039 | Rpp4 candidate [Medicago truncatula] gi| | 0.575 | 0.179 | 0.409 | 8e-28 | |
| 359488108 | 1436 | PREDICTED: disease resistance protein At | 0.863 | 0.194 | 0.298 | 1e-27 | |
| 357456329 | 1280 | Cc-nbs resistance protein [Medicago trun | 0.876 | 0.221 | 0.300 | 2e-27 | |
| 302143659 | 922 | unnamed protein product [Vitis vinifera] | 0.780 | 0.273 | 0.309 | 3e-27 | |
| 224110992 | 2359 | cc-nbs-lrr resistance protein [Populus t | 0.504 | 0.069 | 0.431 | 6e-27 | |
| 302143647 | 759 | unnamed protein product [Vitis vinifera] | 0.761 | 0.324 | 0.327 | 7e-27 |
| >gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 169/298 (56%), Gaps = 17/298 (5%)
Query: 1 MLYSINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP 60
+L SI E IW + +S +L L + +C + +YLF+ S++ SF+RL+++EI C
Sbjct: 927 ILSSIPCETIWHGE---LSTACSHLKSLIVENCRDWKYLFTLSMIRSFIRLEKLEICNCE 983
Query: 61 VLKELIVMDN-QEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119
++ +I + EE +MFP+L +LK+ NL + +S + G++E PSL+ L ++
Sbjct: 984 FMEGIIRTEEFSEEEGMIKLMFPRLNFLKLKNLSDVSSLRIGH-GLIECPSLRHLELNRL 1042
Query: 120 PKFMERYNRTTN---------ILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT 170
++R + IL + C++L +L S SFQNLT L V C + ++T
Sbjct: 1043 NDLKNIWSRNIHFDPFLQNVEILKVQFCENLTNLAMPSASFQNLTCLEVLHCSKVINLVT 1102
Query: 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230
S+A ++V+L M IE CD +T IV + E+I F +LK L L+ L++LTSFC
Sbjct: 1103 SSVATSMVQLVTMHIEDCDMLTGIVADEKDETAGEII-FTKLKTLALVRLQNLTSFCLRG 1161
Query: 231 CAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEV--QWPGEARWAWKDDLNTTIQKV 286
F FPSLE + + CP +++FS G + KL V ++P E +W W+ +LN TI+++
Sbjct: 1162 NTFNFPSLEEVTVAKCPKLRVFSPGITIASKLERVLIEFPSEDKWRWEGNLNATIEQM 1219
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 134/234 (57%), Gaps = 21/234 (8%)
Query: 51 LQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPS 110
L+ + +VEC +KE+ ++ +E +N +L+ +++ +L P+
Sbjct: 1301 LEVLNVVECSSVKEVFQLEGLDE-ENQAKRLGRLREIRLHDL----------------PA 1343
Query: 111 LKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT 170
L LW ++ ++ L E CD L++LVPS SFQNL L V C L+ +++
Sbjct: 1344 LTHLWKENSKSGLDL--QSLESLEEWNCDSLINLVPSPVSFQNLATLDVHSCGSLRSLIS 1401
Query: 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230
S+AK+LV+L+ ++I D + E+V + A DE ITF +L+ ++LL L +LTSF SG
Sbjct: 1402 PSVAKSLVKLKTLKIRRSDMMEEVVANEGGEAIDE-ITFYKLQHMELLYLPNLTSFSSGG 1460
Query: 231 CAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQ 284
F FPSLE++++ +CP MK+FS +TP+L ++ G+ W W+DD NTTI
Sbjct: 1461 YIFSFPSLEQMLVKECPKMKMFSPSLVTTPRLERIKV-GDDEWPWQDDPNTTIH 1513
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 34/292 (11%)
Query: 51 LQRIEIVECPVLKELIVMDNQE----ERKNNNVMFPQL-------QYLKMFNLENFTSFC 99
L ++ VE P L+EL + N++ + FP+L Q+ ++F LE +
Sbjct: 1174 LSLLQPVEFPNLEELTLDHNKDTEIWPEQFPVDSFPRLRVLDDVIQFKEVFQLEGLDNEN 1233
Query: 100 TSNLGILEFPSLKELWISGCPKFMERYNRTTNI---------LTERGCDHLVDLVPSSTS 150
+ L+E+W+ P+ + + L R C L++LVPSS S
Sbjct: 1234 QAK----RLGRLREIWLCDLPELTHLWKENSKPGLDLLSLKSLEVRNCVRLINLVPSSAS 1289
Query: 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFR 210
FQNL L V C L+ +++ S+AK+LV+L+ ++I + E+V ++ A DE I F
Sbjct: 1290 FQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGGSHMMEEVVANEEGEAADE-IAFC 1348
Query: 211 ELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGE 270
+L+ + L L +LTSF SG F FPSLE +VL CP MKIFS G +TP+L ++ G+
Sbjct: 1349 KLQHMALKCLSNLTSFSSGGYIFSFPSLEHMVLKKCPKMKIFSPGLVTTPRLERIKV-GD 1407
Query: 271 ARWAWKDDLNTTIQKVI--------FPAMVAGVWSDDGGLEEDGDTEKEDEH 314
W W+DDLNTTI + M+ + GLE G T KE ++
Sbjct: 1408 DEWHWQDDLNTTIHNLFINKHDEETIGKMITRFTNIVNGLEALGKTYKESKN 1459
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 149/279 (53%), Gaps = 30/279 (10%)
Query: 10 IWLSQVTVMS-CGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVM 68
IW Q V S C ++ L R + + SS++ L+++ + C +KE++ +
Sbjct: 1016 IWQEQFPVESFCRLRVLSICEYRDIL---VVIPSSMLQRLHTLEKLTVRSCGSVKEVVQL 1072
Query: 69 DNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC---PKFMER 125
+ + +N+ +L+ L++ +L P LK LW P F
Sbjct: 1073 EGLVDEENHFRALARLRELELNDL----------------PELKYLWKENSNVGPHF--- 1113
Query: 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEI 185
+ IL CD+L++LVPSS SF NL +L +S C L +L IAK+LV+ + +I
Sbjct: 1114 --QNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCCSLINLLPPLIAKSLVQHKIFKI 1171
Query: 186 ESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245
D + E+V + A DE ITF +L+E++L L +LTSFCSG + FP LER+V+++
Sbjct: 1172 GRSDMMKEVVANEGENAGDE-ITFCKLEEIELCVLPNLTSFCSGVYSLSFPVLERVVVEE 1230
Query: 246 CPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQ 284
CP MKIFS+G TP+L V+ G + WKDDLNTTI
Sbjct: 1231 CPKMKIFSQGLLVTPRLDRVEV-GNNKEHWKDDLNTTIH 1268
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 116/193 (60%), Gaps = 7/193 (3%)
Query: 96 TSFCTSNLGILEFPSLKELWISGCP--KFMERYNRTTNILTERGCDHLVDLVPSSTSFQN 153
TS NL + E +LK +W P M +Y L+ R C L+ LVPSSTSF N
Sbjct: 844 TSKQIRNLWLFELENLKHIWQEVFPLDHPMLQYLED---LSVRNCPCLISLVPSSTSFTN 900
Query: 154 LTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELK 213
L NL V CK + ++T S AK+L++L ++I++C+++ ++V +D+ A++ +I F L+
Sbjct: 901 LINLTVDNCKEMIYLITSSTAKSLIQLTTLKIKNCEKMLDVVKIDEEKAEENII-FENLE 959
Query: 214 ELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARW 273
LK ++L SL SFC AF FPSL R V+ CP MKIFS G + P L ++ E +
Sbjct: 960 YLKFISLSSLRSFCYEKQAFIFPSLLRFVVKGCPQMKIFSSGVTVAPYLTRIE-TDEGKM 1018
Query: 274 AWKDDLNTTIQKV 286
WK DLNTTI+++
Sbjct: 1019 RWKGDLNTTIEEL 1031
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 23/302 (7%)
Query: 10 IWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMD 69
IW Q V S ++H+ ++ + S ++ L+ +++ C +KE+ ++
Sbjct: 1148 IWPEQFPVDSFPRLRVLHV--HDYRDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLE 1205
Query: 70 NQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRT 129
+E +N +L+ +++ +L P L LW ++ ++
Sbjct: 1206 GLDE-ENQAKRLGRLREIELHDL----------------PGLTRLWKENSEPGLDL--QS 1246
Query: 130 TNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189
L C L++LVPSS SFQNL L V C L+ +++ S+AK+LV+L+ ++I D
Sbjct: 1247 LESLEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSD 1306
Query: 190 RITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSM 249
+ E+V + A DE ITF +L+ ++LL L +LTSF SG F FPSLE++++ +CP M
Sbjct: 1307 MMEEVVANEGGEATDE-ITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKM 1365
Query: 250 KIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKVIFPAMVAGVWSDDGGLEEDGDTE 309
K+FS + P+L ++ G+ W W+DDLNT I A + G +G+ E
Sbjct: 1366 KMFSPSLVTPPRLKRIKV-GDEEWPWQDDLNTAIHNSFINAHGNDIAECFGSETANGNVE 1424
Query: 310 KE 311
E
Sbjct: 1425 AE 1426
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357456329|ref|XP_003598445.1| Cc-nbs resistance protein [Medicago truncatula] gi|355487493|gb|AES68696.1| Cc-nbs resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 53/336 (15%)
Query: 2 LYSINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPV 61
LYSINV+RIW +++ SC QNL +LT+ C +L++LFS S+ V+LQ + I C +
Sbjct: 935 LYSINVQRIWDDKLSANSC-FQNLTNLTVDGCESLKHLFSFSVAEKLVKLQHLLISSCKL 993
Query: 62 LKELIVMDNQEE-----RKNNNV----MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLK 112
+ ++ V + RK++ V +FP L+ L + +++N S + L F LK
Sbjct: 994 VDKIFVREETTHHHLHIRKSHPVEMVPIFPNLETLVISHMDNLKSIWPNQLIQTSFCKLK 1053
Query: 113 ELWISGCPKFMERY-----NRTTNI----------------------------LTERGCD 139
+L I C + + + N+ NI L
Sbjct: 1054 KLEIISCDQLLSVFPSHVLNKLQNIESLNLWHCLAVKVIYEVNGISEEELEIPLRNLSLG 1113
Query: 140 HLVDLV-------PSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRIT 192
HL +L FQNL+ + + C+ L V FS+AK L++L+ +EI C +
Sbjct: 1114 HLPNLKYLWNKDPQGKIKFQNLSMVKATKCESLNHVFPFSVAKDLLQLQVLEISDCG-VE 1172
Query: 193 EIVLVDDVAAKDEV-ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKI 251
EI+ D ++++ + F L LK LNL+ L FCSGN F+FP L +L + +CP+M+
Sbjct: 1173 EIIAKDQGEVEEDLGLVFSRLVTLKFLNLQELRCFCSGNHNFRFPLLNKLYVVECPAMET 1232
Query: 252 FSEGNSSTPKLHEVQWPGEARWAW-KDDLNTTIQKV 286
FS G L + + + DLNTTI+ +
Sbjct: 1233 FSHGILRASILRRICLNENGDQCYLEADLNTTIRNI 1268
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 145/275 (52%), Gaps = 23/275 (8%)
Query: 10 IWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMD 69
IW Q V S ++H+ ++ + S ++ L+ +++ C +KE+ ++
Sbjct: 661 IWPEQFPVDSFPRLRVLHV--HDYRDILVVIPSFMLQRLHNLEVLKVGSCSSVKEVFQLE 718
Query: 70 NQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRT 129
+E +N +L+ +++ +L P L LW ++ ++
Sbjct: 719 GLDE-ENQAKRLGRLREIELHDL----------------PGLTRLWKENSEPGLDL--QS 759
Query: 130 TNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189
L C L++LVPSS SFQNL L V C L+ +++ S+AK+LV+L+ ++I D
Sbjct: 760 LESLEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSD 819
Query: 190 RITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSM 249
+ E+V + A DE ITF +L+ ++LL L +LTSF SG F FPSLE++++ +CP M
Sbjct: 820 MMEEVVANEGGEATDE-ITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKM 878
Query: 250 KIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQ 284
K+FS + P+L ++ G+ W W+DDLNT I
Sbjct: 879 KMFSPSLVTPPRLKRIKV-GDEEWPWQDDLNTAIH 912
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 6/169 (3%)
Query: 133 LTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRIT 192
L + C+ LV+L PS+ F NL L V C GL +LT S AK+L +L + + +C +T
Sbjct: 1497 LKMQSCNSLVNLAPSTVLFHNLETLDVHSCHGLSNLLTSSTAKSLGQLVKLIVVNCKLVT 1556
Query: 193 EIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIF 252
EIV D++I F +L+ L+L+ LE+LTSFC GN F FPSL+ +V++ CP M+IF
Sbjct: 1557 EIVAKQGGEINDDII-FSKLEYLELVRLENLTSFCPGNYNFIFPSLKGMVVEQCPKMRIF 1615
Query: 253 SEGNSSTPKLHEVQWPGEA--RWAWKDDLNTTIQKVIFPAMVA--GVWS 297
S+G SSTPKL V W ++ W +LN T+Q+ ++ MV G+WS
Sbjct: 1616 SQGISSTPKLQGVYWKKDSMNEKCWHGNLNATLQQ-LYTKMVGCNGIWS 1663
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 145/296 (48%), Gaps = 50/296 (16%)
Query: 37 RYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDN------QEERKNNNVMFPQLQYLKMF 90
R+ S + S L ++ V P L+ELI+ DN QE+ ++ FP+L+YLK++
Sbjct: 447 RHHEGSFDMPSLQPLFLLQQVALPYLEELILNDNGNTEIWQEQFPMDS--FPRLRYLKVY 504
Query: 91 ------------------NLENF-TSFCTSNLGILEFPSL------------KELWISGC 119
NLE C+S I + L +E+W+
Sbjct: 505 GYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIFQLEGLDEENQAQRLGRLREIWLRDL 564
Query: 120 PKFMERYNRTTNILTER---------GCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT 170
P + + + + CD L+ LVP S SFQNL L V C L+ +++
Sbjct: 565 PALTHLWKENSKSILDLQSLESLEVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSLIS 624
Query: 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230
S+AK+LV+L ++I + E+V + A DE I F +L+ + LL L +LTSF SG
Sbjct: 625 PSVAKSLVKLRKLKIGGLHMMEEVVANEGGEAVDE-IAFYKLQHMVLLCLPNLTSFNSGG 683
Query: 231 CAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKV 286
F FPSLE +V+++CP MKIFS +TPKL V+ + W W +DLNTTI +
Sbjct: 684 YIFSFPSLEHMVVEECPKMKIFSPSLVTTPKLERVEV-ADDEWHWHNDLNTTIHNL 738
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_scaffold_329000001 | cc-nbs-lrr resistance protein (2359 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.82 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.79 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.76 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.71 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.35 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.31 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.29 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.2 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.2 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.2 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.17 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.15 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.05 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.02 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.01 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.95 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.86 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.86 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.85 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.84 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.82 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.72 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.62 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.59 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.58 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.47 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.46 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.38 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.27 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.2 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.05 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.03 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.0 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.98 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.87 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.83 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.76 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.75 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.52 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.47 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.44 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.42 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.37 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.36 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.31 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.27 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.08 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.39 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.82 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.69 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 95.33 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.22 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.14 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.58 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 94.24 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.96 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.52 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.26 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 93.12 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 92.14 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 91.61 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 89.67 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 87.54 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 86.84 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 85.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 82.7 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 81.97 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-20 Score=188.48 Aligned_cols=234 Identities=21% Similarity=0.296 Sum_probs=143.8
Q ss_pred ccccccccccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCC
Q 020667 4 SINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQ 83 (323)
Q Consensus 4 ~~~l~~i~~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~ 83 (323)
..+++++|. ++. .+++|++|++++|..++.+ |. ++.+++|+.|++++|..+. .++. .+..+++
T Consensus 620 ~s~l~~L~~----~~~-~l~~Lk~L~Ls~~~~l~~i-p~--ls~l~~Le~L~L~~c~~L~--~lp~-------si~~L~~ 682 (1153)
T PLN03210 620 GSKLEKLWD----GVH-SLTGLRNIDLRGSKNLKEI-PD--LSMATNLETLKLSDCSSLV--ELPS-------SIQYLNK 682 (1153)
T ss_pred Ccccccccc----ccc-cCCCCCEEECCCCCCcCcC-Cc--cccCCcccEEEecCCCCcc--ccch-------hhhccCC
Confidence 345666775 356 7889999999887777764 65 6788999999999988876 3333 3337888
Q ss_pred cCEEecccccccccccccCccccCCCCccEEEEcCCchhhh---hccCCcceeeecCCCCccccCCC-------------
Q 020667 84 LQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFME---RYNRTTNILTERGCDHLVDLVPS------------- 147 (323)
Q Consensus 84 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~---~l~~L~~L~~i~~~~~l~~l~~~------------- 147 (323)
|+.|++++|..++.+|... .+++|+.|++++|..+.. ..++++.| .+.++. +..+|..
T Consensus 683 L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L-~L~~n~-i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWL-DLDETA-IEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCee-ecCCCc-cccccccccccccccccccc
Confidence 8888888888888877652 577888888887743211 01122222 111111 1112111
Q ss_pred -----------------CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccccccc
Q 020667 148 -----------------STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFR 210 (323)
Q Consensus 148 -----------------~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 210 (323)
...+++|+.|++++|+.+..+ |..++++++|+.|++++|..++.+|. . ..++
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP~--------~-~~L~ 825 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLPT--------G-INLE 825 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeCC--------C-CCcc
Confidence 001234555555555555544 34455566666666666655555541 1 1345
Q ss_pred ccCeeecccccccc--------------------eecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCc
Q 020667 211 ELKELKLLNLESLT--------------------SFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 211 ~L~~L~l~~c~~L~--------------------~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~ 270 (323)
+|+.|++++|..++ .+|. ....+++|++|++++|+.++.+|.....+++|+.+++.+|
T Consensus 826 sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccCEEECCCCCccccccccccccCEeECCCCCCccChH--HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 55555555554443 3332 2356788889999999998888887778888888888776
Q ss_pred ccc
Q 020667 271 ARW 273 (323)
Q Consensus 271 ~~~ 273 (323)
...
T Consensus 904 ~~L 906 (1153)
T PLN03210 904 GAL 906 (1153)
T ss_pred ccc
Confidence 543
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-19 Score=180.89 Aligned_cols=235 Identities=15% Similarity=0.095 Sum_probs=134.1
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC-----------CCceEEeeccc--cccCCCcccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP-----------VLKELIVMDNQ--EERKNNNVMF 81 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~-----------~l~~l~~~~~~--~~~~~~~~~l 81 (323)
|..+. .+++|++|++++ +++.+.+|..++..+++|++|+++++. .++.+.+..+. +..+..+..+
T Consensus 86 ~~~~~-~l~~L~~L~Ls~-n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIF-RLPYIQTINLSN-NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHh-CCCCCCEEECCC-CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC
Confidence 45566 889999999988 567665687766688999999988653 23333333332 3344455567
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCC
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLT 155 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~ 155 (323)
++|++|+++++.....+|... ..+++|++|++++| |..++.+.+|+.| .+.++...+.+|..+..+++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSL---TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI-YLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCCCEEECccCcccccCChhh---hhCcCCCeeeccCCCCcCcCChHHcCcCCccEE-ECcCCccCCcCChhHhcCCCCC
Confidence 777777777664444444442 36667777777666 3334444555555 4555555555666666667777
Q ss_pred EEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC
Q 020667 156 NLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF 235 (323)
Q Consensus 156 ~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l 235 (323)
+|++++|.....+ +..++++++|+.|++++|...+.++ ..+..+++|+.|++++|.-...++. ....+
T Consensus 240 ~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l 307 (968)
T PLN00113 240 HLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIP--------PSIFSLQKLISLDLSDNSLSGEIPE--LVIQL 307 (968)
T ss_pred EEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCc--------hhHhhccCcCEEECcCCeeccCCCh--hHcCC
Confidence 7777666533333 4456666677777766665433333 2334556666666665421112221 12344
Q ss_pred CcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 236 PSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 236 ~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
++|++|++++|...+.+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 55555555554444444444444555555555
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=176.36 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=18.9
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
.+++|++|++++ +.+.+.+|.. ++.+++|++|+++++
T Consensus 138 ~l~~L~~L~Ls~-n~~~~~~p~~-~~~l~~L~~L~L~~n 174 (968)
T PLN00113 138 SIPNLETLDLSN-NMLSGEIPND-IGSFSSLKVLDLGGN 174 (968)
T ss_pred ccCCCCEEECcC-CcccccCChH-HhcCCCCCEEECccC
Confidence 455555555555 3344434443 455555555555544
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-17 Score=166.35 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=55.3
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
++|+.|++++|+.+..+| ..++.+++|+.|+|.+|.+++.+|... .+++|++|++++|..++.+|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP--------~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP--------SSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccchheeCCCCCCccccC--------hhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc
Confidence 578888888888888887 456789999999999999999998754 688999999999988776654
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-14 Score=132.60 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=126.2
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC------------CCCceEEeeccc---cccCCCc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC------------PVLKELIVMDNQ---EERKNNN 78 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c------------~~l~~l~~~~~~---~~~~~~~ 78 (323)
.|..+. .++.++.|.|.. .++..+ |.. ++.+.+|++|.++++ +.++.+.+-.+. ..+|+.+
T Consensus 24 FP~~v~-qMt~~~WLkLnr-t~L~~v-PeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 24 FPHDVE-QMTQMTWLKLNR-TKLEQV-PEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred CchhHH-HhhheeEEEech-hhhhhC-hHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 455566 677777777776 666664 655 567777777765432 233322222221 3466777
Q ss_pred cccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhh-hhccCCcceeeecCCCCccccCCCCCCCC
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFM-ERYNRTTNILTERGCDHLVDLVPSSTSFQ 152 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~-~~l~~L~~L~~i~~~~~l~~l~~~~~~l~ 152 (323)
..+..|..|+++.+ .+++.|.... ...++-.|+++++ |+.+ -.++.|-.| ....+.++.+||.+..+.
T Consensus 100 F~l~dLt~lDLShN-qL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL--DLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHN-QLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFL--DLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred cccccceeeecchh-hhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhh--ccccchhhhcCHHHHHHh
Confidence 77888888888876 5777776643 5566777777766 3221 122222222 233455666777666666
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCc-ccceeeeccCcc-------------c--ccccccccccCeee
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD-RITEIVLVDDVA-------------A--KDEVITFRELKELK 216 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~-~l~~i~~~~~~~-------------~--~~~~~~~~~L~~L~ 216 (323)
.|++|.+++++... . ....+..+++|+.|.+++-. -+..+|..-.+. . +.-+-.+++|+.|+
T Consensus 174 ~LqtL~Ls~NPL~h-f-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNH-F-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhcCCChhhH-H-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 66666666664211 1 00011122223333333211 111222110000 0 01123456666666
Q ss_pred cccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 217 LLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 217 l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++ .+++.+.... ..+..|++|+++. +.++.+|..++.++.|++|++
T Consensus 252 LS~-N~iteL~~~~--~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 252 LSG-NKITELNMTE--GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred cCc-CceeeeeccH--HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHh
Confidence 666 3566554432 4566677777766 566677777777777777766
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-13 Score=126.57 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=94.6
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|..+. .+..|..|+|+. +.++.+ |.. +..-.++-+|++|++ +++ .++.. -..++..|-+|+++++
T Consensus 95 iP~diF-~l~dLt~lDLSh-NqL~Ev-P~~-LE~AKn~iVLNLS~N-~Ie--tIPn~------lfinLtDLLfLDLS~N- 160 (1255)
T KOG0444|consen 95 IPTDIF-RLKDLTILDLSH-NQLREV-PTN-LEYAKNSIVLNLSYN-NIE--TIPNS------LFINLTDLLFLDLSNN- 160 (1255)
T ss_pred CCchhc-ccccceeeecch-hhhhhc-chh-hhhhcCcEEEEcccC-ccc--cCCch------HHHhhHhHhhhccccc-
Confidence 355555 566666666665 555553 444 455556666666643 233 22211 1225667788898876
Q ss_pred ccccccccCccccCCCCccEEEEcCCchhhh---hccCCcceee--ecCCC-CccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGCPKFME---RYNRTTNILT--ERGCD-HLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~---~l~~L~~L~~--i~~~~-~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
.+..+|+... .+.+|+.|.++++|-... .+++++.|.. +++-+ .+..+|.++..+.+|..++++.+ ++..
T Consensus 161 rLe~LPPQ~R---RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~ 236 (1255)
T KOG0444|consen 161 RLEMLPPQIR---RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPI 236 (1255)
T ss_pred hhhhcCHHHH---HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCc
Confidence 7888888854 888999999999975433 3444444432 22222 24566777777777777777644 4555
Q ss_pred ecchhHHhccccccEEEEccCc
Q 020667 168 VLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
+ |..+.++++|+.|+++++.
T Consensus 237 v--Pecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 237 V--PECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred c--hHHHhhhhhhheeccCcCc
Confidence 4 5566677777777777653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.9e-15 Score=128.25 Aligned_cols=229 Identities=14% Similarity=0.167 Sum_probs=144.2
Q ss_pred cccccccccccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccC
Q 020667 3 YSINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFP 82 (323)
Q Consensus 3 ~~~~l~~i~~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~ 82 (323)
+++++.++..+ +. +++.|.+|.+++ +++... |+. ++.+..++.|+++.... . .++ ..++.++
T Consensus 53 s~N~l~~l~~d----l~-nL~~l~vl~~~~-n~l~~l-p~a-ig~l~~l~~l~vs~n~l-s--~lp-------~~i~s~~ 114 (565)
T KOG0472|consen 53 SHNDLEVLRED----LK-NLACLTVLNVHD-NKLSQL-PAA-IGELEALKSLNVSHNKL-S--ELP-------EQIGSLI 114 (565)
T ss_pred ccCchhhccHh----hh-cccceeEEEecc-chhhhC-CHH-HHHHHHHHHhhcccchH-h--hcc-------HHHhhhh
Confidence 44555555552 55 788888888888 667665 444 67788888888775432 2 112 2222445
Q ss_pred CcCEEecccccccccccccCc--------------------cccCCCCccEEEEcCC------chhhhhccCCcceeeec
Q 020667 83 QLQYLKMFNLENFTSFCTSNL--------------------GILEFPSLKELWISGC------PKFMERYNRTTNILTER 136 (323)
Q Consensus 83 ~L~~L~l~~~~~l~~~~~~~~--------------------~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~ 136 (323)
+|..|+.++. .+.+++.+.. ++..+.+|..+.+.++ |+.+. +..|+++ ..
T Consensus 115 ~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~l--d~ 190 (565)
T KOG0472|consen 115 SLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHL--DC 190 (565)
T ss_pred hhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhc--cc
Confidence 5555555443 3344443321 0113444444444443 11121 3334443 22
Q ss_pred CCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeee
Q 020667 137 GCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELK 216 (323)
Q Consensus 137 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~ 216 (323)
..+.++++|+.++.+.+|..|++.+++ +..+ | .+.++..|++|+++.+ .++-+++ .....++++..|+
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~l--P-ef~gcs~L~Elh~g~N-~i~~lpa-------e~~~~L~~l~vLD 258 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNK-IRFL--P-EFPGCSLLKELHVGEN-QIEMLPA-------EHLKHLNSLLVLD 258 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcc-cccC--C-CCCccHHHHHHHhccc-HHHhhHH-------HHhcccccceeee
Confidence 233467888888888888888888764 4444 3 3567777888887654 4666652 2224789999999
Q ss_pred cccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCc
Q 020667 217 LLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 217 l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~ 270 (323)
+.+ .+++++|.+. ..+.+|++|++++ +.+..+|..++++ .|++|.+.|.
T Consensus 259 LRd-Nklke~Pde~--clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 259 LRD-NKLKEVPDEI--CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccc-cccccCchHH--HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 999 5899999876 5688999999977 6788999988888 8899988653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.4e-12 Score=116.32 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=47.1
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+.++.+|+.|+++.+.....|. + .. ..+..+++|+.|++.| .+++.++... +..+++|+.|++.++ -+.++.
T Consensus 361 f~~lssL~~LdLr~N~ls~~IE-D-aa---~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~N-aiaSIq 432 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIE-D-AA---VAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDN-AIASIQ 432 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEe-c-ch---hhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCC-cceeec
Confidence 3445566666665543222221 1 11 1223477777777777 4777776654 456777777777664 344444
Q ss_pred CCCCCCCCcceeEc
Q 020667 254 EGNSSTPKLHEVQW 267 (323)
Q Consensus 254 ~~~~~~~~L~~L~l 267 (323)
........|++|.+
T Consensus 433 ~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 433 PNAFEPMELKELVM 446 (873)
T ss_pred ccccccchhhhhhh
Confidence 33323337777776
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-14 Score=126.10 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=108.3
Q ss_pred cCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCC
Q 020667 74 RKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSS 148 (323)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~ 148 (323)
.|..+..+.+|..|++.++ +++..+.... ++++|+.|+...+ |.-++.+.+|..| ++.. +++..+| ++
T Consensus 152 lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i---~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L-yL~~-Nki~~lP-ef 224 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGN-KLKALPENHI---AMKRLKHLDCNSNLLETLPPELGGLESLELL-YLRR-NKIRFLP-EF 224 (565)
T ss_pred CchHHHHHHHHHHhhcccc-chhhCCHHHH---HHHHHHhcccchhhhhcCChhhcchhhhHHH-Hhhh-cccccCC-CC
Confidence 3444446777777777775 5677776644 5888999887554 4444444455444 2222 3455565 67
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.++..|++++++.+. ++.++ ...+.+++++..|++.++. ++++| ++++.+.+|++|++++ ..+..+|.
T Consensus 225 ~gcs~L~Elh~g~N~-i~~lp-ae~~~~L~~l~vLDLRdNk-lke~P--------de~clLrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-IEMLP-AEHLKHLNSLLVLDLRDNK-LKEVP--------DEICLLRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred CccHHHHHHHhcccH-HHhhH-HHHhcccccceeeeccccc-cccCc--------hHHHHhhhhhhhcccC-CccccCCc
Confidence 888899999998764 55442 3456689999999999864 88888 6778899999999999 57888887
Q ss_pred CCccccCCcccEEeecCCC
Q 020667 229 GNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~ 247 (323)
+- +++ .|+.|.+.++|
T Consensus 293 sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 293 SL--GNL-HLKFLALEGNP 308 (565)
T ss_pred cc--ccc-eeeehhhcCCc
Confidence 54 667 78888888865
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-12 Score=114.48 Aligned_cols=231 Identities=14% Similarity=0.186 Sum_probs=128.9
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
++.++. +++||+++++.+ +.++.+ |.. .+...+|+.|++.++. +.. +. ...+..++.|+.|+++.+
T Consensus 94 d~~~f~-nl~nLq~v~l~~-N~Lt~I-P~f-~~~sghl~~L~L~~N~-I~s--v~------se~L~~l~alrslDLSrN- 159 (873)
T KOG4194|consen 94 DFEFFY-NLPNLQEVNLNK-NELTRI-PRF-GHESGHLEKLDLRHNL-ISS--VT------SEELSALPALRSLDLSRN- 159 (873)
T ss_pred cHHHHh-cCCcceeeeecc-chhhhc-ccc-cccccceeEEeeeccc-ccc--cc------HHHHHhHhhhhhhhhhhc-
Confidence 355566 888888888887 777764 763 3345568888887653 221 11 112336788888888865
Q ss_pred ccccccccCccccCCCCccEEEEcCCch------hhhhccCCcceeeecCCCCccccCCCCC-CCCCCCEEEeecCcCcc
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGCPK------FMERYNRTTNILTERGCDHLVDLVPSST-SFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~cp~------~~~~l~~L~~L~~i~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~ 166 (323)
.+..++.... ..-.++++|+++++.- .++.+.+|..| -..-+.++.+|+... ++++|+.|++.++. ++
T Consensus 160 ~is~i~~~sf--p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl--kLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir 234 (873)
T KOG4194|consen 160 LISEIPKPSF--PAKVNIKKLNLASNRITTLETGHFDSLNSLLTL--KLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR 234 (873)
T ss_pred hhhcccCCCC--CCCCCceEEeeccccccccccccccccchheee--ecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence 5566655422 1225788888887731 12223333333 122345566665443 37778888777653 32
Q ss_pred eecchhHHhccccccEEEEccCc-------------ccceeeeccCcc---cccccccccccCeeecccccccceecCCC
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCD-------------RITEIVLVDDVA---AKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~-------------~l~~i~~~~~~~---~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
..- ...+.+|++|+.|.+..+. +++.+-...+.. ....+..+++|+.|+++. ..+.++....
T Consensus 235 ive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~ 312 (873)
T KOG4194|consen 235 IVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDS 312 (873)
T ss_pred eeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheeecch
Confidence 221 1235667777766654432 222221111100 112234566777777776 4666665555
Q ss_pred ccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEc
Q 020667 231 CAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQW 267 (323)
Q Consensus 231 ~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l 267 (323)
| ...++|++|++++ +.+++++++. ..+..|++|.+
T Consensus 313 W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 313 W-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred h-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcc
Confidence 4 3456777777766 5666666653 34567777777
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=113.19 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=60.4
Q ss_pred cccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCC
Q 020667 179 RLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSS 258 (323)
Q Consensus 179 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 258 (323)
+|+.|++++|. +..+| ...++|+.|+++++ .++.+|.. ..+|+.|++++ +.++.+|..+..
T Consensus 383 ~L~~LdLs~N~-Lt~LP-----------~l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 383 GLKELIVSGNR-LTSLP-----------VLPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred ccceEEecCCc-ccCCC-----------CcccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc-CcccccChHHhh
Confidence 56666666653 44444 13467888888885 57766531 34788899977 567889998888
Q ss_pred CCCcceeEccCccccccccchhhhcee
Q 020667 259 TPKLHEVQWPGEARWAWKDDLNTTIQK 285 (323)
Q Consensus 259 ~~~L~~L~l~~~~~~~~~~~l~~~l~~ 285 (323)
+++|+.|++ ..|.+.+..+..+..
T Consensus 444 L~~L~~LdL---s~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 444 LSSETTVNL---EGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCeEEC---CCCCCCchHHHHHHH
Confidence 999999999 777787777666643
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.3e-13 Score=116.86 Aligned_cols=239 Identities=20% Similarity=0.243 Sum_probs=123.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
++||+++|.+.+|.++++..-.++...++.|++|++..|.+++...+..... .+++|++|+++.|+.+.+-..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~-------gC~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE-------GCRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH-------hhhhHHHhhhccCchhhcCcc
Confidence 5666777777666666654333334456677777776666665433322211 466777777777765554111
Q ss_pred cCccccCCCCccEEEEcCCchhh----hh----ccCCcceeeecCCCCccccC--CCCCCC-------------------
Q 020667 101 SNLGILEFPSLKELWISGCPKFM----ER----YNRTTNILTERGCDHLVDLV--PSSTSF------------------- 151 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~----~~----l~~L~~L~~i~~~~~l~~l~--~~~~~l------------------- 151 (323)
... ..++..++.+...+|...- .. ...+..+ ++..|..+++.. ..-.+.
T Consensus 235 ~~~-~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l-nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 235 QAL-QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL-NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred hHH-hccchhhhhhhhcccccccHHHHHHHhccChHhhcc-chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 110 1244556666555662110 00 0011111 122333332211 001123
Q ss_pred -------CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc
Q 020667 152 -------QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT 224 (323)
Q Consensus 152 -------~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 224 (323)
++|+.+.+..|+.+++........+.+.|+.+++.+|..+.+-. .... -.+++.|+.|.++.|..++
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-----L~sl-s~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-----LASL-SRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-----Hhhh-ccCCchhccCChhhhhhhh
Confidence 44444444444444443222223344444554444444332210 0000 1468899999999998887
Q ss_pred eecCCC---ccccCCcccEEeecCCCCCc-ccCCCCCCCCCcceeEccCccccc
Q 020667 225 SFCSGN---CAFKFPSLERLVLDDCPSMK-IFSEGNSSTPKLHEVQWPGEARWA 274 (323)
Q Consensus 225 ~l~~~~---~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~~L~~L~l~~~~~~~ 274 (323)
+-.... ....+..|+.+.+.+||.+. ..-+.+..|++|+++++.++....
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 752211 11346679999999999986 344456689999999998876543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-10 Score=108.21 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=48.9
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+...|++++ .+++.+ |.. + .++|+.|+++++ .++ .++.. .+++|+.|+++++ .++.+|..
T Consensus 179 ~~~~L~L~~-~~LtsL-P~~-I--p~~L~~L~Ls~N-~Lt--sLP~~---------l~~nL~~L~Ls~N-~LtsLP~~-- 238 (754)
T PRK15370 179 NKTELRLKI-LGLTTI-PAC-I--PEQITTLILDNN-ELK--SLPEN---------LQGNIKTLYANSN-QLTSIPAT-- 238 (754)
T ss_pred CceEEEeCC-CCcCcC-Ccc-c--ccCCcEEEecCC-CCC--cCChh---------hccCCCEEECCCC-ccccCChh--
Confidence 445566655 345543 433 1 235666666554 333 11211 2235666666554 34444432
Q ss_pred cccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecC
Q 020667 104 GILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCC 162 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c 162 (323)
..++|+.|++++|. ..+ ..+|+.| ++ +++.+..+|..+. ++|+.|++++|
T Consensus 239 ---l~~~L~~L~Ls~N~L~~LP~~l--~s~L~~L-~L-s~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 239 ---LPDTIQEMELSINRITELPERL--PSALQSL-DL-FHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred ---hhccccEEECcCCccCcCChhH--hCCCCEE-EC-cCCccCccccccC--CCCcEEECCCC
Confidence 12355555555551 111 1233444 22 2334444544332 35666666655
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-12 Score=112.47 Aligned_cols=232 Identities=19% Similarity=0.265 Sum_probs=158.4
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
..|+.|.+++|....+-.-..+..+++++++|.+.+|..+++-..-.-.. .+++|++|++..|+.+++.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-------~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-------YCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-------hcchhhhhhhcccchhHHHHHHH
Confidence 46899999999887654333345689999999999999776321111111 68999999999999888765443
Q ss_pred ccccCCCCccEEEEcCCchhhhh--------ccCCcceeeecCCCCcc--ccCCCCCCCCCCCEEEeecCcCcceecchh
Q 020667 103 LGILEFPSLKELWISGCPKFMER--------YNRTTNILTERGCDHLV--DLVPSSTSFQNLTNLVVSCCKGLKIVLTFS 172 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~--------l~~L~~L~~i~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 172 (323)
. ...|++|+++++++||...++ +..+..+ ...+|..++ .+...-.+..-+..+++..|..+++.....
T Consensus 211 l-a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~-~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 211 L-AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKL-SLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred H-HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhh-hhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2 457999999999999876552 1111111 123443321 111112244456777778898888874444
Q ss_pred HHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCc--
Q 020667 173 IAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK-- 250 (323)
Q Consensus 173 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~-- 250 (323)
....+..|+.|..++|..+++.+.. .-....++|+.|.+.+|.++++........+++.|+.+++.+|-...
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLW------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHH------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 5567889999999999987775522 11246789999999999998887665555678899999999887654
Q ss_pred ccCCCCCCCCCcceeEccC
Q 020667 251 IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 251 ~lp~~~~~~~~L~~L~l~~ 269 (323)
.+-.-..+|+.|+.+.++.
T Consensus 363 tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred hHhhhccCCchhccCChhh
Confidence 2333334788999888843
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-10 Score=110.92 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=92.2
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCchh--hhh-ccCCcceeeecCCCCccccCCCCCCCCCCCEEE
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKF--MER-YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLV 158 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~--~~~-l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~ 158 (323)
.+|+.|+++++ ++..+|.. -+++|+.|++++|.-- -.. .+.+++| .+.+ +.+..+|..+ .++|+.|+
T Consensus 262 s~L~~L~Ls~N-~L~~LP~~-----l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L-~Ls~-N~Lt~LP~~l--~~sL~~L~ 331 (754)
T PRK15370 262 SALQSLDLFHN-KISCLPEN-----LPEELRYLSVYDNSIRTLPAHLPSGITHL-NVQS-NSLTALPETL--PPGLKTLE 331 (754)
T ss_pred CCCCEEECcCC-ccCccccc-----cCCCCcEEECCCCccccCcccchhhHHHH-HhcC-CccccCCccc--cccceecc
Confidence 35777777654 55555543 2357777877776100 000 0123333 2333 2344555433 36788888
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL 238 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 238 (323)
+++|. ++.+ +..+ .++|+.|++++|. +..+| .. ..++|+.|++.+| +++.+|... ..+|
T Consensus 332 Ls~N~-Lt~L--P~~l--~~sL~~L~Ls~N~-L~~LP--------~~--lp~~L~~LdLs~N-~Lt~LP~~l----~~sL 390 (754)
T PRK15370 332 AGENA-LTSL--PASL--PPELQVLDVSKNQ-ITVLP--------ET--LPPTITTLDVSRN-ALTNLPENL----PAAL 390 (754)
T ss_pred ccCCc-cccC--Chhh--cCcccEEECCCCC-CCcCC--------hh--hcCCcCEEECCCC-cCCCCCHhH----HHHH
Confidence 88874 5555 3322 2688888888875 55555 11 2468899999886 677776543 3478
Q ss_pred cEEeecCCCCCcccCCCCC----CCCCcceeEc
Q 020667 239 ERLVLDDCPSMKIFSEGNS----STPKLHEVQW 267 (323)
Q Consensus 239 ~~L~l~~c~~l~~lp~~~~----~~~~L~~L~l 267 (323)
+.|++++| .+..+|..+. ..+++..+++
T Consensus 391 ~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 391 QIMQASRN-NLVRLPESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred HHHhhccC-CcccCchhHHHHhhcCCCccEEEe
Confidence 88888874 5667776543 3477888888
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-11 Score=113.28 Aligned_cols=215 Identities=19% Similarity=0.213 Sum_probs=131.7
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
.+|++++++. +++.++ | ++++.+.+|+.++.....- . .++ ..+....+|+.|.+..| .+.-++...
T Consensus 241 ~nl~~~dis~-n~l~~l-p-~wi~~~~nle~l~~n~N~l-~--~lp-------~ri~~~~~L~~l~~~~n-el~yip~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNL-P-EWIGACANLEALNANHNRL-V--ALP-------LRISRITSLVSLSAAYN-ELEYIPPFL 306 (1081)
T ss_pred ccceeeecch-hhhhcc-h-HHHHhcccceEecccchhH-H--hhH-------HHHhhhhhHHHHHhhhh-hhhhCCCcc
Confidence 5777777776 667764 6 4477888888887765432 2 111 22224556666666655 455555543
Q ss_pred ccccCCCCccEEEEcCC-----chhh-hh-------------------------ccCCcceeeecCCCCccccCCCCCCC
Q 020667 103 LGILEFPSLKELWISGC-----PKFM-ER-------------------------YNRTTNILTERGCDHLVDLVPSSTSF 151 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c-----p~~~-~~-------------------------l~~L~~L~~i~~~~~l~~l~~~~~~l 151 (323)
. .+.+|+.|++..+ |..+ .. ++.|+.| .+.++..-.+..+-+.++
T Consensus 307 e---~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L-ylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 307 E---GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL-YLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred c---ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH-HHhcCcccccchhhhccc
Confidence 2 5667777776655 2110 00 0111111 122232223333457788
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
.+|+.|+++++. ++.++ .+.+.+++.|++|+++++. ++.++ ..+..++.|++|...+ ..+..+|.
T Consensus 383 ~hLKVLhLsyNr-L~~fp-as~~~kle~LeeL~LSGNk-L~~Lp--------~tva~~~~L~tL~ahs-N~l~~fPe--- 447 (1081)
T KOG0618|consen 383 KHLKVLHLSYNR-LNSFP-ASKLRKLEELEELNLSGNK-LTTLP--------DTVANLGRLHTLRAHS-NQLLSFPE--- 447 (1081)
T ss_pred cceeeeeecccc-cccCC-HHHHhchHHhHHHhcccch-hhhhh--------HHHHhhhhhHHHhhcC-Cceeechh---
Confidence 889999998874 55542 4567788889999998865 77777 4446788888888776 46777773
Q ss_pred cccCCcccEEeecCCCCCc--ccCCCCCCCCCcceeEccCccc
Q 020667 232 AFKFPSLERLVLDDCPSMK--IFSEGNSSTPKLHEVQWPGEAR 272 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~~~~ 272 (323)
...++.|+.+++ .|+.+. .+|... .-++||+|++.|...
T Consensus 448 ~~~l~qL~~lDl-S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDL-SCNNLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEec-ccchhhhhhhhhhC-CCcccceeeccCCcc
Confidence 257889999999 557776 345433 227999999966443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-09 Score=104.56 Aligned_cols=219 Identities=19% Similarity=0.255 Sum_probs=128.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. .++.|+.|++++|..+.. +|.+ ++.+-+||+|++++.. ++ . .|..+.+|..|.+|++.....+..
T Consensus 567 f~-~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t~-I~--~-------LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 567 FR-SLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDTG-IS--H-------LPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred Hh-hCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCCC-cc--c-------cchHHHHHHhhheecccccccccc
Confidence 44 688888888888777766 4766 7888888888888653 33 2 233444788888888887766666
Q ss_pred ccccCccccCCCCccEEEEcCCc-----hhhhhccCCcceee--------------------------ec-CCCCccccC
Q 020667 98 FCTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILT--------------------------ER-GCDHLVDLV 145 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~--------------------------i~-~~~~l~~l~ 145 (323)
++... ..+++|++|.+..-- ..++.+..|++|.. +. .+......+
T Consensus 634 ~~~i~---~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~ 710 (889)
T KOG4658|consen 634 IPGIL---LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI 710 (889)
T ss_pred ccchh---hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee
Confidence 64432 257888888776541 11222223333321 01 112233444
Q ss_pred CCCCCCCCCCEEEeecCcCcceec---------------------------chhHHhccccccEEEEccCcccceeeecc
Q 020667 146 PSSTSFQNLTNLVVSCCKGLKIVL---------------------------TFSIAKTLVRLEYMEIESCDRITEIVLVD 198 (323)
Q Consensus 146 ~~~~~l~~L~~L~l~~c~~l~~l~---------------------------~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 198 (323)
.++..+.+|+.|.|.+|....... .+.+....++|+.|++..|..++++....
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH
Confidence 566778888888888887542110 00112234677788888887777766433
Q ss_pred Cccccc--ccccccccCee-ecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 199 DVAAKD--EVITFRELKEL-KLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 199 ~~~~~~--~~~~~~~L~~L-~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
+..... ....+.+++.+ .+.+.+.+..+.... ..++.|+.+.+..||+++.+|.
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCcc
Confidence 222211 12445555555 355555555544322 2345577888888888777765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-10 Score=101.40 Aligned_cols=234 Identities=15% Similarity=0.033 Sum_probs=125.9
Q ss_pred cCCcccEEeeeccccccee----ccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYL----FSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~----~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+++|++|++++|. ++.. ++.. +...++|++|+++++..-. ........+..+..+++|++|+++++....
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNETGR---IPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccccCC---cchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 67779999999854 4221 1222 4567789999988764221 011111122233367899999999886433
Q ss_pred cccccCcc-ccCCCCccEEEEcCCchh----------hhhc-cCCcceeeecCCCCcc----ccCCCCCCCCCCCEEEee
Q 020667 97 SFCTSNLG-ILEFPSLKELWISGCPKF----------MERY-NRTTNILTERGCDHLV----DLVPSSTSFQNLTNLVVS 160 (323)
Q Consensus 97 ~~~~~~~~-~~~l~~L~~L~l~~cp~~----------~~~l-~~L~~L~~i~~~~~l~----~l~~~~~~l~~L~~L~l~ 160 (323)
..+..... ... ++|++|++++|.-. +..+ ++++.| ++.+|.... .++..+..+++|++|+++
T Consensus 96 ~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 96 DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL-VLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE-EcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 22222110 112 55999999988321 1223 455555 455555331 222234455678888888
Q ss_pred cCcCcceecc---hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccc----
Q 020667 161 CCKGLKIVLT---FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAF---- 233 (323)
Q Consensus 161 ~c~~l~~l~~---~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~---- 233 (323)
+|. ++.-.. ...+..+++|++|++++|. +...... .....+..+++|++|++++| .+++........
T Consensus 174 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~---~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 174 NNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS---ALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLS 247 (319)
T ss_pred CCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH---HHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhc
Confidence 775 332111 1223445688888888875 2211100 00012245678888888886 344321111001
Q ss_pred cCCcccEEeecCCCCC----cccCCCCCCCCCcceeEc
Q 020667 234 KFPSLERLVLDDCPSM----KIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 234 ~l~~L~~L~l~~c~~l----~~lp~~~~~~~~L~~L~l 267 (323)
..+.|++|++.+|... ..+...+..+++|+++++
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 2368888888887532 123333334578888888
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-10 Score=90.63 Aligned_cols=165 Identities=16% Similarity=0.222 Sum_probs=114.2
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
++. .+.+.+.|.++. ++++.+.|. +..+.+|+.|++++. .++ +.|.++..+++|+.|++. +..+.
T Consensus 28 gLf-~~s~ITrLtLSH-NKl~~vppn--ia~l~nlevln~~nn-qie---------~lp~~issl~klr~lnvg-mnrl~ 92 (264)
T KOG0617|consen 28 GLF-NMSNITRLTLSH-NKLTVVPPN--IAELKNLEVLNLSNN-QIE---------ELPTSISSLPKLRILNVG-MNRLN 92 (264)
T ss_pred ccc-chhhhhhhhccc-CceeecCCc--HHHhhhhhhhhcccc-hhh---------hcChhhhhchhhhheecc-hhhhh
Confidence 355 688889999998 889887554 789999999999865 344 345566689999999987 56777
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
..|.+ ++.+|-|+.|++.++. | .-..+|..+..++.|+-|+++++. .+.+ |...++
T Consensus 93 ~lprg---fgs~p~levldltynn-----------l-------~e~~lpgnff~m~tlralyl~dnd-fe~l--p~dvg~ 148 (264)
T KOG0617|consen 93 ILPRG---FGSFPALEVLDLTYNN-----------L-------NENSLPGNFFYMTTLRALYLGDND-FEIL--PPDVGK 148 (264)
T ss_pred cCccc---cCCCchhhhhhccccc-----------c-------ccccCCcchhHHHHHHHHHhcCCC-cccC--Chhhhh
Confidence 78877 4599999999998751 1 112344445556666667776653 4444 445677
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
+++|+.|.+.++. +-++| .+++.+..|++|+|.+ ..++.+|.+.
T Consensus 149 lt~lqil~lrdnd-ll~lp--------keig~lt~lrelhiqg-nrl~vlppel 192 (264)
T KOG0617|consen 149 LTNLQILSLRDND-LLSLP--------KEIGDLTRLRELHIQG-NRLTVLPPEL 192 (264)
T ss_pred hcceeEEeeccCc-hhhCc--------HHHHHHHHHHHHhccc-ceeeecChhh
Confidence 7777777777654 34455 4456777777777777 4677776543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=98.23 Aligned_cols=87 Identities=21% Similarity=0.107 Sum_probs=47.6
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+|+.|++++|. ++.++ . ..++|+.|+++++ .+..+| ...++|+.|+++++ .++.+|..
T Consensus 343 ~Lq~LdLS~N~-Ls~LP--~---lp~~L~~L~Ls~N-~L~~LP-----------~l~~~L~~LdLs~N-~Lt~LP~l--- 400 (788)
T PRK15387 343 GLQELSVSDNQ-LASLP--T---LPSELYKLWAYNN-RLTSLP-----------ALPSGLKELIVSGN-RLTSLPVL--- 400 (788)
T ss_pred ccceEecCCCc-cCCCC--C---CCcccceehhhcc-ccccCc-----------ccccccceEEecCC-cccCCCCc---
Confidence 56666665542 44332 1 1234555555543 244444 12346777777764 56655531
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
.++|+.|+++++ .+..+|. .+.+|+.|++
T Consensus 401 --~s~L~~LdLS~N-~LssIP~---l~~~L~~L~L 429 (788)
T PRK15387 401 --PSELKELMVSGN-RLTSLPM---LPSGLLSLSV 429 (788)
T ss_pred --ccCCCEEEccCC-cCCCCCc---chhhhhhhhh
Confidence 356777888774 4666775 2346777777
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.5e-11 Score=92.04 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=63.1
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+..+|..++.|+-|+.|+++.++.-+. ..|..+..++.|+.|+++++. .+-+| .+++.+.+|+.|.+.+
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~-~lpgnff~m~tlralyl~dnd-fe~lp--------~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDND-FEILP--------PDVGKLTNLQILSLRD 159 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccc-cCCcchhHHHHHHHHHhcCCC-cccCC--------hhhhhhcceeEEeecc
Confidence 3445566677777777777776542222 224444555667777776654 44455 4446777777777776
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
..+-++|.+. +.++.|++|+|.+ +.++.+|..+.
T Consensus 160 -ndll~lpkei--g~lt~lrelhiqg-nrl~vlppel~ 193 (264)
T KOG0617|consen 160 -NDLLSLPKEI--GDLTRLRELHIQG-NRLTVLPPELA 193 (264)
T ss_pred -CchhhCcHHH--HHHHHHHHHhccc-ceeeecChhhh
Confidence 3566666554 5677777777755 56666766543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-09 Score=97.50 Aligned_cols=208 Identities=16% Similarity=0.184 Sum_probs=118.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
++..|+...|.+| .+......+....|++++.||+|..- +..|. ....-...||+|+.|+++.+ ++.....
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~------~v~~i~eqLp~Le~LNls~N-rl~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNWF------PVLKIAEQLPSLENLNLSSN-RLSNFIS 189 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhHH------HHHHHHHhcccchhcccccc-cccCCcc
Confidence 6888999999885 45543222346789999999998641 11111 01111127899999999876 4544444
Q ss_pred cCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhH
Q 020667 101 SNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
+.. ...+++|+.|.++.|- ..+..+++++.| .+.++..+.....+...+..|+.|+|++++.+.. .....
T Consensus 190 s~~-~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L-~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~~~ 266 (505)
T KOG3207|consen 190 SNT-TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL-YLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQGYK 266 (505)
T ss_pred ccc-hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh-hhhcccccceecchhhhhhHHhhccccCCccccc-ccccc
Confidence 433 3467889999999992 122235666655 3444432221112233456788888887764433 22234
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEee
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVL 243 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l 243 (323)
.+.||.|..|.++.|. +.++...+.+ ..+....+++|++|.+... ++.+++.-.+...+++|+.|.+
T Consensus 267 ~~~l~~L~~Lnls~tg-i~si~~~d~~-s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTG-IASIAEPDVE-SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccccchhhhhccccC-cchhcCCCcc-chhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 5677788888777664 3333211111 1122256788888887773 4444443334445666666665
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-09 Score=95.91 Aligned_cols=231 Identities=15% Similarity=0.037 Sum_probs=129.8
Q ss_pred ccccCCcccEEeeecccccce------eccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRY------LFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFN 91 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~------~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (323)
+. ..++|++|+++++ .+.+ .++. .+..+++|+.|++++|..-. .....+..... . ++|++|++++
T Consensus 47 l~-~~~~l~~l~l~~~-~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~---~-~~L~~L~ls~ 117 (319)
T cd00116 47 LR-PQPSLKELCLSLN-ETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNALGP--DGCGVLESLLR---S-SSLQELKLNN 117 (319)
T ss_pred Hh-hCCCceEEecccc-ccCCcchHHHHHHH-HHHhcCceeEEEccCCCCCh--hHHHHHHHHhc---c-CcccEEEeeC
Confidence 44 6778999999874 3332 1112 25568899999999886543 11111111111 2 4599999988
Q ss_pred cccccc-----ccccCccccCC-CCccEEEEcCCch-------h---hhhccCCcceeeecCCCCcc----ccCCCCCCC
Q 020667 92 LENFTS-----FCTSNLGILEF-PSLKELWISGCPK-------F---MERYNRTTNILTERGCDHLV----DLVPSSTSF 151 (323)
Q Consensus 92 ~~~l~~-----~~~~~~~~~~l-~~L~~L~l~~cp~-------~---~~~l~~L~~L~~i~~~~~l~----~l~~~~~~l 151 (323)
|. +.. +... ...+ ++|++|++++|.- . +..+.+++.| ++.+|...+ .++..+..+
T Consensus 118 ~~-~~~~~~~~l~~~---l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 118 NG-LGDRGLRLLAKG---LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL-NLANNGIGDAGIRALAEGLKAN 192 (319)
T ss_pred Cc-cchHHHHHHHHH---HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE-ECcCCCCchHHHHHHHHHHHhC
Confidence 74 331 1111 1245 8899999999831 1 1223456666 455554331 233334456
Q ss_pred CCCCEEEeecCcCcceec---chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 152 QNLTNLVVSCCKGLKIVL---TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
++|++|++++|. +++.. ....+..+++|++|++++|. +.+..... .........+.|+.|++.+| .++....
T Consensus 193 ~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~--l~~~~~~~~~~L~~L~l~~n-~i~~~~~ 267 (319)
T cd00116 193 CNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA--LASALLSPNISLLTLSLSCN-DITDDGA 267 (319)
T ss_pred CCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH--HHHHHhccCCCceEEEccCC-CCCcHHH
Confidence 799999999985 33221 12345668899999999986 33211000 00000012479999999997 4542111
Q ss_pred ---CCccccCCcccEEeecCCCCCcc----cCCCCCCC-CCcceeEc
Q 020667 229 ---GNCAFKFPSLERLVLDDCPSMKI----FSEGNSST-PKLHEVQW 267 (323)
Q Consensus 229 ---~~~~~~l~~L~~L~l~~c~~l~~----lp~~~~~~-~~L~~L~l 267 (323)
......+++|++++++++..-.. +...+... +.|+++++
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 01123468999999988664422 33222222 57777777
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-09 Score=100.01 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
.|+.|++.++. +++-. ...+.++..|+.|+++++. +..+|+ ..+..++.|++|+++| .+|+.++...
T Consensus 360 ~Lq~LylanN~-Ltd~c-~p~l~~~~hLKVLhLsyNr-L~~fpa-------s~~~kle~LeeL~LSG-NkL~~Lp~tv-- 426 (1081)
T KOG0618|consen 360 ALQELYLANNH-LTDSC-FPVLVNFKHLKVLHLSYNR-LNSFPA-------SKLRKLEELEELNLSG-NKLTTLPDTV-- 426 (1081)
T ss_pred HHHHHHHhcCc-ccccc-hhhhccccceeeeeecccc-cccCCH-------HHHhchHHhHHHhccc-chhhhhhHHH--
Confidence 35555555553 33322 2235667778888887753 666662 2345677788888888 5788887543
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC--ccccccccchh-hhceeeeccce
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG--EARWAWKDDLN-TTIQKVIFPAM 291 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~--~~~~~~~~~l~-~~l~~l~~~~~ 291 (323)
..++.|++|...+ +.+..+| .+..++.|+.++++- -.+....-..| +.++++.+.|-
T Consensus 427 a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 6788888888855 6778889 566899999999921 12223344556 67777777663
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-08 Score=97.95 Aligned_cols=213 Identities=17% Similarity=0.154 Sum_probs=122.4
Q ss_pred cCCcccEEeeeccc-ccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccc
Q 020667 21 GIQNLMHLTLRSCM-NLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~-~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 99 (323)
..++|++|-+.+.. .+.. ++..++..++.|++||+++|..+. .+| ..++.+-+|++|++++. .+..+|
T Consensus 543 ~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~--~LP-------~~I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLS--KLP-------SSIGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred CCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccC--cCC-------hHHhhhhhhhcccccCC-Cccccc
Confidence 46688888887732 1444 355557889999999999987776 334 44448999999999876 677888
Q ss_pred ccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCc-cccCCCCCCCCCCCEEEeecCcC--------
Q 020667 100 TSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHL-VDLVPSSTSFQNLTNLVVSCCKG-------- 164 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~-------- 164 (323)
.+.. ++..|.+|++... |.....+.+|++|.--...... ......+.++.+|+.+.+..+..
T Consensus 612 ~~l~---~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~ 688 (889)
T KOG4658|consen 612 SGLG---NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLG 688 (889)
T ss_pred hHHH---HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhh
Confidence 8754 8889999998865 3344447777777321111111 11112234455555554443322
Q ss_pred ---------------cceecchhHHhccccccEEEEccCcccceeeeccCcccccccc-cccccCeeecccccccceecC
Q 020667 165 ---------------LKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVI-TFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 165 ---------------l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.......+.+..+.+|+.|.|.+|...+......+ ..... .|+++..+.+.+|..++.+..
T Consensus 689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~---~~~~~~~f~~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE---SLIVLLCFPNLSKVSILNCHMLRDLTW 765 (889)
T ss_pred hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccccc---ccchhhhHHHHHHHHhhccccccccch
Confidence 00001123355667788888887775432220000 00011 255566666666655554432
Q ss_pred CCccccCCcccEEeecCCCCCcccC
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
..-.|+|+.|.+..|+.+..+.
T Consensus 766 ---~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 766 ---LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ---hhccCcccEEEEecccccccCC
Confidence 1235677777777777666443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-08 Score=90.28 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=134.6
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+.-+.++|.. ++++.+ |+..|+.+++|+.||||++ +++.+ -++.+ ..+++|..|.+.+..+++.++...
T Consensus 67 ~~tveirLdq-N~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I-~p~AF-------~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 67 PETVEIRLDQ-NQISSI-PPGAFKTLHRLRRLDLSKN-NISFI-APDAF-------KGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcceEEEecc-CCcccC-Chhhccchhhhceeccccc-chhhc-ChHhh-------hhhHhhhHHHhhcCCchhhhhhhH
Confidence 3456788887 888875 7677899999999999975 34422 12222 257788888888877888887765
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcce---------------------e--e------ecCCCCc------
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNI---------------------L--T------ERGCDHL------ 141 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L---------------------~--~------i~~~~~l------ 141 (323)
. .++.+|+.|.+.-| +..+..++++.-| + + +..|+.-
T Consensus 136 F--~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 136 F--GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred h--hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 3 45555555554432 1222222222111 0 0 1111110
Q ss_pred cccCCCCCCC----------------------CCCCEE---EeecCcCcceecchhHHhccccccEEEEccCcccceeee
Q 020667 142 VDLVPSSTSF----------------------QNLTNL---VVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVL 196 (323)
Q Consensus 142 ~~l~~~~~~l----------------------~~L~~L---~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~ 196 (323)
...|...+.+ .+++.+ --+.|. .....+...++.|++|+.|+++++. ++.|.
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~- 290 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNK-ITRIE- 290 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCc-cchhh-
Confidence 0000000000 001111 011121 1111222346678888888887654 55443
Q ss_pred ccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcc-cCCCCCCCCCcceeEccCccc---
Q 020667 197 VDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKI-FSEGNSSTPKLHEVQWPGEAR--- 272 (323)
Q Consensus 197 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~L~~L~l~~~~~--- 272 (323)
...+....++++|.+.. .++..+.... +..+..|+.|+++++ .++. -|.......+|.+|.+-+...
T Consensus 291 ------~~aFe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 291 ------DGAFEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ------hhhhcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecCC-eeEEEecccccccceeeeeehccCcccCc
Confidence 12233556777777776 4666665443 456778888888874 4553 455555667788887732110
Q ss_pred --ccc----------cc----chhhhceeeeccceeeeeeecCCCccc
Q 020667 273 --WAW----------KD----DLNTTIQKVIFPAMVAGVWSDDGGLEE 304 (323)
Q Consensus 273 --~~~----------~~----~l~~~l~~l~~~~~~~~~~~~~~~~e~ 304 (323)
..| .| .-|..++.+.+++.+++-...+ +-||
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~ee 408 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG-GPEE 408 (498)
T ss_pred cchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC-Cccc
Confidence 011 01 2244566777777777665333 4444
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.8e-09 Score=88.89 Aligned_cols=189 Identities=19% Similarity=0.142 Sum_probs=110.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+.|++|+|++ ..++.---..++..|++|+.|.+.+..--. . +...+.+-.+|+.|+++.|..++......
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~---I~~~iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDD------P---IVNTIAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCc------H---HHHHHhccccceeeccccccccchhHHHH
Confidence 3589999998 566543233456788999998887653221 1 11122255789999999998887765444
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCc-ceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGL-KIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~l~~l~~L~ 181 (323)
. ...|+.|.+|++++|--.... .+.+...+ -.+|+.|++++|..- ..-........+|+|.
T Consensus 255 l-~~scs~L~~LNlsWc~l~~~~---------------Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 255 L-LSSCSRLDELNLSWCFLFTEK---------------VTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred H-HHhhhhHhhcCchHhhccchh---------------hhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 3 457899999999999321111 00000001 135666777666422 1111122345677777
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+|++++|..+..-. ...+..|+.|++|.++.|..+..--. ......|+|.+|++.+|-
T Consensus 317 ~LDLSD~v~l~~~~-------~~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDC-------FQEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchH-------HHHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 77777776665421 12335677777777777765421100 022456788888887764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-09 Score=90.55 Aligned_cols=186 Identities=22% Similarity=0.208 Sum_probs=116.5
Q ss_pred CCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccC
Q 020667 49 VRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNR 128 (323)
Q Consensus 49 ~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~ 128 (323)
+.||+||+|.- .++ ...-.+ -+..|.+|+.|.+.+..--..+... ++.-.+|+.|+++.|..+..+ .
T Consensus 185 sRlq~lDLS~s-~it---~stl~~----iLs~C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n--~ 251 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VIT---VSTLHG----ILSQCSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTEN--A 251 (419)
T ss_pred hhhHHhhcchh-hee---HHHHHH----HHHHHHhhhhccccccccCcHHHHH---Hhccccceeeccccccccchh--H
Confidence 45999999853 222 111111 1226778888888876422223322 346678999999998655442 0
Q ss_pred CcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccccc
Q 020667 129 TTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVIT 208 (323)
Q Consensus 129 L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~ 208 (323)
++- -+.+++.|..|+++.|...++.......+--++|..|++++|..--.... ...-...
T Consensus 252 ~~l---------------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----~~tL~~r 311 (419)
T KOG2120|consen 252 LQL---------------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-----LSTLVRR 311 (419)
T ss_pred HHH---------------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----HHHHHHh
Confidence 111 13467788899999997666542222233356899999999864322110 0011246
Q ss_pred ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC---CCCCCCcceeEccCc
Q 020667 209 FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG---NSSTPKLHEVQWPGE 270 (323)
Q Consensus 209 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~---~~~~~~L~~L~l~~~ 270 (323)
+|.|.+|++++|..++.= ....+..|+.|++|.++.|-.+ .|.. +...|+|.+|++.|+
T Consensus 312 cp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 899999999999887762 2223467899999999999877 3332 346689999999775
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=79.37 Aligned_cols=150 Identities=21% Similarity=0.321 Sum_probs=75.2
Q ss_pred CCCCccEEEEcCCchhhhhcc----CCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccE
Q 020667 107 EFPSLKELWISGCPKFMERYN----RTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEY 182 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~----~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~ 182 (323)
.+++++.|++++|. +..++ +++.| .+.+|..+..+|..+ .++|++|++++|..+..+ | ++|+.
T Consensus 50 ~~~~l~~L~Is~c~--L~sLP~LP~sLtsL-~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--P------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCD--IESLPVLPNELTEI-TIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--P------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCC--CcccCCCCCCCcEE-EccCCCCcccCCchh--hhhhhheEccCccccccc--c------cccce
Confidence 46788889888881 11111 23444 355566655555432 235666666666544433 1 13455
Q ss_pred EEEcc--CcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC-CcccEEeecCCCCCcccCCCCCCC
Q 020667 183 MEIES--CDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF-PSLERLVLDDCPSMKIFSEGNSST 259 (323)
Q Consensus 183 L~l~~--c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~ 259 (323)
|++.. |..+..+ .++|+.|.+.+.......... ..+ ++|++|.+.+|..+. +|..+ +
T Consensus 117 L~L~~n~~~~L~~L--------------PssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~L--P 176 (426)
T PRK15386 117 LEIKGSATDSIKNV--------------PNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKL--P 176 (426)
T ss_pred EEeCCCCCcccccC--------------cchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccccc--c
Confidence 55432 1122222 245666666442211111100 124 479999999888653 55433 4
Q ss_pred CCcceeEccCc--ccccc-ccchhhhceeeeccc
Q 020667 260 PKLHEVQWPGE--ARWAW-KDDLNTTIQKVIFPA 290 (323)
Q Consensus 260 ~~L~~L~l~~~--~~~~~-~~~l~~~l~~l~~~~ 290 (323)
.+|+.|++..+ ..+.. ...+|+.+ .+.+.+
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n 209 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQN 209 (426)
T ss_pred ccCcEEEecccccccccCccccccccc-Eechhh
Confidence 68888888332 12222 23455555 444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.1e-07 Score=72.57 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=41.2
Q ss_pred cCCcccEEeeecccccceeccchhHh-cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVS-SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~-~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 99 (323)
+..++++|+|.+ +.++.+ .. ++ .+.+|+.|+++++. ++.+ . .+..++.|+.|+++++ .++.+.
T Consensus 17 n~~~~~~L~L~~-n~I~~I-e~--L~~~l~~L~~L~Ls~N~-I~~l--~--------~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQISTI-EN--LGATLDKLEVLDLSNNQ-ITKL--E--------GLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS---S----T--------T----TT--EEE--SS----S-C
T ss_pred cccccccccccc-cccccc-cc--hhhhhcCCCEEECCCCC-Cccc--c--------CccChhhhhhcccCCC-CCCccc
Confidence 566789999998 667754 33 44 57889999999774 3311 1 1226788888888876 455554
Q ss_pred ccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCccee-cchhHHhccc
Q 020667 100 TSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIV-LTFSIAKTLV 178 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~l~~l~ 178 (323)
... ...+|+|++|+++++. |.....+ ..+..+++|+.|++.+++-...- .....+..+|
T Consensus 81 ~~l--~~~lp~L~~L~L~~N~--------------I~~l~~l----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 81 EGL--DKNLPNLQELYLSNNK--------------ISDLNEL----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp HHH--HHH-TT--EEE-TTS-----------------SCCCC----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred cch--HHhCCcCCEEECcCCc--------------CCChHHh----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 321 1247888888887751 1111111 22445677888888776532211 1123456677
Q ss_pred cccEEEEc
Q 020667 179 RLEYMEIE 186 (323)
Q Consensus 179 ~L~~L~l~ 186 (323)
+|+.|+-.
T Consensus 141 ~Lk~LD~~ 148 (175)
T PF14580_consen 141 SLKVLDGQ 148 (175)
T ss_dssp T-SEETTE
T ss_pred hhheeCCE
Confidence 77776543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.7e-06 Score=74.74 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=18.0
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
++|+.|.+++|..+. +| . ....+|+.|.+..+
T Consensus 156 sSLk~L~Is~c~~i~-LP--------~--~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LP--------E--KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cc--------c--cccccCcEEEeccc
Confidence 467777777776442 22 0 12346777777653
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-07 Score=81.08 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=130.6
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeecc-ccc-----------------cCC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDN-QEE-----------------RKN 76 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~-~~~-----------------~~~ 76 (323)
|..|+ .+++|+.|+|+. ++++.+.|.. +..+++|..|.+.+...+++ ++.. ++. ...
T Consensus 84 ~~aF~-~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~--l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 84 PGAFK-TLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITD--LPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred hhhcc-chhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhh--hhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 44566 999999999999 8999887765 77888898888888777773 3322 120 011
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchh--------h----------hhc--c---------
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKF--------M----------ERY--N--------- 127 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~--------~----------~~l--~--------- 127 (323)
.+..+++|..|.+.++ .+..++... +..+.+++.+++..+|.. . +.+ .
T Consensus 159 al~dL~~l~lLslyDn-~~q~i~~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDN-KIQSICKGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHhhhcchhcccch-hhhhhcccc--ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 1224555555565554 344444432 235666777776655411 0 000 0
Q ss_pred -----------CCcceee--ecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccce
Q 020667 128 -----------RTTNILT--ERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITE 193 (323)
Q Consensus 128 -----------~L~~L~~--i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~ 193 (323)
.++.+.. ...|.-...-|. -+..+++|+.|+++++. ++.+- ..++.++..+++|++..+. ++.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~-~~aFe~~a~l~eL~L~~N~-l~~ 312 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIE-DGAFEGAAELQELYLTRNK-LEF 312 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhh-hhhhcchhhhhhhhcCcch-HHH
Confidence 0000000 011101111111 14578999999999875 66553 4567888999999998864 555
Q ss_pred eeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 194 IVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 194 i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. ...+..+..|+.|++++ .+++.+.... +..+.+|.+|.+-.+|
T Consensus 313 v~-------~~~f~~ls~L~tL~L~~-N~it~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 313 VS-------SGMFQGLSGLKTLSLYD-NQITTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred HH-------HHhhhccccceeeeecC-CeeEEEeccc-ccccceeeeeehccCc
Confidence 54 23446788999999999 5888886654 5667788888886655
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-07 Score=87.06 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=74.0
Q ss_pred cCCcccEEeeecccccce--eccchhHhcCCCccEEEEecC-CCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRY--LFSSSIVSSFVRLQRIEIVEC-PVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~--~~p~~~~~~l~~L~~L~ls~c-~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
.+++|+.|.+.+|..++. +.+. ...+++|+.|++++| .... ..+.. .......+++|+.|+++.+..+.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~~~---~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL--ALKCPNLEELDLSGCCLLIT--LSPLL---LLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH--HhhCchhheecccCcccccc--cchhH---hhhhhhhcCCcCccchhhhhccCc
Confidence 467888888888777765 2222 457788888888774 2222 10100 001122567777788777765544
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
...... ...+++|+.|.+.+|+...+. .+-.....+++|++|+++.|..+++........++
T Consensus 259 ~~l~~l-~~~c~~L~~L~l~~c~~lt~~-----------------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 259 IGLSAL-ASRCPNLETLSLSNCSNLTDE-----------------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hhHHHH-HhhCCCcceEccCCCCccchh-----------------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 433322 224777888877777542111 00011234455666666666665443333334445
Q ss_pred ccccEEEE
Q 020667 178 VRLEYMEI 185 (323)
Q Consensus 178 ~~L~~L~l 185 (323)
++|+.|.+
T Consensus 321 ~~l~~l~~ 328 (482)
T KOG1947|consen 321 PNLRELKL 328 (482)
T ss_pred cchhhhhh
Confidence 55555443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=53.54 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=40.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
|+|++|++++ ++++.+ |...+..+++|++|+++++ .++ .++.. .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~-n~l~~i-~~~~f~~l~~L~~L~l~~N-~l~--~i~~~------~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEI-PPDSFSNLPNLETLDLSNN-NLT--SIPPD------AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-STESEE-CTTTTTTGTTESEEEETSS-SES--EEETT------TTTTSTTESEEEETSS
T ss_pred CcCcEEECCC-CCCCcc-CHHHHcCCCCCCEeEccCC-ccC--ccCHH------HHcCCCCCCEEeCcCC
Confidence 5788888888 478876 5555788888888888855 344 22221 1226778888887776
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.6e-06 Score=74.89 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=33.6
Q ss_pred cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 47 SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 47 ~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
++.+|+...+.+|+- . ..+.+ .-+..|++++.|+++.+ -+..|.....-+..+|+|+.|.++.+
T Consensus 119 n~kkL~~IsLdn~~V-~--~~~~~-----~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-E--DAGIE-----EYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hHHhhhheeecCccc-c--ccchh-----hhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc
Confidence 566666666666532 1 11100 12236777777777765 23333221111236777777777765
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=51.96 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=14.3
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
.+++|++|+++++ +++.++... +..+++|++|++++
T Consensus 23 ~l~~L~~L~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 23 NLPNLETLDLSNN-NLTSIPPDA-FSNLPNLRYLDLSN 58 (61)
T ss_dssp TGTTESEEEETSS-SESEEETTT-TTTSTTESEEEETS
T ss_pred CCCCCCEeEccCC-ccCccCHHH-HcCCCCCCEEeCcC
Confidence 3444444444432 344443322 23344444444444
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-06 Score=72.50 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=20.0
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
.+=+|..|++.+ .++..+..-..++++|.|+.+.+.++|
T Consensus 372 KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 344555555555 244444333344556666666665544
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.4e-05 Score=61.82 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=8.9
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEcc
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIES 187 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~ 187 (323)
.+++|++|+++++. ++++. ......+|+|++|++++
T Consensus 62 ~L~~L~~L~L~~N~-I~~i~-~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 62 GLPRLKTLDLSNNR-ISSIS-EGLDKNLPNLQELYLSN 97 (175)
T ss_dssp --TT--EEE--SS----S-C-HHHHHH-TT--EEE-TT
T ss_pred ChhhhhhcccCCCC-CCccc-cchHHhCCcCCEEECcC
Confidence 34455555555442 33331 01112345555555544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.6e-05 Score=72.07 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=42.3
Q ss_pred cccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccc
Q 020667 142 VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLE 221 (323)
Q Consensus 142 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~ 221 (323)
..+|..+.....|+++.++++..... +..+..+.++..+.+.++. +..++ ..+..+++++.|++.++
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~-~~~~~--------~~~~~l~~l~~L~~s~n- 265 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNK-LEDLP--------ESIGNLSNLETLDLSNN- 265 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCce-eeecc--------chhccccccceeccccc-
Confidence 33433333334466666655532222 2234455555555543332 22211 12234555666666663
Q ss_pred ccceecCCCccccCCcccEEeecCCCCC
Q 020667 222 SLTSFCSGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 222 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l 249 (323)
.+.+++. ...+.+++.|++++....
T Consensus 266 ~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 266 QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccccc---ccccCccCEEeccCcccc
Confidence 4555543 234556666666554433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.4e-06 Score=80.73 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=63.3
Q ss_pred cCCcccEEeeecc-cccceecc---chhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 21 GIQNLMHLTLRSC-MNLRYLFS---SSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 21 ~l~~L~~L~L~~c-~~l~~~~p---~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+++|++|++++| ...... + ..+...+++|+.|+++.|..+.+..+..... .+++|+.|.+.+|..++
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~-------~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLS-PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS-------RCPNLETLSLSNCSNLT 283 (482)
T ss_pred hCchhheecccCcccccccc-hhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh-------hCCCcceEccCCCCccc
Confidence 6899999999983 333321 2 2234568999999999998765322221111 48899999999898654
Q ss_pred cccccCccccCCCCccEEEEcCCchh
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKF 122 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~ 122 (323)
+...... ...+++|++|++++|...
T Consensus 284 ~~gl~~i-~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 284 DEGLVSI-AERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHH-HHhcCcccEEeeecCccc
Confidence 4333222 347899999999999654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=71.57 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=61.3
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
.++.|+|++ +++++.+|.. ++.+++|+.|+|+++.... ..+..+..+++|+.|+++++.-.+.+|...
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g---------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l- 486 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPND-ISKLRHLQSINLSGNSIRG---------NIPPSLGSITSLEVLDLSYNSFNGSIPESL- 486 (623)
T ss_pred EEEEEECCC-CCccccCCHH-HhCCCCCCEEECCCCcccC---------cCChHHhCCCCCCEEECCCCCCCCCCchHH-
Confidence 378889988 6788777776 7889999999998874332 233344588899999999885545566653
Q ss_pred cccCCCCccEEEEcCC
Q 020667 104 GILEFPSLKELWISGC 119 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~c 119 (323)
..+++|+.|++++|
T Consensus 487 --~~L~~L~~L~Ls~N 500 (623)
T PLN03150 487 --GQLTSLRILNLNGN 500 (623)
T ss_pred --hcCCCCCEEECcCC
Confidence 47889999999887
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=65.00 Aligned_cols=112 Identities=24% Similarity=0.283 Sum_probs=73.0
Q ss_pred ccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 141 LVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 141 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
+.++|...+..++|+.|+++++. +..+ +........|++|.++++..+..+. .+..+.++..+.+.+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~---------~~~~~~~l~~l~l~~- 241 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDL--PPEIELLSALEELDLSNNSIIELLS---------SLSNLKNLSGLELSN- 241 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccC--chhhhhhhhhhhhhhcCCcceecch---------hhhhcccccccccCC-
Confidence 33444444467889999998874 6666 3333445568899888875333322 224566677776554
Q ss_pred cccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 221 ESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 221 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
..+..++. ....++++++|++++ +.+..++. +....+++.+++.+
T Consensus 242 n~~~~~~~--~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 242 NKLEDLPE--SIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ceeeeccc--hhccccccceecccc-cccccccc-ccccCccCEEeccC
Confidence 34444322 235688899999966 67777877 66888999999954
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.44 E-value=4.5e-06 Score=77.33 Aligned_cols=170 Identities=13% Similarity=0.096 Sum_probs=112.7
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccCCCCCCC
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLVPSSTSF 151 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l 151 (323)
....|..|+.+.++.+ .+..++... ..+..|..|+++.+. ..+..+ .|+-| |..+++++.+|+.++..
T Consensus 93 ~~~~f~~Le~liLy~n-~~r~ip~~i---~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvl--i~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 93 EACAFVSLESLILYHN-CIRTIPEAI---CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVL--IVSNNKLTSLPEEIGLL 165 (722)
T ss_pred HHHHHHHHHHHHHHhc-cceecchhh---hhhhHHHHhhhccchhhcCChhhhcC-cceeE--EEecCccccCCcccccc
Confidence 3336667777777654 455566553 367777777777662 222211 23333 66778888999989988
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
..|..|+.+.|. +..+ ++.++++.+|+.|.+..+. +..+| .++.. =.|..|+++. .++..+|..
T Consensus 166 ~tl~~ld~s~ne-i~sl--psql~~l~slr~l~vrRn~-l~~lp--------~El~~-LpLi~lDfSc-Nkis~iPv~-- 229 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSL--PSQLGYLTSLRDLNVRRNH-LEDLP--------EELCS-LPLIRLDFSC-NKISYLPVD-- 229 (722)
T ss_pred hhHHHhhhhhhh-hhhc--hHHhhhHHHHHHHHHhhhh-hhhCC--------HHHhC-Cceeeeeccc-Cceeecchh--
Confidence 899999998874 5555 6778899999999988754 66666 23232 3567788875 689999875
Q ss_pred cccCCcccEEeecCCCCCcccCCCCCCC---CCcceeEccCc
Q 020667 232 AFKFPSLERLVLDDCPSMKIFSEGNSST---PKLHEVQWPGE 270 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~---~~L~~L~l~~~ 270 (323)
+.++..|++|.+.+ +-+++=|..++.- --.|+|++..|
T Consensus 230 fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 47899999999965 5566666544322 22355555443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=3.2e-05 Score=75.85 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=17.5
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEcc
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIES 187 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~ 187 (323)
.+|++|..|||++++ ++++ .+++.|.+|+.|.+.+
T Consensus 170 ~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred hccCccceeecCCCC-ccCc---HHHhccccHHHHhccC
Confidence 345555566665553 3333 3445555555555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=7.2e-05 Score=73.40 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=21.0
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
.||+|+.|.+.+-.-........ ..+||+|..|+|+++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~l--c~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQL--CASFPNLRSLDISGT 183 (699)
T ss_pred hCcccceEEecCceecchhHHHH--hhccCccceeecCCC
Confidence 57777777776543222211111 135777777777775
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.36 E-value=1.9e-05 Score=67.96 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
+-++++|.++.+. ++++ ++++.+=+|..|++.++. ++++. ....++.+|.|+.+.+.+.
T Consensus 351 LGNIKtL~La~N~-iE~L---SGL~KLYSLvnLDl~~N~-Ie~ld------eV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 351 LGNIKTLKLAQNK-IETL---SGLRKLYSLVNLDLSSNQ-IEELD------EVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hcCEeeeehhhhh-Hhhh---hhhHhhhhheeccccccc-hhhHH------HhcccccccHHHHHhhcCC
Confidence 3455555555542 3332 345555556666665543 33322 0123456666666666553
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00042 Score=67.87 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=64.4
Q ss_pred CCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCcc
Q 020667 154 LTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCA 232 (323)
Q Consensus 154 L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~ 232 (323)
++.|+++++..-..+ +..+..+++|+.|++++|...+.+| ..++.+++|+.|+++++ ++. .+|.. .
T Consensus 420 v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g~iP--------~~~~~l~~L~~LdLs~N-~lsg~iP~~--l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIP--------PSLGSITSLEVLDLSYN-SFNGSIPES--L 486 (623)
T ss_pred EEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccCcCC--------hHHhCCCCCCEEECCCC-CCCCCCchH--H
Confidence 666777766533333 4456777788888887776555555 34467777888888775 444 34432 3
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCC-CCcceeEcc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSST-PKLHEVQWP 268 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~L~l~ 268 (323)
..+++|+.|++++|...+.+|..+... .++..+++.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 567778888887776666777665432 345566663
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.27 E-value=3.8e-05 Score=71.40 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=17.2
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
..+.|..|+.+.| .+..++.... .+.+|+.|.++.+
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsql~---~l~slr~l~vrRn 199 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQLG---YLTSLRDLNVRRN 199 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHHhh---hHHHHHHHHHhhh
Confidence 4455555555544 3444444432 4555555555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00055 Score=41.82 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=28.5
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLK 63 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~ 63 (323)
++|++|++++ ++++.+ |+. ++++++|+.|++++++ ++
T Consensus 1 ~~L~~L~l~~-N~i~~l-~~~-l~~l~~L~~L~l~~N~-i~ 37 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDL-PPE-LSNLPNLETLNLSNNP-IS 37 (44)
T ss_dssp TT-SEEEETS-SS-SSH-GGH-GTTCTTSSEEEETSSC-CS
T ss_pred CcceEEEccC-CCCccc-Cch-HhCCCCCCEEEecCCC-CC
Confidence 5799999998 788886 554 7899999999999884 44
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.004 Score=37.98 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceee
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIV 195 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~ 195 (323)
++|++|+++++. ++++ +..++++++|+.|++++|. +.+++
T Consensus 1 ~~L~~L~l~~N~-i~~l--~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDL--PPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSH--GGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-Cccc--CchHhCCCCCCEEEecCCC-CCCCc
Confidence 467888888774 6665 3447788888888888874 55554
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.00019 Score=68.83 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=54.1
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCCCCC
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSSTSF 151 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l 151 (323)
++.-++.|+.|+++.+ ++..... ...++.|+.|+|+++ |.+-..=.+|..| +-.++.++++ ..+.++
T Consensus 182 SLqll~ale~LnLshN-k~~~v~~----Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L--~lrnN~l~tL-~gie~L 253 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVDN----LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL--NLRNNALTTL-RGIENL 253 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhHH----HHhcccccccccccchhccccccchhhhhheee--eecccHHHhh-hhHHhh
Confidence 3446788889999887 4554442 236888888888865 1110000012222 1122233333 234566
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
.+|+.|+++.+-... -.....+..|..|..|++.+++
T Consensus 254 ksL~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCc
Confidence 667777776553222 1222345556666677766654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.00089 Score=54.58 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=32.9
Q ss_pred hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 46 SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 46 ~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
..++.++.|.+.+|..+.++-+..-.+ ..++|+.|+|++|+.+++....- ...+++|+.|.|.+-
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~~--L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLAC--LLKLKNLRRLHLYDL 186 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHHH--HHHhhhhHHHHhcCc
Confidence 455555555566665554332222112 35566666666666655432221 124566666666554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.02 Score=46.95 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=45.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccc-c
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSF-C 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~ 99 (323)
.++.|.+|.+.+ +.++.+-|. +...+++|+.|.+.++. +.++ .+-. .+..||.|++|.+-+++--..- +
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnNs-i~~l--~dl~-----pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNNS-IQEL--GDLD-----PLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CccccceEEecC-Ccceeeccc-hhhhccccceEEecCcc-hhhh--hhcc-----hhccCCccceeeecCCchhcccCc
Confidence 566777777766 667765443 23456667777776543 2211 1111 1225667777776665421100 0
Q ss_pred ccCccccCCCCccEEEEcCC
Q 020667 100 TSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~c 119 (323)
... ....+|+|+.|++.+-
T Consensus 132 R~y-vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLY-VLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeE-EEEecCcceEeehhhh
Confidence 010 1235677777776654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0043 Score=53.72 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=36.7
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
-+|++..+-+..|+ +++...+ ...-.+|.+..|.++. .++.+...-.....+|.|.-|.+.+.|....+.
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~e------k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSE------KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccchheeeecCc-ccchhhc------ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 46677777777766 2222211 1113455666666654 233333221223457777777777777665443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.00063 Score=58.19 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
+.+.+.|++.+|. +.++ +.....+.|+.|.++-+. +..+. .+..+.+|++|+|.. ..+.++.+-.
T Consensus 18 l~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNk-IssL~---------pl~rCtrLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNK-ISSLA---------PLQRCTRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCC-ccHH---HHHHhcccceeEEeeccc-cccch---------hHHHHHHHHHHHHHh-cccccHHHHH
Confidence 4567788888884 6665 457788999999998654 44442 235788999998877 3566655434
Q ss_pred ccccCCcccEEeecCCCCCcccCCC-----CCCCCCcceeEc
Q 020667 231 CAFKFPSLERLVLDDCPSMKIFSEG-----NSSTPKLHEVQW 267 (323)
Q Consensus 231 ~~~~l~~L~~L~l~~c~~l~~lp~~-----~~~~~~L~~L~l 267 (323)
...++|+|+.|.|..+|-.+.-+.. +..+|+|++|+=
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 4567899999999988876654443 346788888864
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.0019 Score=62.26 Aligned_cols=114 Identities=20% Similarity=0.139 Sum_probs=71.0
Q ss_pred CCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeec
Q 020667 138 CDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKL 217 (323)
Q Consensus 138 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l 217 (323)
|+.+..+..++.-++.|+.|++++++ +++. ..+..++.|++|+|+++. +..+|... . .. .+|+.|.|
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk-~~~v---~~Lr~l~~LkhLDlsyN~-L~~vp~l~------~-~g-c~L~~L~l 239 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNK-FTKV---DNLRRLPKLKHLDLSYNC-LRHVPQLS------M-VG-CKLQLLNL 239 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhh-hhhh---HHHHhcccccccccccch-hccccccc------h-hh-hhheeeee
Confidence 44445555566667889999999885 4433 467888999999998754 66665211 0 12 24888888
Q ss_pred ccccccceecCCCccccCCcccEEeecCCCCCc--ccCCCCCCCCCcceeEccC
Q 020667 218 LNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK--IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 218 ~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~L~~L~l~~ 269 (323)
.| ..++.+- .+.++.+|+.|+++++-..+ .+-. +..+..|+.|++.|
T Consensus 240 rn-N~l~tL~---gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 240 RN-NALTTLR---GIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEG 288 (1096)
T ss_pred cc-cHHHhhh---hHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcC
Confidence 87 3555542 23567888888887743222 1111 22456777777766
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.01 Score=50.41 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=63.4
Q ss_pred hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc--cccccccccCccccCCCCccEEEEcCCchhh
Q 020667 46 SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL--ENFTSFCTSNLGILEFPSLKELWISGCPKFM 123 (323)
Q Consensus 46 ~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~ 123 (323)
..+..|+.|.+.++..... .....+|+|++|.++++ .-..++.... ..+|+|++|.++++..
T Consensus 40 d~~~~le~ls~~n~gltt~-----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~---e~~P~l~~l~ls~Nki-- 103 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-----------TNFPKLPKLKKLELSDNYRRVSGGLEVLA---EKAPNLKVLNLSGNKI-- 103 (260)
T ss_pred ccccchhhhhhhccceeec-----------ccCCCcchhhhhcccCCcccccccceehh---hhCCceeEEeecCCcc--
Confidence 3566677776665543321 11226788888888876 2233333332 2568888888887621
Q ss_pred hhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec--chhHHhccccccEEEEccCcc
Q 020667 124 ERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL--TFSIAKTLVRLEYMEIESCDR 190 (323)
Q Consensus 124 ~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~l~~l~~L~~L~l~~c~~ 190 (323)
.. +.++ ..+..+.+|..|++.+|.-.. +. .-..+.-+++|++|+-.++..
T Consensus 104 ------------~~---lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 104 ------------KD---LSTL-RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ------------cc---cccc-chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 11 2222 225566778888888875332 21 122455677888877665543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.003 Score=51.59 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=53.3
Q ss_pred CCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccc
Q 020667 154 LTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAF 233 (323)
Q Consensus 154 L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 233 (323)
++.++-+++. +...+ ...+..+++++.|.+.+|..+++.-.+. --+..++|+.|+|++|+++++.... +..
T Consensus 103 IeaVDAsds~-I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~------l~~~~~~L~~L~lsgC~rIT~~GL~-~L~ 173 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLER------LGGLAPSLQDLDLSGCPRITDGGLA-CLL 173 (221)
T ss_pred EEEEecCCch-HHHHH-HHHHhccchhhhheeccccchhhHHHHH------hcccccchheeeccCCCeechhHHH-HHH
Confidence 4455555443 22211 2345666777777777777766543111 0135678888888888888876553 356
Q ss_pred cCCcccEEeecCCCCCc
Q 020667 234 KFPSLERLVLDDCPSMK 250 (323)
Q Consensus 234 ~l~~L~~L~l~~c~~l~ 250 (323)
.+++|+.|.+.+-+.+.
T Consensus 174 ~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhhhhHHHHhcCchhhh
Confidence 77888888887765543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.0077 Score=56.11 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=18.9
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCc
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
+++|+.++++++. +..+.... +..+.+++.+.+.++.
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 5566666666654 22221101 3556666666666544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.073 Score=46.37 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=46.2
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEe
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVV 159 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l 159 (323)
....+++|++.++ .+..|.....-...+|.|+.|+|+.+|- .+.++++| ....+|+.|.+
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L----------------~s~I~~lp---~p~~nl~~lVL 128 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSL----------------SSDIKSLP---LPLKNLRVLVL 128 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcC----------------CCccccCc---ccccceEEEEE
Confidence 4566777777765 3443332111023677888887765421 11122332 13457777777
Q ss_pred ecCcCcceecchhHHhccccccEEEEccC
Q 020667 160 SCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 160 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+-. +.--...+.+..+|.++.|+++.+
T Consensus 129 NgT~-L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 129 NGTG-LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCCC-CChhhhhhhhhcchhhhhhhhccc
Confidence 6542 211111334566777777777665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.0042 Score=53.27 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=54.3
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+.+.|+..+| ++.++ ++...++.|++|.||-+ .+..+. .+..|.+|++|++..+ .+..+..
T Consensus 17 dl~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~----------pl~rCtrLkElYLRkN-~I~sldE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA----------PLQRCTRLKELYLRKN-CIESLDE 80 (388)
T ss_pred HHHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch----------hHHHHHHHHHHHHHhc-ccccHHH
Confidence 3667888999986 46664 43578999999998843 333111 1226788888888765 2333322
Q ss_pred cCccccCCCCccEEEEcCCc
Q 020667 101 SNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp 120 (323)
... ..++|+|+.|.|..+|
T Consensus 81 L~Y-LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 81 LEY-LKNLPSLRTLWLDENP 99 (388)
T ss_pred HHH-HhcCchhhhHhhccCC
Confidence 211 2478999999998875
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.055 Score=25.55 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=6.3
Q ss_pred cccEEeecCCCCCcccC
Q 020667 237 SLERLVLDDCPSMKIFS 253 (323)
Q Consensus 237 ~L~~L~l~~c~~l~~lp 253 (323)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555554 44443
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.054 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=10.8
Q ss_pred cccEEeecCCCCCcccCCCC
Q 020667 237 SLERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 237 ~L~~L~l~~c~~l~~lp~~~ 256 (323)
+|++|++++| .++.+|.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3566666665 455666543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.016 Score=51.24 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=50.6
Q ss_pred cCCcccEEeeeccccccee----ccchh------HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecc
Q 020667 21 GIQNLMHLTLRSCMNLRYL----FSSSI------VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMF 90 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~----~p~~~------~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (323)
+-++|+..++++. .+|- +|+.+ +-.+++|++|+||++.-=. .....++ .-+..+..|++|.+.
T Consensus 56 ~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~--~g~~~l~---~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 56 SKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP--KGIRGLE---ELLSSCTDLEELYLN 128 (382)
T ss_pred hcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc--cchHHHH---HHHHhccCHHHHhhh
Confidence 5677888887762 3331 23322 2356789999999864221 1111111 122357889999998
Q ss_pred cccccccccccC-----------ccccCCCCccEEEEcCC
Q 020667 91 NLENFTSFCTSN-----------LGILEFPSLKELWISGC 119 (323)
Q Consensus 91 ~~~~l~~~~~~~-----------~~~~~l~~L~~L~l~~c 119 (323)
+|. ++...... .-+..-+.|+.+...++
T Consensus 129 N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 129 NCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 884 32211111 00235678999988776
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.064 Score=45.63 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC-
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS- 228 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~- 228 (323)
.+++|+.|.++.++.-........+..+|+|++|+++++. +..+.. ...+..+.+|..|++.+|+... +..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lst------l~pl~~l~nL~~Ldl~n~~~~~-l~dy 134 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLST------LRPLKELENLKSLDLFNCSVTN-LDDY 134 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccc------cchhhhhcchhhhhcccCCccc-cccH
Confidence 4678888888877322222213345566888888888765 222210 0122456677788888876444 211
Q ss_pred -CCccccCCcccEEeecCCCCCc
Q 020667 229 -GNCAFKFPSLERLVLDDCPSMK 250 (323)
Q Consensus 229 -~~~~~~l~~L~~L~l~~c~~l~ 250 (323)
...+..+|+|++|+-.++..-.
T Consensus 135 re~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 135 REKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HHHHHHHhhhhccccccccCCcc
Confidence 1123357788888777765543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.32 Score=40.06 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=39.6
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+...+++++ +.+..+ +. +..++.|.+|.+.++. +. .+....+ ..+|+|..|.+.++ ++..+.....
T Consensus 43 ~~d~iDLtd-Ndl~~l-~~--lp~l~rL~tLll~nNr-It--~I~p~L~------~~~p~l~~L~LtnN-si~~l~dl~p 108 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKL-DN--LPHLPRLHTLLLNNNR-IT--RIDPDLD------TFLPNLKTLILTNN-SIQELGDLDP 108 (233)
T ss_pred ccceecccc-cchhhc-cc--CCCccccceEEecCCc-ce--eeccchh------hhccccceEEecCc-chhhhhhcch
Confidence 444555555 444332 33 4556666666666542 33 1111111 14566777776664 2333222111
Q ss_pred cccCCCCccEEEEcCCc
Q 020667 104 GILEFPSLKELWISGCP 120 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp 120 (323)
...||.|++|.+-++|
T Consensus 109 -La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 109 -LASCPKLEYLTLLGNP 124 (233)
T ss_pred -hccCCccceeeecCCc
Confidence 2356677777666654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.038 Score=48.92 Aligned_cols=242 Identities=17% Similarity=0.142 Sum_probs=121.1
Q ss_pred cCCcccEEeeecccccceeccc---hhHhcCCCccEEEEecCCC--CceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSS---SIVSSFVRLQRIEIVECPV--LKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~---~~~~~l~~L~~L~ls~c~~--l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
.+..++++++++ +.+..-.-. ..+.+.++|+..+++++-- ++. .++.......+.+..+|+|++|+++++-.-
T Consensus 28 ~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~-Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKD-EIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHH-HHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 577889999998 443210011 1145677888888876521 110 011111111223446789999999987422
Q ss_pred ccccccCc-cccCCCCccEEEEcCC---chhhhhc-------------cCCcceee-ecCCCCccccCC-----CCCCCC
Q 020667 96 TSFCTSNL-GILEFPSLKELWISGC---PKFMERY-------------NRTTNILT-ERGCDHLVDLVP-----SSTSFQ 152 (323)
Q Consensus 96 ~~~~~~~~-~~~~l~~L~~L~l~~c---p~~~~~l-------------~~L~~L~~-i~~~~~l~~l~~-----~~~~l~ 152 (323)
...+.... -...+.+|++|.+.+| |..-+.+ ++-..|+. +.+-+.+.+.+. .+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 11111100 0236889999999999 3221111 11112211 233333332211 123346
Q ss_pred CCCEEEeecCcCcce-e-cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 153 NLTNLVVSCCKGLKI-V-LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~-l-~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
.|+.+.+..+.-... . -....+..++.|+.|++.++..-..-. ..-...+..+++|++|++.+| .++.-....
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----VALAKALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----HHHHHHhcccchheeeccccc-ccccccHHH
Confidence 677777766532111 0 002245667888888887765322211 000122356778888888887 444321100
Q ss_pred ----ccccCCcccEEeecCCCCCc----ccCCCCCCCCCcceeEccC
Q 020667 231 ----CAFKFPSLERLVLDDCPSMK----IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 231 ----~~~~l~~L~~L~l~~c~~l~----~lp~~~~~~~~L~~L~l~~ 269 (323)
.....|+|+.|.+.+|.--. .+-..+..-|.|++|.+.|
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 11247888888887764322 1222223467888888844
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.28 Score=25.87 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=9.7
Q ss_pred CcccEEeeecccccce
Q 020667 23 QNLMHLTLRSCMNLRY 38 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~ 38 (323)
++|++|+|++|.++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5566666666666553
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.26 Score=45.93 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=45.7
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+|..|++.+ +.++.+... +..+++|++|++++.. ++.+. .+..++.|+.|++.++. +..+..
T Consensus 93 ~~~~l~~l~l~~-n~i~~i~~~--l~~~~~L~~L~ls~N~-I~~i~----------~l~~l~~L~~L~l~~N~-i~~~~~ 157 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKIENL--LSSLVNLQVLDLSFNK-ITKLE----------GLSTLTLLKELNLSGNL-ISDISG 157 (414)
T ss_pred cccceeeeeccc-cchhhcccc--hhhhhcchheeccccc-ccccc----------chhhccchhhheeccCc-chhccC
Confidence 677788888877 777765332 4567788888877643 22111 11145556666666652 333332
Q ss_pred cCccccCCCCccEEEEcCC
Q 020667 101 SNLGILEFPSLKELWISGC 119 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c 119 (323)
. ..+++|+.+++.++
T Consensus 158 ~----~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 158 L----ESLKSLKLLDLSYN 172 (414)
T ss_pred C----ccchhhhcccCCcc
Confidence 2 13566666666665
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=85.11 E-value=6.3 Score=29.46 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=43.9
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG 229 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 229 (323)
+.++|+.+.+.+ .++.+. ...+.++++|+.+.+.+ .+..+. ...+..+++++.+.+.+ .+..++..
T Consensus 10 ~~~~l~~i~~~~--~~~~I~-~~~F~~~~~l~~i~~~~--~~~~i~-------~~~F~~~~~l~~i~~~~--~~~~i~~~ 75 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIG-ENAFSNCTSLKSINFPN--NLTSIG-------DNAFSNCKSLESITFPN--NLKSIGDN 75 (129)
T ss_dssp T-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESS--TTSCE--------TTTTTT-TT-EEEEETS--TT-EE-TT
T ss_pred CCCCCCEEEECC--CeeEeC-hhhcccccccccccccc--cccccc-------eeeeecccccccccccc--cccccccc
Confidence 445667666653 344442 22355666777777765 244444 12234455677777754 55555543
Q ss_pred CccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 230 NCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
. +..+++|+.+.+.. .+..++.....-.+|+.+.+
T Consensus 76 ~-F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~ 110 (129)
T PF13306_consen 76 A-FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINI 110 (129)
T ss_dssp T-TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-
T ss_pred c-ccccccccccccCc--cccEEchhhhcCCCceEEEE
Confidence 2 34567777777743 25555544332236777766
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.70 E-value=0.07 Score=41.18 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=55.4
Q ss_pred CCEEEeecCcCcceec-chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 154 LTNLVVSCCKGLKIVL-TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 154 L~~L~l~~c~~l~~l~-~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+-.+++++|.. ..+. .+..+.....|...+++++. +..+|. .-...+|.++.|++.+ .++.++|.+.
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~-fk~fp~-------kft~kf~t~t~lNl~~-neisdvPeE~-- 96 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNG-FKKFPK-------KFTIKFPTATTLNLAN-NEISDVPEEL-- 96 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccch-hhhCCH-------HHhhccchhhhhhcch-hhhhhchHHH--
Confidence 44566666642 2221 12233444455666776653 455541 1113566777888877 5777887763
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
..+|.|+.|+++.++ +...|.-+..+.++-.|+.
T Consensus 97 Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 668888888887744 4445554433333334433
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.97 E-value=0.21 Score=38.62 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=20.7
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp 120 (323)
.|+.++.|++.++ .+.++|... ..++.|+.|+++.+|
T Consensus 75 kf~t~t~lNl~~n-eisdvPeE~---Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANN-EISDVPEEL---AAMPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchh-hhhhchHHH---hhhHHhhhcccccCc
Confidence 4455566666554 455555552 356666666666653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 41/245 (16%)
Query: 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEER 74
+ + L + + ++++++++ + E Q+
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK-- 316
Query: 75 KNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEF----PSLKELWISGCPKFMERYNRTT 130
P L+ L+ N + G+ LK L I +
Sbjct: 317 ------CPNLEVLETRN-------VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363
Query: 131 NILTERGCDHLVDLVPSSTSFQNLTNLVVSCCK----GLKIVLTFSIAKTLVRLEYMEIE 186
+ ++RG L + Q L + V L+ + T+ K L + ++
Sbjct: 364 LV-SQRGLIAL------AQGCQELEYMAVYVSDITNESLESIGTYL--KNLCDFRLVLLD 414
Query: 187 SCDRITEIVLVDDVAAKDEVITFRELKELKLLNLES----LTSFCSGNCAFKFPSLERLV 242
+RIT++ L + V + K+L+ LT P++ ++
Sbjct: 415 REERITDLPLDNGVRS-----LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469
Query: 243 LDDCP 247
L
Sbjct: 470 LGYVG 474
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 28/247 (11%)
Query: 12 LSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPV----LKELIV 67
L + + + +L + + + I ++ +L+ + V L L
Sbjct: 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA- 133
Query: 68 MDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYN 127
L+ LK+ FT+ ++ +K L +
Sbjct: 134 ----------KARADDLETLKLDKCSGFTTDGLLSIVTH-CRKIKTLLMEESSFS----E 178
Query: 128 RTTNILTE--RGCDHLVDLVPSSTSFQNLTN----LVVSCCKGLK-IVLTFSIAKTLVRL 180
+ L E + L L T F ++ + C+ L + + LV
Sbjct: 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238
Query: 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLER 240
+ + + L +D+ ++ + ++L L L + + +
Sbjct: 239 -FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297
Query: 241 LVLDDCP 247
L L
Sbjct: 298 LDLLYAL 304
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 30/244 (12%), Positives = 63/244 (25%), Gaps = 33/244 (13%)
Query: 27 HLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVM------ 80
H+T+ C + F L+ +++ P ++ +
Sbjct: 54 HVTMALCYTA---TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN 110
Query: 81 FPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDH 140
QL+ + + + L L+ L + C F T G
Sbjct: 111 LRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGF-----------TTDGLLS 158
Query: 141 LVDLVPSSTSFQNLTNLVVSCCKGLKIVLTF--SIAKTLVRLEYMEIESCDRITEIVLVD 198
+V + L++ + + +A+ LE + + +
Sbjct: 159 IVTHCR------KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE----FAKIS 208
Query: 199 DVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSS 258
+ R L +K+ + E L A L++ M
Sbjct: 209 PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268
Query: 259 TPKL 262
KL
Sbjct: 269 PRKL 272
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 24/224 (10%)
Query: 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQ 85
+H + + + + + SF+ E ++ + + ++ E + + Q
Sbjct: 59 LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118
Query: 86 YLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV 145
L+ +LE + + +L L +SGC +E L
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-----------FSEFALQTL---- 163
Query: 146 PSSTSFQNLTNLVVSCCKGLK-IVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKD 204
+S L L +S C + ++A + + + + +
Sbjct: 164 --LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-----LQKSDLST 216
Query: 205 EVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248
V L L L + L + C + L+ L L C
Sbjct: 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYD 259
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 36/213 (16%)
Query: 13 SQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQE 72
S + + L +L+L + ++ ++ L R+ + C E +
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNT--LAKNSNLVRLNLSGCSGFSEFALQTLLS 165
Query: 73 ERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNI 132
+L L + +FT ++ +L +SG K
Sbjct: 166 -------SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN---------- 208
Query: 133 LTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRIT 192
L + LV NL +L +S LK + L L+++ + C I
Sbjct: 209 LQKSDLSTLV------RRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDII 261
Query: 193 EIVLVDDVAAKDEVITFRELKELKLLNLESLTS 225
L + E+ LK L + +
Sbjct: 262 PETL----------LELGEIPTLKTLQVFGIVP 284
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 108 FPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCK---- 163
FP ++ + + G P F + G + S+S+ L + +
Sbjct: 65 FPKVRSVELKGKPHF----ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120
Query: 164 GLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKL--LNLE 221
L+ IAK+ + + + SC+ + L +AA R LKEL L +++
Sbjct: 121 CLE-----LIAKSFKNFKVLVLSSCEGFSTDGLA-AIAAT-----CRNLKELDLRESDVD 169
Query: 222 SLTSFCSGNCAFKFPSLERLVLDDCPSM 249
++ + + SL L + S
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASE 197
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 37/244 (15%), Positives = 64/244 (26%), Gaps = 27/244 (11%)
Query: 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQ 83
N L L SC ++I ++ L+ +++ E V +
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY-----TS 185
Query: 84 LQYLKMFNLENFTSFCTSNLGIL--EFPSLKELWISGCPK---FMERYNRTTNI--LTER 136
L L + L + SF S L L P+LK L ++ R + L
Sbjct: 186 LVSLNISCLASEVSF--SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243
Query: 137 GCDHLVDLVPSS---TSFQNLTNLVV-SCCKGLKIVLTFSIAKTLVRLEYMEIESCDRIT 192
G V S + L S ++ RL + +
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT--- 300
Query: 193 EIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIF 252
V + +L+ L +L+ A L L + +
Sbjct: 301 ----VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV--LASTCKDLRELRVFPSEPFVME 354
Query: 253 SEGN 256
Sbjct: 355 PNVA 358
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 19/263 (7%)
Query: 19 SCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNN 78
S I L + +L L S L+ L L + NQ +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 79 VMFPQLQYLKMFNLEN--FTSFCTSNLGILEFPSLKELWISGCP---KFMERYNRTTNIL 133
F +L LK + + C L L+ +L ++ + + + N
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 134 TERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDR--- 190
+ L D+ + + N + K L + + I+ D+
Sbjct: 202 RNMVLEIL-DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260
Query: 191 -------ITEIVLVDDVAAKDEVITFRELKELKLLNLE--SLTSFCSGNCAFKFPSLERL 241
+ + L F LK+LK+LNL + + + +L+ L
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVL 319
Query: 242 VLDDCPSMKIFSEGNSSTPKLHE 264
L +++S PK+
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAY 342
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.83 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.82 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.82 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.81 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.79 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.78 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.78 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.77 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.77 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.77 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.77 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.77 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.77 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.76 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.76 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.74 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.74 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.74 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.73 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.73 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.72 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.72 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.72 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.72 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.71 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.71 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.71 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.71 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.71 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.7 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.69 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.69 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.69 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.69 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.68 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.68 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.68 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.68 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.68 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.67 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.67 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.66 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.66 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.66 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.66 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.66 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.65 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.65 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.65 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.65 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.65 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.65 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.64 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.64 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.64 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.64 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.63 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.63 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.63 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.62 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.62 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.58 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.58 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.58 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.58 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.57 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.57 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.54 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.54 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.54 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.53 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.52 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.52 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.51 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.47 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.46 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.45 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.45 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.45 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.43 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.4 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.38 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.37 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.37 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.37 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.36 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.36 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.35 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.35 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.34 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.34 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.33 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.33 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.32 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.32 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.3 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.26 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.23 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.21 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.2 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.14 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.13 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.09 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.08 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.07 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.06 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.04 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.02 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.02 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.98 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.92 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.92 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.9 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.89 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.88 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.87 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.82 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.7 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.69 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.67 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.67 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.62 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.56 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.52 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.44 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.38 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.27 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.26 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.23 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.18 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.17 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.17 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.02 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.01 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.82 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.59 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.45 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.43 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.15 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.0 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.86 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.64 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.2 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 92.24 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=169.79 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=137.7
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.+++++|++++ ++++.+ |.. ++.+++|++|+++++. +. .++ ..+..+++|++|+++++ .+..+|..
T Consensus 80 ~~~l~~L~L~~-n~l~~l-p~~-l~~l~~L~~L~L~~n~-l~--~lp-------~~~~~l~~L~~L~Ls~n-~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQF-PDQ-AFRLSHLQHMTIDAAG-LM--ELP-------DTMQQFAGLETLTLARN-PLRALPAS 145 (328)
T ss_dssp STTCCEEEEES-SCCSSC-CSC-GGGGTTCSEEEEESSC-CC--CCC-------SCGGGGTTCSEEEEESC-CCCCCCGG
T ss_pred ccceeEEEccC-CCchhc-Chh-hhhCCCCCEEECCCCC-cc--chh-------HHHhccCCCCEEECCCC-ccccCcHH
Confidence 47889999998 667764 655 6679999999998774 33 222 33447889999999887 45677665
Q ss_pred CccccCCCCccEEEEcCCc------hhhh---------hccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcc
Q 020667 102 NLGILEFPSLKELWISGCP------KFME---------RYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp------~~~~---------~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 166 (323)
. ..+++|++|++++|. ..+. .+++|+.| .+.+| .+..+|..+..+++|++|++++|. ++
T Consensus 146 l---~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L-~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~ 219 (328)
T 4fcg_A 146 I---ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL-RLEWT-GIRSLPASIANLQNLKSLKIRNSP-LS 219 (328)
T ss_dssp G---GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE-EEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CC
T ss_pred H---hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE-ECcCC-CcCcchHhhcCCCCCCEEEccCCC-CC
Confidence 3 478899999998873 2111 13444444 33433 333555566666677777776664 33
Q ss_pred eecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
.+ +..+..+++|++|++++|...+.++ ..+..+++|+.|++++|..+..++.. +..+++|++|++++|
T Consensus 220 ~l--~~~l~~l~~L~~L~Ls~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 220 AL--GPAIHHLPKLEELDLRGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGC 287 (328)
T ss_dssp CC--CGGGGGCTTCCEEECTTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTC
T ss_pred cC--chhhccCCCCCEEECcCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCC
Confidence 33 3345666667777777666665555 33455666777777766666655543 255666777777776
Q ss_pred CCCcccCCCCCCCCCcceeEc
Q 020667 247 PSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 247 ~~l~~lp~~~~~~~~L~~L~l 267 (323)
+.++.+|.++..+++|+.+++
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEEC
T ss_pred CchhhccHHHhhccCceEEeC
Confidence 666667766666666666666
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=182.37 Aligned_cols=152 Identities=11% Similarity=-0.005 Sum_probs=77.0
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++|++|++++ +.+++.+|.. ++.+++|++|++++|..-. ..+..+..+++|++|+++++...+.++..
T Consensus 393 ~~~L~~L~L~~-n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 393 KNTLQELYLQN-NGFTGKIPPT-LSNCSELVSLHLSFNYLSG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp TCCCCEEECCS-SEEEEECCGG-GGGCTTCCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cCCccEEECCC-CccccccCHH-HhcCCCCCEEECcCCcccC---------cccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 66777777777 4556555655 5677777777777653111 11222234555555555555333333333
Q ss_pred CccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 102 NLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
. ..+++|++|++++| |..+..+++|+.| ++.+|...+.+|.+++.+++|++|++++|...+.+ |..++
T Consensus 462 ~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~ 535 (768)
T 3rgz_A 462 L---MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELG 535 (768)
T ss_dssp G---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGG
T ss_pred H---cCCCCceEEEecCCcccCcCCHHHhcCCCCCEE-EccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHc
Confidence 2 24555555555555 3333444444444 44444444445555555555555555555433333 33445
Q ss_pred ccccccEEEEccCcc
Q 020667 176 TLVRLEYMEIESCDR 190 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~ 190 (323)
.+++|+.|++++|..
T Consensus 536 ~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLF 550 (768)
T ss_dssp GCTTCCEEECCSSEE
T ss_pred CCCCCCEEECCCCcc
Confidence 555555555555443
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=180.85 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=179.0
Q ss_pred cccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 13 SQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 13 ~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
..|..+. .+++|++|++++ +.+++.+|.. ++.+++|++|++++|.... . .+..+..+++|++|+++++
T Consensus 409 ~~p~~l~-~l~~L~~L~Ls~-N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~--~-------~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 409 KIPPTLS-NCSELVSLHLSF-NYLSGTIPSS-LGSLSKLRDLKLWLNMLEG--E-------IPQELMYVKTLETLILDFN 476 (768)
T ss_dssp ECCGGGG-GCTTCCEEECCS-SEEESCCCGG-GGGCTTCCEEECCSSCCCS--C-------CCGGGGGCTTCCEEECCSS
T ss_pred ccCHHHh-cCCCCCEEECcC-CcccCcccHH-HhcCCCCCEEECCCCcccC--c-------CCHHHcCCCCceEEEecCC
Confidence 4566777 899999999998 5677766766 6889999999999886443 2 2333447889999999988
Q ss_pred cccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcc
Q 020667 93 ENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 93 ~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 166 (323)
...+.++... ..+++|++|++++| |..++.+++|+.| ++.+|...+.+|..+..+++|+.|++++|...+
T Consensus 477 ~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 477 DLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL-KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCCSCCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE-ECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cccCcCCHHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEE-ECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 5544555553 47899999999988 5667777888888 688888877888888889999999998886433
Q ss_pred eecc--------------------------------------------------------------------hhHHhccc
Q 020667 167 IVLT--------------------------------------------------------------------FSIAKTLV 178 (323)
Q Consensus 167 ~l~~--------------------------------------------------------------------~~~l~~l~ 178 (323)
.++. +..+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 3311 01123356
Q ss_pred cccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 179 RLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 179 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
+|+.|++++|...+.+| ..++.+++|+.|+++++ +++ .+|.. +..+++|++|++++|...+.+|..+.
T Consensus 633 ~L~~LdLs~N~l~g~ip--------~~l~~l~~L~~L~Ls~N-~l~g~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIP--------KEIGSMPYLFILNLGHN-DISGSIPDE--VGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCCEEECCSSCCBSCCC--------GGGGGCTTCCEEECCSS-CCCSCCCGG--GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred cccEEECcCCcccccCC--------HHHhccccCCEEeCcCC-ccCCCCChH--HhCCCCCCEEECCCCcccCcCChHHh
Confidence 78888888877666666 55678888999999886 455 55543 46788999999988877778898888
Q ss_pred CCCCcceeEccCccccccccchhhh
Q 020667 258 STPKLHEVQWPGEARWAWKDDLNTT 282 (323)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~~~~l~~~ 282 (323)
.+++|++|++ +++.+.|.+|..
T Consensus 702 ~l~~L~~L~l---s~N~l~g~iP~~ 723 (768)
T 3rgz_A 702 ALTMLTEIDL---SNNNLSGPIPEM 723 (768)
T ss_dssp GCCCCSEEEC---CSSEEEEECCSS
T ss_pred CCCCCCEEEC---cCCcccccCCCc
Confidence 8899999999 777888877754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=158.58 Aligned_cols=209 Identities=17% Similarity=0.243 Sum_probs=170.4
Q ss_pred cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----ch
Q 020667 47 SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PK 121 (323)
Q Consensus 47 ~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~ 121 (323)
..++++.|+++++. +. . .+..+..+++|++|+++++ .+..+|... ..+++|++|++++| |.
T Consensus 79 ~~~~l~~L~L~~n~-l~--~-------lp~~l~~l~~L~~L~L~~n-~l~~lp~~~---~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP--Q-------FPDQAFRLSHLQHMTIDAA-GLMELPDTM---QQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp TSTTCCEEEEESSC-CS--S-------CCSCGGGGTTCSEEEEESS-CCCCCCSCG---GGGTTCSEEEEESCCCCCCCG
T ss_pred cccceeEEEccCCC-ch--h-------cChhhhhCCCCCEEECCCC-CccchhHHH---hccCCCCEEECCCCccccCcH
Confidence 46899999999864 33 2 3334458999999999988 466777653 48999999999998 66
Q ss_pred hhhhccCCcceeeecCCCCccccCCCCCC---------CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccc
Q 020667 122 FMERYNRTTNILTERGCDHLVDLVPSSTS---------FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRIT 192 (323)
Q Consensus 122 ~~~~l~~L~~L~~i~~~~~l~~l~~~~~~---------l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~ 192 (323)
.+..+++|+.| .+.+|...+.+|..+.. +++|++|++++|. ++.+ +..+..+++|++|++++|. +.
T Consensus 145 ~l~~l~~L~~L-~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l--p~~l~~l~~L~~L~L~~N~-l~ 219 (328)
T 4fcg_A 145 SIASLNRLREL-SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL--PASIANLQNLKSLKIRNSP-LS 219 (328)
T ss_dssp GGGGCTTCCEE-EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC--CGGGGGCTTCCEEEEESSC-CC
T ss_pred HHhcCcCCCEE-ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc--hHhhcCCCCCCEEEccCCC-CC
Confidence 67778888888 78889999999887654 9999999999985 5555 5668899999999999986 55
Q ss_pred eeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccc
Q 020667 193 EIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEAR 272 (323)
Q Consensus 193 ~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~ 272 (323)
.++ ..+..+++|++|++++|.....++.. +..+++|++|++++|+.++.+|..+..+++|++|++ ..
T Consensus 220 ~l~--------~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L---~~ 286 (328)
T 4fcg_A 220 ALG--------PAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL---RG 286 (328)
T ss_dssp CCC--------GGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC---TT
T ss_pred cCc--------hhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC---CC
Confidence 565 34578999999999999877777654 367999999999999999999999999999999999 56
Q ss_pred cccccchhhhceeee
Q 020667 273 WAWKDDLNTTIQKVI 287 (323)
Q Consensus 273 ~~~~~~l~~~l~~l~ 287 (323)
+.+.+.+|..+..+.
T Consensus 287 n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLP 301 (328)
T ss_dssp CTTCCCCCGGGGGSC
T ss_pred CCchhhccHHHhhcc
Confidence 667777787766544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=160.11 Aligned_cols=228 Identities=16% Similarity=0.053 Sum_probs=165.7
Q ss_pred CcccEEeeecccccce--eccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 23 QNLMHLTLRSCMNLRY--LFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~--~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.++++|++++ +++++ .+|.. ++.+++|++|+++++..+. +..+..+..+++|++|+++++...+.++.
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~--------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSS-LANLPYLNFLYIGGINNLV--------GPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGG-GGGCTTCSEEEEEEETTEE--------SCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCC-CCccCCcccChh-HhCCCCCCeeeCCCCCccc--------ccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 6789999998 56776 55765 7889999999999644443 12333445889999999988754335555
Q ss_pred cCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCC-CCCEEEeecCcCcceecchhH
Q 020667 101 SNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQ-NLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~ 173 (323)
.. ..+++|++|++++| |..+..+++|++| .+.++...+.+|..+..++ +|++|++++|.....+ +..
T Consensus 120 ~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~ 193 (313)
T 1ogq_A 120 FL---SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPT 193 (313)
T ss_dssp GG---GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE-ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--CGG
T ss_pred HH---hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE-ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC--ChH
Confidence 43 47899999999888 4556667777777 5777766667888888887 8999999988643343 455
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..++ |+.|++++|...+.++ ..+..+++|+.|+++++ .++..... ...+++|++|++++|...+.+|
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDAS--------VLFGSDKNTQKIHLAKN-SLAFDLGK--VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCG--------GGCCTTSCCSEEECCSS-EECCBGGG--CCCCTTCCEEECCSSCCEECCC
T ss_pred HhCCc-ccEEECcCCcccCcCC--------HHHhcCCCCCEEECCCC-ceeeecCc--ccccCCCCEEECcCCcccCcCC
Confidence 66776 9999999876433333 34467889999999986 45543332 3567899999999877666888
Q ss_pred CCCCCCCCcceeEccCccccccccchhh
Q 020667 254 EGNSSTPKLHEVQWPGEARWAWKDDLNT 281 (323)
Q Consensus 254 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 281 (323)
..+..+++|++|++ ..+.+.+.+|.
T Consensus 262 ~~l~~l~~L~~L~L---s~N~l~~~ip~ 286 (313)
T 1ogq_A 262 QGLTQLKFLHSLNV---SFNNLCGEIPQ 286 (313)
T ss_dssp GGGGGCTTCCEEEC---CSSEEEEECCC
T ss_pred hHHhcCcCCCEEEC---cCCcccccCCC
Confidence 88888899999999 66666665554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=160.55 Aligned_cols=226 Identities=12% Similarity=0.071 Sum_probs=172.3
Q ss_pred cccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 13 SQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 13 ~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
..|..+. .+++|++|++++++++.+.+|.. ++.+++|++|+++++..-. .+ +..+..+++|++|+++++
T Consensus 67 ~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~--~~-------p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 67 PIPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG--AI-------PDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE--EC-------CGGGGGCTTCCEEECCSS
T ss_pred ccChhHh-CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCC--cC-------CHHHhCCCCCCEEeCCCC
Confidence 3567788 99999999999767888777876 7899999999999875432 22 233448999999999998
Q ss_pred cccccccccCccccCCCCccEEEEcCC------chhhhhcc-CCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCc
Q 020667 93 ENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYN-RTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGL 165 (323)
Q Consensus 93 ~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~-~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 165 (323)
.....++... ..+++|++|++++| |..+..++ .|+.| .+.++...+.+|..+..++ |++|++++|. +
T Consensus 136 ~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L-~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l 209 (313)
T 1ogq_A 136 ALSGTLPPSI---SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM-TISRNRLTGKIPPTFANLN-LAFVDLSRNM-L 209 (313)
T ss_dssp EEESCCCGGG---GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE-ECCSSEEEEECCGGGGGCC-CSEEECCSSE-E
T ss_pred ccCCcCChHH---hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE-ECcCCeeeccCChHHhCCc-ccEEECcCCc-c
Confidence 5443555553 48999999999998 44455555 67777 5677666667777777776 9999999986 4
Q ss_pred ceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCccccCCcccEEeec
Q 020667 166 KIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCAFKFPSLERLVLD 244 (323)
Q Consensus 166 ~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~ 244 (323)
+.. .+..+..+++|+.|++++|.....++ .+..+++|++|+++++ .++ .++. .+..+++|++|+++
T Consensus 210 ~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~L~~L~Ls~N-~l~~~~p~--~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 210 EGD-ASVLFGSDKNTQKIHLAKNSLAFDLG---------KVGLSKNLNGLDLRNN-RIYGTLPQ--GLTQLKFLHSLNVS 276 (313)
T ss_dssp EEC-CGGGCCTTSCCSEEECCSSEECCBGG---------GCCCCTTCCEEECCSS-CCEECCCG--GGGGCTTCCEEECC
T ss_pred cCc-CCHHHhcCCCCCEEECCCCceeeecC---------cccccCCCCEEECcCC-cccCcCCh--HHhcCcCCCEEECc
Confidence 433 25667889999999999987443333 2357899999999997 566 4443 34789999999999
Q ss_pred CCCCCcccCCCCCCCCCcceeEccC
Q 020667 245 DCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 245 ~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
+|+..+.+|.. ..+++|+.+++.+
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred CCcccccCCCC-ccccccChHHhcC
Confidence 98777789886 6888999999944
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-18 Score=157.44 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=25.1
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
..+. .+++|++|+|++ +.++++.|.. ++++++|++|+++++
T Consensus 50 ~~~~-~l~~L~~L~L~~-n~i~~~~~~~-~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 50 DEFA-SFPHLEELELNE-NIVSAVEPGA-FNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTT-TCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECCSS
T ss_pred hHcc-CCCCCCEEECCC-CccCEeChhh-hhCCccCCEEECCCC
Confidence 3455 667777777766 4566654443 566677777776643
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-18 Score=156.17 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=25.8
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP 60 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~ 60 (323)
|..+. .+++|++|+++++ .+.+.++...+..+++|++|+++++.
T Consensus 47 ~~~~~-~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 47 ETSFS-RLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TTTTS-SCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCT
T ss_pred hhHhc-cCccccEEECcCC-cccceECcccccccccCCEEeCCCCc
Confidence 44556 6777777777763 33322333335667777777776553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=158.45 Aligned_cols=236 Identities=21% Similarity=0.229 Sum_probs=143.8
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCC-------------CceEEeeccc--cccCCCc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPV-------------LKELIVMDNQ--EERKNNN 78 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~-------------l~~l~~~~~~--~~~~~~~ 78 (323)
.|..+. .+++|++|+|++ +.++++ |...+..+++|++|+++++.. ++.+.+..+. +..+..+
T Consensus 72 ~~~~~~-~l~~L~~L~L~~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 72 EPGAFN-NLFNLRTLGLRS-NRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CTTTTT-TCTTCCEEECCS-SCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred Chhhhh-CCccCCEEECCC-CcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence 366677 899999999998 678775 555467899999999986642 2222222221 1112223
Q ss_pred cccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCCCCCCCC
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQ 152 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~ 152 (323)
..+++|++|+++++ .+..++... ...+++|+.|++++|. ..+..+++|+.| .+.+|..++.+++......
T Consensus 149 ~~l~~L~~L~l~~n-~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 149 SGLNSLEQLTLEKC-NLTSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL-EISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp TTCTTCCEEEEESC-CCSSCCHHH--HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE-EEECCTTCCEECTTTTTTC
T ss_pred cCCCCCCEEECCCC-cCcccChhH--hcccCCCcEEeCCCCcCcEeChhhcccCccccee-eCCCCccccccCcccccCc
Confidence 34445555555444 233333211 1245555555555541 122334444554 4566666666666655566
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+|++|++++|. ++.++ ...+..+++|+.|++++|. +..++ ...+..+++|+.|++.++ +++.+.... +
T Consensus 225 ~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~ 292 (477)
T 2id5_A 225 NLTSLSITHCN-LTAVP-YLAVRHLVYLRFLNLSYNP-ISTIE-------GSMLHELLRLQEIQLVGG-QLAVVEPYA-F 292 (477)
T ss_dssp CCSEEEEESSC-CCSCC-HHHHTTCTTCCEEECCSSC-CCEEC-------TTSCTTCTTCCEEECCSS-CCSEECTTT-B
T ss_pred cccEEECcCCc-ccccC-HHHhcCccccCeeECCCCc-CCccC-------hhhccccccCCEEECCCC-ccceECHHH-h
Confidence 77777777764 44442 2456778888888888765 44544 123457788888888885 677765543 4
Q ss_pred ccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccC
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPG 269 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~ 269 (323)
..+++|++|++++| .++.+|.. +..+++|++|++.+
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 67888999999886 56666654 45778899998844
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=154.10 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=143.4
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC---------------CCceEEeeccc-ccc-CCC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP---------------VLKELIVMDNQ-EER-KNN 77 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~---------------~l~~l~~~~~~-~~~-~~~ 77 (323)
|..+. .+++|++|++++ +.++++.|.. ++.+++|++|++++|. +++.+.+..+. ... +..
T Consensus 72 ~~~~~-~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 72 NNTFR-GLSSLIILKLDY-NQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp TTTTT-TCTTCCEEECTT-CTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred ccccc-ccccCCEEeCCC-CccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 44567 899999999998 5677765655 7889999999988653 23333333322 111 222
Q ss_pred -ccccCCcCEEecccccccccccccCc--------------------------------cccCCCCccEEEEcCCc----
Q 020667 78 -NVMFPQLQYLKMFNLENFTSFCTSNL--------------------------------GILEFPSLKELWISGCP---- 120 (323)
Q Consensus 78 -~~~l~~L~~L~l~~~~~l~~~~~~~~--------------------------------~~~~l~~L~~L~l~~cp---- 120 (323)
+..+++|++|+++++. +........ ....+++|++|++++|.
T Consensus 149 ~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred ccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 4566677777776653 222211100 00123566666666662
Q ss_pred --hhhhhc---------------------------------------cCCcceeeecCCCCccccCCCCCCCCCCCEEEe
Q 020667 121 --KFMERY---------------------------------------NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVV 159 (323)
Q Consensus 121 --~~~~~l---------------------------------------~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l 159 (323)
..+... ++++.| ++.++...+..|..+..+++|++|++
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC-DLSKSKIFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEE-ECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEE-EecCccccccchhhcccCCCCCEEEC
Confidence 111111 123333 23333333334555667777888887
Q ss_pred ecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCccc
Q 020667 160 SCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLE 239 (323)
Q Consensus 160 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~ 239 (323)
++|. ++.+. +..+.++++|++|++++|. ++.++ ...+..+++|++|+++++ .++.+.... +..+++|+
T Consensus 307 s~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~ 374 (455)
T 3v47_A 307 AQNE-INKID-DNAFWGLTHLLKLNLSQNF-LGSID-------SRMFENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLK 374 (455)
T ss_dssp TTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEEC-------GGGGTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCC
T ss_pred CCCc-ccccC-hhHhcCcccCCEEECCCCc-cCCcC-------hhHhcCcccCCEEECCCC-cccccChhh-cccccccc
Confidence 7775 34332 3456677778888887764 44443 133456788888888886 566664432 45678888
Q ss_pred EEeecCCCCCcccCCC-CCCCCCcceeEccCccccccccchh
Q 020667 240 RLVLDDCPSMKIFSEG-NSSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 240 ~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
+|++++| .++.+|.. +..+++|++|++ ..+.+.++.|
T Consensus 375 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l---~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTN-QLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 412 (455)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEEC---CSSCBCCCTT
T ss_pred EEECCCC-ccccCCHhHhccCCcccEEEc---cCCCcccCCC
Confidence 8888774 45566654 357788888888 5555555544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-18 Score=162.56 Aligned_cols=234 Identities=15% Similarity=0.061 Sum_probs=118.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCC-------------CceEEeeccc--cccCC-Ccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPV-------------LKELIVMDNQ--EERKN-NNVMF 81 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~-------------l~~l~~~~~~--~~~~~-~~~~l 81 (323)
+. .+++|++|++++ +.++.+ |.+ ++.+++|++|+++++.. ++.+.+..+. +..+. .+..+
T Consensus 274 ~~-~l~~L~~L~l~~-n~l~~l-p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FH-CFSGLQELDLTA-THLSEL-PSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TT-TCTTCSEEECTT-SCCSCC-CSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hc-cccCCCEEeccC-CccCCC-Chh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 55 677777777776 456653 544 56677777777765532 2222222111 11111 13345
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCC-CCCCCCC
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNL 154 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L 154 (323)
++|++|+++++. +............+++|++|++++| |..+..+++|+.| ++.++......++. +..+++|
T Consensus 350 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 350 ENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL-DLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE-ECTTCCEECCTTCCTTTTCTTC
T ss_pred CcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE-ECCCCcCCCcccchhhhCcccC
Confidence 555555555542 2222100000234555666665555 2233334444444 34444333322222 4556666
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcccc
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFK 234 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 234 (323)
++|++++|...... +..+..+++|++|++++|...+..+. ....+..+++|+.|++++| +++.++... +..
T Consensus 428 ~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~ 498 (606)
T 3t6q_A 428 KVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQHA-FTS 498 (606)
T ss_dssp CEEECTTCCCBTTC--TTTTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTTT-TTT
T ss_pred CEEECCCCccCCcC--HHHHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCC-ccCccChhh-hcc
Confidence 66666665422211 33455666666666666653221110 0122356677777777775 555554332 355
Q ss_pred CCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 235 FPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 235 l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++|++|++++|...+..|..+..+++| .|++
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 6777777777765555556666667777 7777
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=147.80 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=162.9
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEE-eeccccccCCCccccCCcCEEecccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELI-VMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.++|++|++++ ++++.+ |..+++.+++|++|+++++. +..+. .+... ..+++|++|+++++ .+..++.
T Consensus 27 ~~~l~~L~L~~-n~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-------~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 27 PSSATRLELES-NKLQSL-PHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-------FGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp CTTCCEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-------HSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCCEEECCC-CccCcc-CHhHhhccccCCEEECCCCc-cCcccCccccc-------ccccccCEEECCCC-ccccChh
Confidence 46899999998 578875 66657899999999999874 33221 11222 26889999999988 4666666
Q ss_pred cCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhH
Q 020667 101 SNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
.. ..+++|++|++++|. ..+..+++|+.| .+.++......+..+..+++|++|++++|...... .+..
T Consensus 96 ~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~ 170 (306)
T 2z66_A 96 NF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDI 170 (306)
T ss_dssp EE---ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE-ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE-ECSC
T ss_pred hc---CCCCCCCEEECCCCcccccccchhhhhccCCCEE-ECCCCcCCccchhhcccCcCCCEEECCCCcccccc-chhH
Confidence 53 479999999999982 244556677777 56666655555666788999999999988633311 1456
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..+++|++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++|...+..|
T Consensus 171 ~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSS
T ss_pred HhhCcCCCEEECCCCC-cCCcC-------HHHhcCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCH
Confidence 7889999999999985 55553 134467899999999996 677765533 4678999999999987666677
Q ss_pred CCCCCC-CCcceeEccC
Q 020667 254 EGNSST-PKLHEVQWPG 269 (323)
Q Consensus 254 ~~~~~~-~~L~~L~l~~ 269 (323)
..+..+ ++|++|++.+
T Consensus 241 ~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp SSCCCCCTTCCEEECTT
T ss_pred HHHHhhhccCCEEEccC
Confidence 777777 4999999944
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=153.81 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=167.4
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|+|++ ++++++.|.. +..+++|++|+++++. +.. +. +..+..+++|++|+++++ .+..++...
T Consensus 75 ~~l~~L~L~~-n~i~~~~~~~-~~~l~~L~~L~Ls~n~-i~~--~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQADT-FRHLHHLEVLQLGRNS-IRQ--IE------VGAFNGLASLNTLELFDN-WLTVIPSGA 142 (452)
T ss_dssp TTCSEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCE--EC------TTTTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred CCccEEECcC-CcCceECHHH-cCCCCCCCEEECCCCc-cCC--cC------hhhccCcccCCEEECCCC-cCCccChhh
Confidence 6899999998 6888875554 7899999999999874 442 22 122337899999999987 577776653
Q ss_pred ccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 103 LGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
+..+++|++|++++|. ..+..+++|+.| ++.+|..++.++. .+..+++|++|++++|. ++.++ .+.
T Consensus 143 --~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~ 215 (452)
T 3zyi_A 143 --FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL-DLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP---NLT 215 (452)
T ss_dssp --SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC---CCT
T ss_pred --hcccCCCCEEECCCCCcceeCHhHHhcCCcccEE-eCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc---ccc
Confidence 2578999999999982 345567777777 6888888888876 46789999999999985 55552 367
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG 255 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 255 (323)
.+++|+.|++++|. +..++ ...+..+++|+.|++.++ .++.+.... +..+++|++|++++| .++.+|..
T Consensus 216 ~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~ 284 (452)
T 3zyi_A 216 PLVGLEELEMSGNH-FPEIR-------PGSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN-NLSSLPHD 284 (452)
T ss_dssp TCTTCCEEECTTSC-CSEEC-------GGGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ccccccEEECcCCc-CcccC-------cccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC-cCCccChH
Confidence 88999999999986 44443 144578899999999996 788776543 567899999999886 56677754
Q ss_pred -CCCCCCcceeEccC
Q 020667 256 -NSSTPKLHEVQWPG 269 (323)
Q Consensus 256 -~~~~~~L~~L~l~~ 269 (323)
+..+++|++|++.+
T Consensus 285 ~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 285 LFTPLRYLVELHLHH 299 (452)
T ss_dssp SSTTCTTCCEEECCS
T ss_pred HhccccCCCEEEccC
Confidence 45789999999955
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-18 Score=163.29 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=144.5
Q ss_pred ccceeccchhHhcCCCccEEEEecCCCCceEEeecc---------ccccCCCcc--ccCCcCEEecccccccccccccCc
Q 020667 35 NLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDN---------QEERKNNNV--MFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 35 ~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~---------~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
++++ +|.. ++++++|++|+++++. +....+... .+..|..+. .+++|++|++++|...+.+|...
T Consensus 194 ~l~~-ip~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l- 269 (636)
T 4eco_A 194 NITF-VSKA-VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269 (636)
T ss_dssp EEEE-ECGG-GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred CCcc-CCHH-HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence 4556 4665 7889999999999875 431000000 011667777 89999999999987677777663
Q ss_pred cccCCCCccEEEEcCCc--------hhhhhc------cCCcceeeecCCCCccccCC--CCCCCCCCCEEEeecCcCcce
Q 020667 104 GILEFPSLKELWISGCP--------KFMERY------NRTTNILTERGCDHLVDLVP--SSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp--------~~~~~l------~~L~~L~~i~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~ 167 (323)
..+++|++|++++|. ..++.+ ++|+.| .+.+|... .+|. .+..+++|++|++++|...+.
T Consensus 270 --~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L-~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 270 --KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII-YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp --TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE-ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred --hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE-ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 488999999999885 223333 677777 56666444 7887 788899999999998864436
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccc-cCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRE-LKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~-L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
+ + .+..+++|+.|++++|. +..+| ..+..+++ |++|+++++ .++.++.......+++|++|++++|
T Consensus 346 i--p-~~~~l~~L~~L~L~~N~-l~~lp--------~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 346 L--P-AFGSEIKLASLNLAYNQ-ITEIP--------ANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp C--C-CCEEEEEESEEECCSSE-EEECC--------TTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSS
T ss_pred h--h-hhCCCCCCCEEECCCCc-ccccc--------HhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCC
Confidence 5 3 56788889999998875 44665 34567777 888888885 4666665332223446777777776
Q ss_pred CCCcccCCCCC-------CCCCcceeEccC
Q 020667 247 PSMKIFSEGNS-------STPKLHEVQWPG 269 (323)
Q Consensus 247 ~~l~~lp~~~~-------~~~~L~~L~l~~ 269 (323)
...+.+|..+. .+++|++|++.+
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcC
Confidence 65555665554 556677776633
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=152.64 Aligned_cols=217 Identities=14% Similarity=0.247 Sum_probs=167.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|+|++ ++++++.+.. +..+++|++|+++++. +..+ .... +..+++|++|+++++ .+..++...
T Consensus 64 ~~l~~L~L~~-n~i~~~~~~~-~~~l~~L~~L~Ls~n~-i~~i-~~~~-------~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIKVNS-FKHLRHLEILQLSRNH-IRTI-EIGA-------FNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCS-CCCCEECTTT-TSSCSSCCEEECCSSC-CCEE-CGGG-------GTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCcEEEccC-CcCCeeCHHH-hhCCCCCCEEECCCCc-CCcc-Chhh-------ccCCccCCEEECCCC-cCCeeCHhH
Confidence 7899999998 6788875544 7899999999999875 4421 1122 237899999999987 677776643
Q ss_pred ccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 103 LGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
+..+++|++|++++|. ..+..+++|+.| ++.++..+..++. .+..+++|++|++++|. ++.++ .+.
T Consensus 132 --~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~ 204 (440)
T 3zyj_A 132 --FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-DLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP---NLT 204 (440)
T ss_dssp --SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC---CCT
T ss_pred --hhccccCceeeCCCCcccccCHHHhhhCcccCEe-CCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc---ccC
Confidence 3578999999999982 345567777777 6888888888866 47789999999999984 66553 367
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG 255 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 255 (323)
.+++|+.|++++|. +..++ ...+..+++|+.|++.++ +++.++... +..+++|++|++++| .++.+|..
T Consensus 205 ~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 205 PLIKLDELDLSGNH-LSAIR-------PGSFQGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp TCSSCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCcccCEEECCCCc-cCccC-------hhhhccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCC-CCCccChh
Confidence 88999999999985 55554 244568899999999996 788887654 567899999999886 56667654
Q ss_pred -CCCCCCcceeEccC
Q 020667 256 -NSSTPKLHEVQWPG 269 (323)
Q Consensus 256 -~~~~~~L~~L~l~~ 269 (323)
+..+++|+.|++.+
T Consensus 274 ~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 274 LFTPLHHLERIHLHH 288 (440)
T ss_dssp TTSSCTTCCEEECCS
T ss_pred HhccccCCCEEEcCC
Confidence 46789999999955
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=149.86 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..+++|++|++++|. +..++ ...+..+++|+.|+++++ +++.++... ..+++|++|++++| .++.+|
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIM-------YHPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHVE 311 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEE-------SGGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS-CCCCCG
T ss_pred HcCCCCccEEECCCCc-CCCcC-------hhHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC-cceecC
Confidence 4455556666655553 22222 123345566666666664 455554432 44566666666664 344555
Q ss_pred CCCCCCCCcceeEccC
Q 020667 254 EGNSSTPKLHEVQWPG 269 (323)
Q Consensus 254 ~~~~~~~~L~~L~l~~ 269 (323)
..+..+++|++|++.+
T Consensus 312 ~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDH 327 (390)
T ss_dssp GGHHHHTTCSEEECCS
T ss_pred ccccccCcCCEEECCC
Confidence 5554556666666633
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=158.83 Aligned_cols=238 Identities=17% Similarity=0.118 Sum_probs=167.8
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC--------------CCCceEEeeccc--cc--cC
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC--------------PVLKELIVMDNQ--EE--RK 75 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c--------------~~l~~l~~~~~~--~~--~~ 75 (323)
.|..+. .+++|++|++++ +.++++.|.. +..+++|++|+++++ +.++.+.+..+. +. .+
T Consensus 293 lp~~l~-~l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 293 LPSGLV-GLSTLKKLVLSA-NKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CCSSCC-SCTTCCEEECTT-CCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CChhhc-ccccCCEEECcc-CCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 455666 788888888887 4566654433 677788888877654 234444443332 11 14
Q ss_pred CCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCC
Q 020667 76 NNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSS 148 (323)
Q Consensus 76 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~ 148 (323)
..+..+++|++|+++++. +..++... +..+++|++|++++|. ..+..+++|+.| .+.+|......|..+
T Consensus 370 ~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNE-PLSLKTEA--FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDISSEQLF 445 (606)
T ss_dssp TTTTTCTTCCEEECCSCS-CEEECTTT--TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE-ECTTCCCBTTCTTTT
T ss_pred hhcccCCCCCEEECCCCc-CCcCCHHH--hcCCccCCeEECCCCcCCCcccchhhhCcccCCEE-ECCCCccCCcCHHHH
Confidence 456689999999999984 44444332 3578999999999983 235556777777 677776666666778
Q ss_pred CCCCCCCEEEeecCcCcce-ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 149 TSFQNLTNLVVSCCKGLKI-VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~-l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
..+++|++|++++|..... ++.+..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ +++.+.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~ 516 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID-------QHAFTSLKMMNHVDLSHN-RLTSSS 516 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCGGG
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccC-------hhhhccccCCCEEECCCC-ccCcCC
Confidence 8899999999999964332 2223467889999999999986 44443 144568899999999997 676665
Q ss_pred CCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
... +..+++| +|++++|...+..|..+..+++|+.+++.|
T Consensus 517 ~~~-l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 517 IEA-LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp GGG-GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred hhH-hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 433 4678899 999999765555555566789999999944
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=158.40 Aligned_cols=171 Identities=15% Similarity=0.047 Sum_probs=80.6
Q ss_pred ccCCcCEEecccccccccc---cccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccC-CCCCC
Q 020667 80 MFPQLQYLKMFNLENFTSF---CTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLV-PSSTS 150 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~ 150 (323)
.+++|++|+++++. +... +.. ...+++|++|++++| |..+..+++|+.| .+.+|...+..+ ..+..
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYS---DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL-DFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHH---HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE-ECTTSEEESTTTTTTTTT
T ss_pred cCCCCCEEECcCCc-cCCCcchhhh---hccCCcccEeECCCCccccchhhccCCCCCCee-ECCCCccCCccChhhhhc
Confidence 56666666666552 3332 222 235566666666655 2223334444444 334433322222 23445
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccce-eeeccCcccccccccccccCeeecccccccceecCC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITE-IVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG 229 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 229 (323)
+++|++|++++|...... +..+.++++|++|++++|...+. ++ ..+..+++|+.|+++++ .++.++..
T Consensus 423 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLS--------NVFANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp CTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEEC--------SCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred cccCCEEECcCCCCCccc--hhhhcCCCCCCEEECCCCcCCCcchH--------HhhccCCCCCEEECCCC-cCCccChh
Confidence 556666666555422222 33445555666666655543322 22 22344555555555554 44444332
Q ss_pred CccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 230 NCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
. +..+++|++|++++|...+..|..+..+++|++|++
T Consensus 492 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 492 V-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp T-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred h-hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 1 234555555555555433333444555555555555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=157.40 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=152.5
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC-----------CCCceEEeeccc-cc---cCCCccccC
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC-----------PVLKELIVMDNQ-EE---RKNNNVMFP 82 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c-----------~~l~~l~~~~~~-~~---~~~~~~~l~ 82 (323)
+. .+++|++|++++|. ++. +|. + .+++|+.|+++++ +.++.+.+..+. .. .+..+..++
T Consensus 303 l~-~~~~L~~L~l~~n~-l~~-lp~--~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VP-KHFKWQSLSIIRCQ-LKQ-FPT--L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CC-TTCCCSEEEEESCC-CSS-CCC--C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred cc-ccccCCEEEccccc-Ccc-ccc--C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 44 55666677776643 343 353 3 6777777777665 345544444332 11 144455788
Q ss_pred CcCEEecccccccccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCC
Q 020667 83 QLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLT 155 (323)
Q Consensus 83 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~ 155 (323)
+|++|+++++. +..++.. +..+++|++|++++|. ..+..+++|+.| ++.+|......|..+..+++|+
T Consensus 377 ~L~~L~L~~n~-l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 377 SLRHLDLSFNG-AIIMSAN---FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL-DISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp CCCEEECCSCS-EEEECCC---CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE-ECTTSCCEECCTTTTTTCTTCC
T ss_pred cccEeECCCCc-cccchhh---ccCCCCCCeeECCCCccCCccChhhhhccccCCEE-ECcCCCCCccchhhhcCCCCCC
Confidence 88899888874 6666644 3478889999888882 344556677777 5777776666677778888899
Q ss_pred EEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC
Q 020667 156 NLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF 235 (323)
Q Consensus 156 ~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l 235 (323)
+|++++|...... .+..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ +++.+.... +..+
T Consensus 452 ~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l 520 (606)
T 3vq2_A 452 TLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQ-LEQIS-------WGVFDTLHRLQLLNMSHN-NLLFLDSSH-YNQL 520 (606)
T ss_dssp EEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCEEGGG-TTTC
T ss_pred EEECCCCcCCCcc-hHHhhccCCCCCEEECCCCc-CCccC-------hhhhcccccCCEEECCCC-cCCCcCHHH-ccCC
Confidence 9998888533321 14456788889999988885 44443 133467888889998887 566654332 4668
Q ss_pred CcccEEeecCCCCCcccCCCCCCCC-CcceeEccC
Q 020667 236 PSLERLVLDDCPSMKIFSEGNSSTP-KLHEVQWPG 269 (323)
Q Consensus 236 ~~L~~L~l~~c~~l~~lp~~~~~~~-~L~~L~l~~ 269 (323)
++|++|++++|. ++.+|..+..++ +|+++++.+
T Consensus 521 ~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 521 YSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp TTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred CcCCEEECCCCc-CcccCHhHhhhcccCcEEEccC
Confidence 888899998864 668888776666 688888843
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=145.82 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=159.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++ ++++++.|.. +..+++|++|+++++..-. + .. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~-~--~~--------~~~l~~L~~L~Ls~n-~l~~l~- 96 (317)
T 3o53_A 32 SAWNVKELDLSG-NPLSQISAAD-LAPFTKLELLNLSSNVLYE-T--LD--------LESLSTLRTLDLNNN-YVQELL- 96 (317)
T ss_dssp TGGGCSEEECTT-SCCCCCCHHH-HTTCTTCCEEECTTSCCEE-E--EE--------ETTCTTCCEEECCSS-EEEEEE-
T ss_pred cCCCCCEEECcC-CccCcCCHHH-hhCCCcCCEEECCCCcCCc-c--hh--------hhhcCCCCEEECcCC-cccccc-
Confidence 678999999999 6788864444 7899999999999885432 1 11 237899999999988 455544
Q ss_pred cCccccCCCCccEEEEcCCchh---hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 101 SNLGILEFPSLKELWISGCPKF---MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~---~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
..++|++|++++|.-. ...+++|+.| .+.++......+..+..+++|++|++++|. ++.+........+
T Consensus 97 ------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l 168 (317)
T 3o53_A 97 ------VGPSIETLHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168 (317)
T ss_dssp ------ECTTCCEEECCSSCCSEEEECCCSSCEEE-ECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred ------CCCCcCEEECCCCccCCcCccccCCCCEE-ECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhcc
Confidence 3578999999988311 1224566666 455554433334467788999999999985 5554333344578
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|++|++++|. +..++. ...+++|++|+++++ +++.++.. +..+++|++|++++| .++.+|..+.
T Consensus 169 ~~L~~L~L~~N~-l~~~~~---------~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~ 234 (317)
T 3o53_A 169 DTLEHLNLQYNF-IYDVKG---------QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALR 234 (317)
T ss_dssp TTCCEEECTTSC-CCEEEC---------CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCC
T ss_pred CcCCEEECCCCc-Cccccc---------ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhh
Confidence 999999999986 666651 135899999999996 78888765 467899999999886 6778999888
Q ss_pred CCCCcceeEccCccccccc
Q 020667 258 STPKLHEVQWPGEARWAWK 276 (323)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~~ 276 (323)
.+++|+.|++ ..+.+.
T Consensus 235 ~l~~L~~L~l---~~N~~~ 250 (317)
T 3o53_A 235 FSQNLEHFDL---RGNGFH 250 (317)
T ss_dssp CCTTCCEEEC---TTCCCB
T ss_pred cCCCCCEEEc---cCCCcc
Confidence 9999999999 444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=155.59 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++ +.++++.|.. ++.+++|++|+++++. +. .+ .+..+..+++|++|+++++ .+..++.
T Consensus 73 ~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~--~~------~~~~~~~l~~L~~L~L~~n-~l~~l~~ 140 (597)
T 3oja_B 73 SFRQVELLNLND-LQIEEIDTYA-FAYAHTIQKLYMGFNA-IR--YL------PPHVFQNVPLLTVLVLERN-DLSSLPR 140 (597)
T ss_dssp HCCCCSEEECTT-SCCCEECTTT-TTTCTTCCEEECCSSC-CC--CC------CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCcEEECCC-CCCCCCChHH-hcCCCCCCEEECCCCc-CC--CC------CHHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence 566666666666 4455553333 5566666666666653 22 11 1122346778888888876 4666665
Q ss_pred cCccccCCCCccEEEEcCC------chhhhhccCCcce
Q 020667 101 SNLGILEFPSLKELWISGC------PKFMERYNRTTNI 132 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L 132 (323)
.. +..+++|++|++++| |..++.+++|+.|
T Consensus 141 ~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 141 GI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TT--TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred HH--hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 43 146788888888877 3344555556555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=142.63 Aligned_cols=213 Identities=12% Similarity=0.107 Sum_probs=147.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++.+ ..++.+++|++|+++++..-. + .+..+..+++|++|+++++ .++.++..
T Consensus 52 ~~l~~L~L~~-n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~---~------~~~~~~~l~~L~~L~Ls~n-~l~~l~~~- 118 (330)
T 1xku_A 52 PDTALLDLQN-NKITEIKD-GDFKNLKNLHTLILINNKISK---I------SPGAFAPLVKLERLYLSKN-QLKELPEK- 118 (330)
T ss_dssp TTCCEEECCS-SCCCCBCT-TTTTTCTTCCEEECCSSCCCC---B------CTTTTTTCTTCCEEECCSS-CCSBCCSS-
T ss_pred CCCeEEECCC-CcCCEeCh-hhhccCCCCCEEECCCCcCCe---e------CHHHhcCCCCCCEEECCCC-cCCccChh-
Confidence 6888899988 56777644 337788999999998774322 1 1223447888999999887 46666654
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCc--cccCCCCCCCCCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHL--VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
.+++|++|++++| +..+..+++|+.| .+.++... +..+..+..+++|++|++++|. ++.++ ..
T Consensus 119 ----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~--~~- 189 (330)
T 1xku_A 119 ----MPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP--QG- 189 (330)
T ss_dssp ----CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE-ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC--SS-
T ss_pred ----hcccccEEECCCCcccccCHhHhcCCccccEE-ECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC--cc-
Confidence 3478899998888 2334556666666 45555432 2344556778889999998875 44442 21
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
..++|++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++| .++.+|.
T Consensus 190 -~~~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 190 -LPPSLTELHLDGNK-ITKVD-------AASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp -CCTTCSEEECTTSC-CCEEC-------TGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSS-CCSSCCT
T ss_pred -ccccCCEEECCCCc-CCccC-------HHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCC-cCccCCh
Confidence 23788889988875 44443 134467889999999886 677776533 467889999999886 5668888
Q ss_pred CCCCCCCcceeEccC
Q 020667 255 GNSSTPKLHEVQWPG 269 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~ 269 (323)
++..+++|++|++.+
T Consensus 258 ~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 258 GLADHKYIQVVYLHN 272 (330)
T ss_dssp TTTTCSSCCEEECCS
T ss_pred hhccCCCcCEEECCC
Confidence 888889999999944
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=156.66 Aligned_cols=235 Identities=13% Similarity=0.058 Sum_probs=137.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC----------------------CCceEEeeccc-cccCC-
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP----------------------VLKELIVMDNQ-EERKN- 76 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~----------------------~l~~l~~~~~~-~~~~~- 76 (323)
++++|++|+|++| .+.+.+|.. ++++++|+.|+++++. +++.+.+..+. ..++.
T Consensus 489 ~L~~L~~L~Ls~N-~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNC-PNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESC-TTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCC-CCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 6888999999884 445556755 6888889999888876 55555555443 44555
Q ss_pred -CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccC-CcceeeecCCCCccccCCCCC
Q 020667 77 -NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNR-TTNILTERGCDHLVDLVPSST 149 (323)
Q Consensus 77 -~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~-L~~L~~i~~~~~l~~l~~~~~ 149 (323)
.+..+++|+.|+++++. +..+| . +..+++|+.|++++| |..+..+++ |+.| .+.+|. +..+|..+.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~---~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L-~Ls~N~-L~~lp~~~~ 639 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-A---FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL-GFSHNK-LKYIPNIFN 639 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-C---CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE-ECCSSC-CCSCCSCCC
T ss_pred hhhhcCCCCCEEECCCCC-cccch-h---hcCCCcceEEECcCCccccchHHHhhccccCCEE-ECcCCC-CCcCchhhh
Confidence 57788888888888774 45666 3 346778888888777 334444555 5555 344443 224443322
Q ss_pred CC-------------------------------CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeecc
Q 020667 150 SF-------------------------------QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVD 198 (323)
Q Consensus 150 ~l-------------------------------~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 198 (323)
.+ ++|+.|++++|. ++.++ ...+..+++|+.|++++|. +..++...
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp-~~~~~~l~~L~~L~Ls~N~-L~~ip~~~ 716 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFP-TELFATGSPISTIILSNNL-MTSIPENS 716 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCC-HHHHHTTCCCSEEECCSCC-CSCCCTTS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccC-HHHHccCCCCCEEECCCCc-CCccChHH
Confidence 22 245555555553 33331 2233467788888887764 44555211
Q ss_pred CcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 199 DVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 199 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
-.........+++|+.|+++++ +++.++.......+++|+.|++++|. +..+|..+..+++|+.|++.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred hccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence 0000000123347777777775 56666543211256777777776643 344666666667777777733
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=147.19 Aligned_cols=228 Identities=14% Similarity=0.165 Sum_probs=119.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++ |...+..+++|++|+++++. +.. +. +..+..+++|++|+++++ .++.++...
T Consensus 52 ~~L~~L~l~~-n~i~~~-~~~~~~~l~~L~~L~L~~n~-l~~--~~------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYI-SNSDLQRCVNLQALVLTSNG-INT--IE------EDSFSSLGSLEHLDLSYN-YLSNLSSSW 119 (353)
T ss_dssp TTCCEEECTT-SCCCEE-CTTTTTTCTTCCEEECTTSC-CCE--EC------TTTTTTCTTCCEEECCSS-CCSSCCHHH
T ss_pred ccCcEEECCC-CcCccc-CHHHhccCCCCCEEECCCCc-cCc--cC------HhhcCCCCCCCEEECCCC-cCCcCCHhH
Confidence 4666777766 456664 33225666677777766652 331 11 111224556666666655 344444321
Q ss_pred ccccCCCCccEEEEcCCc-----h--hhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGCP-----K--FMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp-----~--~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
+..+++|++|++++|. . .+..+++|+.| .+.++..++.++ ..+..+++|++|++++|. ++... +..+
T Consensus 120 --~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l 194 (353)
T 2z80_A 120 --FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL-RVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYE-PKSL 194 (353)
T ss_dssp --HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE-EEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC-TTTT
T ss_pred --hCCCccCCEEECCCCCCcccCchhhhccCCCCcEE-ECCCCccccccCHHHccCCCCCCEEECCCCC-cCccC-HHHH
Confidence 1245566666666551 1 23334444444 344444444442 234455556666665554 22221 3344
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCC-------------------------
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG------------------------- 229 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~------------------------- 229 (323)
..+++|++|++++|. ++.++. ..+..+++|+.|+++++ .++.++..
T Consensus 195 ~~l~~L~~L~l~~n~-l~~~~~-------~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 195 KSIQNVSHLILHMKQ-HILLLE-------IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp TTCSEEEEEEEECSC-STTHHH-------HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred hccccCCeecCCCCc-cccchh-------hhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcc
Confidence 555555555555544 233320 01123455555555543 22222110
Q ss_pred -----CccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEccCccccccccchh
Q 020667 230 -----NCAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 230 -----~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
.....+++|++|++++| .++.+|.++ ..+++|++|++ ..+.+.++.+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L---~~N~~~~~~~ 318 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC---CSSCBCCCHH
T ss_pred hhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe---eCCCccCcCC
Confidence 01346889999999886 677899885 68999999999 5566666543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=151.43 Aligned_cols=242 Identities=18% Similarity=0.154 Sum_probs=149.8
Q ss_pred ccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC----------CCceEEeeccccccCCCcccc
Q 020667 12 LSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP----------VLKELIVMDNQEERKNNNVMF 81 (323)
Q Consensus 12 ~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~----------~l~~l~~~~~~~~~~~~~~~l 81 (323)
...|..+. .+++|++|+++++ .++++ |.. +..+ +|++|++++|. .++.+.+..+..........+
T Consensus 272 ~~~~~~~~-~l~~L~~L~l~~~-~l~~l-~~~-~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 272 DDIIDLFN-CLTNVSSFSLVSV-TIERV-KDF-SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp SCSTTTTG-GGTTCSEEEEESC-EECSC-CBC-CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhchhhhc-CcCcccEEEecCc-cchhh-hhh-hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 33455666 8899999999984 56664 655 4566 88888888653 333333333221111111466
Q ss_pred CCcCEEecccccccccc---cccCccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccC-CCCCCCC
Q 020667 82 PQLQYLKMFNLENFTSF---CTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLV-PSSTSFQ 152 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~ 152 (323)
++|++|+++++. +... +.. ...+++|++|++++|. ..+..+++|+.| .+.+|......+ ..+..++
T Consensus 347 ~~L~~L~l~~n~-l~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 347 PSLEFLDLSRNG-LSFKGCCSQS---DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp TTCCEEECCSSC-CBEEEEEEHH---HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEE-ECTTSEEESCTTSCTTTTCT
T ss_pred CCCCEEeCcCCc-cCcccccccc---ccccCccCEEECCCCccccccccccccCCCCEE-EccCCccccccchhhhhcCC
Confidence 777777777663 3332 222 2367777777777772 223445555555 445443333222 2456778
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCccc-ceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRI-TEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
+|++|++++|...... +..+.++++|+.|++++|... +.++ ..+..+++|+.|++++| +++.+....
T Consensus 422 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~p--------~~~~~l~~L~~L~l~~n-~l~~~~~~~- 489 (570)
T 2z63_A 422 NLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLP--------DIFTELRNLTFLDLSQC-QLEQLSPTA- 489 (570)
T ss_dssp TCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEEC--------SCCTTCTTCCEEECTTS-CCCEECTTT-
T ss_pred CCCEEeCcCCcccccc--hhhhhcCCcCcEEECcCCcCccccch--------hhhhcccCCCEEECCCC-ccccCChhh-
Confidence 8888888888533332 445677888888888888644 2344 34467888999999887 677664432
Q ss_pred cccCCcccEEeecCCCCCcccC-CCCCCCCCcceeEccCccccccccch
Q 020667 232 AFKFPSLERLVLDDCPSMKIFS-EGNSSTPKLHEVQWPGEARWAWKDDL 279 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~~L~~L~l~~~~~~~~~~~l 279 (323)
+..+++|++|++++|. ++.+| ..+..+++|++|++ ..+.+.++.
T Consensus 490 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l---~~N~~~~~~ 534 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL---HTNPWDCSC 534 (570)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC---CSSCBCCCT
T ss_pred hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEe---cCCcccCCC
Confidence 4578889999998874 44444 45667889999998 445555543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-17 Score=151.45 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=159.0
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|+|++ +.++++.|.. ++.+++|++|++++|..-. . .. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-~--~~--------l~~l~~L~~L~Ls~N-~l~~l~- 96 (487)
T 3oja_A 32 SAWNVKELDLSG-NPLSQISAAD-LAPFTKLELLNLSSNVLYE-T--LD--------LESLSTLRTLDLNNN-YVQELL- 96 (487)
T ss_dssp TGGGCCEEECCS-SCCCCCCGGG-GTTCTTCCEEECTTSCCEE-E--EE--------CTTCTTCCEEECCSS-EEEEEE-
T ss_pred cCCCccEEEeeC-CcCCCCCHHH-HhCCCCCCEEEeeCCCCCC-C--cc--------cccCCCCCEEEecCC-cCCCCC-
Confidence 345999999999 6788865544 7899999999999885332 1 11 237899999999988 466554
Q ss_pred cCccccCCCCccEEEEcCCchh---hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 101 SNLGILEFPSLKELWISGCPKF---MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~---~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
..++|++|++++|.-. ...+++|+.| .+.+|...+..|..+..+++|++|++++|. ++...+......+
T Consensus 97 ------~~~~L~~L~L~~N~l~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l 168 (487)
T 3oja_A 97 ------VGPSIETLHAANNNISRVSCSRGQGKKNI-YLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASS 168 (487)
T ss_dssp ------ECTTCCEEECCSSCCCCEEECCCSSCEEE-ECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred ------CCCCcCEEECcCCcCCCCCccccCCCCEE-ECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhC
Confidence 3478999999998311 1235566666 566665555456677889999999999985 5544323333478
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|+.|++++|. +..++. ...+++|+.|+++++ .++.++.. +..+++|+.|++++| .+..+|..+.
T Consensus 169 ~~L~~L~Ls~N~-l~~~~~---------~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~ 234 (487)
T 3oja_A 169 DTLEHLNLQYNF-IYDVKG---------QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALR 234 (487)
T ss_dssp TTCCEEECTTSC-CCEEEC---------CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCC
T ss_pred CcccEEecCCCc-cccccc---------cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhc
Confidence 999999999987 555541 136899999999996 78888765 468899999999885 5667999888
Q ss_pred CCCCcceeEccC
Q 020667 258 STPKLHEVQWPG 269 (323)
Q Consensus 258 ~~~~L~~L~l~~ 269 (323)
.+++|+.|++.+
T Consensus 235 ~l~~L~~L~l~~ 246 (487)
T 3oja_A 235 FSQNLEHFDLRG 246 (487)
T ss_dssp CCTTCCEEECTT
T ss_pred cCCCCCEEEcCC
Confidence 899999999944
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=161.66 Aligned_cols=235 Identities=10% Similarity=0.047 Sum_probs=151.9
Q ss_pred ccccccccCCcccEEeeeccccccee-----------------ccchhHh--cCCCccEEEEecCCCCceEEeecccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYL-----------------FSSSIVS--SFVRLQRIEIVECPVLKELIVMDNQEER 74 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~-----------------~p~~~~~--~l~~L~~L~ls~c~~l~~l~~~~~~~~~ 74 (323)
.|.+++ ++++|++|++++ +.+++. +|.. ++ ++++|++|++++|.... ..
T Consensus 198 ip~~l~-~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~---------~~ 265 (636)
T 4eco_A 198 VSKAVM-RLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLT---------KL 265 (636)
T ss_dssp ECGGGG-GCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCS---------SC
T ss_pred CCHHHh-cccCCCEEECcC-CccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCc---------cC
Confidence 688899 999999999999 568883 4766 67 89999999999986554 23
Q ss_pred CCCccccCCcCEEeccccccccc--ccccCc---cccCCCCccEEEEcCC-----ch--hhhhccCCcceeeecCCCCcc
Q 020667 75 KNNNVMFPQLQYLKMFNLENFTS--FCTSNL---GILEFPSLKELWISGC-----PK--FMERYNRTTNILTERGCDHLV 142 (323)
Q Consensus 75 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~---~~~~l~~L~~L~l~~c-----p~--~~~~l~~L~~L~~i~~~~~l~ 142 (323)
|..+..+++|++|+++++..+.+ +|.... ....+++|++|++++| |. .++.+++|+.| .+.++...+
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L-~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML-ECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEE-ECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEE-eCcCCcCcc
Confidence 34445888999999998863553 554422 0012388889988888 44 56667777777 566666555
Q ss_pred ccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccc-ccEEEEccCcccceeeeccCc---------------c---cc
Q 020667 143 DLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVR-LEYMEIESCDRITEIVLVDDV---------------A---AK 203 (323)
Q Consensus 143 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~-L~~L~l~~c~~l~~i~~~~~~---------------~---~~ 203 (323)
.+| .+..+++|++|++++|. ++.+ +..+..+++ |++|++++|. +..+|..-.. . ..
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~-l~~l--p~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQ-ITEI--PANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSE-EEEC--CTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred chh-hhCCCCCCCEEECCCCc-cccc--cHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 777 67777888888888774 4444 445677777 8888887765 3355421000 0 00
Q ss_pred cccc-------cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCC--------CCcceeEcc
Q 020667 204 DEVI-------TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSST--------PKLHEVQWP 268 (323)
Q Consensus 204 ~~~~-------~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~--------~~L~~L~l~ 268 (323)
..+. .+++|+.|+++++ .++.++... ...+++|++|++++|. ++.+|...... ++|++|++.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred hhhcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECc
Confidence 1111 3346666666664 455554422 2346777778877753 44677654332 277888773
Q ss_pred C
Q 020667 269 G 269 (323)
Q Consensus 269 ~ 269 (323)
+
T Consensus 497 ~ 497 (636)
T 4eco_A 497 F 497 (636)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=152.60 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=48.0
Q ss_pred cccccCeeecccccccceecC-CCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchhhhceee
Q 020667 208 TFRELKELKLLNLESLTSFCS-GNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKV 286 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l 286 (323)
.+++|+.|+++++ +++.++. +.....+++|++|++++| .++.+|..+..+++|++|++.++.-..+.+.+++.++.+
T Consensus 359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436 (549)
T ss_dssp SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence 3455555555553 3444331 011356788888888886 566888888788889998885543223334444555555
Q ss_pred eccc
Q 020667 287 IFPA 290 (323)
Q Consensus 287 ~~~~ 290 (323)
.+.+
T Consensus 437 ~Ls~ 440 (549)
T 2z81_A 437 DVSN 440 (549)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 5443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=141.55 Aligned_cols=144 Identities=12% Similarity=0.195 Sum_probs=80.5
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. .+++|++|++++ +.++++ |. +..+++|++|+++++.. .. ++. +..+++|++|++++|.....
T Consensus 84 ~~-~l~~L~~L~L~~-n~i~~~-~~--~~~l~~L~~L~l~~n~i-~~--~~~--------~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 84 LS-NLVKLTNLYIGT-NKITDI-SA--LQNLTNLRELYLNEDNI-SD--ISP--------LANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp GT-TCTTCCEEECCS-SCCCCC-GG--GTTCTTCSEEECTTSCC-CC--CGG--------GTTCTTCCEEECTTCTTCCC
T ss_pred hh-cCCcCCEEEccC-CcccCc-hH--HcCCCcCCEEECcCCcc-cC--chh--------hccCCceeEEECCCCCCccc
Confidence 66 899999999998 467764 54 78899999999987642 21 111 23567777777777655554
Q ss_pred ccccCccccCCCCccEEEEcCCch----hhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhH
Q 020667 98 FCTSNLGILEFPSLKELWISGCPK----FMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~----~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
++.. ..+++|++|++++|.- .+..+++|+.| ++.+|. +..++. +..+++|+.|++++|. +.... .
T Consensus 148 ~~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L-~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--~- 216 (347)
T 4fmz_A 148 LSPL----SNMTGLNYLTVTESKVKDVTPIANLTDLYSL-SLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDIT--P- 216 (347)
T ss_dssp CGGG----TTCTTCCEEECCSSCCCCCGGGGGCTTCSEE-ECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG--G-
T ss_pred ccch----hhCCCCcEEEecCCCcCCchhhccCCCCCEE-EccCCc-cccccc-ccCCCccceeecccCC-CCCCc--h-
Confidence 4431 3566666666666621 13334444444 333332 233322 4445555555555542 22221 1
Q ss_pred HhccccccEEEEccC
Q 020667 174 AKTLVRLEYMEIESC 188 (323)
Q Consensus 174 l~~l~~L~~L~l~~c 188 (323)
+..+++|++|++++|
T Consensus 217 ~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 217 VANMTRLNSLKIGNN 231 (347)
T ss_dssp GGGCTTCCEEECCSS
T ss_pred hhcCCcCCEEEccCC
Confidence 344555555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-16 Score=132.32 Aligned_cols=200 Identities=16% Similarity=0.081 Sum_probs=148.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++ |...++.+++|++|+++++..++ .++.. .+..+++|++|++++|..++.++...
T Consensus 31 ~~l~~L~l~~-n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~--~i~~~------~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTI-PSHAFSNLPNISRIYVSIDVTLQ--QLESH------SFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEES-CCCSEE-CTTTTTTCTTCCEEEEECCSSCC--EECTT------TEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeC-CcceEE-CHHHccCCCCCcEEeCCCCCCcc--eeCHh------HcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4899999998 678887 44447889999999999987676 33321 12378999999999866788877553
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCC---EEEeecCcCcceecchhHHhcccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLT---NLVVSCCKGLKIVLTFSIAKTLVR 179 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~---~L~l~~c~~l~~l~~~~~l~~l~~ 179 (323)
+..+++|++|++++|. +..+|. +..+++|+ +|++++|..++.++ +..+.++++
T Consensus 101 --f~~l~~L~~L~l~~n~--------------------l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~ 156 (239)
T 2xwt_C 101 --LKELPLLKFLGIFNTG--------------------LKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCN 156 (239)
T ss_dssp --EECCTTCCEEEEEEEC--------------------CCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBS
T ss_pred --hCCCCCCCEEeCCCCC--------------------Cccccc-cccccccccccEEECCCCcchhhcC-cccccchhc
Confidence 3578999999998862 112222 45566666 99999986677764 335778999
Q ss_pred cc-EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccC-CcccEEeecCCCCCcccCCCCC
Q 020667 180 LE-YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKF-PSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 180 L~-~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
|+ .|+++++. ++.++. .....++|+.|++.+++.++.++... +..+ ++|++|++++ +.++.+|..
T Consensus 157 L~~~L~l~~n~-l~~i~~--------~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~-N~l~~l~~~-- 223 (239)
T 2xwt_C 157 ETLTLKLYNNG-FTSVQG--------YAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQ-TSVTALPSK-- 223 (239)
T ss_dssp SEEEEECCSCC-CCEECT--------TTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTT-CCCCCCCCT--
T ss_pred ceeEEEcCCCC-CcccCH--------hhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCC-CccccCChh--
Confidence 99 99998875 557762 11233789999999986798887654 4567 8999999988 567788875
Q ss_pred CCCCcceeEccC
Q 020667 258 STPKLHEVQWPG 269 (323)
Q Consensus 258 ~~~~L~~L~l~~ 269 (323)
.+++|+.|++.+
T Consensus 224 ~~~~L~~L~l~~ 235 (239)
T 2xwt_C 224 GLEHLKELIARN 235 (239)
T ss_dssp TCTTCSEEECTT
T ss_pred HhccCceeeccC
Confidence 678999998844
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=145.02 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 147 SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 147 ~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
.+..+++|++|++++|. ++.+. +..+..+++|++|++++|. +..++ .....+++|++|+++++ .++.+
T Consensus 243 ~l~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNNR-LVALN--------LYGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEE-SGGGTTCSSCCEEECCSSC-CCEEE--------CSSSCCTTCCEEECCSS-CCCCC
T ss_pred HHcCCCCccEEECCCCc-CCCcC-hhHccccccCCEEECCCCc-CcccC--------cccCCCCCCCEEECCCC-cceec
Confidence 35667889999999885 44432 4567889999999999975 66666 23357899999999997 78877
Q ss_pred cCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCcccccccc
Q 020667 227 CSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKD 277 (323)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~ 277 (323)
+.. ...+++|++|++++|+ ++.+| +..+++|++|++ ..+.+.+
T Consensus 311 ~~~--~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l---~~N~~~~ 353 (390)
T 3o6n_A 311 ERN--QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTL---SHNDWDC 353 (390)
T ss_dssp GGG--HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEEC---CSSCEEH
T ss_pred Ccc--ccccCcCCEEECCCCc-cceeC--chhhccCCEEEc---CCCCccc
Confidence 754 3678999999999865 66666 557899999999 4444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=153.55 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=61.1
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|+|++ +.++++.| ..++.+++|++|+++++. +. .++.. .+..+++|++|+++++ .
T Consensus 92 ~~~~~-~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~--~l~~~------~~~~l~~L~~L~Ls~N-~ 158 (597)
T 3oja_B 92 TYAFA-YAHTIQKLYMGF-NAIRYLPP-HVFQNVPLLTVLVLERND-LS--SLPRG------IFHNTPKLTTLSMSNN-N 158 (597)
T ss_dssp TTTTT-TCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSC-CC--CCCTT------TTTTCTTCCEEECCSS-C
T ss_pred hHHhc-CCCCCCEEECCC-CcCCCCCH-HHHcCCCCCCEEEeeCCC-CC--CCCHH------HhccCCCCCEEEeeCC-c
Confidence 34566 888888888888 56777644 436788888888888774 33 22211 1236888888888887 4
Q ss_pred cccccccCccccCCCCccEEEEcCC
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+..++... +..+++|++|++++|
T Consensus 159 l~~~~~~~--~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 159 LERIEDDT--FQATTSLQNLQLSSN 181 (597)
T ss_dssp CCBCCTTT--TTTCTTCCEEECTTS
T ss_pred CCCCChhh--hhcCCcCcEEECcCC
Confidence 55554432 247788888888887
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=138.63 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=139.3
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. +. ..+.. .+++|++|+++++ .+.
T Consensus 73 ~~~-~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~---------~l~~~--~~~~L~~L~l~~n-~i~ 136 (332)
T 2ft3_A 73 DFK-GLQHLYALVLVN-NKISKIHEKA-FSPLRKLQKLYISKNH-LV---------EIPPN--LPSSLVELRIHDN-RIR 136 (332)
T ss_dssp TTT-TCTTCCEEECCS-SCCCEECGGG-STTCTTCCEEECCSSC-CC---------SCCSS--CCTTCCEEECCSS-CCC
T ss_pred Hhh-CCCCCcEEECCC-CccCccCHhH-hhCcCCCCEEECCCCc-CC---------ccCcc--ccccCCEEECCCC-ccC
Confidence 455 666666666666 4555554433 5566666666666553 22 11222 2378888888877 455
Q ss_pred cccccCccccCCCCccEEEEcCCchh-----hhhcc--CCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKF-----MERYN--RTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL 169 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~-----~~~l~--~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 169 (323)
.++... +..+++|++|++++|.-. ...+. +|+.| .+.++ .+..+|..+. ++|++|++++|. ++.+.
T Consensus 137 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L-~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-i~~~~ 209 (332)
T 2ft3_A 137 KVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL-RISEA-KLTGIPKDLP--ETLNELHLDHNK-IQAIE 209 (332)
T ss_dssp CCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC-BCCSS-BCSSCCSSSC--SSCSCCBCCSSC-CCCCC
T ss_pred ccCHhH--hCCCccCCEEECCCCccccCCCCcccccCCccCEE-ECcCC-CCCccCcccc--CCCCEEECCCCc-CCccC
Confidence 665543 257899999999988431 11122 44555 34443 4555665443 789999999885 44442
Q ss_pred chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCC
Q 020667 170 TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 249 (323)
+..+..+++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++.. ...+++|++|+++++ .+
T Consensus 210 -~~~l~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N-~l 276 (332)
T 2ft3_A 210 -LEDLLRYSKLYRLGLGHNQ-IRMIE-------NGSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTN-NI 276 (332)
T ss_dssp -TTSSTTCTTCSCCBCCSSC-CCCCC-------TTGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSS-CC
T ss_pred -HHHhcCCCCCCEEECCCCc-CCcCC-------hhHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCC-CC
Confidence 3457788999999999875 44444 134567889999999986 78877764 467899999999885 46
Q ss_pred cccCCCC-C------CCCCcceeEccC
Q 020667 250 KIFSEGN-S------STPKLHEVQWPG 269 (323)
Q Consensus 250 ~~lp~~~-~------~~~~L~~L~l~~ 269 (323)
+.+|... . ..++|+.+++.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CccChhHccccccccccccccceEeec
Confidence 6665432 1 146788998855
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=149.33 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=162.5
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC-----------------CCceEEeeccc--cccCCC
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP-----------------VLKELIVMDNQ--EERKNN 77 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~-----------------~l~~l~~~~~~--~~~~~~ 77 (323)
.+. .+++|++|++++ +.++++.|. .+..+++|++|++++|. .++.+.+..+. +..+..
T Consensus 324 ~~~-~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 324 SFQ-WLKCLEHLNMED-NDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTT-TCTTCCEEECCS-CCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred hcc-cCCCCCEEECCC-CccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 355 677888888877 567765443 36788888888888763 34444443332 223445
Q ss_pred ccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCC--ccccCCCCC
Q 020667 78 NVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDH--LVDLVPSST 149 (323)
Q Consensus 78 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~--l~~l~~~~~ 149 (323)
+..+++|+.|+++++.....++... +..+++|++|++++|. ..+..+++|+.| .+.++.. ++.+|..+.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQE--WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL-MLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGG--GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE-ECTTSCCBCTTCSSCTTT
T ss_pred hhCCCCCCEEeCCCCcCccccCccc--ccCcccccEEecCCCCcceeChhhhhcCcccccc-hhccccccccccCCcccc
Confidence 5677888888888875434444322 3478888888888883 334456666666 4555442 356677788
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccC-cccccccccccccCeeecccccccceecC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDD-VAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~-~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.+++|+.|++++|. ++.++ +..+.++++|++|++++|. +..++...- +.....+..+++|+.|+++++ +++.++.
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCEEECCCCC-CCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 89999999999885 55553 3457889999999999876 444431100 000112467899999999996 7888876
Q ss_pred CCccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEccC
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQWPG 269 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~ 269 (323)
.. +..+++|++|++++ +.++.+|.+. ..+++|+.|++.+
T Consensus 554 ~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 554 EV-FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred HH-cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC
Confidence 43 46789999999977 5677888764 5789999999944
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=135.65 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=144.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
..++|++|++++ +.++++.+. .+..+++|++|+++++. +.. +. +..+..+++|++|+++++..++.++.
T Consensus 30 ~~~~l~~L~l~~-n~i~~~~~~-~~~~~~~L~~L~l~~n~-l~~--~~------~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 30 IPAASQRIFLHG-NRISHVPAA-SFRACRNLTILWLHSNV-LAR--ID------AAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCTTCSEEECTT-SCCCEECTT-TTTTCTTCCEEECCSSC-CCE--EC------TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCCceEEEeeC-CcCCccCHH-HcccCCCCCEEECCCCc-cce--eC------HhhcCCccCCCEEeCCCCCCccccCH
Confidence 357899999998 678886443 37889999999999874 442 11 12233788999999998865777644
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
.. +..+++|++|++++|. +. ...+..+..+++|++|++++|. ++.++ +..+..+++|
T Consensus 99 ~~--~~~l~~L~~L~l~~n~--------l~-----------~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 155 (285)
T 1ozn_A 99 AT--FHGLGRLHTLHLDRCG--------LQ-----------ELGPGLFRGLAALQYLYLQDNA-LQALP-DDTFRDLGNL 155 (285)
T ss_dssp TT--TTTCTTCCEEECTTSC--------CC-----------CCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred HH--hcCCcCCCEEECCCCc--------CC-----------EECHhHhhCCcCCCEEECCCCc-ccccC-HhHhccCCCc
Confidence 33 2478899999988762 11 1113346678899999999885 45442 3346788999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC-CCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE-GNSST 259 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~ 259 (323)
++|++++|. ++.++ ...+..+++|+.|+++++ .++.+.... +..+++|++|++++| .++.+|. .+..+
T Consensus 156 ~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 224 (285)
T 1ozn_A 156 THLFLHGNR-ISSVP-------ERAFRGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPL 224 (285)
T ss_dssp CEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTC
T ss_pred cEEECCCCc-ccccC-------HHHhcCccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccC
Confidence 999999874 66665 123467899999999996 577774433 467899999999886 4555553 36678
Q ss_pred CCcceeEccC
Q 020667 260 PKLHEVQWPG 269 (323)
Q Consensus 260 ~~L~~L~l~~ 269 (323)
++|++|++.+
T Consensus 225 ~~L~~L~l~~ 234 (285)
T 1ozn_A 225 RALQYLRLND 234 (285)
T ss_dssp TTCCEEECCS
T ss_pred cccCEEeccC
Confidence 9999999943
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-16 Score=139.04 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=137.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ +.++++.|.. +..+++|++|+++++. +.. ..+. .+..+++|++|+++++ .+..++..
T Consensus 54 ~~l~~L~l~~-n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~~-~~~~-------~~~~l~~L~~L~L~~n-~l~~l~~~- 120 (332)
T 2ft3_A 54 PDTTLLDLQN-NDISELRKDD-FKGLQHLYALVLVNNK-ISK-IHEK-------AFSPLRKLQKLYISKN-HLVEIPPN- 120 (332)
T ss_dssp TTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCE-ECGG-------GSTTCTTCCEEECCSS-CCCSCCSS-
T ss_pred CCCeEEECCC-CcCCccCHhH-hhCCCCCcEEECCCCc-cCc-cCHh-------HhhCcCCCCEEECCCC-cCCccCcc-
Confidence 5777788877 4566654433 6777888888887764 331 1122 2236778888888776 45555554
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCc--cccCCCCCCCCCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHL--VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
.+++|++|++++| +..+..+++|+.| .+.++... +..+..+..+ +|++|++++|. ++.++ ..
T Consensus 121 ----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~--~~- 190 (332)
T 2ft3_A 121 ----LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI-EMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP--KD- 190 (332)
T ss_dssp ----CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEE-ECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC--SS-
T ss_pred ----ccccCCEEECCCCccCccCHhHhCCCccCCEE-ECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC--cc-
Confidence 2377888888777 2234445556655 44444332 1233344444 77777777764 44442 21
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
..++|++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++| .++.+|.
T Consensus 191 -~~~~L~~L~l~~n~-i~~~~-------~~~l~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 191 -LPETLNELHLDHNK-IQAIE-------LEDLLRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp -SCSSCSCCBCCSSC-CCCCC-------TTSSTTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCBCCT
T ss_pred -ccCCCCEEECCCCc-CCccC-------HHHhcCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCeecCh
Confidence 12678888887764 33333 134467899999999996 677776543 467899999999886 6778999
Q ss_pred CCCCCCCcceeEccC
Q 020667 255 GNSSTPKLHEVQWPG 269 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~ 269 (323)
++..+++|++|++.+
T Consensus 259 ~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHT 273 (332)
T ss_dssp TGGGCTTCCEEECCS
T ss_pred hhhcCccCCEEECCC
Confidence 888999999999944
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-15 Score=139.17 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=43.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC-----------CCCceEEeeccccccCCCccccCCcCE
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC-----------PVLKELIVMDNQEERKNNNVMFPQLQY 86 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c-----------~~l~~l~~~~~~~~~~~~~~~l~~L~~ 86 (323)
+. .+++|++|++++ +.++++ +. +..+++|++|++++| +.++.+.+...... ...+..+++|++
T Consensus 108 ~~-~l~~L~~L~L~~-n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~L~~ 181 (466)
T 1o6v_A 108 LA-NLTNLTGLTLFN-NQITDI-DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-LKPLANLTTLER 181 (466)
T ss_dssp GT-TCTTCCEEECCS-SCCCCC-GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-CGGGTTCTTCCE
T ss_pred hc-CCCCCCEEECCC-CCCCCC-hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccC-chhhccCCCCCE
Confidence 44 566666666665 345543 33 456666666666543 23333332211111 112445666666
Q ss_pred EecccccccccccccCccccCCCCccEEEEcCC
Q 020667 87 LKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 87 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
|+++++. +..++. ...+++|++|++++|
T Consensus 182 L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 182 LDISSNK-VSDISV----LAKLTNLESLIATNN 209 (466)
T ss_dssp EECCSSC-CCCCGG----GGGCTTCSEEECCSS
T ss_pred EECcCCc-CCCChh----hccCCCCCEEEecCC
Confidence 6666553 333321 124455555555544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=135.37 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=122.1
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
++. .+++|++|++++| .++++ |. +..+++|++|++++|. +..+ +.+..+++|++|+++++ .+.
T Consensus 61 ~~~-~~~~L~~L~l~~n-~i~~~-~~--~~~l~~L~~L~L~~n~-i~~~----------~~~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 61 GIE-YLTNLEYLNLNGN-QITDI-SP--LSNLVKLTNLYIGTNK-ITDI----------SALQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp TGG-GCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCC----------GGGTTCTTCSEEECTTS-CCC
T ss_pred hhh-hcCCccEEEccCC-ccccc-hh--hhcCCcCCEEEccCCc-ccCc----------hHHcCCCcCCEEECcCC-ccc
Confidence 366 7888888888884 67764 44 6788888888888773 3321 12448999999999987 466
Q ss_pred cccccCccccCCCCccEEEEcCCch-----hhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecch
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPK-----FMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTF 171 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~-----~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 171 (323)
.++.. ..+++|++|++++|+. .+..+++|+.| .+.+|. +..++. +..+++|++|++++|. ++.++
T Consensus 124 ~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L-~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~-- 193 (347)
T 4fmz_A 124 DISPL----ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL-TVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDIS-- 193 (347)
T ss_dssp CCGGG----TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE-ECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCG--
T ss_pred Cchhh----ccCCceeEEECCCCCCcccccchhhCCCCcEE-EecCCC-cCCchh-hccCCCCCEEEccCCc-ccccc--
Confidence 65542 4799999999999942 24445666666 456554 444433 7789999999999985 55552
Q ss_pred hHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 172 SIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 172 ~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
. +..+++|+.|++++|. +..++. +..+++|++|++++| .++.++. ...+++|++|++++
T Consensus 194 ~-~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQ-ITDITP---------VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGT 252 (347)
T ss_dssp G-GGGCTTCCEEECCSSC-CCCCGG---------GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCS
T ss_pred c-ccCCCccceeecccCC-CCCCch---------hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCC
Confidence 2 7889999999998874 333321 234555555555553 3333332 22344444444444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=134.46 Aligned_cols=218 Identities=16% Similarity=0.175 Sum_probs=158.6
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
..+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++ .++.. .+++|++|+++++ .+
T Consensus 70 ~~~~-~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~--~l~~~---------~~~~L~~L~l~~n-~l 133 (330)
T 1xku_A 70 GDFK-NLKNLHTLILIN-NKISKISPGA-FAPLVKLERLYLSKNQ-LK--ELPEK---------MPKTLQELRVHEN-EI 133 (330)
T ss_dssp TTTT-TCTTCCEEECCS-SCCCCBCTTT-TTTCTTCCEEECCSSC-CS--BCCSS---------CCTTCCEEECCSS-CC
T ss_pred hhhc-cCCCCCEEECCC-CcCCeeCHHH-hcCCCCCCEEECCCCc-CC--ccChh---------hcccccEEECCCC-cc
Confidence 3577 899999999998 6788875655 7899999999999875 44 22221 3479999999987 45
Q ss_pred ccccccCccccCCCCccEEEEcCCch--------hhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 96 TSFCTSNLGILEFPSLKELWISGCPK--------FMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~cp~--------~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
..++... +..+++|++|++++|.- .+..+++|+.| .+.++ .+..+|..+. ++|++|++++|. ++.
T Consensus 134 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L-~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~ 206 (330)
T 1xku_A 134 TKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI-RIADT-NITTIPQGLP--PSLTELHLDGNK-ITK 206 (330)
T ss_dssp CBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE-ECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCE
T ss_pred cccCHhH--hcCCccccEEECCCCcCCccCcChhhccCCCCcCEE-ECCCC-ccccCCcccc--ccCCEEECCCCc-CCc
Confidence 5555432 24789999999998832 34445666666 45444 4556665543 899999999986 555
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. +..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ .++.++.. ...+++|++|++++|
T Consensus 207 ~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 207 VD-AASLKGLNNLAKLGLSFNS-ISAVD-------NGSLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN- 273 (330)
T ss_dssp EC-TGGGTTCTTCCEEECCSSC-CCEEC-------TTTGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-
T ss_pred cC-HHHhcCCCCCCEEECCCCc-CceeC-------hhhccCCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC-
Confidence 42 4567889999999999876 55554 134567899999999997 78888764 367899999999886
Q ss_pred CCcccCCCCC-------CCCCcceeEccC
Q 020667 248 SMKIFSEGNS-------STPKLHEVQWPG 269 (323)
Q Consensus 248 ~l~~lp~~~~-------~~~~L~~L~l~~ 269 (323)
.++.+|.... ..++++.+++.+
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred cCCccChhhcCCcccccccccccceEeec
Confidence 4666665322 246788898854
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-15 Score=150.22 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=26.9
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
|..+. .+++|++|++++|.....+.|. .++++++|++|+++++
T Consensus 41 ~~~~~-~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 41 ASSFP-FLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSS 83 (844)
T ss_dssp SSSCS-SCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTC
T ss_pred hhHCc-ccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCC
Confidence 44566 7777777777775444443233 3667777777777654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=159.01 Aligned_cols=234 Identities=11% Similarity=0.089 Sum_probs=155.5
Q ss_pred ccccccccCCcccEEeeecccccce-----------------eccchhHh--cCCCccEEEEecCCCCceEEeecccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRY-----------------LFSSSIVS--SFVRLQRIEIVECPVLKELIVMDNQEER 74 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~-----------------~~p~~~~~--~l~~L~~L~ls~c~~l~~l~~~~~~~~~ 74 (323)
.|.+++ ++++|++|+|++ +.+++ .+|.. ++ ++++|++|++++|.... . .
T Consensus 440 IP~~l~-~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~--~-------i 507 (876)
T 4ecn_A 440 ISKAIQ-RLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMT--Q-------L 507 (876)
T ss_dssp ECGGGG-GCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCC--S-------C
T ss_pred hhHHHh-cCCCCCEEECcC-CcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCc--c-------C
Confidence 588899 999999999999 67887 24766 45 99999999999987554 2 2
Q ss_pred CCCccccCCcCEEeccccccccc--ccccCc----cccCCCCccEEEEcCC-----ch--hhhhccCCcceeeecCCCCc
Q 020667 75 KNNNVMFPQLQYLKMFNLENFTS--FCTSNL----GILEFPSLKELWISGC-----PK--FMERYNRTTNILTERGCDHL 141 (323)
Q Consensus 75 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~----~~~~l~~L~~L~l~~c-----p~--~~~~l~~L~~L~~i~~~~~l 141 (323)
|..+..+++|+.|+++++..+.. +|.... ....+++|+.|++++| |. .++.+++|+.| .+.++..
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L-~Ls~N~l- 585 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL-DCVHNKV- 585 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE-ECTTSCC-
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE-ECCCCCc-
Confidence 33444889999999998853543 443211 0235668999999888 55 56667777777 4555543
Q ss_pred cccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccc-ccEEEEccCcccceeeeccCccc---------------c--
Q 020667 142 VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVR-LEYMEIESCDRITEIVLVDDVAA---------------K-- 203 (323)
Q Consensus 142 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~-L~~L~l~~c~~l~~i~~~~~~~~---------------~-- 203 (323)
..+| .+..+++|+.|++++|. +..+ +..+..+++ |+.|++++|. +..+|..-.... .
T Consensus 586 ~~lp-~~~~L~~L~~L~Ls~N~-l~~l--p~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 586 RHLE-AFGTNVKLTDLKLDYNQ-IEEI--PEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CBCC-CCCTTSEESEEECCSSC-CSCC--CTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred ccch-hhcCCCcceEEECcCCc-cccc--hHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 3776 67788888888888875 4444 455777787 8888888775 445542100000 0
Q ss_pred c----cc--ccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCC--------CCcceeEccC
Q 020667 204 D----EV--ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSST--------PKLHEVQWPG 269 (323)
Q Consensus 204 ~----~~--~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~--------~~L~~L~l~~ 269 (323)
. .. ...++|+.|+++++ .++.++... ...+++|++|++++| .++.+|.+.... ++|++|++.+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~-~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYN-EIQKFPTEL-FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHH-HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccchhhhccccCCCcCEEEccCC-cCCccCHHH-HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCC
Confidence 0 00 12236777777775 555555432 235788999999876 556788765432 2889999844
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=141.59 Aligned_cols=203 Identities=19% Similarity=0.222 Sum_probs=153.5
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
+..+. .+++|++|+|++ +.++++.+. .+..+++|++|+++++. ++ .++. ..+..+++|++|+++++ .
T Consensus 81 ~~~~~-~l~~L~~L~Ls~-n~i~~i~~~-~~~~l~~L~~L~L~~n~-l~--~~~~------~~~~~l~~L~~L~L~~N-~ 147 (440)
T 3zyj_A 81 VNSFK-HLRHLEILQLSR-NHIRTIEIG-AFNGLANLNTLELFDNR-LT--TIPN------GAFVYLSKLKELWLRNN-P 147 (440)
T ss_dssp TTTTS-SCSSCCEEECCS-SCCCEECGG-GGTTCSSCCEEECCSSC-CS--SCCT------TTSCSCSSCCEEECCSC-C
T ss_pred HHHhh-CCCCCCEEECCC-CcCCccChh-hccCCccCCEEECCCCc-CC--eeCH------hHhhccccCceeeCCCC-c
Confidence 45577 899999999999 678887444 47899999999999874 44 2221 12337899999999987 4
Q ss_pred cccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
+..++... +..+++|++|++.+|. ..+..+++|+.| .+.+| .+..+| .+..+++|++|++++|. ++.
T Consensus 148 i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L-~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~ 221 (440)
T 3zyj_A 148 IESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL-NLAMC-NLREIP-NLTPLIKLDELDLSGNH-LSA 221 (440)
T ss_dssp CCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE-ECTTS-CCSSCC-CCTTCSSCCEEECTTSC-CCE
T ss_pred ccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhhcccccCee-cCCCC-cCcccc-ccCCCcccCEEECCCCc-cCc
Confidence 66666543 3578999999999873 234556677777 45555 555665 47889999999999985 555
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. +..+.++++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++... +..+++|++|++++++
T Consensus 222 ~~-~~~~~~l~~L~~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 IR-PGSFQGLMHLQKLWMIQSQ-IQVIE-------RNAFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp EC-TTTTTTCTTCCEEECTTCC-CCEEC-------TTSSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred cC-hhhhccCccCCEEECCCCc-eeEEC-------hhhhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 53 4567899999999999875 55554 234567899999999996 888887654 4678999999998876
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=141.83 Aligned_cols=203 Identities=17% Similarity=0.167 Sum_probs=153.5
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|+|++ +.++++.|.. +..+++|++|+++++. +. .++. ..+..+++|++|+++++ .
T Consensus 92 ~~~~~-~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~L~~n~-l~--~~~~------~~~~~l~~L~~L~L~~N-~ 158 (452)
T 3zyi_A 92 ADTFR-HLHHLEVLQLGR-NSIRQIEVGA-FNGLASLNTLELFDNW-LT--VIPS------GAFEYLSKLRELWLRNN-P 158 (452)
T ss_dssp TTTTT-TCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CS--BCCT------TTSSSCTTCCEEECCSC-C
T ss_pred HHHcC-CCCCCCEEECCC-CccCCcChhh-ccCcccCCEEECCCCc-CC--ccCh------hhhcccCCCCEEECCCC-C
Confidence 55677 899999999998 6888875544 7899999999999875 44 2221 12337899999999988 4
Q ss_pred cccccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
+..++... +..+++|++|++++|. ..+..+++|+.| ++.+| .+..+| .+..+++|++|++++|. ++.
T Consensus 159 l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L-~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~ 232 (452)
T 3zyi_A 159 IESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL-NLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPE 232 (452)
T ss_dssp CCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE-ECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSE
T ss_pred cceeCHhH--HhcCCcccEEeCCCCCCccccChhhccCCCCCCEE-ECCCC-cccccc-cccccccccEEECcCCc-Ccc
Confidence 66666543 3578999999999873 234456677777 45555 455664 57889999999999986 454
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+. +..+.++++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++... +..+++|++|++++++
T Consensus 233 ~~-~~~~~~l~~L~~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IR-PGSFHGLSSLKKLWVMNSQ-VSLIE-------RNAFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp EC-GGGGTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred cC-cccccCccCCCEEEeCCCc-CceEC-------HHHhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 42 5568899999999999876 55554 134567899999999996 888887654 4678999999999876
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=137.74 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=162.3
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|+|++ ++++.+ |...+..+++|++|+|+++..++ .++.. .+..+++|+++.+.++.++..++...
T Consensus 30 ~~l~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~------~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVI-QKGAFSGFGDLEKIEISQNDVLE--VIEAD------VFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEES-CCCSEE-CTTSSTTCTTCCEEEEECCTTCC--EECTT------SBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccC-CcCCCc-CHHHHcCCCCCCEEECcCCCCCC--ccChh------HhhcchhhhhhhcccCCcccccCchh
Confidence 6899999999 789986 65557899999999999998766 33322 11267788877776667888887654
Q ss_pred ccccCCCCccEEEEcCCch------hhhhccCCcceeeecCCCCccccCCC-CCCC-CCCCEEEeecCcCcceecchhHH
Q 020667 103 LGILEFPSLKELWISGCPK------FMERYNRTTNILTERGCDHLVDLVPS-STSF-QNLTNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~------~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~l~~~~~l 174 (323)
+..+++|++|++++|.- ......++..+ .+.++..+..++.. +..+ ..++.|+++++. ++.+ +..+
T Consensus 100 --f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l-~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i--~~~~ 173 (350)
T 4ay9_X 100 --FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEI--HNSA 173 (350)
T ss_dssp --BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE-EEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEE--CTTS
T ss_pred --hhhccccccccccccccccCCchhhcccchhhhh-hhccccccccccccchhhcchhhhhhcccccc-ccCC--Chhh
Confidence 35789999999998731 11112222333 35567777777653 3344 468899998874 6766 3444
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
...++|+.|.+.++..++.++. ..+..+++|+.|+++++ +++.++... +.+|+.|.+.++..++.+|.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~-------~~f~~l~~L~~LdLs~N-~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPN-------DVFHGASGPVILDISRT-RIHSLPSYG----LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCT-------TTTTTEECCSEEECTTS-CCCCCCSSS----CTTCCEEECTTCTTCCCCCC
T ss_pred ccccchhHHhhccCCcccCCCH-------HHhccCcccchhhcCCC-CcCccChhh----hccchHhhhccCCCcCcCCC
Confidence 5667899999999999999882 33467899999999996 899998755 88999999999999999996
Q ss_pred CCCCCCCcceeEcc
Q 020667 255 GNSSTPKLHEVQWP 268 (323)
Q Consensus 255 ~~~~~~~L~~L~l~ 268 (323)
+..+++|+.+++.
T Consensus 242 -l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 -LEKLVALMEASLT 254 (350)
T ss_dssp -TTTCCSCCEEECS
T ss_pred -chhCcChhhCcCC
Confidence 6688999999983
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-18 Score=150.96 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=58.0
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccc-cccEEEEccCc-ccc--eeeeccCcccccccccccccCeeeccccccc
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLV-RLEYMEIESCD-RIT--EIVLVDDVAAKDEVITFRELKELKLLNLESL 223 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~-~L~~L~l~~c~-~l~--~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 223 (323)
+..+++|++|++++|..+++...+..+..++ +|++|++++|. .+. .++ ..+..+++|+.|++++|..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--------~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--------TLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--------HHHHHCTTCSEEECTTCTTC
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--------HHHhhCCCCCEEeCCCCCcC
Confidence 4455666666666664444322234455666 66666666664 232 121 12235666666666666544
Q ss_pred ceecCCCccccCCcccEEeecCCCCCcc-cCCCCCCCCCcceeEccCc
Q 020667 224 TSFCSGNCAFKFPSLERLVLDDCPSMKI-FSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 224 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~L~~L~l~~~ 270 (323)
+..... .+..+++|++|++++|..+.. ....+..+++|++|++.|+
T Consensus 236 ~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 236 KNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 432221 134556666666666653321 0112335666666666554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=144.35 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=52.4
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++.+ +.. .+++|++|+++++.
T Consensus 38 ~~~~~-~l~~L~~L~Ls~-n~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l--p~~---------~l~~L~~L~L~~N~- 101 (520)
T 2z7x_B 38 TSDIL-SLSKLRILIISH-NRIQYLDISV-FKFNQELEYLDLSHNK-LVKI--SCH---------PTVNLKHLDLSFNA- 101 (520)
T ss_dssp HHHHT-TCTTCCEEECCS-SCCCEEEGGG-GTTCTTCCEEECCSSC-CCEE--ECC---------CCCCCSEEECCSSC-
T ss_pred hhhcc-ccccccEEecCC-CccCCcChHH-hhcccCCCEEecCCCc-eeec--Ccc---------ccCCccEEeccCCc-
Confidence 34566 788888888888 5677765544 6788888888888763 3322 211 35666666666653
Q ss_pred ccc--ccccCccccCCCCccEEEEcCC
Q 020667 95 FTS--FCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 95 l~~--~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+.. +|.. ++.+++|++|++++|
T Consensus 102 l~~~~~p~~---~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 102 FDALPICKE---FGNMSQLKFLGLSTT 125 (520)
T ss_dssp CSSCCCCGG---GGGCTTCCEEEEEES
T ss_pred cccccchhh---hccCCcceEEEecCc
Confidence 332 2222 235666666666655
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-15 Score=128.56 Aligned_cols=206 Identities=20% Similarity=0.231 Sum_probs=145.8
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++.+.. +..+++|++|+++++. +. .+.. ..+..+++|++|+++++ .+..++...
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~--~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYS-FFSFPELQVLDLSRCE-IQ--TIED------GAYQSLSHLSTLILTGN-PIQSLALGA 95 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTT-TTTCTTCSEEECTTCC-CC--EECT------TTTTTCTTCCEEECTTC-CCCEECTTT
T ss_pred CCccEEECCC-CcccccCHhH-hccccCCcEEECCCCc-CC--ccCH------HHccCCcCCCEEECCCC-ccCccChhh
Confidence 5799999998 6788874433 7889999999999874 44 2221 12337899999999987 455555432
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++|. + ..+++ .+..+++|++|++++|. ++.+..+..+.++++|+
T Consensus 96 --~~~l~~L~~L~l~~n~--------l------------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 96 --FSGLSSLQKLVAVETN--------L------------ASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp --TTTCTTCCEEECTTSC--------C------------CCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCC
T ss_pred --hcCCccccEEECCCCC--------c------------cccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCC
Confidence 2578999999988762 1 11212 36678999999999885 44433356788899999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccC----eeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCC-
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELK----ELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN- 256 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~----~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~- 256 (323)
+|++++|. ++.++. ..+..+++|+ .|+++++ .++.++... ....+|++|++++|. ++.+|...
T Consensus 153 ~L~Ls~N~-l~~~~~-------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~ 220 (276)
T 2z62_A 153 HLDLSSNK-IQSIYC-------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIF 220 (276)
T ss_dssp EEECCSSC-CCEECG-------GGGHHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTT
T ss_pred EEECCCCC-CCcCCH-------HHhhhhhhccccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhHh
Confidence 99999875 555541 2334556666 7888885 788887654 445689999998865 77777654
Q ss_pred CCCCCcceeEccCccccccccc
Q 020667 257 SSTPKLHEVQWPGEARWAWKDD 278 (323)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~~~~ 278 (323)
..+++|++|++ ..+.+.++
T Consensus 221 ~~l~~L~~L~l---~~N~~~c~ 239 (276)
T 2z62_A 221 DRLTSLQKIWL---HTNPWDCS 239 (276)
T ss_dssp TTCCSCCEEEC---CSSCBCCC
T ss_pred cccccccEEEc---cCCccccc
Confidence 67899999999 55555543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=144.30 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc--
Q 020667 147 SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-- 224 (323)
Q Consensus 147 ~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-- 224 (323)
.+..+++|++|++++|. +........+.++++|++|++++|...+..+ ..+..+++|++|++.+|. ++
T Consensus 391 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~-l~~~ 460 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKMAGNS-FQEN 460 (570)
T ss_dssp EEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEECTTCE-EGGG
T ss_pred cccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccch--------hhhhcCCcCcEEECcCCc-Cccc
Confidence 34556666666666654 2222212245566777777777665332222 334567888888888874 43
Q ss_pred eecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 225 SFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 225 ~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
.++. .+..+++|++|++++|...+..|..+..+++|++|++.+
T Consensus 461 ~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 461 FLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp EECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cchh--hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 3543 246788899999988765555577777888999999944
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=144.61 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=71.6
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccc
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDE 205 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 205 (323)
+++|+.| ++.+| .+..+|..+..+++|++|++++|. ++.++ . ...++|+.|++++|. +..++
T Consensus 386 l~~L~~L-~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~--~--~~~~~L~~L~Ls~N~-l~~~~---------- 447 (549)
T 2z81_A 386 LKNLTSL-DISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVK--T--CIPQTLEVLDVSNNN-LDSFS---------- 447 (549)
T ss_dssp CTTCCEE-ECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCC--T--TSCTTCSEEECCSSC-CSCCC----------
T ss_pred CCCCCEE-ECCCC-CCccCChhhcccccccEEECCCCC-ccccc--c--hhcCCceEEECCCCC-hhhhc----------
Confidence 3444444 33333 333455545555555555555553 33321 1 012355555555543 33222
Q ss_pred cccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchh
Q 020667 206 VITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 206 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
..+++|++|+++++ +++.++.. ..+++|++|++++|...+..|..+..+++|+.|++ ..+.+.++.+
T Consensus 448 -~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l---~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC---CSSCBCCCHH
T ss_pred -ccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe---cCCCccCCCc
Confidence 36778888888886 67777652 35788888888876433333444667788888888 5555655544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=144.95 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=51.9
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++ .++. . .+++|++|+++++.
T Consensus 69 ~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~--~lp~-------~--~l~~L~~L~Ls~N~- 132 (562)
T 3a79_B 69 MPDIS-FLSELRVLRLSH-NRIRSLDFHV-FLFNQDLEYLDVSHNR-LQ--NISC-------C--PMASLRHLDLSFND- 132 (562)
T ss_dssp GGGTT-TCTTCCEEECCS-CCCCEECTTT-TTTCTTCCEEECTTSC-CC--EECS-------C--CCTTCSEEECCSSC-
T ss_pred hhhhc-cCCCccEEECCC-CCCCcCCHHH-hCCCCCCCEEECCCCc-CC--ccCc-------c--ccccCCEEECCCCC-
Confidence 34566 777888888877 5677764543 6677788888877653 33 1221 1 46667777776653
Q ss_pred cccccccCccccCCCCccEEEEcCC
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+..++.... +..+++|++|+++++
T Consensus 133 l~~l~~p~~-~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 133 FDVLPVCKE-FGNLTKLTFLGLSAA 156 (562)
T ss_dssp CSBCCCCGG-GGGCTTCCEEEEECS
T ss_pred ccccCchHh-hcccCcccEEecCCC
Confidence 444331111 235666666666665
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=148.34 Aligned_cols=212 Identities=15% Similarity=0.083 Sum_probs=160.9
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|..+. .+++|++|+|++ +.+++..| ++.+++|++|++++|. +..+ + ..++|++|+++++
T Consensus 50 ~~~~~~-~l~~L~~L~Ls~-N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l--~-----------~~~~L~~L~L~~N- 109 (487)
T 3oja_A 50 SAADLA-PFTKLELLNLSS-NVLYETLD---LESLSTLRTLDLNNNY-VQEL--L-----------VGPSIETLHAANN- 109 (487)
T ss_dssp CGGGGT-TCTTCCEEECTT-SCCEEEEE---CTTCTTCCEEECCSSE-EEEE--E-----------ECTTCCEEECCSS-
T ss_pred CHHHHh-CCCCCCEEEeeC-CCCCCCcc---cccCCCCCEEEecCCc-CCCC--C-----------CCCCcCEEECcCC-
Confidence 355677 999999999998 67887644 6899999999999873 4422 1 3479999999987
Q ss_pred ccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCC-CCCCCCEEEeecCcCcc
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSST-SFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~ 166 (323)
.+..++.. .+++|+.|++++| |..++.+++|+.| ++.++...+..|..+. .+++|++|++++|. ++
T Consensus 110 ~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~ 182 (487)
T 3oja_A 110 NISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182 (487)
T ss_dssp CCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC
T ss_pred cCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEE-ECCCCCCCCcChHHHhhhCCcccEEecCCCc-cc
Confidence 46666554 5789999999998 3344556777777 5666655554555554 78999999999986 55
Q ss_pred eecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
.++ . ...+++|+.|++++|. +..++ ..+..+++|+.|+++++ .++.+|.. ...+++|+.|++++|
T Consensus 183 ~~~--~-~~~l~~L~~L~Ls~N~-l~~~~--------~~~~~l~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 183 DVK--G-QVVFAKLKTLDLSSNK-LAFMG--------PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGN 247 (487)
T ss_dssp EEE--C-CCCCTTCCEEECCSSC-CCEEC--------GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTC
T ss_pred ccc--c-cccCCCCCEEECCCCC-CCCCC--------HhHcCCCCccEEEecCC-cCcccchh--hccCCCCCEEEcCCC
Confidence 552 2 3468999999999976 66666 34578899999999995 78888765 367899999999998
Q ss_pred CCC-cccCCCCCCCCCcceeEc
Q 020667 247 PSM-KIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 247 ~~l-~~lp~~~~~~~~L~~L~l 267 (323)
+.. ..+|..+..+++|+.+++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEec
Confidence 766 467776667788887776
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=131.74 Aligned_cols=203 Identities=19% Similarity=0.140 Sum_probs=148.0
Q ss_pred ccccCCcccEEeeecccccceec--cchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLF--SSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~--p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
+. .+++|++|++++ +.++.+. |.. +..+++|++|+++++. +. .++..+. .+++|++|+++++ .+
T Consensus 48 ~~-~l~~L~~L~L~~-n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~-i~--~l~~~~~-------~l~~L~~L~l~~n-~l 113 (306)
T 2z66_A 48 FD-KLTQLTKLSLSS-NGLSFKGCCSQS-DFGTTSLKYLDLSFNG-VI--TMSSNFL-------GLEQLEHLDFQHS-NL 113 (306)
T ss_dssp TT-TCTTCSEEECCS-SCCCEEEEEEHH-HHSCSCCCEEECCSCS-EE--EEEEEEE-------TCTTCCEEECTTS-EE
T ss_pred hh-ccccCCEEECCC-CccCcccCcccc-cccccccCEEECCCCc-cc--cChhhcC-------CCCCCCEEECCCC-cc
Confidence 56 899999999998 5676432 343 5679999999999874 33 2232233 7899999999987 45
Q ss_pred ccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCcc-ccCCCCCCCCCCCEEEeecCcCccee
Q 020667 96 TSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLV-DLVPSSTSFQNLTNLVVSCCKGLKIV 168 (323)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l 168 (323)
..++.... ...+++|++|++++|. ..+..+++|+.| .+.++...+ .+|..+..+++|++|++++|. ++.+
T Consensus 114 ~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 190 (306)
T 2z66_A 114 KQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 190 (306)
T ss_dssp ESSTTTTT-TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE
T ss_pred cccccchh-hhhccCCCEEECCCCcCCccchhhcccCcCCCEE-ECCCCccccccchhHHhhCcCCCEEECCCCC-cCCc
Confidence 65554111 3578999999999983 345556777777 566665444 467788899999999999985 5554
Q ss_pred cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCC-cccEEeecCCC
Q 020667 169 LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFP-SLERLVLDDCP 247 (323)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~-~L~~L~l~~c~ 247 (323)
. +..+..+++|+.|++++|. +..++ ...+..+++|+.|+++++ .++...... ...++ +|++|++++++
T Consensus 191 ~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 191 S-PTAFNSLSSLQVLNMSHNN-FFSLD-------TFPYKCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp C-TTTTTTCTTCCEEECTTSC-CSBCC-------SGGGTTCTTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred C-HHHhcCCCCCCEEECCCCc-cCccC-------hhhccCcccCCEeECCCC-CCcccCHHH-HHhhhccCCEEEccCCC
Confidence 2 4567889999999999986 44444 123467899999999997 666655443 35564 99999999876
Q ss_pred C
Q 020667 248 S 248 (323)
Q Consensus 248 ~ 248 (323)
.
T Consensus 260 ~ 260 (306)
T 2z66_A 260 F 260 (306)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=139.10 Aligned_cols=214 Identities=17% Similarity=0.154 Sum_probs=150.9
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ +.++++.|.. ++.+++|++|+++++. ++ .++.. .+..+++|++|+++++ .+.
T Consensus 71 ~~~-~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~--~~~~~------~~~~l~~L~~L~L~~n-~l~ 137 (353)
T 2z80_A 71 DLQ-RCVNLQALVLTS-NGINTIEEDS-FSSLGSLEHLDLSYNY-LS--NLSSS------WFKPLSSLTFLNLLGN-PYK 137 (353)
T ss_dssp TTT-TCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECCSSC-CS--SCCHH------HHTTCTTCSEEECTTC-CCS
T ss_pred Hhc-cCCCCCEEECCC-CccCccCHhh-cCCCCCCCEEECCCCc-CC--cCCHh------HhCCCccCCEEECCCC-CCc
Confidence 567 899999999998 6788875544 7899999999999874 33 12211 1237899999999987 566
Q ss_pred cccccCccccCCCCccEEEEcCCc-------hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec
Q 020667 97 SFCTSNLGILEFPSLKELWISGCP-------KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL 169 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp-------~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 169 (323)
.++.... +..+++|++|++++|. ..+..+++|+.| ++.++......|..+..+++|++|++++|. ++.++
T Consensus 138 ~l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~ 214 (353)
T 2z80_A 138 TLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-EIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLL 214 (353)
T ss_dssp SSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHH
T ss_pred ccCchhh-hccCCCCcEEECCCCccccccCHHHccCCCCCCEE-ECCCCCcCccCHHHHhccccCCeecCCCCc-cccch
Confidence 6766111 3579999999999983 233445555555 466766555557788899999999999986 45442
Q ss_pred chhHHhccccccEEEEccCcccceeeecc-----------------Ccc-------cccccccccccCeeecccccccce
Q 020667 170 TFSIAKTLVRLEYMEIESCDRITEIVLVD-----------------DVA-------AKDEVITFRELKELKLLNLESLTS 225 (323)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~c~~l~~i~~~~-----------------~~~-------~~~~~~~~~~L~~L~l~~c~~L~~ 225 (323)
...+..+++|+.|++++|.. ..++... ... ....+..+++|+.|+++++ +++.
T Consensus 215 -~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~ 291 (353)
T 2z80_A 215 -EIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKS 291 (353)
T ss_dssp -HHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCC
T ss_pred -hhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCc
Confidence 23456689999999998763 3222100 000 0112356889999999996 7888
Q ss_pred ecCCCccccCCcccEEeecCCCCCc
Q 020667 226 FCSGNCAFKFPSLERLVLDDCPSMK 250 (323)
Q Consensus 226 l~~~~~~~~l~~L~~L~l~~c~~l~ 250 (323)
++... +..+++|++|++++++...
T Consensus 292 i~~~~-~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 292 VPDGI-FDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCTTT-TTTCTTCCEEECCSSCBCC
T ss_pred cCHHH-HhcCCCCCEEEeeCCCccC
Confidence 87643 3578999999999987543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=141.31 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=78.4
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceec-chhHHhccccccEEEEccCcccceeeeccCccccc
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVL-TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKD 204 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~ 204 (323)
+++|+.| ++.++...+.+|..+..+++|++|++++|. ++.++ .+..+..+++|++|++++|.....++..
T Consensus 323 l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------- 393 (520)
T 2z7x_B 323 ISPFLHL-DFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------- 393 (520)
T ss_dssp CCCCCEE-ECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-------
T ss_pred CCcccEE-EeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc-------
Confidence 3445555 466666555577788889999999999886 44331 1345788999999999987744335521
Q ss_pred cccccc----------------------ccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCC
Q 020667 205 EVITFR----------------------ELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPK 261 (323)
Q Consensus 205 ~~~~~~----------------------~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~ 261 (323)
.+..++ +|+.|+++++ +++.++... ..+++|++|++++| .++.+|.. +..+++
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 112334 5555555554 444444332 35666666666664 44456654 445666
Q ss_pred cceeEc
Q 020667 262 LHEVQW 267 (323)
Q Consensus 262 L~~L~l 267 (323)
|++|++
T Consensus 470 L~~L~l 475 (520)
T 2z7x_B 470 LQKIWL 475 (520)
T ss_dssp CCEEEC
T ss_pred ccEEEC
Confidence 666666
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=131.86 Aligned_cols=212 Identities=15% Similarity=0.181 Sum_probs=150.1
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
.. .+++|++|++.+ +.++.+ +. ++.+++|++|+++++. +..+ +.+..+++|++|+++++ .+..
T Consensus 37 ~~-~l~~L~~L~l~~-~~i~~~-~~--l~~l~~L~~L~l~~n~-l~~~----------~~l~~l~~L~~L~L~~n-~l~~ 99 (272)
T 3rfs_A 37 QN-ELNSIDQIIANN-SDIKSV-QG--IQYLPNVRYLALGGNK-LHDI----------SALKELTNLTYLILTGN-QLQS 99 (272)
T ss_dssp HH-HHTTCCEEECTT-SCCCCC-TT--GGGCTTCCEEECTTSC-CCCC----------GGGTTCTTCCEEECTTS-CCCC
T ss_pred cc-cccceeeeeeCC-CCcccc-cc--cccCCCCcEEECCCCC-CCCc----------hhhcCCCCCCEEECCCC-ccCc
Confidence 44 688888898888 456653 44 6788889999888875 3311 12337888899998887 4666
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
++... ...+++|++|++++|. +..+++ .+..+++|++|++++|. ++.++ +..+..
T Consensus 100 ~~~~~--~~~l~~L~~L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~ 155 (272)
T 3rfs_A 100 LPNGV--FDKLTNLKELVLVENQ--------------------LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLP-KGVFDK 155 (272)
T ss_dssp CCTTT--TTTCTTCCEEECTTSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTT
T ss_pred cChhH--hcCCcCCCEEECCCCc--------------------CCccCHHHhccCCCCCEEECCCCc-cCccC-HHHhcc
Confidence 65543 2467888888887762 122323 35678899999999884 55553 344678
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 256 (323)
+++|+.|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++|+..
T Consensus 156 l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~------- 218 (272)
T 3rfs_A 156 LTNLTELDLSYNQ-LQSLP-------EGVFDKLTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYIWLHDNPWD------- 218 (272)
T ss_dssp CTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBC-------
T ss_pred CccCCEEECCCCC-cCccC-------HHHhcCCccCCEEECCCC-cCCccCHHH-HhCCcCCCEEEccCCCcc-------
Confidence 8999999999885 55554 123457899999999996 677776643 467899999999988644
Q ss_pred CCCCCcceeEccCccccccccchhhhceeeeccc
Q 020667 257 SSTPKLHEVQWPGEARWAWKDDLNTTIQKVIFPA 290 (323)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~~~~ 290 (323)
+.+++|+.+++ ..+.+.|.+|.++..+....
T Consensus 219 ~~~~~l~~l~~---~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 219 CTCPGIRYLSE---WINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp CCTTTTHHHHH---HHHHTGGGBBCTTSCBCGGG
T ss_pred ccCcHHHHHHH---HHHhCCCcccCcccccCCCC
Confidence 25678888888 66778888888887666543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=142.43 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=84.6
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc-hhHHhccccccEEEEccCcccceeeecc------
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT-FSIAKTLVRLEYMEIESCDRITEIVLVD------ 198 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~l~~c~~l~~i~~~~------ 198 (323)
++++++| ++.++...+..|..+..+++|++|++++|. ++.++. +..+.++++|+.|++++|.....++...
T Consensus 352 l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFL-NFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCCEE-ECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCceEE-ECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3444454 455555555566677788888888888874 444321 2346778888888888776433244210
Q ss_pred --------Ccccccccccc-cccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEcc
Q 020667 199 --------DVAAKDEVITF-RELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWP 268 (323)
Q Consensus 199 --------~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~ 268 (323)
+.........+ ++|+.|+++++ +++.++... ..+++|++|++++| .++.+|.. +..+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l- 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL- 504 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC-
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe-
Confidence 00000000122 46777777775 666666544 46777788888764 45667776 566777788877
Q ss_pred Ccccccccc
Q 020667 269 GEARWAWKD 277 (323)
Q Consensus 269 ~~~~~~~~~ 277 (323)
..+.|.+
T Consensus 505 --~~N~~~c 511 (562)
T 3a79_B 505 --HDNPWDC 511 (562)
T ss_dssp --CSCCBCC
T ss_pred --cCCCcCC
Confidence 4444444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=140.43 Aligned_cols=212 Identities=15% Similarity=0.082 Sum_probs=158.0
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
|..+. .+++|++|++++ +.+++.. + +..+++|++|+++++. ++.+ + ..++|++|+++++ .
T Consensus 51 ~~~~~-~l~~L~~L~Ls~-n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l--~-----------~~~~L~~L~l~~n-~ 110 (317)
T 3o53_A 51 AADLA-PFTKLELLNLSS-NVLYETL-D--LESLSTLRTLDLNNNY-VQEL--L-----------VGPSIETLHAANN-N 110 (317)
T ss_dssp HHHHT-TCTTCCEEECTT-SCCEEEE-E--ETTCTTCCEEECCSSE-EEEE--E-----------ECTTCCEEECCSS-C
T ss_pred HHHhh-CCCcCCEEECCC-CcCCcch-h--hhhcCCCCEEECcCCc-cccc--c-----------CCCCcCEEECCCC-c
Confidence 45677 999999999998 6788764 3 6899999999999874 3322 1 4578999999887 4
Q ss_pred cccccccCccccCCCCccEEEEcCCc------hhhhhccCCcceeeecCCCCccccCCCC-CCCCCCCEEEeecCcCcce
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNILTERGCDHLVDLVPSS-TSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~~i~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ 167 (323)
+..++.. .+++|++|++++|. ..+..+++|+.| ++.++......+..+ ..+++|++|++++|. ++.
T Consensus 111 l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 111 ISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred cCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEE-ECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 6665544 57889999999882 234446666666 466654433333333 368999999999986 555
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
++ . ...+++|+.|++++|. +..++ ..+..+++|+.|+++++ .++.++.. ...+++|++|++++++
T Consensus 184 ~~--~-~~~l~~L~~L~Ls~N~-l~~l~--------~~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 184 VK--G-QVVFAKLKTLDLSSNK-LAFMG--------PEFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EE--C-CCCCTTCCEEECCSSC-CCEEC--------GGGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCC
T ss_pred cc--c-ccccccCCEEECCCCc-CCcch--------hhhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCC
Confidence 52 2 3358999999999975 66665 33568899999999996 78888764 3678999999999987
Q ss_pred CC-cccCCCCCCCCCcceeEcc
Q 020667 248 SM-KIFSEGNSSTPKLHEVQWP 268 (323)
Q Consensus 248 ~l-~~lp~~~~~~~~L~~L~l~ 268 (323)
.. ..+|..+..+++|+.+++.
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCcCHHHHHhccccceEEECC
Confidence 76 5777777788889988884
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-15 Score=128.46 Aligned_cols=199 Identities=19% Similarity=0.189 Sum_probs=152.3
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. ++++++++++++ ++++.+ |.. -.++++.|+++++. +..+ .+.. +..+++|++|+++++ .+..
T Consensus 6 ~~-~l~~l~~l~~~~-~~l~~i-p~~---~~~~l~~L~L~~N~-l~~~-~~~~-------~~~l~~L~~L~L~~n-~l~~ 69 (290)
T 1p9a_G 6 VS-KVASHLEVNCDK-RNLTAL-PPD---LPKDTTILHLSENL-LYTF-SLAT-------LMPYTRLTQLNLDRA-ELTK 69 (290)
T ss_dssp EE-CSTTCCEEECTT-SCCSSC-CSC---CCTTCCEEECTTSC-CSEE-EGGG-------GTTCTTCCEEECTTS-CCCE
T ss_pred cc-ccCCccEEECCC-CCCCcC-CCC---CCCCCCEEEcCCCc-CCcc-CHHH-------hhcCCCCCEEECCCC-ccCc
Confidence 55 899999999998 778875 654 24789999999876 3422 1222 237899999999987 5666
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
++.. ..+++|++|+++++. +..+|..+..+++|++|++++|. ++.++ +..+.++
T Consensus 70 ~~~~----~~l~~L~~L~Ls~N~--------------------l~~l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l 123 (290)
T 1p9a_G 70 LQVD----GTLPVLGTLDLSHNQ--------------------LQSLPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGL 123 (290)
T ss_dssp EECC----SCCTTCCEEECCSSC--------------------CSSCCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTC
T ss_pred ccCC----CCCCcCCEEECCCCc--------------------CCcCchhhccCCCCCEEECCCCc-CcccC-HHHHcCC
Confidence 6654 378999999998862 22455567788999999999885 55553 3457889
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|++|++++|. +..++ ...+..+++|+.|+++++ +++.++... +..+++|++|++++ +.++.+|.++.
T Consensus 124 ~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~-N~l~~ip~~~~ 192 (290)
T 1p9a_G 124 GELQELYLKGNE-LKTLP-------PGLLTPTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQE-NSLYTIPKGFF 192 (290)
T ss_dssp TTCCEEECTTSC-CCCCC-------TTTTTTCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CCCCEEECCCCC-CCccC-------hhhcccccCCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCC-CcCCccChhhc
Confidence 999999999875 55665 123457899999999995 788887754 45689999999988 46789999998
Q ss_pred CCCCcceeEccC
Q 020667 258 STPKLHEVQWPG 269 (323)
Q Consensus 258 ~~~~L~~L~l~~ 269 (323)
..++|+.+++.|
T Consensus 193 ~~~~L~~l~L~~ 204 (290)
T 1p9a_G 193 GSHLLPFAFLHG 204 (290)
T ss_dssp TTCCCSEEECCS
T ss_pred ccccCCeEEeCC
Confidence 899999999954
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-15 Score=137.45 Aligned_cols=40 Identities=8% Similarity=0.155 Sum_probs=25.6
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
+..+. .+++|++|++++ +.++++ |. ++.+++|++|+++++
T Consensus 35 ~~~~~-~l~~L~~L~Ls~-n~l~~~-~~--l~~l~~L~~L~Ls~n 74 (457)
T 3bz5_A 35 TISEE-QLATLTSLDCHN-SSITDM-TG--IEKLTGLTKLICTSN 74 (457)
T ss_dssp EEEHH-HHTTCCEEECCS-SCCCCC-TT--GGGCTTCSEEECCSS
T ss_pred ccChh-HcCCCCEEEccC-CCcccC-hh--hcccCCCCEEEccCC
Confidence 33455 677777777776 456664 53 567777777777655
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-15 Score=128.45 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=142.9
Q ss_pred cEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccc
Q 020667 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGI 105 (323)
Q Consensus 26 ~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 105 (323)
++++.++ .+++.+ |.. ..++|++|+++++. +. .++. ..+..+++|++|+++++ .+..+.... +
T Consensus 14 ~~~~c~~-~~l~~i-p~~---~~~~l~~L~l~~n~-i~--~~~~------~~~~~~~~L~~L~l~~n-~l~~~~~~~--~ 76 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAV-PVG---IPAASQRIFLHGNR-IS--HVPA------ASFRACRNLTILWLHSN-VLARIDAAA--F 76 (285)
T ss_dssp CEEECCS-SCCSSC-CTT---CCTTCSEEECTTSC-CC--EECT------TTTTTCTTCCEEECCSS-CCCEECTTT--T
T ss_pred eEEEcCc-CCcccC-CcC---CCCCceEEEeeCCc-CC--ccCH------HHcccCCCCCEEECCCC-ccceeCHhh--c
Confidence 5677776 667764 653 46799999999875 44 2221 12337899999999987 466664332 3
Q ss_pred cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCcccc-CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEE
Q 020667 106 LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDL-VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYME 184 (323)
Q Consensus 106 ~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 184 (323)
..+++|++|++++|+ .+..+ +..+..+++|++|++++|. ++.+. +..+.++++|++|+
T Consensus 77 ~~l~~L~~L~l~~n~-------------------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 77 TGLALLEQLDLSDNA-------------------QLRSVDPATFHGLGRLHTLHLDRCG-LQELG-PGLFRGLAALQYLY 135 (285)
T ss_dssp TTCTTCCEEECCSCT-------------------TCCCCCTTTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEE
T ss_pred CCccCCCEEeCCCCC-------------------CccccCHHHhcCCcCCCEEECCCCc-CCEEC-HhHhhCCcCCCEEE
Confidence 478999999988763 12223 3456788999999999986 44442 44578899999999
Q ss_pred EccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcce
Q 020667 185 IESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHE 264 (323)
Q Consensus 185 l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~ 264 (323)
+++|. +..++ ...+..+++|++|+++++ +++.++... +..+++|++|++++|...+..|..+..+++|++
T Consensus 136 l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 205 (285)
T 1ozn_A 136 LQDNA-LQALP-------DDTFRDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (285)
T ss_dssp CCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCc-ccccC-------HhHhccCCCccEEECCCC-cccccCHHH-hcCccccCEEECCCCcccccCHhHccCcccccE
Confidence 99975 45554 123467899999999996 788887653 467899999999997655556888889999999
Q ss_pred eEccC
Q 020667 265 VQWPG 269 (323)
Q Consensus 265 L~l~~ 269 (323)
|++.+
T Consensus 206 L~l~~ 210 (285)
T 1ozn_A 206 LYLFA 210 (285)
T ss_dssp EECCS
T ss_pred eeCCC
Confidence 99944
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-15 Score=143.57 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=116.0
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|++++ +.++++ |...++.+++|++|+++++..-. . .+..+..+++|++|+++++ .+..++...
T Consensus 25 ~~l~~L~Ls~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~--~-------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRL-PAANFTRYSQLTSLDVGFNTISK--L-------EPELCQKLPMLKVLNLQHN-ELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCS-SCCCCC-CGGGGGGGTTCSEEECCSSCCCC--C-------CTTHHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCcEEECCC-CCCCCc-CHHHHhCCCcCcEEECCCCccCc--c-------CHHHHhcccCcCEEECCCC-ccCccChhh
Confidence 5677777776 456664 33335667777777777653211 1 1112225666666666665 345554432
Q ss_pred ccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHH--
Q 020667 103 LGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA-- 174 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l-- 174 (323)
+..+++|++|++++| |..++.+++|++| ++.+|......+..+..+++|++|++++|. ++.+. +..+
T Consensus 93 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~ 167 (680)
T 1ziw_A 93 --FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL-DLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALK-SEELDI 167 (680)
T ss_dssp --TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE-ECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBC-HHHHGG
T ss_pred --hccCCCCCEEECCCCccCccChhHccccCCCCEE-ECCCCcccccCchhhcccccCCEEEccCCc-ccccC-HHHhhc
Confidence 235666666666665 2334445555555 455554433334445566666666666654 33321 2222
Q ss_pred hccccccEEEEccCcccceeeec-----------------------------------------cCc---ccccccccc-
Q 020667 175 KTLVRLEYMEIESCDRITEIVLV-----------------------------------------DDV---AAKDEVITF- 209 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~-----------------------------------------~~~---~~~~~~~~~- 209 (323)
..+++|+.|++++|. +..++.. ... .....+..+
T Consensus 168 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 168 FANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred cccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 233566666666553 2222110 000 000111222
Q ss_pred -cccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEcc
Q 020667 210 -RELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWP 268 (323)
Q Consensus 210 -~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~ 268 (323)
++|+.|+++++ .++.++... +..+++|++|++++|...+..|..+..+++|+.|++.
T Consensus 247 ~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 247 WTNLTMLDLSYN-NLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp GSCCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cCCCCEEECCCC-CcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 23666666664 455554332 3556777777777765555556566677777777774
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-15 Score=146.01 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=87.3
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccc-cc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSF-CT 100 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~ 100 (323)
.++|++|+|++ +.++++.|.. +.++++|++|++++|.... .+. +..+..+++|++|+++++. +..+ +.
T Consensus 23 p~~l~~LdLs~-N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~--~i~------~~~f~~L~~L~~L~Ls~N~-l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSF-NYIRTVTASS-FPFLEQLQLLELGSQYTPL--TID------KEAFRNLPNLRILDLGSSK-IYFLHPD 91 (844)
T ss_dssp CTTCCEEEEES-CCCCEECSSS-CSSCCSCSEEEECTTCCCC--EEC------TTTTSSCTTCCEEECTTCC-CCEECTT
T ss_pred CCCcCEEECCC-CcCCccChhH-CcccccCeEEeCCCCCCcc--ccC------HHHhcCCCCCCEEECCCCc-CcccCHh
Confidence 58999999998 6788876655 7899999999999986554 221 1223378888888888874 4444 33
Q ss_pred cCccccCCCCccEEEEcCCc------h--hhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCc
Q 020667 101 SNLGILEFPSLKELWISGCP------K--FMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCK 163 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp------~--~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 163 (323)
. +..+++|++|++++|. . .+..+++|++| ++.++...+..+ ..+.++++|++|++++|.
T Consensus 92 ~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L-~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 92 A---FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL-DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp S---SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE-EEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred H---ccCCcccCEeeCcCCCCCcccccCccccccCCCCEE-ECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 3 3478888888888872 1 13445566666 456654433322 346778888888888774
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=134.69 Aligned_cols=220 Identities=16% Similarity=0.228 Sum_probs=115.6
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEe----------cCCCCceEEeeccccccCCCccccCCcCEE
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIV----------ECPVLKELIVMDNQEERKNNNVMFPQLQYL 87 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls----------~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L 87 (323)
+. .+++|++|++++ +.++++ +. ++.+++|+.|+++ +++.++.+.+..+.-...+.+..+++|++|
T Consensus 130 ~~-~l~~L~~L~l~~-n~l~~~-~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 204 (466)
T 1o6v_A 130 LK-NLTNLNRLELSS-NTISDI-SA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 204 (466)
T ss_dssp GT-TCTTCSEEEEEE-EEECCC-GG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred Hc-CCCCCCEEECCC-CccCCC-hh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEE
Confidence 55 788888888887 345553 43 4556666666554 234444444433321111234456666666
Q ss_pred ecccccccccccccCccccCCCCccEEEEcCCc----hhhhhccCCcceeeecCCC---------------------Ccc
Q 020667 88 KMFNLENFTSFCTSNLGILEFPSLKELWISGCP----KFMERYNRTTNILTERGCD---------------------HLV 142 (323)
Q Consensus 88 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp----~~~~~l~~L~~L~~i~~~~---------------------~l~ 142 (323)
+++++. +..++.. ..+++|++|++++|. ..+..+++|+.| ++.+|. .+.
T Consensus 205 ~l~~n~-l~~~~~~----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 205 IATNNQ-ISDITPL----GILTNLDELSLNGNQLKDIGTLASLTNLTDL-DLANNQISNLAPLSGLTKLTELKLGANQIS 278 (466)
T ss_dssp ECCSSC-CCCCGGG----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEE-ECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred EecCCc-ccccccc----cccCCCCEEECCCCCcccchhhhcCCCCCEE-ECCCCccccchhhhcCCCCCEEECCCCccC
Confidence 666653 3332221 235555555555552 112223333333 222222 222
Q ss_pred ccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccc
Q 020667 143 DLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLES 222 (323)
Q Consensus 143 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 222 (323)
.+++ +..+++|+.|++++|. ++.++ . +..+++|+.|++++|. +..++ .+..+++|+.|++++| .
T Consensus 279 ~~~~-~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~ 342 (466)
T 1o6v_A 279 NISP-LAGLTALTNLELNENQ-LEDIS--P-ISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN-K 342 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSC-CSCCG--G-GGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-C
T ss_pred cccc-ccCCCccCeEEcCCCc-ccCch--h-hcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-c
Confidence 2322 4455556666665553 33331 1 4556666666666653 33322 1346777777777776 5
Q ss_pred cceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 223 LTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 223 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
++.++ ....+++|++|++++|+..+..| +..+++|+.|++.+
T Consensus 343 l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 343 VSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp CCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred cCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 65553 23567888888887776544444 55778888888844
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=135.57 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=35.3
Q ss_pred cccccCeeecccccccceecCCC------ccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 208 TFRELKELKLLNLESLTSFCSGN------CAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~------~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
.+++|+.|++++|..+..++... ....+++|++|+++++ .++.++ +..+++|+.|++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEEC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEEC
Confidence 45677777777776555554321 1234566777777664 344453 667888888888
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.2e-16 Score=136.19 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=25.0
Q ss_pred ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 209 FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 209 ~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++|++|+++++ +++.++... .++|++|+++++ .++.+|. +..+++|++|++
T Consensus 252 l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQVPKGL----PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp CTTCCEEECTTS-CCSSCCSSC----CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEEC
T ss_pred cCCCCEEECCCC-ccChhhhhc----cCCceEEECCCC-CCCCChh-HhhCCCCCEEec
Confidence 455555555553 444444322 145555555443 3444444 445555555555
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=133.69 Aligned_cols=232 Identities=15% Similarity=0.084 Sum_probs=110.9
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC-----------CCceEEeeccc-cccCCCccccCCc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP-----------VLKELIVMDNQ-EERKNNNVMFPQL 84 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~-----------~l~~l~~~~~~-~~~~~~~~~l~~L 84 (323)
++. .+++|++|++++ +.++++ |.. .++|++|+++++. .++.+.+..+. ...+. ..++|
T Consensus 148 ~~~-~l~~L~~L~l~~-N~l~~l-p~~----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~---~~~~L 217 (454)
T 1jl5_A 148 ELQ-NSSFLKIIDVDN-NSLKKL-PDL----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD---LPLSL 217 (454)
T ss_dssp CCT-TCTTCCEEECCS-SCCSCC-CCC----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC---CCTTC
T ss_pred ccC-CCCCCCEEECCC-CcCccc-CCC----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCC---CcCcc
Confidence 466 788888888887 466663 542 2467777666542 22222222211 11111 22466
Q ss_pred CEEecccccccccccccCccccCCCCccEEEEcCCchh--hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecC
Q 020667 85 QYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKF--MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCC 162 (323)
Q Consensus 85 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~--~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c 162 (323)
++|+++++ .+..++. +..+++|++|++++|.-. -..+++++.| ++.+|. +..+|.. +++|++|++++|
T Consensus 218 ~~L~l~~n-~l~~lp~----~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L-~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 218 ESIVAGNN-ILEELPE----LQNLPFLTTIYADNNLLKTLPDLPPSLEAL-NVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp CEEECCSS-CCSSCCC----CTTCTTCCEEECCSSCCSSCCSCCTTCCEE-ECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred cEEECcCC-cCCcccc----cCCCCCCCEEECCCCcCCcccccccccCEE-ECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 77777666 4445552 246788888888877210 0112445555 344432 3334432 356666666665
Q ss_pred cCcceecc-hhH-------------Hhcc-ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 163 KGLKIVLT-FSI-------------AKTL-VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 163 ~~l~~l~~-~~~-------------l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
. ++.++. +.. +..+ ++|+.|++++|. +..++ ..+++|+.|+++++ +++.++
T Consensus 288 ~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp-----------~~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 288 I-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELP-----------ALPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp C-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCC
T ss_pred c-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-ccccc-----------ccCCcCCEEECCCC-cccccc
Confidence 3 333210 000 0111 355566665543 33343 23678889998886 677776
Q ss_pred CCCccccCCcccEEeecCCCCCc--ccCCCCCCC-------------CCcceeEccCcccccccc--chhhhceeeeccc
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMK--IFSEGNSST-------------PKLHEVQWPGEARWAWKD--DLNTTIQKVIFPA 290 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~-------------~~L~~L~l~~~~~~~~~~--~l~~~l~~l~~~~ 290 (323)
. .+++|++|++++|+..+ .+|.++..+ ++|+.|++ +.+.+.+ .+|.+++.+.+.+
T Consensus 354 ~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l---s~N~l~~~~~iP~sl~~L~~~~ 425 (454)
T 1jl5_A 354 E-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV---ETNPLREFPDIPESVEDLRMNS 425 (454)
T ss_dssp C-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred c-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC---CCCcCCccccchhhHhheeCcC
Confidence 5 37889999998876655 677777655 78999999 5566665 8888888887765
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=135.34 Aligned_cols=231 Identities=14% Similarity=0.136 Sum_probs=154.8
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|++++ +.+.+..+. +..+++|++|++++|. +... ..+..+..+++|++|++++|..-...+..
T Consensus 70 ~~l~~L~l~~-n~l~~~~~~--~~~~~~L~~L~L~~~~-l~~~-------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~- 137 (336)
T 2ast_B 70 QGVIAFRCPR-SFMDQPLAE--HFSPFRVQHMDLSNSV-IEVS-------TLHGILSQCSKLQNLSLEGLRLSDPIVNT- 137 (336)
T ss_dssp TTCSEEECTT-CEECSCCCS--CCCCBCCCEEECTTCE-ECHH-------HHHHHHTTBCCCSEEECTTCBCCHHHHHH-
T ss_pred ccceEEEcCC-ccccccchh--hccCCCCCEEEccCCC-cCHH-------HHHHHHhhCCCCCEEeCcCcccCHHHHHH-
Confidence 6777788777 566665444 4578888888888774 2200 01122337899999999998532233433
Q ss_pred ccccCCCCccEEEEcCCch--------hhhhccCCcceeeecCCCCccc--cCCCCCCCC-CCCEEEeecCc-Ccceecc
Q 020667 103 LGILEFPSLKELWISGCPK--------FMERYNRTTNILTERGCDHLVD--LVPSSTSFQ-NLTNLVVSCCK-GLKIVLT 170 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~--------~~~~l~~L~~L~~i~~~~~l~~--l~~~~~~l~-~L~~L~l~~c~-~l~~l~~ 170 (323)
...+++|++|++++|.. .+..+++|++| .+.+|..+.. ++..+..++ +|++|++++|. .+++-..
T Consensus 138 --l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 138 --LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL-NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp --HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE-ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred --HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE-cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 24789999999999942 24457788888 6888855553 455567788 99999999996 4543333
Q ss_pred hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCc
Q 020667 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK 250 (323)
Q Consensus 171 ~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 250 (323)
+..+..+++|++|++++|..++... ...+..+++|++|++++|..+...... ....+++|++|++++|
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~---- 282 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDC-------FQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI---- 282 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS----
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHH-------HHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc----
Confidence 5567889999999999998554322 134467899999999999755433221 2456999999999998
Q ss_pred ccCCCC-CCC-CCcceeEccCccccccccchhhhce
Q 020667 251 IFSEGN-SST-PKLHEVQWPGEARWAWKDDLNTTIQ 284 (323)
Q Consensus 251 ~lp~~~-~~~-~~L~~L~l~~~~~~~~~~~l~~~l~ 284 (323)
++... ..+ .+++.|++ ..+.+.+..|+.+.
T Consensus 283 -i~~~~~~~l~~~l~~L~l---~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPDGTLQLLKEALPHLQI---NCSHFTTIARPTIG 314 (336)
T ss_dssp -SCTTCHHHHHHHSTTSEE---SCCCSCCTTCSSCS
T ss_pred -cCHHHHHHHHhhCcceEE---ecccCccccCCccc
Confidence 44321 122 34666777 55666666665554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=126.72 Aligned_cols=187 Identities=14% Similarity=0.239 Sum_probs=132.3
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++| .++.+ |. +..+++|++|++++|. +.. ++. +..+++|++|+++++. +..++.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l-~~--~~~l~~L~~L~L~~n~-i~~--~~~--------~~~l~~L~~L~L~~n~-l~~~~~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTI-EG--VQYLNNLIGLELKDNQ-ITD--LAP--------LKNLTKITELELSGNP-LKNVSA 102 (308)
T ss_dssp HHHTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECCSSC-CCC--CGG--------GTTCCSCCEEECCSCC-CSCCGG
T ss_pred HcCCcCEEEeeCC-CccCc-hh--hhccCCCCEEEccCCc-CCC--Chh--------HccCCCCCEEEccCCc-CCCchh
Confidence 6889999999984 67764 64 7889999999999874 331 111 3478999999999884 666642
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|++|++++|. + ..++ .+..+++|++|++++|. ++.++ . +..+++|
T Consensus 103 ----~~~l~~L~~L~l~~n~--------l------------~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L 153 (308)
T 1h6u_A 103 ----IAGLQSIKTLDLTSTQ--------I------------TDVT-PLAGLSNLQVLYLDLNQ-ITNIS--P-LAGLTNL 153 (308)
T ss_dssp ----GTTCTTCCEEECTTSC--------C------------CCCG-GGTTCTTCCEEECCSSC-CCCCG--G-GGGCTTC
T ss_pred ----hcCCCCCCEEECCCCC--------C------------CCch-hhcCCCCCCEEECCCCc-cCcCc--c-ccCCCCc
Confidence 3478999999998872 1 1122 25677888888888874 45442 2 6778888
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++++|. +..++ . +..+++|+.|+++++ .++.++. ...+++|++|++++| .+..++. +..++
T Consensus 154 ~~L~l~~n~-l~~~~--------~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 154 QYLSIGNAQ-VSDLT--------P-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-LANTS 217 (308)
T ss_dssp CEEECCSSC-CCCCG--------G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCT
T ss_pred cEEEccCCc-CCCCh--------h-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCcccc-ccCCC
Confidence 888888874 45544 1 457788888888885 5666653 356888888888775 4555553 56788
Q ss_pred CcceeEcc
Q 020667 261 KLHEVQWP 268 (323)
Q Consensus 261 ~L~~L~l~ 268 (323)
+|+.|++.
T Consensus 218 ~L~~L~l~ 225 (308)
T 1h6u_A 218 NLFIVTLT 225 (308)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEcc
Confidence 88888883
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-14 Score=120.23 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=142.3
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
..+.+++++++ ++++.+ |.. -.++|+.|+++++. +. .++ +..+..+++|++|+++++ .+..++..
T Consensus 15 ~~~~~~l~~~~-~~l~~i-p~~---~~~~l~~L~l~~n~-l~--~~~------~~~~~~l~~L~~L~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 15 NNNKNSVDCSS-KKLTAI-PSN---IPADTKKLDLQSNK-LS--SLP------SKAFHRLTKLRLLYLNDN-KLQTLPAG 79 (270)
T ss_dssp ETTTTEEECTT-SCCSSC-CSC---CCTTCSEEECCSSC-CS--CCC------TTSSSSCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCCCEEEccC-CCCCcc-CCC---CCCCCCEEECcCCC-CC--eeC------HHHhcCCCCCCEEECCCC-ccCeeChh
Confidence 35688999988 778874 654 23689999999875 33 111 123347899999999987 56667665
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. +..+++|++|++++|. +..+++ .+..+++|++|+++++. ++.++ +..+..+++|
T Consensus 80 ~--~~~l~~L~~L~l~~n~--------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 135 (270)
T 2o6q_A 80 I--FKELKNLETLWVTDNK--------------------LQALPIGVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKL 135 (270)
T ss_dssp T--TSSCTTCCEEECCSSC--------------------CCCCCTTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred h--hcCCCCCCEEECCCCc--------------------CCcCCHhHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCC
Confidence 3 2468999999998762 122222 34678899999999875 55543 3456789999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSST 259 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~ 259 (323)
++|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++| .++.+|.. +..+
T Consensus 136 ~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 204 (270)
T 2o6q_A 136 TYLSLGYNE-LQSLP-------KGVFDKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNN-QLKRVPEGAFDSL 204 (270)
T ss_dssp CEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred CEEECCCCc-CCccC-------HhHccCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCC-cCCcCCHHHhccc
Confidence 999999875 55555 123467899999999996 687777643 456899999999886 56667764 5678
Q ss_pred CCcceeEccC
Q 020667 260 PKLHEVQWPG 269 (323)
Q Consensus 260 ~~L~~L~l~~ 269 (323)
++|+.|++.+
T Consensus 205 ~~L~~L~l~~ 214 (270)
T 2o6q_A 205 EKLKMLQLQE 214 (270)
T ss_dssp TTCCEEECCS
T ss_pred cCCCEEEecC
Confidence 9999999944
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=137.45 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=62.7
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNS 257 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 257 (323)
++|+.|++++| .+..++ ..+++|+.|+++++ +++.++. .+++|++|++++| .++.+|..+.
T Consensus 221 ~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp TTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred CCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHh
Confidence 55666666655 344444 35678888888886 7777765 3788999999886 5678998888
Q ss_pred CCCCcceeEccCccccccccchhhhceee
Q 020667 258 STPKLHEVQWPGEARWAWKDDLNTTIQKV 286 (323)
Q Consensus 258 ~~~~L~~L~l~~~~~~~~~~~l~~~l~~l 286 (323)
.+++|+.|++ ..+.+.+..+..+..+
T Consensus 282 ~l~~L~~L~L---~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 282 HLSSETTVNL---EGNPLSERTLQALREI 307 (622)
T ss_dssp GSCTTCEEEC---CSCCCCHHHHHHHHHH
T ss_pred hccccCEEEe---cCCCCCCcCHHHHHhc
Confidence 8999999999 6666666666655443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-14 Score=119.27 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=133.4
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|+++++..++.+ +...+..+++|++|++++|..++ .++.. .+..+++|++|+++++ .+.
T Consensus 50 ~~~-~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~--~i~~~------~f~~l~~L~~L~l~~n-~l~ 118 (239)
T 2xwt_C 50 AFS-NLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLT--YIDPD------ALKELPLLKFLGIFNT-GLK 118 (239)
T ss_dssp TTT-TCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCC--EECTT------SEECCTTCCEEEEEEE-CCC
T ss_pred Hcc-CCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCee--EcCHH------HhCCCCCCCEEeCCCC-CCc
Confidence 566 8999999999995448886 44447899999999999977787 33321 2237899999999987 466
Q ss_pred cccccCccccCCCCcc---EEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCC-EEEeecCcCcceecch
Q 020667 97 SFCTSNLGILEFPSLK---ELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLT-NLVVSCCKGLKIVLTF 171 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~---~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~l~~~ 171 (323)
.++. . ..+++|+ +|++++|+ .+..+++ .+..+++|+ +|+++++. ++.++.
T Consensus 119 ~lp~-~---~~l~~L~~L~~L~l~~N~-------------------~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~- 173 (239)
T 2xwt_C 119 MFPD-L---TKVYSTDIFFILEITDNP-------------------YMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG- 173 (239)
T ss_dssp SCCC-C---TTCCBCCSEEEEEEESCT-------------------TCCEECTTTTTTTBSSEEEEECCSCC-CCEECT-
T ss_pred cccc-c---ccccccccccEEECCCCc-------------------chhhcCcccccchhcceeEEEcCCCC-CcccCH-
Confidence 6665 2 3667777 88888763 2223333 366788999 99999875 556632
Q ss_pred hHHhccccccEEEEccCcccceeeeccCcccccccccc-cccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 172 SIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITF-RELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 172 ~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
..+.. ++|+.|++++|..++.++. ..+..+ ++|+.|++++ ..++.++.. .+++|++|++.++..
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence 22333 8999999999876877762 234567 8999999999 478888765 489999999988764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-15 Score=132.33 Aligned_cols=236 Identities=15% Similarity=0.038 Sum_probs=145.0
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
..++|++|++++ +.+ . +|..+... |+.|+++++. +....++...+........+++|++|+++++.--+.++.
T Consensus 41 ~~~~L~~l~l~~-n~l-~-~p~~~~~~---L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRV-DTE-A-DLGQFTDI---IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHC-CTT-C-CCHHHHHH---HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEeecc-ccc-c-cHHHHHHH---Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 566777777777 445 3 46553222 6677666542 221122211100000001367788888887743334444
Q ss_pred cCccccCCCCccEEEEcCC-----chhhhhc-----cCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc
Q 020667 101 SNLGILEFPSLKELWISGC-----PKFMERY-----NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT 170 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~c-----p~~~~~l-----~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 170 (323)
... ...+++|++|++++| |..++.+ ++|++| ++.++......+..+..+++|++|++++|...+....
T Consensus 114 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL-SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSS-SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEE-EEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHH-HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEE-EeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 421 136778888888877 3344444 667776 5666554443446788999999999999975544322
Q ss_pred hhHH--hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 171 FSIA--KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 171 ~~~l--~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+..+ ..+++|++|++++|. +..++.. ....+..+++|++|+++++ .++..........+++|++|++++| .
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~ 264 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAG-METPSGV----CSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-G 264 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSC-CCCHHHH----HHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-C
T ss_pred HHHHHhccCCCCCEEECCCCc-CcchHHH----HHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-c
Confidence 3333 789999999999985 4432200 0111235689999999996 6776543222345789999999886 5
Q ss_pred CcccCCCCCCCCCcceeEccCcccccccc
Q 020667 249 MKIFSEGNSSTPKLHEVQWPGEARWAWKD 277 (323)
Q Consensus 249 l~~lp~~~~~~~~L~~L~l~~~~~~~~~~ 277 (323)
++.+|..+. ++|++|++ +.+.+.+
T Consensus 265 l~~ip~~~~--~~L~~L~L---s~N~l~~ 288 (312)
T 1wwl_A 265 LKQVPKGLP--AKLSVLDL---SYNRLDR 288 (312)
T ss_dssp CSSCCSSCC--SEEEEEEC---CSSCCCS
T ss_pred cChhhhhcc--CCceEEEC---CCCCCCC
Confidence 678998775 89999999 4454443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=123.39 Aligned_cols=191 Identities=15% Similarity=0.119 Sum_probs=139.7
Q ss_pred cccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccc
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLEN 94 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 94 (323)
..++. .+++|++|++++ +.++++ +. ++.+++|++|++++|. +. .++ +..+..+++|++|+++++ .
T Consensus 56 ~~~l~-~l~~L~~L~l~~-n~l~~~-~~--l~~l~~L~~L~L~~n~-l~--~~~------~~~~~~l~~L~~L~L~~n-~ 120 (272)
T 3rfs_A 56 VQGIQ-YLPNVRYLALGG-NKLHDI-SA--LKELTNLTYLILTGNQ-LQ--SLP------NGVFDKLTNLKELVLVEN-Q 120 (272)
T ss_dssp CTTGG-GCTTCCEEECTT-SCCCCC-GG--GTTCTTCCEEECTTSC-CC--CCC------TTTTTTCTTCCEEECTTS-C
T ss_pred ccccc-cCCCCcEEECCC-CCCCCc-hh--hcCCCCCCEEECCCCc-cC--ccC------hhHhcCCcCCCEEECCCC-c
Confidence 34577 899999999999 567774 54 7899999999999884 33 111 112347899999999998 4
Q ss_pred cccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhH
Q 020667 95 FTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSI 173 (323)
Q Consensus 95 l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~ 173 (323)
+..++... +..+++|++|++++|. +..+++ .+..+++|++|++++|. ++.++ +..
T Consensus 121 l~~~~~~~--~~~l~~L~~L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~ 176 (272)
T 3rfs_A 121 LQSLPDGV--FDKLTNLTYLNLAHNQ--------------------LQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-EGV 176 (272)
T ss_dssp CCCCCTTT--TTTCTTCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTT
T ss_pred CCccCHHH--hccCCCCCEEECCCCc--------------------cCccCHHHhccCccCCEEECCCCC-cCccC-HHH
Confidence 66666543 2478999999998862 122333 25678999999999985 55553 345
Q ss_pred HhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 174 AKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 174 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+..+++|+.|++++|. +..++ ...+..+++|+.|++.+++ +. ..+++|++|+++.+...+.+|
T Consensus 177 ~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N~-~~--------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQ-LKSVP-------DGVFDRLTSLQYIWLHDNP-WD--------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSSC-BC--------CCTTTTHHHHHHHHHTGGGBB
T ss_pred hcCCccCCEEECCCCc-CCccC-------HHHHhCCcCCCEEEccCCC-cc--------ccCcHHHHHHHHHHhCCCccc
Confidence 6789999999999986 55554 1334678999999999973 21 347889999998887778899
Q ss_pred CCCCCCCC
Q 020667 254 EGNSSTPK 261 (323)
Q Consensus 254 ~~~~~~~~ 261 (323)
.++..++.
T Consensus 240 ~~~~~~~~ 247 (272)
T 3rfs_A 240 NSAGSVAP 247 (272)
T ss_dssp CTTSCBCG
T ss_pred CcccccCC
Confidence 87755543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=118.93 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=138.7
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
..+. .+++|++|++++ +.++++.+. .+..+++|++|+++++.. . .+. +..+..+++|++|+++++ .+
T Consensus 46 ~~~~-~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~l-~--~~~------~~~~~~l~~L~~L~l~~n-~l 112 (276)
T 2z62_A 46 YSFF-SFPELQVLDLSR-CEIQTIEDG-AYQSLSHLSTLILTGNPI-Q--SLA------LGAFSGLSSLQKLVAVET-NL 112 (276)
T ss_dssp TTTT-TCTTCSEEECTT-CCCCEECTT-TTTTCTTCCEEECTTCCC-C--EEC------TTTTTTCTTCCEEECTTS-CC
T ss_pred hHhc-cccCCcEEECCC-CcCCccCHH-HccCCcCCCEEECCCCcc-C--ccC------hhhhcCCccccEEECCCC-Cc
Confidence 3577 899999999999 578886443 378999999999998753 3 111 122337899999999987 45
Q ss_pred ccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHh
Q 020667 96 TSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAK 175 (323)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~ 175 (323)
..++... +..+++|++|++++|. +..+ .+|..+..+++|++|++++|. ++.++ +..+.
T Consensus 113 ~~~~~~~--~~~l~~L~~L~l~~n~--------l~~~----------~l~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~ 170 (276)
T 2z62_A 113 ASLENFP--IGHLKTLKELNVAHNL--------IQSF----------KLPEYFSNLTNLEHLDLSSNK-IQSIY-CTDLR 170 (276)
T ss_dssp CCSTTCC--CTTCTTCCEEECCSSC--------CCCC----------CCCGGGGGCTTCCEEECCSSC-CCEEC-GGGGH
T ss_pred cccCchh--cccCCCCCEEECcCCc--------ccee----------cCchhhccCCCCCEEECCCCC-CCcCC-HHHhh
Confidence 5554432 3578999999998862 1111 245567788999999999985 55543 33455
Q ss_pred cccccc----EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcc
Q 020667 176 TLVRLE----YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKI 251 (323)
Q Consensus 176 ~l~~L~----~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 251 (323)
.+++|+ .|+++++. +..++ .......+|+.|+++++ .++.++... +..+++|++|++++++..
T Consensus 171 ~l~~L~~l~l~L~ls~n~-l~~~~--------~~~~~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~-- 237 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNP-MNFIQ--------PGAFKEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPWD-- 237 (276)
T ss_dssp HHHTCTTCCEEEECCSSC-CCEEC--------TTSSCSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSSCBC--
T ss_pred hhhhccccceeeecCCCc-ccccC--------ccccCCCcccEEECCCC-ceeecCHhH-hcccccccEEEccCCccc--
Confidence 566666 78888875 56665 22234458999999996 688887643 467899999999987643
Q ss_pred cCCCCCCCCCccee
Q 020667 252 FSEGNSSTPKLHEV 265 (323)
Q Consensus 252 lp~~~~~~~~L~~L 265 (323)
+.|+.++.+
T Consensus 238 -----c~c~~l~~l 246 (276)
T 2z62_A 238 -----CSCPRIDYL 246 (276)
T ss_dssp -----CCTTTTHHH
T ss_pred -----ccCCchHHH
Confidence 245556555
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=132.17 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=39.9
Q ss_pred ccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCcccccccc--chhhhce
Q 020667 207 ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKD--DLNTTIQ 284 (323)
Q Consensus 207 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~l~ 284 (323)
..+++|++|+++++ +++.++. .+++|++|++++|. ++.+|.. +++|++|++ +.+.+.+ .+|+.++
T Consensus 234 ~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l---s~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 234 QNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDV---SENIFSGLSELPPNLY 300 (454)
T ss_dssp TTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEEC---CSSCCSEESCCCTTCC
T ss_pred CCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCc-ccccCcc---cCcCCEEEC---cCCccCcccCcCCcCC
Confidence 45666666666664 4555442 13567777776643 4446652 467777777 3333433 4455666
Q ss_pred eeeccc
Q 020667 285 KVIFPA 290 (323)
Q Consensus 285 ~l~~~~ 290 (323)
.+.+.+
T Consensus 301 ~L~l~~ 306 (454)
T 1jl5_A 301 YLNASS 306 (454)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 655544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-14 Score=123.53 Aligned_cols=194 Identities=15% Similarity=0.127 Sum_probs=107.4
Q ss_pred CCCccEEEEecCCCCceEEeeccccccCCCc--cccCCcCEEecccccccccccccC-ccccCCCCccEEEEcCCc----
Q 020667 48 FVRLQRIEIVECPVLKELIVMDNQEERKNNN--VMFPQLQYLKMFNLENFTSFCTSN-LGILEFPSLKELWISGCP---- 120 (323)
Q Consensus 48 l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~cp---- 120 (323)
+++|++|++++|.... .. +..+ ..+++|++|+++++..-...+... .....+++|++|++++|.
T Consensus 90 ~~~L~~L~l~~n~l~~--~~-------~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 90 YSRLKELTLEDLKITG--TM-------PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp HSCCCEEEEESCCCBS--CC-------CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC
T ss_pred cCceeEEEeeCCEecc--ch-------hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh
Confidence 4556777766664322 11 1111 256666666666653222111000 001246666677666662
Q ss_pred --hhhhhccCCcceeeecCCCCccc--cC--CCCCCCCCCCEEEeecCcCcceecc-hh-HHhccccccEEEEccCcccc
Q 020667 121 --KFMERYNRTTNILTERGCDHLVD--LV--PSSTSFQNLTNLVVSCCKGLKIVLT-FS-IAKTLVRLEYMEIESCDRIT 192 (323)
Q Consensus 121 --~~~~~l~~L~~L~~i~~~~~l~~--l~--~~~~~l~~L~~L~l~~c~~l~~l~~-~~-~l~~l~~L~~L~l~~c~~l~ 192 (323)
..+..+++|+.| ++.++...+. ++ .....+++|++|++++|. ++.++. +. .+..+++|++|++++|..-.
T Consensus 161 ~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 161 SCEQVRAFPALTSL-DLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CTTSCCCCTTCCEE-ECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred hHHHhccCCCCCEE-ECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 222334444444 3444433221 21 123567888888888875 444311 11 24677888888888876333
Q ss_pred eeeeccCccccccccc---ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 193 EIVLVDDVAAKDEVIT---FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 193 ~i~~~~~~~~~~~~~~---~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
..| ..+.. +++|++|+++++ .++.++... .++|++|++++| .++.+|. ...+++|++|++
T Consensus 239 ~~p--------~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 239 TVN--------PSAPRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCC--------SCCSSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEEC
T ss_pred cch--------hhHHhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEEC
Confidence 323 11122 378888888885 677776543 478888888775 4555655 457788888888
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=117.75 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=132.5
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++ |...+..+++|++|+++++. +. .++.. .+..+++|++|+++++ .+..++...
T Consensus 37 ~~l~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~--~i~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~ 104 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSL-PSKAFHRLTKLRLLYLNDNK-LQ--TLPAG------IFKELKNLETLWVTDN-KLQALPIGV 104 (270)
T ss_dssp TTCSEEECCS-SCCSCC-CTTSSSSCTTCCEEECCSSC-CS--CCCTT------TTSSCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCEEECcC-CCCCee-CHHHhcCCCCCCEEECCCCc-cC--eeChh------hhcCCCCCCEEECCCC-cCCcCCHhH
Confidence 6799999998 678876 44347899999999999874 33 12211 1236899999999987 466666543
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++|. +..++ ..+..+++|++|++++|. ++.++ +..+..+++|+
T Consensus 105 --~~~l~~L~~L~l~~n~--------------------l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~ 160 (270)
T 2o6q_A 105 --FDQLVNLAELRLDRNQ--------------------LKSLPPRVFDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLK 160 (270)
T ss_dssp --TTTCSSCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred --cccccCCCEEECCCCc--------------------cCeeCHHHhCcCcCCCEEECCCCc-CCccC-HhHccCCcccc
Confidence 2578999999998862 11222 235678999999999985 55553 33467899999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+|++++|. +..++ ...+..+++|+.|+++++ .++.++... +..+++|++|++++++.
T Consensus 161 ~L~L~~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVP-------EGAFDKLTELKTLKLDNN-QLKRVPEGA-FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred eeEecCCc-CcEeC-------hhHhccCCCcCEEECCCC-cCCcCCHHH-hccccCCCEEEecCCCe
Confidence 99999875 55555 123457899999999996 788887653 46789999999998763
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-15 Score=138.86 Aligned_cols=237 Identities=11% Similarity=0.066 Sum_probs=154.4
Q ss_pred cccccccCCcccEEeeecccccceeccch---hHhcCCCccEEEEecCC--CCceEEeeccccccCCCccccCCcCEEec
Q 020667 15 VTVMSCGIQNLMHLTLRSCMNLRYLFSSS---IVSSFVRLQRIEIVECP--VLKELIVMDNQEERKNNNVMFPQLQYLKM 89 (323)
Q Consensus 15 p~~~~~~l~~L~~L~L~~c~~l~~~~p~~---~~~~l~~L~~L~ls~c~--~l~~l~~~~~~~~~~~~~~~l~~L~~L~l 89 (323)
+..+. .+++|++|++++| .+++..+.. .+..+++|++|++++|. .+.. .++.........+..+++|++|++
T Consensus 25 ~~~l~-~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~-~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 25 FAVLL-EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD-EIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp SHHHH-HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGG-GSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHh-cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCcccc-chhHHHHHHHHHHhhCCcccEEEC
Confidence 34466 7899999999994 566543322 14579999999999873 2220 001111111122347899999999
Q ss_pred cccccccc-----ccccCccccCCCCccEEEEcCCch------hh----hhc---------cCCcceeeecCCCCc-ccc
Q 020667 90 FNLENFTS-----FCTSNLGILEFPSLKELWISGCPK------FM----ERY---------NRTTNILTERGCDHL-VDL 144 (323)
Q Consensus 90 ~~~~~l~~-----~~~~~~~~~~l~~L~~L~l~~cp~------~~----~~l---------~~L~~L~~i~~~~~l-~~l 144 (323)
+++. ++. ++.. ...+++|++|++++|.- .+ ..+ ++|++| .+.+|... ..+
T Consensus 102 s~n~-l~~~~~~~l~~~---l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L-~L~~n~l~~~~~ 176 (386)
T 2ca6_A 102 SDNA-FGPTAQEPLIDF---LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI-ICGRNRLENGSM 176 (386)
T ss_dssp CSCC-CCTTTHHHHHHH---HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE-ECCSSCCTGGGH
T ss_pred CCCc-CCHHHHHHHHHH---HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE-ECCCCCCCcHHH
Confidence 9884 443 3333 23789999999999932 12 223 678877 56666543 233
Q ss_pred C---CCCCCCCCCCEEEeecCcCcceec----chhHHhccccccEEEEccCccc----ceeeeccCcccccccccccccC
Q 020667 145 V---PSSTSFQNLTNLVVSCCKGLKIVL----TFSIAKTLVRLEYMEIESCDRI----TEIVLVDDVAAKDEVITFRELK 213 (323)
Q Consensus 145 ~---~~~~~l~~L~~L~l~~c~~l~~l~----~~~~l~~l~~L~~L~l~~c~~l----~~i~~~~~~~~~~~~~~~~~L~ 213 (323)
+ ..+..+++|++|++++|. ++... .+..+..+++|+.|++++|..- ..++ ..+..+++|+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~--------~~l~~~~~L~ 247 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--------IALKSWPNLR 247 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH--------HHGGGCTTCC
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH--------HHHccCCCcC
Confidence 3 245577899999999985 44211 1225678999999999998732 3333 3346789999
Q ss_pred eeecccccccceecCC---Ccc--ccCCcccEEeecCCCCCc----ccCCCC-CCCCCcceeEccC
Q 020667 214 ELKLLNLESLTSFCSG---NCA--FKFPSLERLVLDDCPSMK----IFSEGN-SSTPKLHEVQWPG 269 (323)
Q Consensus 214 ~L~l~~c~~L~~l~~~---~~~--~~l~~L~~L~l~~c~~l~----~lp~~~-~~~~~L~~L~l~~ 269 (323)
+|++++| .++..... ... ..+++|++|++++|..-. .+|..+ .++++|++|++.+
T Consensus 248 ~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 248 ELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp EEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred EEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999997 45543111 011 238999999999976444 388766 4589999999944
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=114.91 Aligned_cols=177 Identities=20% Similarity=0.191 Sum_probs=132.2
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.+++++|++++ +.++++.|.. +..+++|++|+++++. +..+ +.. ..+++|++|+++++ .+..++..
T Consensus 30 ~~~l~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~--~~~--------~~l~~L~~L~Ls~N-~l~~l~~~ 95 (290)
T 1p9a_G 30 PKDTTILHLSE-NLLYTFSLAT-LMPYTRLTQLNLDRAE-LTKL--QVD--------GTLPVLGTLDLSHN-QLQSLPLL 95 (290)
T ss_dssp CTTCCEEECTT-SCCSEEEGGG-GTTCTTCCEEECTTSC-CCEE--ECC--------SCCTTCCEEECCSS-CCSSCCCC
T ss_pred CCCCCEEEcCC-CcCCccCHHH-hhcCCCCCEEECCCCc-cCcc--cCC--------CCCCcCCEEECCCC-cCCcCchh
Confidence 37899999999 6788875544 7899999999999875 5532 211 27899999999987 57777765
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|. +..++ ..+..+++|++|++++|. ++.++ +..+..+++|
T Consensus 96 ~---~~l~~L~~L~l~~N~--------------------l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L 150 (290)
T 1p9a_G 96 G---QTLPALTVLDVSFNR--------------------LTSLPLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKL 150 (290)
T ss_dssp T---TTCTTCCEEECCSSC--------------------CCCCCSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTC
T ss_pred h---ccCCCCCEEECCCCc--------------------CcccCHHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCC
Confidence 3 488999999998862 22233 346678899999999885 55553 3456788999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+.|++++|. +..++. ..+..+++|+.|+++++ .++.++... ...++|+.|++++++.
T Consensus 151 ~~L~L~~N~-l~~l~~-------~~~~~l~~L~~L~L~~N-~l~~ip~~~--~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANNN-LTELPA-------GLLNGLENLDTLLLQEN-SLYTIPKGF--FGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTSC-CSCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred CEEECCCCc-CCccCH-------HHhcCcCCCCEEECCCC-cCCccChhh--cccccCCeEEeCCCCc
Confidence 999998875 666651 22356889999999985 788887754 5677899999987664
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-13 Score=116.63 Aligned_cols=176 Identities=15% Similarity=0.262 Sum_probs=125.4
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ +.++++ +. +..+++|++|+++++. ++.+ + .+..+++|++|+++++ .+.
T Consensus 58 ~~~-~l~~L~~L~L~~-n~i~~~-~~--~~~l~~L~~L~L~~n~-l~~~--~--------~~~~l~~L~~L~l~~n-~l~ 120 (308)
T 1h6u_A 58 GVQ-YLNNLIGLELKD-NQITDL-AP--LKNLTKITELELSGNP-LKNV--S--------AIAGLQSIKTLDLTST-QIT 120 (308)
T ss_dssp TGG-GCTTCCEEECCS-SCCCCC-GG--GTTCCSCCEEECCSCC-CSCC--G--------GGTTCTTCCEEECTTS-CCC
T ss_pred hhh-ccCCCCEEEccC-CcCCCC-hh--HccCCCCCEEEccCCc-CCCc--h--------hhcCCCCCCEEECCCC-CCC
Confidence 477 899999999998 578875 54 7899999999999886 4421 1 2347999999999998 466
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
.++. ...+++|++|++++|. + ..+++ +..+++|++|++++|. ++.+ +. +..
T Consensus 121 ~~~~----l~~l~~L~~L~l~~n~--------l------------~~~~~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~ 171 (308)
T 1h6u_A 121 DVTP----LAGLSNLQVLYLDLNQ--------I------------TNISP-LAGLTNLQYLSIGNAQ-VSDL--TP-LAN 171 (308)
T ss_dssp CCGG----GTTCTTCCEEECCSSC--------C------------CCCGG-GGGCTTCCEEECCSSC-CCCC--GG-GTT
T ss_pred Cchh----hcCCCCCCEEECCCCc--------c------------CcCcc-ccCCCCccEEEccCCc-CCCC--hh-hcC
Confidence 6654 2479999999998872 1 11212 5567788888888774 5554 22 677
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFS 253 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp 253 (323)
+++|+.|++++|. +..++ .+..+++|++|+++++ .++.++. ...+++|++|++++|+ +...|
T Consensus 172 l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 172 LSKLTTLKADDNK-ISDIS---------PLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CTTCCEEECCSSC-CCCCG---------GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE-EECCC
T ss_pred CCCCCEEECCCCc-cCcCh---------hhcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe-eecCC
Confidence 8888888888764 44444 1357788888888886 5666652 3567888888887755 34333
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-14 Score=136.21 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=51.8
Q ss_pred CccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecC----------CCC
Q 020667 77 NNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERG----------CDH 140 (323)
Q Consensus 77 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~----------~~~ 140 (323)
.+..+++|++|++++|. +........ ...+++|++|++.++ +.....+++|++| .+.+ |..
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L-~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL-RIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE-EEECCCCSSTTSSTTCC
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE-EeecCccccccccccCc
Confidence 34456677777777765 332211100 135677777777644 2223345666666 4553 444
Q ss_pred cccc--CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEc
Q 020667 141 LVDL--VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIE 186 (323)
Q Consensus 141 l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~ 186 (323)
++.. +.....+++|++|++ .|..+++.........+++|+.|++.
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 4321 111223566666666 33334432211222236666666665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=139.18 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=86.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecC---------------CCCceEEeeccc--c----ccCCCcc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC---------------PVLKELIVMDNQ--E----ERKNNNV 79 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c---------------~~l~~l~~~~~~--~----~~~~~~~ 79 (323)
.+++|++|++++|. +++..+..+...+++|++|++++| ++++++.+..+. + ..+....
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 46677777777643 444333332235677777776643 344444433221 0 0111222
Q ss_pred ccCCcCEEeccccc-ccc--cccccCccccCCCCccEEEEcCCc------hhhhhccCCccee-----------------
Q 020667 80 MFPQLQYLKMFNLE-NFT--SFCTSNLGILEFPSLKELWISGCP------KFMERYNRTTNIL----------------- 133 (323)
Q Consensus 80 ~l~~L~~L~l~~~~-~l~--~~~~~~~~~~~l~~L~~L~l~~cp------~~~~~l~~L~~L~----------------- 133 (323)
.+++|++|++++|. .+. .+... ...+++|++|++.+|. ..+..+++|++|.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERL---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHH---HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHH---HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 56688888888774 111 11111 1247899999999882 3344556666663
Q ss_pred -eecCCCCcccc-----------CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccC
Q 020667 134 -TERGCDHLVDL-----------VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 134 -~i~~~~~l~~l-----------~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+.+|..+..+ +.....+++|++|++++|. +++......+.++++|++|++.+|
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 12333333322 2222246778888888776 444322333556777777777665
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.1e-13 Score=118.45 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=145.9
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|+|++ +.+.+.+|...+.++++|+.+.+.++..+. .++.. .+..+++|++|+++++ .+.
T Consensus 49 ~f~-~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~--~l~~~------~f~~l~~L~~L~l~~n-~l~ 117 (350)
T 4ay9_X 49 AFS-GFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPE------AFQNLPNLQYLLISNT-GIK 117 (350)
T ss_dssp SST-TCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEEEETTCC--EECTT------SBCCCTTCCEEEEEEE-CCS
T ss_pred HHc-CCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcccCCccc--ccCch------hhhhcccccccccccc-ccc
Confidence 466 899999999999 455444576667889999988887777887 33221 2237899999999987 566
Q ss_pred cccccCccccCCCCccEEEEcCCchhh-------hhc-cCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCccee
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFM-------ERY-NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIV 168 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~-------~~l-~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 168 (323)
.++.... ....++..|++.++.... ..+ ..++.| .-..+.+..+++.....++|+++.+.+++.++.+
T Consensus 118 ~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L--~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 118 HLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL--WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp SCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE--ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred cCCchhh--cccchhhhhhhccccccccccccchhhcchhhhhh--ccccccccCCChhhccccchhHHhhccCCcccCC
Confidence 6655432 345678888887763321 111 123333 2344567788888878889999999998889988
Q ss_pred cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 169 LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
+ ...+.++++|+.|+++++. ++.+|. ..+.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 194 ~-~~~f~~l~~L~~LdLs~N~-l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 194 P-NDVFHGASGPVILDISRTR-IHSLPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp C-TTTTTTEECCSEEECTTSC-CCCCCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred C-HHHhccCcccchhhcCCCC-cCccCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 4 2456889999999999874 788872 3578899999999999999984 35799999999865
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-12 Score=122.98 Aligned_cols=174 Identities=13% Similarity=0.070 Sum_probs=114.0
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCch-------hhhhccCCcceeeecCCCCccccCCCCCCCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPK-------FMERYNRTTNILTERGCDHLVDLVPSSTSFQ 152 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~-------~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~ 152 (323)
.+.+|++|++..+. ....+.. +..+++|+.+++..+.. .+..+..+..+ .+..+......+.....++
T Consensus 395 ~~~~L~~L~~~~~~-~~~~~~~---~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l-~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 395 GTISLKYLDLSFNG-VITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp SCSCCCEEECCSCS-EEEECSC---CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE-ECTTSCCEECCTTTTTTCT
T ss_pred hhhhhhhhhccccc-ccccccc---ccccccccchhhhhccccccccccccccccccccc-cccccccccccccccccch
Confidence 45566666666553 2223322 23677788887776621 12223333333 2344433333445566788
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
+|+.|++++|.....+. +..+..+++|+.|++++|. +..++ ...+..+++|++|+++++ +++.++... +
T Consensus 470 ~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~-------~~~f~~l~~L~~L~Ls~N-~l~~l~~~~-~ 538 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMSHN-NFFSLDTFP-Y 538 (635)
T ss_dssp TCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECTTS-CCCBCCCGG-G
T ss_pred hhhhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcC-------hHHHcCCCCCCEEECCCC-cCCCCChhH-H
Confidence 99999999887555432 4457788999999999885 66664 244567899999999996 788886643 4
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCC-CCcceeEccC
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSST-PKLHEVQWPG 269 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~L~l~~ 269 (323)
..+++|++|+++++...+..|..+..+ ++|+.|++.+
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 678999999998866555556666666 6899999943
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=106.24 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=106.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc-cc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS-FC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~ 99 (323)
.+++|++|++++ +.++.+ |. +..+++|++|++++| .+..+ +.+..+++|++|+++++. +.. .+
T Consensus 42 ~l~~L~~L~l~~-n~i~~l-~~--l~~l~~L~~L~l~~n-~~~~~----------~~l~~l~~L~~L~l~~n~-l~~~~~ 105 (197)
T 4ezg_A 42 QMNSLTYITLAN-INVTDL-TG--IEYAHNIKDLTINNI-HATNY----------NPISGLSNLERLRIMGKD-VTSDKI 105 (197)
T ss_dssp HHHTCCEEEEES-SCCSCC-TT--GGGCTTCSEEEEESC-CCSCC----------GGGTTCTTCCEEEEECTT-CBGGGS
T ss_pred hcCCccEEeccC-CCccCh-HH--HhcCCCCCEEEccCC-CCCcc----------hhhhcCCCCCEEEeECCc-cCcccC
Confidence 789999999998 677764 64 789999999999998 44411 133478999999999874 443 44
Q ss_pred ccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccc
Q 020667 100 TSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVR 179 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~ 179 (323)
.. ...+++|++|++++|.-. ...+..+..+++|++|++++|..++++ + .+..+++
T Consensus 106 ~~---l~~l~~L~~L~Ls~n~i~-------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~ 160 (197)
T 4ezg_A 106 PN---LSGLTSLTLLDISHSAHD-------------------DSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPE 160 (197)
T ss_dssp CC---CTTCTTCCEEECCSSBCB-------------------GGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSS
T ss_pred hh---hcCCCCCCEEEecCCccC-------------------cHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCC
Confidence 44 347899999999887210 011233556788888888888756666 2 4677888
Q ss_pred ccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 180 LEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 180 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
|+.|++++|. +.+++ .+..+++|+.|++.+.
T Consensus 161 L~~L~l~~n~-i~~~~---------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 161 LKSLNIQFDG-VHDYR---------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECTTBC-CCCCT---------TGGGCSSCCEEEECBC
T ss_pred CCEEECCCCC-CcChH---------HhccCCCCCEEEeeCc
Confidence 8888888875 44443 2357788888888874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-12 Score=105.28 Aligned_cols=151 Identities=20% Similarity=0.244 Sum_probs=89.3
Q ss_pred hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhh
Q 020667 46 SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMER 125 (323)
Q Consensus 46 ~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~ 125 (323)
+.+++|+.|+++++. +. .++ .+..+++|++|++++| .+..++. ...+++|++|++++|.
T Consensus 41 ~~l~~L~~L~l~~n~-i~--~l~--------~l~~l~~L~~L~l~~n-~~~~~~~----l~~l~~L~~L~l~~n~----- 99 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VT--DLT--------GIEYAHNIKDLTINNI-HATNYNP----ISGLSNLERLRIMGKD----- 99 (197)
T ss_dssp HHHHTCCEEEEESSC-CS--CCT--------TGGGCTTCSEEEEESC-CCSCCGG----GTTCTTCCEEEEECTT-----
T ss_pred hhcCCccEEeccCCC-cc--ChH--------HHhcCCCCCEEEccCC-CCCcchh----hhcCCCCCEEEeECCc-----
Confidence 466777777777653 22 111 2336777777777776 4444432 2357777777776652
Q ss_pred ccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccc
Q 020667 126 YNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDE 205 (323)
Q Consensus 126 l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 205 (323)
.....+..+..+++|++|++++|...... +..+..+++|++|++++|..+++++ .
T Consensus 100 --------------l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~---------~ 154 (197)
T 4ezg_A 100 --------------VTSDKIPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDIM---------P 154 (197)
T ss_dssp --------------CBGGGSCCCTTCTTCCEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCCG---------G
T ss_pred --------------cCcccChhhcCCCCCCEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccccH---------h
Confidence 01112344556777788888777532222 4456677777777777776555553 2
Q ss_pred cccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 206 VITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 206 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
+..+++|+.|++++| .++.++ ....+++|++|+++++
T Consensus 155 l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 155 LKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC
T ss_pred hcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCc
Confidence 346677777777775 455554 2345667777777654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-12 Score=112.49 Aligned_cols=168 Identities=13% Similarity=0.231 Sum_probs=101.3
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+++|++|++++ +.++.+ +. +..+++|++|+++++. +.. +.. +..+++|++|+++++ .+..++.
T Consensus 44 ~l~~L~~L~l~~-~~i~~~-~~--~~~l~~L~~L~L~~n~-l~~--~~~--------l~~l~~L~~L~l~~n-~l~~~~~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANN-SDIKSV-QG--IQYLPNVTKLFLNGNK-LTD--IKP--------LANLKNLGWLFLDEN-KVKDLSS 107 (291)
T ss_dssp HHHTCCEEECTT-SCCCCC-TT--GGGCTTCCEEECCSSC-CCC--CGG--------GTTCTTCCEEECCSS-CCCCGGG
T ss_pred hcCcccEEEccC-CCcccC-hh--HhcCCCCCEEEccCCc-cCC--Ccc--------cccCCCCCEEECCCC-cCCCChh
Confidence 567777777777 356654 44 5677777777777663 221 111 336777777777776 3555443
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|++|++++|. + ..+ +.+..+++|++|++++|. ++.+ ..+..+++|
T Consensus 108 ----l~~l~~L~~L~L~~n~--------i------------~~~-~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L 158 (291)
T 1h6t_A 108 ----LKDLKKLKSLSLEHNG--------I------------SDI-NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKL 158 (291)
T ss_dssp ----GTTCTTCCEEECTTSC--------C------------CCC-GGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTC
T ss_pred ----hccCCCCCEEECCCCc--------C------------CCC-hhhcCCCCCCEEEccCCc-CCcc---hhhccCCCC
Confidence 2367777777777652 1 111 234456677777777664 4443 245667777
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+.|++++|. +..++ . +..+++|+.|+++++ .++.++. ...+++|+.|++++++
T Consensus 159 ~~L~L~~N~-l~~~~--------~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 159 DTLSLEDNQ-ISDIV--------P-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp SEEECCSSC-CCCCG--------G-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred CEEEccCCc-cccch--------h-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 777777664 44443 1 356677777777775 5666542 3457777777776653
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=105.94 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=114.0
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCcccc-CCCCCCCCCCCEEEee
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDL-VPSSTSFQNLTNLVVS 160 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l-~~~~~~l~~L~~L~l~ 160 (323)
++++.|+++++ .+..++... +..+++|++|++++|. +..+ +..+..+++|++|+++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT--FRGLTKLTWLNLDYNQ--------------------LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTSC--------------------CCCCCTTTTTTCTTCCEEECT
T ss_pred CCCCEEEccCC-CcCccCHhH--hcCcccCCEEECCCCc--------------------CCccCHhHhccCCcCCEEECC
Confidence 68999999987 455555432 2478899999988762 1122 2336778999999999
Q ss_pred cCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccE
Q 020667 161 CCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLER 240 (323)
Q Consensus 161 ~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~ 240 (323)
+|. ++.++ +..+..+++|++|+++++. +..++ ...+..+++|++|+++++ +++.++... +..+++|++
T Consensus 92 ~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~ 159 (251)
T 3m19_A 92 NNQ-LASLP-LGVFDHLTQLDKLYLGGNQ-LKSLP-------SGVFDRLTKLKELRLNTN-QLQSIPAGA-FDKLTNLQT 159 (251)
T ss_dssp TSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCE
T ss_pred CCc-ccccC-hhHhcccCCCCEEEcCCCc-CCCcC-------hhHhccCCcccEEECcCC-cCCccCHHH-cCcCcCCCE
Confidence 885 55543 3456789999999999874 66665 123457899999999996 788887643 467899999
Q ss_pred EeecCCCCCcccCC-CCCCCCCcceeEccCcccccccc
Q 020667 241 LVLDDCPSMKIFSE-GNSSTPKLHEVQWPGEARWAWKD 277 (323)
Q Consensus 241 L~l~~c~~l~~lp~-~~~~~~~L~~L~l~~~~~~~~~~ 277 (323)
|+++++ .++.+|. .+..+++|+.|++ ..+.+.+
T Consensus 160 L~L~~N-~l~~~~~~~~~~l~~L~~L~l---~~N~~~c 193 (251)
T 3m19_A 160 LSLSTN-QLQSVPHGAFDRLGKLQTITL---FGNQFDC 193 (251)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEEC---CSCCBCT
T ss_pred EECCCC-cCCccCHHHHhCCCCCCEEEe---eCCceeC
Confidence 999886 4555654 5668899999999 4455544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.8e-14 Score=133.84 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=125.0
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcC------
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISG------ 118 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~------ 118 (323)
+..+++|++|++++|. +....+ ...+..+++|++|++.++-.-..++.. ...+++|++|++.+
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~-------~~~~~~~~~L~~L~L~~~~~~~~l~~~---~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDH-------CTLIQKCPNLEVLETRNVIGDRGLEVL---AQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHH-------HHHHTTCTTCCEEEEEGGGHHHHHHHH---HHHCTTCCEEEEECCCCSST
T ss_pred HhhcCCCcEEecCCCc-CCHHHH-------HHHHHhCcCCCEEeccCccCHHHHHHH---HHhCCCCCEEEeecCccccc
Confidence 5567788888888776 331010 011237899999999844222223222 23688999999995
Q ss_pred ----Cch--------hhhhccCCcceeeecCCCCccc-cCCCCC-CCCCCCEEEeec---CcCcceec----chhHHhcc
Q 020667 119 ----CPK--------FMERYNRTTNILTERGCDHLVD-LVPSST-SFQNLTNLVVSC---CKGLKIVL----TFSIAKTL 177 (323)
Q Consensus 119 ----cp~--------~~~~l~~L~~L~~i~~~~~l~~-l~~~~~-~l~~L~~L~l~~---c~~l~~l~----~~~~l~~l 177 (323)
|.. ....+++|++| .+ .|..++. .+..+. .+++|++|+++. |+.+++.+ ....+.++
T Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~L~~L-~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 358 MEDEEGLVSQRGLIALAQGCQELEYM-AV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp TSSTTCCCCHHHHHHHHHHCTTCSEE-EE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccCccCHHHHHHHHhhCccCeEE-Ee-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 632 22346778777 34 4444432 122233 378899999984 55666532 13346778
Q ss_pred ccccEEEEccCcc-cceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCc--ccCC
Q 020667 178 VRLEYMEIESCDR-ITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMK--IFSE 254 (323)
Q Consensus 178 ~~L~~L~l~~c~~-l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~lp~ 254 (323)
++|++|++++|.. +..... ......+++|+.|++++| .++..........+++|++|++++|+ ++ .++.
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~------~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 507 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGL------SYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA 507 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHH------HHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred CCCCEEEEecCCCCccHHHH------HHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence 9999999987664 222110 001134788999999987 45542222223467899999999998 43 2444
Q ss_pred CCCCCCCcceeEccCcc
Q 020667 255 GNSSTPKLHEVQWPGEA 271 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~~~ 271 (323)
....+++|++|++.++.
T Consensus 508 ~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHCSSCCEEEEESCB
T ss_pred HHHhcCccCeeECcCCc
Confidence 44468899999995543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=117.83 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=150.7
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC----------CCceEEeeccccccCCCccccCCcCEEecc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP----------VLKELIVMDNQEERKNNNVMFPQLQYLKMF 90 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~----------~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (323)
.+.+++.+.+.+ ..+..+ +. +....+|+.|+++++. .++.+.+..+..........+++|+.|+++
T Consensus 304 ~~~~l~~l~~~~-~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 304 CLTNVSSFSLVS-VTIERV-KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 379 (635)
T ss_dssp GGTTCSEEEEES-CEEEEC-GG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECC
T ss_pred hhcccccccccc-cccccc-cc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhh
Confidence 566777777776 334443 33 4566778888877652 223223332222222233356777777777
Q ss_pred cccccccccccCccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcC
Q 020667 91 NLENFTSFCTSNLGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKG 164 (323)
Q Consensus 91 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~ 164 (323)
++.. ............+.+|+.+++..+. ..+..+++++.+ .+..+......+ .....+++++.++++.+.
T Consensus 380 ~n~l-~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l-~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~- 456 (635)
T 4g8a_A 380 RNGL-SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH- 456 (635)
T ss_dssp SSCC-BEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE-ECTTSEEESTTSSCTTTTCTTCCEEECTTSC-
T ss_pred cccc-ccccccccchhhhhhhhhhhccccccccccccccccccccch-hhhhccccccccccccccccccccccccccc-
Confidence 6532 2111110002356677777777662 122223444444 233333332222 235577889999998875
Q ss_pred cceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeec
Q 020667 165 LKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLD 244 (323)
Q Consensus 165 l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~ 244 (323)
+.... +..+..+++|+.|++++|.....+. ...+..+++|++|+++++ +++.++... +..+++|++|+++
T Consensus 457 l~~~~-~~~~~~~~~L~~L~Ls~N~~~~~~~-------~~~~~~l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 457 TRVAF-NGIFNGLSSLEVLKMAGNSFQENFL-------PDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMS 526 (635)
T ss_dssp CEECC-TTTTTTCTTCCEEECTTCEEGGGEE-------CSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECT
T ss_pred ccccc-ccccccchhhhhhhhhhcccccccC-------chhhhhccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECC
Confidence 33332 4556788999999999988666554 134568899999999997 788887654 5679999999998
Q ss_pred CCCCCcccCC-CCCCCCCcceeEccCccccccccc-------hhhhceeeeccc
Q 020667 245 DCPSMKIFSE-GNSSTPKLHEVQWPGEARWAWKDD-------LNTTIQKVIFPA 290 (323)
Q Consensus 245 ~c~~l~~lp~-~~~~~~~L~~L~l~~~~~~~~~~~-------l~~~l~~l~~~~ 290 (323)
++ .++.++. .+..+++|+.|++ ..+.+.+. ++++++.+.+.+
T Consensus 527 ~N-~l~~l~~~~~~~l~~L~~L~L---s~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 527 HN-NFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TS-CCCBCCCGGGTTCTTCCEEEC---TTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CC-cCCCCChhHHhCCCCCCEEEC---CCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 86 5666654 4668899999999 44444333 334566666655
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=113.52 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=138.9
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.++..+.+.. ..++++.+ ...+++|+.|++++|. +..+ +.+..+++|++|+++++ .+..++.
T Consensus 22 ~l~~~~~~~l~~-~~~~~~~~---~~~l~~L~~L~l~~~~-i~~~----------~~~~~l~~L~~L~L~~n-~l~~~~~ 85 (291)
T 1h6t_A 22 AFAETIKDNLKK-KSVTDAVT---QNELNSIDQIIANNSD-IKSV----------QGIQYLPNVTKLFLNGN-KLTDIKP 85 (291)
T ss_dssp HHHHHHHHHTTC-SCTTSEEC---HHHHHTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECCSS-CCCCCGG
T ss_pred HHHHHHHHHhcC-CCcccccc---hhhcCcccEEEccCCC-cccC----------hhHhcCCCCCEEEccCC-ccCCCcc
Confidence 345556666665 55665423 4678999999999874 3311 12347899999999988 5666654
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|. + ..+ +.+..+++|++|++++|. ++.+ ..+..+++|
T Consensus 86 -l---~~l~~L~~L~l~~n~--------l------------~~~-~~l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L 136 (291)
T 1h6t_A 86 -L---ANLKNLGWLFLDENK--------V------------KDL-SSLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQL 136 (291)
T ss_dssp -G---TTCTTCCEEECCSSC--------C------------CCG-GGGTTCTTCCEEECTTSC-CCCC---GGGGGCTTC
T ss_pred -c---ccCCCCCEEECCCCc--------C------------CCC-hhhccCCCCCEEECCCCc-CCCC---hhhcCCCCC
Confidence 2 479999999998862 1 112 236778999999999985 5554 347889999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++++|. +..++ .+..+++|+.|+++++ .++.++. ...+++|++|++++| .++.+|. +..++
T Consensus 137 ~~L~l~~n~-l~~~~---------~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~-l~~l~ 200 (291)
T 1h6t_A 137 ESLYLGNNK-ITDIT---------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLK 200 (291)
T ss_dssp CEEECCSSC-CCCCG---------GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCT
T ss_pred CEEEccCCc-CCcch---------hhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCChh-hccCC
Confidence 999999875 44442 3468899999999997 7777754 467999999999886 6777775 67899
Q ss_pred CcceeEccC
Q 020667 261 KLHEVQWPG 269 (323)
Q Consensus 261 ~L~~L~l~~ 269 (323)
+|+.|++.+
T Consensus 201 ~L~~L~l~~ 209 (291)
T 1h6t_A 201 NLDVLELFS 209 (291)
T ss_dssp TCSEEEEEE
T ss_pred CCCEEECcC
Confidence 999999944
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=120.96 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=136.6
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+|++|++++ ++++++ |..+ +++|++|+++++. ++ .++ ..+++|++|+++++ .++.++. ..
T Consensus 60 ~L~~L~Ls~-n~L~~l-p~~l---~~~L~~L~Ls~N~-l~--~ip----------~~l~~L~~L~Ls~N-~l~~ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSL-PDNL---PPQITVLEITQNA-LI--SLP----------ELPASLEYLDACDN-RLSTLPE-LP 119 (571)
T ss_dssp TCSEEECCS-SCCSCC-CSCC---CTTCSEEECCSSC-CS--CCC----------CCCTTCCEEECCSS-CCSCCCC-CC
T ss_pred CccEEEeCC-CCCCcc-CHhH---cCCCCEEECcCCC-Cc--ccc----------cccCCCCEEEccCC-CCCCcch-hh
Confidence 899999998 578884 6642 4889999999874 44 222 15789999999987 5666665 22
Q ss_pred cccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEE
Q 020667 104 GILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYM 183 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 183 (323)
. +|++|++++|. +..+|. .+++|+.|++++|. ++.++ . .+++|+.|
T Consensus 120 ---~--~L~~L~Ls~N~--------------------l~~lp~---~l~~L~~L~Ls~N~-l~~lp--~---~l~~L~~L 165 (571)
T 3cvr_A 120 ---A--SLKHLDVDNNQ--------------------LTMLPE---LPALLEYINADNNQ-LTMLP--E---LPTSLEVL 165 (571)
T ss_dssp ---T--TCCEEECCSSC--------------------CSCCCC---CCTTCCEEECCSSC-CSCCC--C---CCTTCCEE
T ss_pred ---c--CCCEEECCCCc--------------------CCCCCC---cCccccEEeCCCCc-cCcCC--C---cCCCcCEE
Confidence 2 89999988762 222333 57889999999885 55553 2 57889999
Q ss_pred EEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc-------cEEeecCCCCCcccCCCC
Q 020667 184 EIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL-------ERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 184 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L-------~~L~l~~c~~l~~lp~~~ 256 (323)
++++|. ++.++ . +. ++|+.|+++++ +++.++. . . .+| ++|++++| .++.+|.++
T Consensus 166 ~Ls~N~-L~~lp--------~-l~--~~L~~L~Ls~N-~L~~lp~-~--~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l 226 (571)
T 3cvr_A 166 SVRNNQ-LTFLP--------E-LP--ESLEALDVSTN-LLESLPA-V--P--VRNHHSEETEIFFRCREN-RITHIPENI 226 (571)
T ss_dssp ECCSSC-CSCCC--------C-CC--TTCCEEECCSS-CCSSCCC-C--C----------CCEEEECCSS-CCCCCCGGG
T ss_pred ECCCCC-CCCcc--------h-hh--CCCCEEECcCC-CCCchhh-H--H--HhhhcccccceEEecCCC-cceecCHHH
Confidence 999875 55566 2 22 89999999986 7887765 2 1 266 99999875 677899888
Q ss_pred CCCCCcceeEccCccccccccchhhhceeee
Q 020667 257 SSTPKLHEVQWPGEARWAWKDDLNTTIQKVI 287 (323)
Q Consensus 257 ~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~ 287 (323)
..+++|+.|++ ..+.+.+.+|..+..+.
T Consensus 227 ~~l~~L~~L~L---~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 227 LSLDPTCTIIL---EDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGSCTTEEEEC---CSSSCCHHHHHHHHHHH
T ss_pred hcCCCCCEEEe---eCCcCCCcCHHHHHHhh
Confidence 88999999999 77777777777766543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=123.29 Aligned_cols=170 Identities=13% Similarity=0.234 Sum_probs=103.9
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. .+++|++|++++ +.++.+ |. +..+++|+.|+|++|. +.. ++. +..+++|+.|++++| .+..
T Consensus 39 ~~-~L~~L~~L~l~~-n~i~~l-~~--l~~l~~L~~L~Ls~N~-l~~--~~~--------l~~l~~L~~L~Ls~N-~l~~ 101 (605)
T 1m9s_A 39 QN-ELNSIDQIIANN-SDIKSV-QG--IQYLPNVTKLFLNGNK-LTD--IKP--------LTNLKNLGWLFLDEN-KIKD 101 (605)
T ss_dssp HH-HHTTCCCCBCTT-CCCCCC-TT--GGGCTTCCEEECTTSC-CCC--CGG--------GGGCTTCCEEECCSS-CCCC
T ss_pred hh-cCCCCCEEECcC-CCCCCC-hH--HccCCCCCEEEeeCCC-CCC--Chh--------hccCCCCCEEECcCC-CCCC
Confidence 44 688899999988 457664 54 6789999999998874 331 111 347889999999887 4665
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
++. ...+++|+.|++++|. +. .+ +.+..+++|+.|++++|. +..+ ..+..+
T Consensus 102 l~~----l~~l~~L~~L~Ls~N~--------l~------------~l-~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l 152 (605)
T 1m9s_A 102 LSS----LKDLKKLKSLSLEHNG--------IS------------DI-NGLVHLPQLESLYLGNNK-ITDI---TVLSRL 152 (605)
T ss_dssp CTT----STTCTTCCEEECTTSC--------CC------------CC-GGGGGCTTCSEEECCSSC-CCCC---GGGGSC
T ss_pred Chh----hccCCCCCEEEecCCC--------CC------------CC-ccccCCCccCEEECCCCc-cCCc---hhhccc
Confidence 542 3478889999888872 01 11 224455666666666653 3333 235566
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
++|+.|++++|. +..++ . +..+++|+.|+|+++ .+..++. +..+++|+.|++++|+
T Consensus 153 ~~L~~L~Ls~N~-l~~~~--------~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 153 TKLDTLSLEDNQ-ISDIV--------P-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCSEEECCSSC-CCCCG--------G-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCc-CCCch--------h-hccCCCCCEEECcCC-CCCCChH---HccCCCCCEEEccCCc
Confidence 666666666653 33332 1 345666666666664 4555431 3456666666666544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=124.54 Aligned_cols=188 Identities=14% Similarity=0.181 Sum_probs=140.0
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.++..+.+.. ..+.++.+ ...+++|+.|+++++. +.. ++ .+..+++|+.|+++++ .+..++.
T Consensus 19 ~l~~l~~l~l~~-~~i~~~~~---~~~L~~L~~L~l~~n~-i~~--l~--------~l~~l~~L~~L~Ls~N-~l~~~~~ 82 (605)
T 1m9s_A 19 AFAETIKDNLKK-KSVTDAVT---QNELNSIDQIIANNSD-IKS--VQ--------GIQYLPNVTKLFLNGN-KLTDIKP 82 (605)
T ss_dssp HHHHHHHHHTTC-SCTTSEEC---HHHHTTCCCCBCTTCC-CCC--CT--------TGGGCTTCCEEECTTS-CCCCCGG
T ss_pred HHHHHHHHhccC-CCcccccc---hhcCCCCCEEECcCCC-CCC--Ch--------HHccCCCCCEEEeeCC-CCCCChh
Confidence 456677777776 55666533 4688999999999875 331 11 2347999999999988 4666654
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|+.|++++|. +. .+ +.+..+++|+.|++++|. +..+ ..+..+++|
T Consensus 83 ----l~~l~~L~~L~Ls~N~--------l~------------~l-~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L 133 (605)
T 1m9s_A 83 ----LTNLKNLGWLFLDENK--------IK------------DL-SSLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQL 133 (605)
T ss_dssp ----GGGCTTCCEEECCSSC--------CC------------CC-TTSTTCTTCCEEECTTSC-CCCC---GGGGGCTTC
T ss_pred ----hccCCCCCEEECcCCC--------CC------------CC-hhhccCCCCCEEEecCCC-CCCC---ccccCCCcc
Confidence 2479999999998872 11 12 357788999999999985 5554 347889999
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++++|. +..++ .+..+++|+.|+|+++ .+..++. +..+++|+.|++++| .+..+|. +..++
T Consensus 134 ~~L~Ls~N~-l~~l~---------~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~ 197 (605)
T 1m9s_A 134 ESLYLGNNK-ITDIT---------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLK 197 (605)
T ss_dssp SEEECCSSC-CCCCG---------GGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCT
T ss_pred CEEECCCCc-cCCch---------hhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCChH-HccCC
Confidence 999999985 44442 3468899999999997 6777654 467999999999886 5666764 66899
Q ss_pred CcceeEccC
Q 020667 261 KLHEVQWPG 269 (323)
Q Consensus 261 ~L~~L~l~~ 269 (323)
+|+.|++.+
T Consensus 198 ~L~~L~L~~ 206 (605)
T 1m9s_A 198 NLDVLELFS 206 (605)
T ss_dssp TCSEEECCS
T ss_pred CCCEEEccC
Confidence 999999944
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=118.41 Aligned_cols=198 Identities=19% Similarity=0.114 Sum_probs=124.5
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCC---------CCceEEeeccc-cccCCCccccCCcCEEecc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECP---------VLKELIVMDNQ-EERKNNNVMFPQLQYLKMF 90 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~---------~l~~l~~~~~~-~~~~~~~~~l~~L~~L~l~ 90 (323)
.+++|++|++++ +.++++ |. .+++|++|+++++. +++.+.+..+. ...+. .+++|++|+++
T Consensus 79 ~l~~L~~L~Ls~-N~l~~l-p~----~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSG-NQLTSL-PV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECS-CCCSCC-CC----CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCCEEEcCC-CcCCcC-CC----CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEECc
Confidence 467888888888 567764 54 56788888887663 33433333332 22222 24677777777
Q ss_pred cccccccccccCcc--------------ccCCCCccEEEEcCCch--hhhhccCCcceeeecCCCCccccCCCCCCCCCC
Q 020667 91 NLENFTSFCTSNLG--------------ILEFPSLKELWISGCPK--FMERYNRTTNILTERGCDHLVDLVPSSTSFQNL 154 (323)
Q Consensus 91 ~~~~l~~~~~~~~~--------------~~~l~~L~~L~l~~cp~--~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L 154 (323)
+| .+..++..... ...+++|+.|++++|.- +-..+++|+.| .+.+| .+..+|. .+++|
T Consensus 150 ~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L-~L~~N-~l~~l~~---~~~~L 223 (622)
T 3g06_A 150 DN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKL-WAYNN-RLTSLPA---LPSGL 223 (622)
T ss_dssp SS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEE-ECCSS-CCSSCCC---CCTTC
T ss_pred CC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEE-ECcCC-cccccCC---CCCCC
Confidence 66 34444321100 01235666666666521 00112344444 23333 3445543 34789
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcccc
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFK 234 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 234 (323)
+.|++++| .++.+ + ..+++|+.|++++| .+..++ ..+++|+.|+++++ +++.+|.. +..
T Consensus 224 ~~L~Ls~N-~L~~l--p---~~l~~L~~L~Ls~N-~L~~lp-----------~~~~~L~~L~Ls~N-~L~~lp~~--l~~ 282 (622)
T 3g06_A 224 KELIVSGN-RLTSL--P---VLPSELKELMVSGN-RLTSLP-----------MLPSGLLSLSVYRN-QLTRLPES--LIH 282 (622)
T ss_dssp CEEECCSS-CCSCC--C---CCCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCCSCCGG--GGG
T ss_pred CEEEccCC-ccCcC--C---CCCCcCcEEECCCC-CCCcCC-----------cccccCcEEeCCCC-CCCcCCHH--Hhh
Confidence 99999988 46655 2 56789999999998 477777 26789999999997 78888753 578
Q ss_pred CCcccEEeecCCCCCcccCC
Q 020667 235 FPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 235 l~~L~~L~l~~c~~l~~lp~ 254 (323)
+++|+.|++++|+..+..|.
T Consensus 283 l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCTTCEEECCSCCCCHHHHH
T ss_pred ccccCEEEecCCCCCCcCHH
Confidence 99999999999886655443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-14 Score=130.59 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred cccCCcCEEecccccccccccccCc--c-ccCCCCccEEEEcCCc----------hhhhhccCCcceeeecCCCCccc--
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNL--G-ILEFPSLKELWISGCP----------KFMERYNRTTNILTERGCDHLVD-- 143 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~--~-~~~l~~L~~L~l~~cp----------~~~~~l~~L~~L~~i~~~~~l~~-- 143 (323)
..+++|++|+++++. +........ . ....++|++|++++|. ..+..+++|++| ++.+|. ++.
T Consensus 167 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~Ls~n~-l~~~~ 243 (461)
T 1z7x_W 167 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL-ALGSNK-LGDVG 243 (461)
T ss_dssp HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE-ECCSSB-CHHHH
T ss_pred hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE-eccCCc-CChHH
Confidence 346778888887764 332211100 0 0124577777777772 222334556655 444442 221
Q ss_pred ---cCCC-CCCCCCCCEEEeecCcCcceec---chhHHhccccccEEEEccCc
Q 020667 144 ---LVPS-STSFQNLTNLVVSCCKGLKIVL---TFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 144 ---l~~~-~~~l~~L~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~ 189 (323)
+.+. ...+++|++|++++|. ++... .+..+..+++|++|++++|.
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 1111 1235667777776663 33311 13334456666666666653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-13 Score=123.70 Aligned_cols=241 Identities=12% Similarity=0.011 Sum_probs=144.3
Q ss_pred ccccccccCCcccEEeeecccccceeccc---hhHhcCC-CccEEEEecCCCCceEEeeccccccCCCccc-cCCcCEEe
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSS---SIVSSFV-RLQRIEIVECPVLKELIVMDNQEERKNNNVM-FPQLQYLK 88 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~---~~~~~l~-~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~-l~~L~~L~ 88 (323)
.|..+. ..++|++|++++ +.+++..+. ..+..++ +|++|++++|. +... ...... ..+.. +++|++|+
T Consensus 14 ~~~~~~-~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~-~~~~l~---~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 14 VEEFTS-IPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFK-NSDELV---QILAAIPANVTSLN 86 (362)
T ss_dssp HHHHHT-SCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGS-CHHHHH---HHHHTSCTTCCEEE
T ss_pred HHHHHh-CCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHH-HHHHHH---HHHhccCCCccEEE
Confidence 344344 556699999999 568775441 2356788 89999999884 3311 011111 00111 38999999
Q ss_pred cccccccccccccCc--cccCC-CCccEEEEcCCch------hhh----h-ccCCcceeeecCCCCcc----ccCCCCCC
Q 020667 89 MFNLENFTSFCTSNL--GILEF-PSLKELWISGCPK------FME----R-YNRTTNILTERGCDHLV----DLVPSSTS 150 (323)
Q Consensus 89 l~~~~~l~~~~~~~~--~~~~l-~~L~~L~l~~cp~------~~~----~-l~~L~~L~~i~~~~~l~----~l~~~~~~ 150 (323)
+++|. ++....... ....+ ++|++|++++|.- .+. . ..+|+.| ++.+|..-. .++..+..
T Consensus 87 Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~N~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 87 LSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL-NLRGNDLGIKSSDELIQILAA 164 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE-ECTTSCGGGSCHHHHHHHHHT
T ss_pred CcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE-EccCCcCCHHHHHHHHHHHhc
Confidence 99985 443332210 01234 7999999999931 111 1 1467777 566654331 22223334
Q ss_pred CC-CCCEEEeecCcCcceecch---hHHhcc-ccccEEEEccCcccceeeeccCccccccccc-ccccCeeecccccccc
Q 020667 151 FQ-NLTNLVVSCCKGLKIVLTF---SIAKTL-VRLEYMEIESCDRITEIVLVDDVAAKDEVIT-FRELKELKLLNLESLT 224 (323)
Q Consensus 151 l~-~L~~L~l~~c~~l~~l~~~---~~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~L~~L~l~~c~~L~ 224 (323)
++ +|++|++++|. ++..... ..+..+ ++|++|++++|. ++..... .....+.. .++|++|+++++ .++
T Consensus 165 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~---~l~~~l~~~~~~L~~L~Ls~N-~l~ 238 (362)
T 3goz_A 165 IPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYA---ELAYIFSSIPNHVVSLNLCLN-CLH 238 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHH---HHHHHHHHSCTTCCEEECCSS-CCC
T ss_pred CCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHH---HHHHHHhcCCCCceEEECcCC-CCC
Confidence 44 89999999985 5443211 133445 599999999986 4431100 00012223 359999999996 666
Q ss_pred eecCC---CccccCCcccEEeecCCC-------CCcccCCCCCCCCCcceeEccC
Q 020667 225 SFCSG---NCAFKFPSLERLVLDDCP-------SMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 225 ~l~~~---~~~~~l~~L~~L~l~~c~-------~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
..+.. .....+++|++|++++|. .+..++..+..+++|++|++.+
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 65331 122467899999999886 1335666677888999999944
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-13 Score=122.67 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=140.0
Q ss_pred ccccCCcccEEeeecc--cccceeccchh------HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEec
Q 020667 18 MSCGIQNLMHLTLRSC--MNLRYLFSSSI------VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKM 89 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c--~~l~~~~p~~~------~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l 89 (323)
+. .+++|++|+|++| +.+++.+|..+ +..+++|++|+++++..-. ......+..+..+++|++|++
T Consensus 56 l~-~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~L~~L~L 129 (386)
T 2ca6_A 56 IA-SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-----TAQEPLIDFLSKHTPLEHLYL 129 (386)
T ss_dssp TT-TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-----TTHHHHHHHHHHCTTCCEEEC
T ss_pred HH-hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH-----HHHHHHHHHHHhCCCCCEEEC
Confidence 55 7999999999987 55555556553 3688999999999875221 000112233447899999999
Q ss_pred ccccccccccccCc--cccCC---------CCccEEEEcCCc----------hhhhhccCCcceeeecCCCCcc-----c
Q 020667 90 FNLENFTSFCTSNL--GILEF---------PSLKELWISGCP----------KFMERYNRTTNILTERGCDHLV-----D 143 (323)
Q Consensus 90 ~~~~~l~~~~~~~~--~~~~l---------~~L~~L~l~~cp----------~~~~~l~~L~~L~~i~~~~~l~-----~ 143 (323)
++|. ++....... ....+ ++|++|++++|. ..+..+++|+.| .+.+|.... -
T Consensus 130 ~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 130 HNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV-KMVQNGIRPEGIEHL 207 (386)
T ss_dssp CSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE-ECCSSCCCHHHHHHH
T ss_pred cCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE-ECcCCCCCHhHHHHH
Confidence 9985 332211100 01123 899999999983 123346677777 566664331 2
Q ss_pred cCCCCCCCCCCCEEEeecCcCc----ceecchhHHhccccccEEEEccCcccceeeeccCccccccc--ccccccCeeec
Q 020667 144 LVPSSTSFQNLTNLVVSCCKGL----KIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEV--ITFRELKELKL 217 (323)
Q Consensus 144 l~~~~~~l~~L~~L~l~~c~~l----~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~--~~~~~L~~L~l 217 (323)
++..+..+++|++|++++|..- ..+ +..+..+++|++|++++|. +...... .....+ +.+++|+.|++
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l--~~~l~~~~~L~~L~L~~n~-i~~~~~~---~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSAL--AIALKSWPNLRELGLNDCL-LSARGAA---AVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHH--HHHGGGCTTCCEEECTTCC-CCHHHHH---HHHHHHHTCSSCCCCEEEC
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHH--HHHHccCCCcCEEECCCCC-CchhhHH---HHHHHHhhccCCCeEEEEC
Confidence 2336778999999999998631 333 4567889999999999987 3332100 000112 23899999999
Q ss_pred ccccccce-----ecCCCccccCCcccEEeecCCCCC
Q 020667 218 LNLESLTS-----FCSGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 218 ~~c~~L~~-----l~~~~~~~~l~~L~~L~l~~c~~l 249 (323)
++| .++. ++... ..++++|++|++++|+.-
T Consensus 282 ~~n-~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 282 QYN-EIELDAVRTLKTVI-DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSS-CCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSC
T ss_pred cCC-cCCHHHHHHHHHHH-HhcCCCceEEEccCCcCC
Confidence 997 5665 44321 245899999999997644
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-14 Score=133.14 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=76.8
Q ss_pred ccccCCcccEEeeeccccccee--cc-----------chhHhcCCCccEEEEecCCCCceEEeeccccccCCCcc-ccCC
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYL--FS-----------SSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNV-MFPQ 83 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~--~p-----------~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~-~l~~ 83 (323)
+. .+++|++|++++|..+.+. .| ..+...+++|++|++++|. +.. . ....+. .+++
T Consensus 62 ~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~-----~---~~~~l~~~~~~ 131 (594)
T 2p1m_B 62 IR-RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTD-----D---CLELIAKSFKN 131 (594)
T ss_dssp HH-HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCH-----H---HHHHHHHHCTT
T ss_pred Hh-hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcH-----H---HHHHHHHhCCC
Confidence 44 8999999999998766532 11 1224578999999999763 210 0 000011 3566
Q ss_pred cCEEeccccccccc--ccccCccccCCCCccEEEEcCCc------hhhh----hccCCcceeeecCCC-Cc--cccCCCC
Q 020667 84 LQYLKMFNLENFTS--FCTSNLGILEFPSLKELWISGCP------KFME----RYNRTTNILTERGCD-HL--VDLVPSS 148 (323)
Q Consensus 84 L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~cp------~~~~----~l~~L~~L~~i~~~~-~l--~~l~~~~ 148 (323)
|++|++.+|..++. ++.. ...+++|++|++++|. ..+. .+++|+.| ++.+|. .+ ..+..-.
T Consensus 132 L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL-NISCLASEVSFSALERLV 207 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE-ECTTCCSCCCHHHHHHHH
T ss_pred CcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE-EecccCCcCCHHHHHHHH
Confidence 66666666644433 2211 1245666666666653 1111 22344444 344443 01 0111111
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEE
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEI 185 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l 185 (323)
..+++|++|++++|..++.+ +..+..+++|++|++
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLEELGT 242 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHH--HHHHHHCTTCSEEEC
T ss_pred HhCCCCcEEecCCCCcHHHH--HHHHhcCCcceEccc
Confidence 23456666666665444443 344455555555553
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-12 Score=110.95 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=136.5
Q ss_pred cCCcccEEeeecccccceeccchhH-hcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIV-SSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFC 99 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~-~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 99 (323)
.+++|++|++++ +.+++..|..++ ..+++|++|+++++..-. ..+. .. ...+..+++|++|+++++. +..++
T Consensus 89 ~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--~~~~-~~--~~~~~~~~~L~~L~Ls~n~-l~~~~ 161 (310)
T 4glp_A 89 AYSRLKELTLED-LKITGTMPPLPLEATGLALSSLRLRNVSWAT--GRSW-LA--ELQQWLKPGLKVLSIAQAH-SPAFS 161 (310)
T ss_dssp HHSCCCEEEEES-CCCBSCCCCCSSSCCCBCCSSCEEESCCCSS--TTSS-HH--HHHTTBCSCCCEEEEECCS-SCCCC
T ss_pred ccCceeEEEeeC-CEeccchhhhhhhccCCCCCEEEeecccccc--hhhh-hH--HHHhhhccCCCEEEeeCCC-cchhh
Confidence 467899999999 567777676533 789999999999875432 0000 00 0111268899999999884 55555
Q ss_pred ccCccccCCCCccEEEEcCCchh----------hhhccCCcceeeecCCCCccccCCC----CCCCCCCCEEEeecCcCc
Q 020667 100 TSNLGILEFPSLKELWISGCPKF----------MERYNRTTNILTERGCDHLVDLVPS----STSFQNLTNLVVSCCKGL 165 (323)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~cp~~----------~~~l~~L~~L~~i~~~~~l~~l~~~----~~~l~~L~~L~l~~c~~l 165 (323)
... +..+++|++|++++|.-. ...+++|+.| .+.+|. ++.++.. +..+++|++|++++|. +
T Consensus 162 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l 236 (310)
T 4glp_A 162 CEQ--VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-ALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-L 236 (310)
T ss_dssp TTS--CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-BCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-C
T ss_pred HHH--hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-ECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-C
Confidence 433 357899999999999521 1345566666 466653 3433321 3567999999999986 4
Q ss_pred ceecchhHHhcc---ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEe
Q 020667 166 KIVLTFSIAKTL---VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLV 242 (323)
Q Consensus 166 ~~l~~~~~l~~l---~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~ 242 (323)
+... |..+..+ ++|++|++++|. ++.+| .. .+++|++|+++++ +++.++. ...+++|++|+
T Consensus 237 ~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp--------~~--~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~ 300 (310)
T 4glp_A 237 RATV-NPSAPRCMWSSALNSLNLSFAG-LEQVP--------KG--LPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLT 300 (310)
T ss_dssp CCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCC--------SC--CCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEE
T ss_pred Cccc-hhhHHhccCcCcCCEEECCCCC-CCchh--------hh--hcCCCCEEECCCC-cCCCCch---hhhCCCccEEE
Confidence 4431 2223444 799999999876 56776 22 2489999999996 7887754 35789999999
Q ss_pred ecCCCC
Q 020667 243 LDDCPS 248 (323)
Q Consensus 243 l~~c~~ 248 (323)
+++++.
T Consensus 301 L~~N~l 306 (310)
T 4glp_A 301 LDGNPF 306 (310)
T ss_dssp CSSTTT
T ss_pred CcCCCC
Confidence 988753
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=104.34 Aligned_cols=154 Identities=15% Similarity=0.207 Sum_probs=92.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|++++ ++++++.+.. ++.+++|++|+++++. +.. +. +..+..+++|++|+++++ .+..++...
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~--~~------~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 102 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDAT-FRGLTKLTWLNLDYNQ-LQT--LS------AGVFDDLTELGTLGLANN-QLASLPLGV 102 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTT-TTTCTTCCEEECTTSC-CCC--CC------TTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred CCCCEEEccC-CCcCccCHhH-hcCcccCCEEECCCCc-CCc--cC------HhHhccCCcCCEEECCCC-cccccChhH
Confidence 4566666666 4555543322 5566666666666643 221 11 111225666666666665 344444332
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCC-CCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++| .+..+++. +..+++|++|++++|. ++.++ +..+..+++|+
T Consensus 103 --~~~l~~L~~L~L~~N--------------------~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~ 158 (251)
T 3m19_A 103 --FDHLTQLDKLYLGGN--------------------QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIP-AGAFDKLTNLQ 158 (251)
T ss_dssp --TTTCTTCCEEECCSS--------------------CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCC
T ss_pred --hcccCCCCEEEcCCC--------------------cCCCcChhHhccCCcccEEECcCCc-CCccC-HHHcCcCcCCC
Confidence 135566666666554 23344443 4678899999999884 56553 33577889999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
.|++++|. +..++ ...+..+++|+.|++.++
T Consensus 159 ~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 159 TLSLSTNQ-LQSVP-------HGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSC
T ss_pred EEECCCCc-CCccC-------HHHHhCCCCCCEEEeeCC
Confidence 99999875 55554 133457889999999885
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-13 Score=124.30 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred cCCcccEEeeeccccccee----ccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccC----CcCEEecccc
Q 020667 21 GIQNLMHLTLRSCMNLRYL----FSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFP----QLQYLKMFNL 92 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~----~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~----~L~~L~l~~~ 92 (323)
.+++|++|++++|. +++. ++.. +..+++|++|+++++. +..... .... ..++ +|++|++++|
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-l~~~~~-~~l~------~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSA-LRVNPALAELNLRSNE-LGDVGV-HCVL------QGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHH-HHTCTTCCEEECTTCC-CHHHHH-HHHH------HTTCSTTCCCCEEECTTS
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHH-HHhCCCcCEEeCCCCc-CChHHH-HHHH------HHHhhCCCceeEEEccCC
Confidence 78999999999864 5532 2322 5678999999998764 221000 0000 0233 5777777776
Q ss_pred cccc-----cccccCccccCCCCccEEEEcCCchh------hh-h----ccCCcceeeecCCCCcc----ccCCCCCCCC
Q 020667 93 ENFT-----SFCTSNLGILEFPSLKELWISGCPKF------ME-R----YNRTTNILTERGCDHLV----DLVPSSTSFQ 152 (323)
Q Consensus 93 ~~l~-----~~~~~~~~~~~l~~L~~L~l~~cp~~------~~-~----l~~L~~L~~i~~~~~l~----~l~~~~~~l~ 152 (323)
. ++ .++.. ...+++|++|++++|+-. +. . .++|++| .+.+|.... .++..+..++
T Consensus 96 ~-i~~~~~~~l~~~---l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L-~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 96 C-LTGAGCGVLSST---LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL-QLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp C-CBGGGHHHHHHH---TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCBGGGHHHHHHHHHHCT
T ss_pred C-CCHHHHHHHHHH---HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEE-ECCCCCCCHHHHHHHHHHHhhCC
Confidence 3 33 22322 236677777777777311 11 1 2245555 455553222 1222233455
Q ss_pred CCCEEEeecCc
Q 020667 153 NLTNLVVSCCK 163 (323)
Q Consensus 153 ~L~~L~l~~c~ 163 (323)
+|++|++++|.
T Consensus 171 ~L~~L~L~~n~ 181 (461)
T 1z7x_W 171 DFKELTVSNND 181 (461)
T ss_dssp TCCEEECCSSB
T ss_pred CCCEEECcCCC
Confidence 66666666654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-11 Score=99.06 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=76.1
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEE
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLV 158 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~ 158 (323)
.+++|++|+++++ .++.++... +..+++|++|++++|. +..+++ .+..+++|++|+
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~--------------------l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 50 ELTSLTQLYLGGN-KLQSLPNGV--FNKLTSLTYLNLSTNQ--------------------LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEE
T ss_pred ccccCcEEECCCC-ccCccChhh--cCCCCCcCEEECCCCc--------------------CCccCHhHhcCccCCCEEE
Confidence 5666666666665 344444432 1356666666666541 111222 234566677777
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL 238 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 238 (323)
++++. ++.++ +..+..+++|++|++++|. +..++ ...+..+++|+.|++.+++ + ...+++|
T Consensus 107 L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N~-~--------~~~~~~l 167 (208)
T 2o6s_A 107 LNTNQ-LQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVP-------DGVFDRLTSLQYIWLHDNP-W--------DCTCPGI 167 (208)
T ss_dssp CCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSCC-B--------CCCTTTT
T ss_pred cCCCc-CcccC-HhHhccCCcCCEEECCCCc-cceeC-------HHHhccCCCccEEEecCCC-e--------ecCCCCH
Confidence 76663 44432 2234566777777777653 44443 1223456677777777652 1 1235677
Q ss_pred cEEeecCCCCCcccCCCCCCCC
Q 020667 239 ERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 239 ~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
++|+++.+...+.+|..+..++
T Consensus 168 ~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 168 RYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHHhCCceeeccCcccc
Confidence 7777776666667776555443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-11 Score=105.26 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=103.4
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+++.+++.+ +.++++ +. +..+++|++|+++++. +..+ + .+..+++|++|+++++ .+..++.
T Consensus 17 ~l~~l~~l~l~~-~~i~~~-~~--~~~l~~L~~L~l~~n~-i~~l--~--------~l~~l~~L~~L~L~~N-~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDL-VS--QKELSGVQNFNGDNSN-IQSL--A--------GMQFFTNLKELHLSHN-QISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSE-EC--HHHHTTCSEEECTTSC-CCCC--T--------TGGGCTTCCEEECCSS-CCCCCGG
T ss_pred HHHHHHHHHhcC-CCcccc-cc--hhhcCcCcEEECcCCC-cccc--h--------HHhhCCCCCEEECCCC-ccCCChh
Confidence 466777777776 566665 43 5678888888888763 3311 1 2336778888888776 4555554
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|. + ..++. +.. ++|++|++++|. ++.+ + .+..+++|
T Consensus 81 -l---~~l~~L~~L~L~~N~--------l------------~~l~~-~~~-~~L~~L~L~~N~-l~~~--~-~l~~l~~L 130 (263)
T 1xeu_A 81 -L---KDLTKLEELSVNRNR--------L------------KNLNG-IPS-ACLSRLFLDNNE-LRDT--D-SLIHLKNL 130 (263)
T ss_dssp -G---TTCSSCCEEECCSSC--------C------------SCCTT-CCC-SSCCEEECCSSC-CSBS--G-GGTTCTTC
T ss_pred -h---ccCCCCCEEECCCCc--------c------------CCcCc-ccc-CcccEEEccCCc-cCCC--h-hhcCcccc
Confidence 2 367888888887762 1 11111 222 677777777763 4444 2 36677777
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
+.|++++|. ++.++ .+..+++|+.|+++++ .++.+ .....+++|++|++++++
T Consensus 131 ~~L~Ls~N~-i~~~~---------~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 131 EILSIRNNK-LKSIV---------MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSC-CCBCG---------GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred cEEECCCCc-CCCCh---------HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 777777764 44443 2346777777777775 55555 123567777777777654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=96.75 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=118.6
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCC-CCCCCCCCEEE
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNLTNLV 158 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L~~L~ 158 (323)
..++|++|+++++ .+..++... +..+++|++|++++|. +..+++. +..+++|++|+
T Consensus 26 ~~~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~--------------------l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 26 IPAQTTYLDLETN-SLKSLPNGV--FDELTSLTQLYLGGNK--------------------LQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp CCTTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSC--------------------CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCcEEEcCCC-ccCcCChhh--hcccccCcEEECCCCc--------------------cCccChhhcCCCCCcCEEE
Confidence 4568999999987 566666543 2478899999988751 2223332 46789999999
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcc
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSL 238 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 238 (323)
+++|. ++.++ +..+..+++|++|+++++. +..++ ...+..+++|+.|+++++ .++.++... +..+++|
T Consensus 83 Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L 150 (208)
T 2o6s_A 83 LSTNQ-LQSLP-NGVFDKLTQLKELALNTNQ-LQSLP-------DGVFDKLTQLKDLRLYQN-QLKSVPDGV-FDRLTSL 150 (208)
T ss_dssp CCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTC
T ss_pred CCCCc-CCccC-HhHhcCccCCCEEEcCCCc-CcccC-------HhHhccCCcCCEEECCCC-ccceeCHHH-hccCCCc
Confidence 99885 55542 3446789999999999875 55555 123467899999999996 677776643 4678999
Q ss_pred cEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchhhhceeeec
Q 020667 239 ERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKVIF 288 (323)
Q Consensus 239 ~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~~ 288 (323)
++|++++++.. ..+++|+.|++ ..+.+.|.+|..+..+..
T Consensus 151 ~~L~l~~N~~~-------~~~~~l~~L~~---~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWD-------CTCPGIRYLSE---WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBC-------CCTTTTHHHHH---HHHHCTTTBBCTTSSBCT
T ss_pred cEEEecCCCee-------cCCCCHHHHHH---HHHhCCceeeccCccccC
Confidence 99999998543 25678999988 667788888887765544
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=96.15 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=75.9
Q ss_pred ccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCcc
Q 020667 25 LMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLG 104 (323)
Q Consensus 25 L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 104 (323)
-+.++.++ ++++.+ |.. -.++|++|+++++..-. . .+..+..+++|++|+++++ .+..++...
T Consensus 21 ~~~v~c~~-~~l~~i-p~~---~~~~L~~L~Ls~n~i~~--~-------~~~~~~~l~~L~~L~L~~N-~l~~i~~~~-- 83 (229)
T 3e6j_A 21 GTTVDCRS-KRHASV-PAG---IPTNAQILYLHDNQITK--L-------EPGVFDSLINLKELYLGSN-QLGALPVGV-- 83 (229)
T ss_dssp TTEEECTT-SCCSSC-CSC---CCTTCSEEECCSSCCCC--C-------CTTTTTTCTTCCEEECCSS-CCCCCCTTT--
T ss_pred CCEeEccC-CCcCcc-CCC---CCCCCCEEEcCCCccCc--c-------CHHHhhCccCCcEEECCCC-CCCCcChhh--
Confidence 45566655 455553 543 23667777776653221 1 1112235667777777665 345555432
Q ss_pred ccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCC-CCCCCCCCEEEeecCcCcceecchhHHhccccccEE
Q 020667 105 ILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPS-STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYM 183 (323)
Q Consensus 105 ~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 183 (323)
+..+++|++|++++|. +..+++. +..+++|++|+++++. ++.+ +..+..+++|+.|
T Consensus 84 ~~~l~~L~~L~Ls~N~--------------------l~~l~~~~~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L 140 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQ--------------------LTVLPSAVFDRLVHLKELFMCCNK-LTEL--PRGIERLTHLTHL 140 (229)
T ss_dssp TTTCTTCCEEECCSSC--------------------CCCCCTTTTTTCTTCCEEECCSSC-CCSC--CTTGGGCTTCSEE
T ss_pred cccCCCcCEEECCCCc--------------------CCccChhHhCcchhhCeEeccCCc-cccc--CcccccCCCCCEE
Confidence 1356677777766641 1122221 3455666666666653 4444 3345566666666
Q ss_pred EEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 184 EIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 184 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
++++|. +..++ ...+..+++|+.|++.+
T Consensus 141 ~L~~N~-l~~~~-------~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 141 ALDQNQ-LKSIP-------HGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp ECCSSC-CCCCC-------TTTTTTCTTCCEEECTT
T ss_pred ECCCCc-CCccC-------HHHHhCCCCCCEEEeeC
Confidence 666653 44443 12234556666666665
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=98.26 Aligned_cols=152 Identities=14% Similarity=0.211 Sum_probs=111.7
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. .+++|++|++++ ++++.+ |. +..+++|++|+++++. +.. ++. +..+++|++|+++++ .++
T Consensus 36 ~~~-~l~~L~~L~l~~-n~i~~l-~~--l~~l~~L~~L~L~~N~-i~~--~~~--------l~~l~~L~~L~L~~N-~l~ 98 (263)
T 1xeu_A 36 SQK-ELSGVQNFNGDN-SNIQSL-AG--MQFFTNLKELHLSHNQ-ISD--LSP--------LKDLTKLEELSVNRN-RLK 98 (263)
T ss_dssp CHH-HHTTCSEEECTT-SCCCCC-TT--GGGCTTCCEEECCSSC-CCC--CGG--------GTTCSSCCEEECCSS-CCS
T ss_pred chh-hcCcCcEEECcC-CCcccc-hH--HhhCCCCCEEECCCCc-cCC--Chh--------hccCCCCCEEECCCC-ccC
Confidence 356 899999999999 578875 64 7899999999999874 441 111 448999999999998 566
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
.++.. .. ++|+.|++++|. +. .+ +.+..+++|+.|++++|. ++.+ + .+..
T Consensus 99 ~l~~~----~~-~~L~~L~L~~N~--------l~------------~~-~~l~~l~~L~~L~Ls~N~-i~~~--~-~l~~ 148 (263)
T 1xeu_A 99 NLNGI----PS-ACLSRLFLDNNE--------LR------------DT-DSLIHLKNLEILSIRNNK-LKSI--V-MLGF 148 (263)
T ss_dssp CCTTC----CC-SSCCEEECCSSC--------CS------------BS-GGGTTCTTCCEEECTTSC-CCBC--G-GGGG
T ss_pred CcCcc----cc-CcccEEEccCCc--------cC------------CC-hhhcCcccccEEECCCCc-CCCC--h-HHcc
Confidence 66543 13 899999998872 11 12 236678899999999885 6665 2 4788
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
+++|+.|++++|. +..+. .+..+++|+.|+++++ .+...
T Consensus 149 l~~L~~L~L~~N~-i~~~~---------~l~~l~~L~~L~l~~N-~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNE-ITNTG---------GLTRLKKVNWIDLTGQ-KCVNE 187 (263)
T ss_dssp CTTCCEEECTTSC-CCBCT---------TSTTCCCCCEEEEEEE-EEECC
T ss_pred CCCCCEEECCCCc-CcchH---------HhccCCCCCEEeCCCC-cccCC
Confidence 9999999999875 44432 2357889999999985 44444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-10 Score=93.38 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=71.1
Q ss_pred cEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccc
Q 020667 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGI 105 (323)
Q Consensus 26 ~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 105 (323)
+++++++ +.++.+ |.. -.+.++.|+++++. +..+.... .+..+++|++|+++++ .+..++... +
T Consensus 14 ~~l~~s~-n~l~~i-P~~---~~~~~~~L~L~~N~-l~~~~~~~-------~~~~l~~L~~L~L~~N-~i~~i~~~~--~ 77 (220)
T 2v70_A 14 TTVDCSN-QKLNKI-PEH---IPQYTAELRLNNNE-FTVLEATG-------IFKKLPQLRKINFSNN-KITDIEEGA--F 77 (220)
T ss_dssp TEEECCS-SCCSSC-CSC---CCTTCSEEECCSSC-CCEECCCC-------CGGGCTTCCEEECCSS-CCCEECTTT--T
T ss_pred CEeEeCC-CCcccC-ccC---CCCCCCEEEcCCCc-CCccCchh-------hhccCCCCCEEECCCC-cCCEECHHH--h
Confidence 4566665 455553 443 12345666666543 33111011 1125666666666665 344444422 2
Q ss_pred cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEE
Q 020667 106 LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYME 184 (323)
Q Consensus 106 ~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 184 (323)
..+++|++|++++|. +..+++ .+..+++|++|++++|. ++.+. +..+..+++|+.|+
T Consensus 78 ~~l~~L~~L~Ls~N~--------------------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 78 EGASGVNEILLTSNR--------------------LENVQHKMFKGLESLKTLMLRSNR-ITCVG-NDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCTTCCEEECCSSC--------------------CCCCCGGGGTTCSSCCEEECTTSC-CCCBC-TTSSTTCTTCSEEE
T ss_pred CCCCCCCEEECCCCc--------------------cCccCHhHhcCCcCCCEEECCCCc-CCeEC-HhHcCCCccCCEEE
Confidence 356666666666541 111111 23455566666666553 33321 23345556666666
Q ss_pred EccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 185 IESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 185 l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
+++|. +..++ ...+..+++|+.|++.+
T Consensus 136 L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 136 LYDNQ-ITTVA-------PGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSC-CCCBC-------TTTTTTCTTCCEEECCS
T ss_pred CCCCc-CCEEC-------HHHhcCCCCCCEEEecC
Confidence 66543 33332 12334556666666665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-12 Score=124.54 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=61.9
Q ss_pred ccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccc
Q 020667 143 DLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLES 222 (323)
Q Consensus 143 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 222 (323)
.+|. +..+++|+.|++++|. ++.+ |..++++++|+.|++++|. +..+| .++.+++|+.|+++++ +
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp---------~l~~l~~L~~L~Ls~N-~ 519 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNR-LRAL--PPALAALRCLEVLQASDNA-LENVD---------GVANLPRLQELLLCNN-R 519 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSC-CCCC--CGGGGGCTTCCEEECCSSC-CCCCG---------GGTTCSSCCEEECCSS-C
T ss_pred CCcC-ccccccCcEeecCccc-cccc--chhhhcCCCCCEEECCCCC-CCCCc---------ccCCCCCCcEEECCCC-C
Confidence 3443 6666777777777664 4444 4456677777777777654 44443 2356677777777774 5
Q ss_pred cceec-CCCccccCCcccEEeecCCCCCcccCCCCC----CCCCcceeE
Q 020667 223 LTSFC-SGNCAFKFPSLERLVLDDCPSMKIFSEGNS----STPKLHEVQ 266 (323)
Q Consensus 223 L~~l~-~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~----~~~~L~~L~ 266 (323)
++.+. +. .+..+++|++|++++++ +..+|.... .+|+|+.|+
T Consensus 520 l~~~~~p~-~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQ-PLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTG-GGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcH-HHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 66653 11 23567777777776643 444443321 256666654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=91.71 Aligned_cols=131 Identities=20% Similarity=0.275 Sum_probs=78.4
Q ss_pred cCCcccEEeeecccccc-eeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc-c
Q 020667 21 GIQNLMHLTLRSCMNLR-YLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS-F 98 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~-~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~ 98 (323)
..++|++|++++| .++ +.+|.. +..+++|++|++++|. ++.+ . .+..+++|++|+++++. +.. +
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~---~-------~~~~l~~L~~L~Ls~N~-l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVG-LISV---S-------NLPKLPKLKKLELSENR-IFGGL 87 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC---S-------SCCCCSSCCEEEEESCC-CCSCC
T ss_pred CcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh---h-------hhccCCCCCEEECcCCc-CchHH
Confidence 4678888888884 465 234654 5778888888888875 4422 1 22367788888888774 443 3
Q ss_pred cccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC--CCCCCCCCCCEEEeecCcCcceecc--hhHH
Q 020667 99 CTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV--PSSTSFQNLTNLVVSCCKGLKIVLT--FSIA 174 (323)
Q Consensus 99 ~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~--~~~l 174 (323)
+.. ...+++|++|++++|. +..++ ..+..+++|++|++++|. ++.++. ...+
T Consensus 88 ~~~---~~~l~~L~~L~Ls~N~--------------------l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 143 (168)
T 2ell_A 88 DML---AEKLPNLTHLNLSGNK--------------------LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVF 143 (168)
T ss_dssp CHH---HHHCTTCCEEECBSSS--------------------CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHH
T ss_pred HHH---HhhCCCCCEEeccCCc--------------------cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHH
Confidence 332 1247777777777652 11111 234556677777777764 333321 0245
Q ss_pred hccccccEEEEccCc
Q 020667 175 KTLVRLEYMEIESCD 189 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~ 189 (323)
..+++|++|++++|.
T Consensus 144 ~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 144 KLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCSSCCEETTEETT
T ss_pred HhCccCcEecCCCCC
Confidence 666777777766664
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.08 E-value=9.5e-10 Score=92.03 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
..+++|++|++++|. ++.+. +..+..+++|+.|++++|. +..++ ...+..+++|+.|++.+
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLR-VDAFQDLHNLNLLSLYDNK-LQTIA-------KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCC-CCEeC-HHHcCCCCCCCEEECCCCc-CCEEC-------HHHHhCCCCCCEEEeCC
Confidence 345556666665553 33321 2334555666666666543 33333 11233455666666655
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-09 Score=89.71 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=57.7
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+++++. ++.+. +..+.++++|++|+++++. +..++ ...+..+++|+.|+++++ .++.++
T Consensus 52 ~~~l~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~f~~l~~L~~L~L~~N-~l~~~~ 120 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQ-ISELA-PDAFQGLRSLNSLVLYGNK-ITELP-------KSLFEGLFSLQLLLLNAN-KINCLR 120 (220)
T ss_dssp STTCTTCCEEECCSSC-CCEEC-TTTTTTCSSCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred hhCCCCCCEEECCCCc-CCCcC-HHHhhCCcCCCEEECCCCc-CCccC-------HhHccCCCCCCEEECCCC-CCCEeC
Confidence 4455566666666553 33331 3345556666666666553 44444 112245566666666664 555554
Q ss_pred CCCccccCCcccEEeecCCCCCcccCC-CCCCCCCcceeEc
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMKIFSE-GNSSTPKLHEVQW 267 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~L~l 267 (323)
... +..+++|++|+++++ .++.++. .+..+++|+.|++
T Consensus 121 ~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 121 VDA-FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred HHH-cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEe
Confidence 432 345667777777664 3444443 3445667777777
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-09 Score=89.64 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=54.3
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
..+++|++|+++++. ++.++ +..+.++++|++|+++++. +..++ ...+..+++|++|+++++ +++.++.
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~ 122 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNR-LENVQ-------HKMFKGLESLKTLMLRSN-RITCVGN 122 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCCCC-------GGGGTTCSSCCEEECTTS-CCCCBCT
T ss_pred ccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCc-cCccC-------HhHhcCCcCCCEEECCCC-cCCeECH
Confidence 345555555555553 33332 2234555566666665543 33333 122345566666666663 4555533
Q ss_pred CCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
.. +..+++|++|+++++..-+..|..+..+++|+.|++
T Consensus 123 ~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 123 DS-FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TS-STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred hH-cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 22 345566666666664322222555556666666666
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-10 Score=105.65 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=119.4
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++|++|++++ ++++.+ | +.+++|++|+++++ .+.. ++. + .. +|++|+++++ .++.++.
T Consensus 79 ~~~L~~L~Ls~-N~l~~i-p----~~l~~L~~L~Ls~N-~l~~--ip~-l-------~~--~L~~L~Ls~N-~l~~lp~- 137 (571)
T 3cvr_A 79 PPQITVLEITQ-NALISL-P----ELPASLEYLDACDN-RLST--LPE-L-------PA--SLKHLDVDNN-QLTMLPE- 137 (571)
T ss_dssp CTTCSEEECCS-SCCSCC-C----CCCTTCCEEECCSS-CCSC--CCC-C-------CT--TCCEEECCSS-CCSCCCC-
T ss_pred cCCCCEEECcC-CCCccc-c----cccCCCCEEEccCC-CCCC--cch-h-------hc--CCCEEECCCC-cCCCCCC-
Confidence 47899999999 678864 6 35799999999987 3442 222 1 12 9999999987 5666654
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
.+++|+.|++++|. +..+|. .+++|++|++++|. ++.++ . +. ++|+
T Consensus 138 -----~l~~L~~L~Ls~N~--------------------l~~lp~---~l~~L~~L~Ls~N~-L~~lp--~-l~--~~L~ 183 (571)
T 3cvr_A 138 -----LPALLEYINADNNQ--------------------LTMLPE---LPTSLEVLSVRNNQ-LTFLP--E-LP--ESLE 183 (571)
T ss_dssp -----CCTTCCEEECCSSC--------------------CSCCCC---CCTTCCEEECCSSC-CSCCC--C-CC--TTCC
T ss_pred -----cCccccEEeCCCCc--------------------cCcCCC---cCCCcCEEECCCCC-CCCcc--h-hh--CCCC
Confidence 47899999998862 222333 46799999999885 55553 3 33 8999
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN 256 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 256 (323)
.|++++|. ++.+|. - ...-....+.|+.|+++++ .++.+|... ..+++|++|++++|+..+.+|..+
T Consensus 184 ~L~Ls~N~-L~~lp~-~---~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 184 ALDVSTNL-LESLPA-V---PVRNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp EEECCSSC-CSSCCC-C---C--------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHHHHH
T ss_pred EEECcCCC-CCchhh-H---HHhhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCHHHH
Confidence 99999874 667762 0 0000011222399999996 788887644 569999999999987766666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-11 Score=109.38 Aligned_cols=215 Identities=12% Similarity=0.045 Sum_probs=130.2
Q ss_pred ccccccCC-cccEEeeecccccceeccchhHhcC-----CCccEEEEecCCCCceEEeeccccccCCCcccc-CCcCEEe
Q 020667 16 TVMSCGIQ-NLMHLTLRSCMNLRYLFSSSIVSSF-----VRLQRIEIVECPVLKELIVMDNQEERKNNNVMF-PQLQYLK 88 (323)
Q Consensus 16 ~~~~~~l~-~L~~L~L~~c~~l~~~~p~~~~~~l-----~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l-~~L~~L~ 88 (323)
..+. .++ +|++|++++ +.+++..+.. +..+ ++|++|++++|. +.. ....... ..+..+ ++|++|+
T Consensus 44 ~~l~-~~~~~L~~L~Ls~-N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l~~-~~~~~l~---~~l~~~~~~L~~L~ 115 (362)
T 3goz_A 44 QAFA-NTPASVTSLNLSG-NSLGFKNSDE-LVQILAAIPANVTSLNLSGNF-LSY-KSSDELV---KTLAAIPFTITVLD 115 (362)
T ss_dssp HHHH-TCCTTCCEEECCS-SCGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-GGG-SCHHHHH---HHHHTSCTTCCEEE
T ss_pred HHHH-hCCCceeEEECcC-CCCCHHHHHH-HHHHHhccCCCccEEECcCCc-CCh-HHHHHHH---HHHHhCCCCccEEE
Confidence 3455 788 999999999 5787754544 4443 999999999986 331 1111011 111234 7999999
Q ss_pred cccccccccccccCc--cccC-CCCccEEEEcCCch----------hhhhcc-CCcceeeecCCCCccccCC----CCCC
Q 020667 89 MFNLENFTSFCTSNL--GILE-FPSLKELWISGCPK----------FMERYN-RTTNILTERGCDHLVDLVP----SSTS 150 (323)
Q Consensus 89 l~~~~~l~~~~~~~~--~~~~-l~~L~~L~l~~cp~----------~~~~l~-~L~~L~~i~~~~~l~~l~~----~~~~ 150 (323)
+++|. ++..+.... .... .++|++|++++|.- .+..++ +|+.| .+.+|......+. .+..
T Consensus 116 Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~l~~~~~~~l~~~l~~ 193 (362)
T 3goz_A 116 LGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL-NLRGNNLASKNCAELAKFLAS 193 (362)
T ss_dssp CCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSCGGGSCHHHHHHHHHT
T ss_pred CcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe-eecCCCCchhhHHHHHHHHHh
Confidence 99985 554433211 0112 46999999999931 122233 77777 5666643322221 1233
Q ss_pred C-CCCCEEEeecCcCcceecc---hhHHhc-cccccEEEEccCcccceeeeccCcccccccccccccCeeeccccc----
Q 020667 151 F-QNLTNLVVSCCKGLKIVLT---FSIAKT-LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLE---- 221 (323)
Q Consensus 151 l-~~L~~L~l~~c~~l~~l~~---~~~l~~-l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~---- 221 (323)
+ ++|++|++++|. +++... +..+.. .++|++|++++|. ++..+... ....+..+++|+.|++++|.
T Consensus 194 ~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~---l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 194 IPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLEN---LKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHH---HHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHH---HHHHHhcCCCccEEEeccCCcccc
Confidence 4 599999999986 554211 334444 3599999999985 44433100 00122467899999999974
Q ss_pred ---ccceecCCCccccCCcccEEeecCCC
Q 020667 222 ---SLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 222 ---~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
.+..+... ...+++|++|++++++
T Consensus 269 ~~~~~~~l~~~--~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 269 SKEQCKALGAA--FPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHHHTT--STTCCEEEEECTTSCB
T ss_pred CHHHHHHHHHH--hccCCceEEEecCCCc
Confidence 12223222 2467889999998865
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-09 Score=88.86 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=90.8
Q ss_pred cCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCc
Q 020667 84 LQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCK 163 (323)
Q Consensus 84 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 163 (323)
-+.++.++. .++.+|.. ..++|++|++++|. +.. ..|..+..+++|++|++++|.
T Consensus 21 ~~~v~c~~~-~l~~ip~~-----~~~~L~~L~Ls~n~--------i~~-----------~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG-----IPTNAQILYLHDNQ--------ITK-----------LEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp TTEEECTTS-CCSSCCSC-----CCTTCSEEECCSSC--------CCC-----------CCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCC-CcCccCCC-----CCCCCCEEEcCCCc--------cCc-----------cCHHHhhCccCCcEEECCCCC
Confidence 344555443 45555543 34677777776651 111 112345567778888887775
Q ss_pred CcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEee
Q 020667 164 GLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVL 243 (323)
Q Consensus 164 ~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l 243 (323)
++.++ +..+..+++|+.|++++|. +..++ ...+..+++|+.|+++++ +++.++... ..+++|++|++
T Consensus 76 -l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~-------~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L 142 (229)
T 3e6j_A 76 -LGALP-VGVFDSLTQLTVLDLGTNQ-LTVLP-------SAVFDRLVHLKELFMCCN-KLTELPRGI--ERLTHLTHLAL 142 (229)
T ss_dssp -CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEEC
T ss_pred -CCCcC-hhhcccCCCcCEEECCCCc-CCccC-------hhHhCcchhhCeEeccCC-cccccCccc--ccCCCCCEEEC
Confidence 45442 2345677788888887763 55554 122356778888888874 677776543 67788888888
Q ss_pred cCCCCCcccCCC-CCCCCCcceeEcc
Q 020667 244 DDCPSMKIFSEG-NSSTPKLHEVQWP 268 (323)
Q Consensus 244 ~~c~~l~~lp~~-~~~~~~L~~L~l~ 268 (323)
+++ .++.+|.. +..+++|+.|++.
T Consensus 143 ~~N-~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 143 DQN-QLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCC-cCCccCHHHHhCCCCCCEEEee
Confidence 774 56666643 5567888888883
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-09 Score=94.74 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCcccEEeeecccccc
Q 020667 22 IQNLMHLTLRSCMNLR 37 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~ 37 (323)
+++|++|+|++ +.+.
T Consensus 48 l~~L~~LdLs~-n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISN-AEIK 62 (329)
T ss_dssp CTTCCEEEEEE-EEEC
T ss_pred hccCeEEecCc-ceeE
Confidence 78899999998 5565
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=97.71 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=58.2
Q ss_pred CcccEEeeecccccceeccchhHh-cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVS-SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~-~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++++|+|++ ++++++.+.. +. .+++|++|+++++. +. .++. ..+..+++|++|+++++ .+..++..
T Consensus 39 ~~l~~L~Ls~-N~l~~l~~~~-~~~~l~~L~~L~L~~N~-i~--~i~~------~~~~~l~~L~~L~Ls~N-~l~~~~~~ 106 (361)
T 2xot_A 39 SYTALLDLSH-NNLSRLRAEW-TPTRLTNLHSLLLSHNH-LN--FISS------EAFVPVPNLRYLDLSSN-HLHTLDEF 106 (361)
T ss_dssp TTCSEEECCS-SCCCEECTTS-SSSCCTTCCEEECCSSC-CC--EECT------TTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred CCCCEEECCC-CCCCccChhh-hhhcccccCEEECCCCc-CC--ccCh------hhccCCCCCCEEECCCC-cCCcCCHH
Confidence 5688899988 6788864443 55 78899999998764 44 2221 12337888999999887 46666654
Q ss_pred CccccCCCCccEEEEcCC
Q 020667 102 NLGILEFPSLKELWISGC 119 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~c 119 (323)
. +..+++|++|++++|
T Consensus 107 ~--~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 107 L--FSDLQALEVLLLYNN 122 (361)
T ss_dssp T--TTTCTTCCEEECCSS
T ss_pred H--hCCCcCCCEEECCCC
Confidence 3 247888999988887
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-10 Score=90.80 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=88.8
Q ss_pred CCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEc
Q 020667 107 EFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIE 186 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~ 186 (323)
..++|++|++++|.- . . +.+|..+..+++|++|++++|. ++.+ ..+..+++|++|+++
T Consensus 22 ~~~~L~~L~l~~n~l--------~------~----~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 22 TPAAVRELVLDNCKS--------N------D----GKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELS 79 (168)
T ss_dssp CTTSCSEEECCSCBC--------B------T----TBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEE
T ss_pred CcccCCEEECCCCCC--------C------h----hhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECc
Confidence 457888888887620 0 0 1444555678888888888876 5554 346778888888888
Q ss_pred cCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC----CCCCCCCc
Q 020667 187 SCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE----GNSSTPKL 262 (323)
Q Consensus 187 ~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~L 262 (323)
+|.....++ ..+..+++|+.|+++++ .++.++....+..+++|++|++++| .+..+|. .+..+++|
T Consensus 80 ~N~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 80 ENRIFGGLD--------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp SCCCCSCCC--------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSC
T ss_pred CCcCchHHH--------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccC
Confidence 876433243 22345888888888886 6777653223467888888888876 4555665 56678888
Q ss_pred ceeEccC
Q 020667 263 HEVQWPG 269 (323)
Q Consensus 263 ~~L~l~~ 269 (323)
++|++.+
T Consensus 150 ~~L~l~~ 156 (168)
T 2ell_A 150 TYLDGYD 156 (168)
T ss_dssp CEETTEE
T ss_pred cEecCCC
Confidence 8888844
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-09 Score=82.82 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=70.4
Q ss_pred cCCcCEEecccccccc--cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEE
Q 020667 81 FPQLQYLKMFNLENFT--SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLV 158 (323)
Q Consensus 81 l~~L~~L~l~~~~~l~--~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~ 158 (323)
.++|+.|+++++. +. .++.. +..+++|++|++++|. + ..+ ..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~---~~~l~~L~~L~l~~n~--------------l------~~~-~~~~~l~~L~~L~ 70 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGL---TDEFEELEFLSTINVG--------------L------TSI-ANLPKLNKLKKLE 70 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSC---CTTCTTCCEEECTTSC--------------C------CCC-TTCCCCTTCCEEE
T ss_pred CccCeEEEccCCc-CChhHHHHH---HhhcCCCcEEECcCCC--------------C------CCc-hhhhcCCCCCEEE
Confidence 4566777776663 33 44443 2366777777776651 1 111 2345567777777
Q ss_pred eecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC--CCccccCC
Q 020667 159 VSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS--GNCAFKFP 236 (323)
Q Consensus 159 l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~--~~~~~~l~ 236 (323)
+++|.-...+ +..+..+++|++|++++|. +..++. ...+..+++|++|+++++ .++.++. ......++
T Consensus 71 Ls~n~i~~~~--~~~~~~l~~L~~L~ls~N~-i~~~~~------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 71 LSDNRVSGGL--EVLAEKCPNLTHLNLSGNK-IKDLST------IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLP 140 (149)
T ss_dssp CCSSCCCSCT--HHHHHHCTTCCEEECTTSC-CCSHHH------HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCT
T ss_pred CCCCcccchH--HHHhhhCCCCCEEECCCCc-CCChHH------HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCC
Confidence 7776532223 4455567777777777765 333320 022355667777777765 4555543 01134566
Q ss_pred cccEEeec
Q 020667 237 SLERLVLD 244 (323)
Q Consensus 237 ~L~~L~l~ 244 (323)
+|++|+++
T Consensus 141 ~L~~L~l~ 148 (149)
T 2je0_A 141 QLTYLDGY 148 (149)
T ss_dssp TCCEETTB
T ss_pred CcccccCC
Confidence 66666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-11 Score=114.84 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=127.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEe----eccccccCCCccccCCcCEEecccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIV----MDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+++|+.|++++ +.++.+ |.+ ++++++|+.|+++++..+..+.. ....+..+..+..+++|+.|+......+.
T Consensus 347 ~~~~L~~L~Ls~-n~L~~L-p~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSV-EKSTVL-QSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp TTTTSSSCCCCH-HHHHHH-HHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cCccceeccCCh-hhHHhh-HHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 678899999998 778764 766 78889999988765421110000 00011222333456666666622222222
Q ss_pred cccccCc-----cccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcc
Q 020667 97 SFCTSNL-----GILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLK 166 (323)
Q Consensus 97 ~~~~~~~-----~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 166 (323)
.+..... .......|+.|++++| |. ++.+++|+.| .+.++ .+..+|..++.+++|+.|++++|. ++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L-~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHL-DLSHN-RLRALPPALAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEE-ECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEe-ecCcc-cccccchhhhcCCCCCEEECCCCC-CC
Confidence 2111000 0001235777777776 43 5556666666 44444 455888889999999999999985 66
Q ss_pred eecchhHHhccccccEEEEccCccccee--eeccCcccccccccccccCeeecccccccceecCCC--ccccCCcccEEe
Q 020667 167 IVLTFSIAKTLVRLEYMEIESCDRITEI--VLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN--CAFKFPSLERLV 242 (323)
Q Consensus 167 ~l~~~~~l~~l~~L~~L~l~~c~~l~~i--~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~--~~~~l~~L~~L~ 242 (323)
.+ + .++++++|+.|++++|. +..+ | ..+..+++|+.|+++++ .++.++... ....+|+|+.|+
T Consensus 500 ~l--p-~l~~l~~L~~L~Ls~N~-l~~~~~p--------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 500 NV--D-GVANLPRLQELLLCNNR-LQQSAAI--------QPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CC--G-GGTTCSSCCEEECCSSC-CCSSSTT--------GGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CC--c-ccCCCCCCcEEECCCCC-CCCCCCc--------HHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 55 4 68899999999999875 5544 4 45678999999999996 677776533 123488898885
Q ss_pred e
Q 020667 243 L 243 (323)
Q Consensus 243 l 243 (323)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=86.02 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=84.2
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcC-CCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSF-VRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l-~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
+. .+++|++|++++ +.++.+ |. +..+ ++|++|+++++. ++.+ .. +..+++|++|+++++ .+.
T Consensus 15 ~~-~~~~L~~L~l~~-n~l~~i-~~--~~~~~~~L~~L~Ls~N~-l~~~---~~-------l~~l~~L~~L~Ls~N-~l~ 77 (176)
T 1a9n_A 15 YT-NAVRDRELDLRG-YKIPVI-EN--LGATLDQFDAIDFSDNE-IRKL---DG-------FPLLRRLKTLLVNNN-RIC 77 (176)
T ss_dssp EE-CTTSCEEEECTT-SCCCSC-CC--GGGGTTCCSEEECCSSC-CCEE---CC-------CCCCSSCCEEECCSS-CCC
T ss_pred cC-CcCCceEEEeeC-CCCchh-HH--hhhcCCCCCEEECCCCC-CCcc---cc-------cccCCCCCEEECCCC-ccc
Confidence 45 788999999998 567764 54 3444 499999999874 4422 22 237888888888887 466
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC--CCCCCCCCCEEEeecCcCcceecchh--
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP--SSTSFQNLTNLVVSCCKGLKIVLTFS-- 172 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~~-- 172 (323)
.++... +..+++|++|++++|. ++++|. .+..+++|++|++++|+ +..+ +.
T Consensus 78 ~~~~~~--~~~l~~L~~L~L~~N~--------------------i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~--~~~~ 132 (176)
T 1a9n_A 78 RIGEGL--DQALPDLTELILTNNS--------------------LVELGDLDPLASLKSLTYLCILRNP-VTNK--KHYR 132 (176)
T ss_dssp EECSCH--HHHCTTCCEEECCSCC--------------------CCCGGGGGGGGGCTTCCEEECCSSG-GGGS--TTHH
T ss_pred ccCcch--hhcCCCCCEEECCCCc--------------------CCcchhhHhhhcCCCCCEEEecCCC-CCCc--HhHH
Confidence 665442 1367788888887762 112222 35567778888887775 3333 22
Q ss_pred --HHhccccccEEEEccCc
Q 020667 173 --IAKTLVRLEYMEIESCD 189 (323)
Q Consensus 173 --~l~~l~~L~~L~l~~c~ 189 (323)
.+..+++|+.|+++++.
T Consensus 133 ~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 133 LYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHHCTTCSEETTEECC
T ss_pred HHHHHHCCccceeCCCcCC
Confidence 35667777777776654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-10 Score=86.29 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCCCccEEEEcCCchhhhhccCCcceeeecCCCCc-cccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEE
Q 020667 107 EFPSLKELWISGCPKFMERYNRTTNILTERGCDHL-VDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEI 185 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l 185 (323)
.+++|+.|++++|. .. +.+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++
T Consensus 15 ~~~~l~~L~l~~n~-------------------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L 71 (149)
T 2je0_A 15 TPSDVKELVLDNSR-------------------SNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLEL 71 (149)
T ss_dssp CGGGCSEEECTTCB-------------------CBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEEC
T ss_pred CCccCeEEEccCCc-------------------CChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEEC
Confidence 34677777777652 11 2455556788999999999884 5554 45678999999999
Q ss_pred ccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC----CCCCCCC
Q 020667 186 ESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE----GNSSTPK 261 (323)
Q Consensus 186 ~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~ 261 (323)
++|.....++ ..+..+++|++|+++++ .++.++.......+++|++|++++| .++.+|. .+..+++
T Consensus 72 s~n~i~~~~~--------~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 72 SDNRVSGGLE--------VLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp CSSCCCSCTH--------HHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTT
T ss_pred CCCcccchHH--------HHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCC
Confidence 9887433344 23346899999999996 5777642123467899999999887 4566665 4567889
Q ss_pred cceeEc
Q 020667 262 LHEVQW 267 (323)
Q Consensus 262 L~~L~l 267 (323)
|+.|++
T Consensus 142 L~~L~l 147 (149)
T 2je0_A 142 LTYLDG 147 (149)
T ss_dssp CCEETT
T ss_pred cccccC
Confidence 999877
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=90.77 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=109.3
Q ss_pred cCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEe
Q 020667 81 FPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVV 159 (323)
Q Consensus 81 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l 159 (323)
.+.++.|+++++ .+..++.... ...+++|++|++++|. +..++ ..+..+++|++|++
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~-~~~l~~L~~L~L~~N~--------------------i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWT-PTRLTNLHSLLLSHNH--------------------LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSS-SSCCTTCCEEECCSSC--------------------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCC-CCCccChhhh-hhcccccCEEECCCCc--------------------CCccChhhccCCCCCCEEEC
Confidence 456899999987 5777766542 1168899999988761 22222 34678899999999
Q ss_pred ecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc--ccCCc
Q 020667 160 SCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA--FKFPS 237 (323)
Q Consensus 160 ~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~--~~l~~ 237 (323)
++|. ++.++ +..+.++++|+.|++++|. +..++ ...+..+++|+.|+++++ .++.++..... ..+++
T Consensus 96 s~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~-------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 96 SSNH-LHTLD-EFLFSDLQALEVLLLYNNH-IVVVD-------RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPK 164 (361)
T ss_dssp CSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTT
T ss_pred CCCc-CCcCC-HHHhCCCcCCCEEECCCCc-ccEEC-------HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCc
Confidence 9985 66653 3457889999999999876 55553 134567899999999995 78888764311 45899
Q ss_pred ccEEeecCCCCCcccCC-CCCCCCC--cceeEccC
Q 020667 238 LERLVLDDCPSMKIFSE-GNSSTPK--LHEVQWPG 269 (323)
Q Consensus 238 L~~L~l~~c~~l~~lp~-~~~~~~~--L~~L~l~~ 269 (323)
|++|+++++ .++.+|. .+..+++ ++.|++.+
T Consensus 165 L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 165 LMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCEEECCCC-CCCccCHHHhhhccHhhcceEEecC
Confidence 999999885 5666763 2334554 47889943
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-09 Score=104.37 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+|++|. ++.+ +..+.++++|+.|+|++|. +..+| ..++.+++|++|+|+++ .++.+|
T Consensus 243 ~~~l~~L~~L~Ls~N~-l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp--------~~~~~l~~L~~L~L~~N-~l~~lp 309 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNS-LTEL--PAEIKNLSNLRVLDLSHNR-LTSLP--------AELGSCFQLKYFYFFDN-MVTTLP 309 (727)
T ss_dssp GGGCCSCSCCBCTTSC-CSCC--CGGGGGGTTCCEEECTTSC-CSSCC--------SSGGGGTTCSEEECCSS-CCCCCC
T ss_pred hcCCCCCCEEEeeCCc-Cccc--ChhhhCCCCCCEEeCcCCc-CCccC--------hhhcCCCCCCEEECCCC-CCCccC
Confidence 3344555555555442 3333 2334445555555555443 33343 22344455555555543 444444
Q ss_pred CCCccccCCcccEEeecCCCC
Q 020667 228 SGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~ 248 (323)
.. +..+++|++|++++|+.
T Consensus 310 ~~--~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 310 WE--FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SS--TTSCTTCCCEECTTSCC
T ss_pred hh--hhcCCCccEEeCCCCcc
Confidence 32 24445555555544443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=82.12 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=90.8
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.++.+|..+. .+|++|+++++. ++.++....+..+++|++|+++++. +..++ ...+..+++|++|++++
T Consensus 19 ~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 19 GLKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-------PNAFEGASHIQELQLGE 87 (192)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-------TTTTTTCTTCCEEECCS
T ss_pred CcCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcC-------HhHcCCcccCCEEECCC
Confidence 3456665443 389999999885 5655332347889999999999876 44443 14456789999999999
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccc
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDD 278 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~ 278 (323)
+ +++.++... +..+++|++|+++++..-+..|..+..+++|++|++ ..+.|.++
T Consensus 88 N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---~~N~l~c~ 141 (192)
T 1w8a_A 88 N-KIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL---ASNPFNCN 141 (192)
T ss_dssp C-CCCEECSSS-STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC---TTCCBCCS
T ss_pred C-cCCccCHHH-hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe---CCCCccCc
Confidence 5 788887653 467899999999987655566777888999999999 55555543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=82.20 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=15.7
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+++|++|++++|. ++.++ +..+..+++|++|++++|
T Consensus 62 ~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 62 LLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTELILTNN 98 (176)
T ss_dssp CCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCc-ccccC-cchhhcCCCCCEEECCCC
Confidence 34445555554442 33331 122244445555555444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-09 Score=104.18 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=39.2
Q ss_pred hhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 43 SIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 43 ~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
..+..+++|+.|+|+++.. . .++.. +..+++|++|+|+++ .+..+|... ..+++|++|+|++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l-~--~l~~~-------~~~l~~L~~L~Ls~N-~l~~lp~~~---~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI-F--NISAN-------IFKYDFLTRLYLNGN-SLTELPAEI---KNLSNLRVLDLSHN 280 (727)
T ss_dssp ----CCCCCCEEECTTSCC-S--CCCGG-------GGGCCSCSCCBCTTS-CCSCCCGGG---GGGTTCCEEECTTS
T ss_pred hhhccCCCCcEEECCCCCC-C--CCChh-------hcCCCCCCEEEeeCC-cCcccChhh---hCCCCCCEEeCcCC
Confidence 3366778888888887653 2 22222 236778888888876 455666553 47788888887776
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=77.20 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=49.7
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+++++. ++.+. +..+.++++|++|+++++. +..++ ...+..+++|++|+++++ +++.+.
T Consensus 50 ~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~ 118 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGENK-IKEIS-------NKMFLGLHQLKTLNLYDN-QISCVM 118 (192)
T ss_dssp GGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSCC-CCEEC-------SSSSTTCTTCCEEECCSS-CCCEEC
T ss_pred cccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEEECCCCc-CCccC-------HHHhcCCCCCCEEECCCC-cCCeeC
Confidence 4455666666666654 33321 3345566666666666654 44443 122345667777777664 555554
Q ss_pred CCCccccCCcccEEeecCCCC
Q 020667 228 SGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~ 248 (323)
... +..+++|++|++++++.
T Consensus 119 ~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 119 PGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTS-STTCTTCCEEECTTCCB
T ss_pred HHH-hhcCCCCCEEEeCCCCc
Confidence 332 34567777777766554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-10 Score=94.43 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=55.9
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCchhhh
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFME 124 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~ 124 (323)
++.+++|++|+++++. +.. ++ .+..+++|++|+++++ .+..++... ..+++|++|++++|.
T Consensus 44 ~~~l~~L~~L~ls~n~-l~~--l~--------~~~~l~~L~~L~l~~n-~l~~l~~~~---~~~~~L~~L~L~~N~---- 104 (198)
T 1ds9_A 44 LSTLKACKHLALSTNN-IEK--IS--------SLSGMENLRILSLGRN-LIKKIENLD---AVADTLEELWISYNQ---- 104 (198)
T ss_dssp HHHTTTCSEEECSEEE-ESC--CC--------CHHHHTTCCEEEEEEE-EECSCSSHH---HHHHHCSEEEEEEEE----
T ss_pred HhcCCCCCEEECCCCC-Ccc--cc--------ccccCCCCCEEECCCC-Ccccccchh---hcCCcCCEEECcCCc----
Confidence 5677777777777652 221 11 2235667777777665 344444331 234566666665541
Q ss_pred hccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCc
Q 020667 125 RYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCD 189 (323)
Q Consensus 125 ~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~ 189 (323)
+..+| .+..+++|++|++++|. ++.++....+..+++|++|++++|+
T Consensus 105 ----------------l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 105 ----------------IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ----------------CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ----------------CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 01111 23345566666666553 3333212245556666666666654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=77.67 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCc
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNC 231 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 231 (323)
++|++|+++++. ++.+ +..+.++++|+.|+++++. +..++ ...+..+++|++|+++++ .++.++...
T Consensus 31 ~~l~~L~L~~n~-i~~i--p~~~~~l~~L~~L~Ls~N~-i~~i~-------~~~f~~l~~L~~L~Ls~N-~l~~i~~~~- 97 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLV--PKELSNYKHLTLIDLSNNR-ISTLS-------NQSFSNMTQLLTLILSYN-RLRCIPPRT- 97 (193)
T ss_dssp TTCCEEECCSSC-CCSC--CGGGGGCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCBCCTTT-
T ss_pred CCCCEEECCCCc-Cchh--HHHhhcccCCCEEECCCCc-CCEeC-------HhHccCCCCCCEEECCCC-ccCEeCHHH-
Confidence 456666666553 4444 2445666666666666654 33333 123345666677777664 566665432
Q ss_pred cccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 232 AFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 232 ~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
+..+++|++|+++++ .++.+|.. +..+++|+.|++
T Consensus 98 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEe
Confidence 345667777777663 45555553 445677777777
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=75.17 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=90.7
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+..+|.. ..++|++|+++++. ++.++ +..+..+++|++|+++++. +..++ ...+..+++|+.|++++
T Consensus 18 ~l~~~p~~--~~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 18 GLTSVPTG--IPSSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSQNQ-IQSLP-------DGVFDKLTKLTILYLHE 85 (177)
T ss_dssp CCSSCCTT--CCTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCS
T ss_pred CCccCCCC--CCCCCcEEEeCCCc-ccEeC-HHHhcCcccccEEECCCCc-ceEeC-------hhHccCCCccCEEECCC
Confidence 34555543 34799999999885 55542 3456789999999999875 56665 12346789999999999
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCCC-CCCCCcceeEccCccccccccchh
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGN-SSTPKLHEVQWPGEARWAWKDDLN 280 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~L~l~~~~~~~~~~~l~ 280 (323)
+ +++.++... +..+++|++|+++++ .++.+|... ..+++|++|++ ..+.+.+..+
T Consensus 86 N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l---~~N~~~~~~~ 141 (177)
T 2o6r_A 86 N-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWL---HTNPWDCSCP 141 (177)
T ss_dssp S-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC---CSSCBCCCHH
T ss_pred C-CccccCHHH-hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEe---cCCCeeccCc
Confidence 5 788877643 457899999999886 667787764 57899999999 5566665443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-06 Score=78.09 Aligned_cols=200 Identities=11% Similarity=0.107 Sum_probs=119.7
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC-----chhhhhccCCcceeeecCCCCccccCCCCCCCCCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC-----PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNL 154 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c-----p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L 154 (323)
.+++|+.+++.++ .+..++.... .+.+|+.+.+... ...+..+.+|+.+ .+. ..+..+......-++|
T Consensus 178 ~c~~L~~l~l~~n-~l~~I~~~aF---~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l-~l~--~~l~~I~~~aF~~~~L 250 (401)
T 4fdw_A 178 YCYNLKKADLSKT-KITKLPASTF---VYAGIEEVLLPVTLKEIGSQAFLKTSQLKTI-EIP--ENVSTIGQEAFRESGI 250 (401)
T ss_dssp TCTTCCEEECTTS-CCSEECTTTT---TTCCCSEEECCTTCCEECTTTTTTCTTCCCE-ECC--TTCCEECTTTTTTCCC
T ss_pred CcccCCeeecCCC-cceEechhhE---eecccCEEEeCCchheehhhHhhCCCCCCEE-ecC--CCccCccccccccCCc
Confidence 5777888887654 5666666543 4677777777543 1122223344444 222 2344444333333688
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCccc----ceeeeccCcccccccccccccCeeecccccccceecCCC
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRI----TEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGN 230 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l----~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 230 (323)
+.+.+.+ .++.+. ...+.++++|+.+.+.++... ..++ ...+..+++|+.+.+.+ +++.++...
T Consensus 251 ~~i~lp~--~i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-------~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 251 TTVKLPN--GVTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIH-------PYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp SEEEEET--TCCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEEC-------TTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred cEEEeCC--CccEEC-hhHhhCCCCCCEEEeCCccccCCcccEEC-------HHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 8888854 356553 345678889999988764321 1233 23446788999999985 688887654
Q ss_pred ccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccCcccc-----ccccchhhhceeeeccceeeeeeecCCCcc
Q 020667 231 CAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPGEARW-----AWKDDLNTTIQKVIFPAMVAGVWSDDGGLE 303 (323)
Q Consensus 231 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~~~~~-----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~e 303 (323)
+..+++|+.+.+.+ .++.++.. ...| +|+.+.+.+..-. .+. .++..+..+.++...........+|.
T Consensus 319 -F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~-~~~~~l~~l~vp~~~~~~y~~a~~W~ 392 (401)
T 4fdw_A 319 -LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY-GFPDDITVIRVPAESVEKYKNANGWR 392 (401)
T ss_dssp -TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC-CSCTTCCEEEECGGGHHHHHHSTTGG
T ss_pred -hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCccccccccc-CCCCCccEEEeCHHHHHHhhhccchh
Confidence 56788999999955 36777654 4567 9999999553211 121 23455667777765544433344454
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=76.34 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=81.8
Q ss_pred cCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccc
Q 020667 127 NRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEV 206 (323)
Q Consensus 127 ~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 206 (323)
+.++.| .+.++ .+..+|..+..+++|++|+++++. ++.+. +..+.++++|++|+++++. +..++ ...+
T Consensus 31 ~~l~~L-~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~-------~~~f 98 (193)
T 2wfh_A 31 RDVTEL-YLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLS-NQSFSNMTQLLTLILSYNR-LRCIP-------PRTF 98 (193)
T ss_dssp TTCCEE-ECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCC-------TTTT
T ss_pred CCCCEE-ECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeC-HhHccCCCCCCEEECCCCc-cCEeC-------HHHh
Confidence 356666 34443 556788788899999999999885 55553 3457889999999999876 66665 2345
Q ss_pred ccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 207 ITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 207 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
..+++|+.|+++++ .++.++... +..+++|++|++++++.
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEGA-FNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCC-CCCeeChhh-hhcCccccEEEeCCCCe
Confidence 67899999999995 788887653 45789999999988653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.7e-10 Score=92.21 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSG 229 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 229 (323)
.+++|++|++++|. ++.+ +..+..+++|+.|++++|. +..++ .+..+++|+.|+++++ .++.++.-
T Consensus 68 ~l~~L~~L~l~~n~-l~~l--~~~~~~~~~L~~L~L~~N~-l~~l~---------~~~~l~~L~~L~l~~N-~i~~~~~~ 133 (198)
T 1ds9_A 68 GMENLRILSLGRNL-IKKI--ENLDAVADTLEELWISYNQ-IASLS---------GIEKLVNLRVLYMSNN-KITNWGEI 133 (198)
T ss_dssp HHTTCCEEEEEEEE-ECSC--SSHHHHHHHCSEEEEEEEE-CCCHH---------HHHHHHHSSEEEESEE-ECCCHHHH
T ss_pred cCCCCCEEECCCCC-cccc--cchhhcCCcCCEEECcCCc-CCcCC---------ccccCCCCCEEECCCC-cCCchhHH
Confidence 34445555554442 2332 2233344455555555442 22222 1234455555555543 33333220
Q ss_pred CccccCCcccEEeecCCC
Q 020667 230 NCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~ 247 (323)
.....+++|++|++++|+
T Consensus 134 ~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 134 DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHTTTTTCSEEEECSCH
T ss_pred HHHhcCCCCCEEEecCCc
Confidence 112345555555555544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-08 Score=78.99 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCccccccccc----ccccCeeecccccccceec
Q 020667 152 QNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVIT----FRELKELKLLNLESLTSFC 227 (323)
Q Consensus 152 ~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~----~~~L~~L~l~~c~~L~~l~ 227 (323)
.+|++|++++|. +++.. ...+.++++|++|++++|..+++... ..+.. .++|++|+|++|+++++-.
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 479999999997 76654 34567899999999999998876421 11122 3589999999999998865
Q ss_pred CCCccccCCcccEEeecCCCCCcc
Q 020667 228 SGNCAFKFPSLERLVLDDCPSMKI 251 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l~~ 251 (323)
... ...+++|++|++++|+.++.
T Consensus 132 l~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHH-GGGCTTCCEEEEESCTTCCC
T ss_pred HHH-HhcCCCCCEEECCCCCCCCc
Confidence 543 45689999999999998864
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.7e-07 Score=72.58 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceec
Q 020667 148 STSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFC 227 (323)
Q Consensus 148 ~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 227 (323)
+..+++|++|+++++. ++.++ +..+..+++|+.|+++++. +..++ ...+..+++|+.|+++++ .++.++
T Consensus 48 ~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-------~~~~~~l~~L~~L~l~~N-~l~~~~ 116 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTILYLHENK-LQSLP-------NGVFDKLTQLKELALDTN-QLKSVP 116 (177)
T ss_dssp TTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred hcCcccccEEECCCCc-ceEeC-hhHccCCCccCEEECCCCC-ccccC-------HHHhhCCcccCEEECcCC-cceEeC
Confidence 3566777777777764 44442 2335677778888877764 44444 122346778888888875 677776
Q ss_pred CCCccccCCcccEEeecCCCCC
Q 020667 228 SGNCAFKFPSLERLVLDDCPSM 249 (323)
Q Consensus 228 ~~~~~~~l~~L~~L~l~~c~~l 249 (323)
... +..+++|++|++++++..
T Consensus 117 ~~~-~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 117 DGI-FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTT-TTTCTTCCEEECCSSCBC
T ss_pred HHH-hcCCcccCEEEecCCCee
Confidence 543 345788888888877543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-06 Score=76.25 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=80.8
Q ss_pred CCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccC-eeecccccccceecCC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELK-ELKLLNLESLTSFCSG 229 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~ 229 (323)
+++|+.+++.++. ++.++ ...+.++++|+.+++.++ +..++ ...+..+++|+ .+.+.+ +++.++..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~n--i~~I~-------~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPHN--LKTIG-------QRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCTT--CCEEC-------TTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCCC-cceec-HhhhhCCCCCCEEECCcc--cceeh-------HHHhhCChhccEEEEEcc--cceEEchh
Confidence 6899999999764 67764 346788999999999875 77776 23456788999 999988 78888775
Q ss_pred CccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 230 NCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 230 ~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
. +..+++|+.|++.. ..++.++.. ...|++|+.++.
T Consensus 292 a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 A-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred h-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 4 67899999999966 578888774 568999999874
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=72.54 Aligned_cols=210 Identities=10% Similarity=0.093 Sum_probs=131.0
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
.+|+.+.+.+ .++.+ +...+..+++|+.+++.++ .++ .++... ..+.+|+.+.+.+ .++.+....
T Consensus 157 ~~L~~i~lp~--~l~~I-~~~aF~~c~~L~~l~l~~n-~l~--~I~~~a-------F~~~~L~~l~lp~--~l~~I~~~a 221 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQL-KEDIFYYCYNLKKADLSKT-KIT--KLPAST-------FVYAGIEEVLLPV--TLKEIGSQA 221 (401)
T ss_dssp CCCCEEECCT--TCCEE-CSSTTTTCTTCCEEECTTS-CCS--EECTTT-------TTTCCCSEEECCT--TCCEECTTT
T ss_pred CCceEEEeCC--CccEe-hHHHhhCcccCCeeecCCC-cce--Eechhh-------EeecccCEEEeCC--chheehhhH
Confidence 4789999875 67775 5455788999999998754 344 222221 1346777777753 355555443
Q ss_pred ccccCCCCccEEEEcCCc-----hhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCc----ceecchh
Q 020667 103 LGILEFPSLKELWISGCP-----KFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGL----KIVLTFS 172 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp-----~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l----~~l~~~~ 172 (323)
+..+++|+.+.+.+.- ..+.. .+|+.+ .+ -..+..++ ....++++|+.+.+.++..- ..++ ..
T Consensus 222 --F~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i-~l--p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~ 294 (401)
T 4fdw_A 222 --FLKTSQLKTIEIPENVSTIGQEAFRE-SGITTV-KL--PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PY 294 (401)
T ss_dssp --TTTCTTCCCEECCTTCCEECTTTTTT-CCCSEE-EE--ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TT
T ss_pred --hhCCCCCCEEecCCCccCcccccccc-CCccEE-Ee--CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HH
Confidence 3567777777776531 11111 233333 12 12233332 23557889999999875321 2332 34
Q ss_pred HHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCccc
Q 020667 173 IAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIF 252 (323)
Q Consensus 173 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l 252 (323)
.+.++++|+.+.+.+ .+..+. ...+..+++|+.+.|.+ +++.+.... +..+ +|+.+.+.++ ....+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~-------~~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l 360 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILG-------QGLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQV 360 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEEC-------TTTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBC
T ss_pred HhhCCccCCeEEeCC--ceEEEh-------hhhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCccc
Confidence 578899999999974 466665 23445678999999965 688887655 5567 9999999875 44445
Q ss_pred CCC-CCCC-CCcceeEcc
Q 020667 253 SEG-NSST-PKLHEVQWP 268 (323)
Q Consensus 253 p~~-~~~~-~~L~~L~l~ 268 (323)
+.+ ...+ .+++.+++.
T Consensus 361 ~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 361 FEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CCSSCCCSCTTCCEEEEC
T ss_pred ccccccCCCCCccEEEeC
Confidence 543 3345 478999993
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.2e-08 Score=76.40 Aligned_cols=90 Identities=11% Similarity=0.166 Sum_probs=64.4
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccc----cCCcCEEeccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVM----FPQLQYLKMFNLENFTS 97 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~l~~ 97 (323)
-.+|++|++++|. +++..-.. +..+++|+.|+|++|..+++-.+. .+.. .++|++|++++|+++++
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~--------~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLE--------RLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHH--------HHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHH--------HHHhcccccCCCCEEEcCCCCcCCH
Confidence 3469999999986 76543333 578999999999999988721111 1112 35799999999998876
Q ss_pred ccccCccccCCCCccEEEEcCCchhh
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFM 123 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~ 123 (323)
-.... ...+++|++|++++||...
T Consensus 130 ~Gl~~--L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIA--LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHH--GGGCTTCCEEEEESCTTCC
T ss_pred HHHHH--HhcCCCCCEEECCCCCCCC
Confidence 44332 2468999999999997543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=68.28 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.++|++|++++ +.++++.|.. +..+++|++|+++++. ++ .++.. .+..+++|++|+++++ .+..++..
T Consensus 29 ~~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~--~l~~~------~f~~l~~L~~L~L~~N-~l~~~~~~ 96 (170)
T 3g39_A 29 PTTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQ-LT--VLPAG------VFDKLTQLTQLSLNDN-QLKSIPRG 96 (170)
T ss_dssp CTTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSC-CC--CCCTT------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCC-cC--ccChh------hccCCCCCCEEECCCC-ccCEeCHH
Confidence 47888999988 7888864544 6788999999998774 44 22211 1237888999999887 57777664
Q ss_pred CccccCCCCccEEEEcCCc
Q 020667 102 NLGILEFPSLKELWISGCP 120 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp 120 (323)
. +..+++|++|+++++|
T Consensus 97 ~--~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 97 A--FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp T--TTTCTTCCEEECCSSC
T ss_pred H--hcCCCCCCEEEeCCCC
Confidence 3 2478889999988874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=69.14 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
.++|++|++++ +.++++.|.. ++.+++|++|+++++ .++ .++.. .+..+++|++|+++++ .+..++..
T Consensus 32 ~~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~--~i~~~------~~~~l~~L~~L~L~~N-~l~~l~~~ 99 (174)
T 2r9u_A 32 PTDKQRLWLNN-NQITKLEPGV-FDHLVNLQQLYFNSN-KLT--AIPTG------VFDKLTQLTQLDLNDN-HLKSIPRG 99 (174)
T ss_dssp CTTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSS-CCC--CCCTT------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEeCC-CCccccCHHH-hcCCcCCCEEECCCC-CCC--ccChh------HhCCcchhhEEECCCC-ccceeCHH
Confidence 37888899988 6788764543 678888999998876 344 22211 1236888999998886 56666664
Q ss_pred CccccCCCCccEEEEcCCc
Q 020667 102 NLGILEFPSLKELWISGCP 120 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp 120 (323)
. +..+++|++|+++++|
T Consensus 100 ~--~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 A--FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp T--TTTCTTCSEEECCSSC
T ss_pred H--hccccCCCEEEeCCCC
Confidence 3 2468888888888874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=67.66 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=25.5
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
.+++|+.|++++. +++.++... +..+++|++|++++ +.++.+|.. +..+++|+.|++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGV-FDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcCCCEEECCCC-CCCccChhH-hCCcchhhEEECCC-CccceeCHHHhccccCCCEEEe
Confidence 3444444444442 444443321 23345555555544 234444443 344555555555
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-06 Score=74.87 Aligned_cols=95 Identities=23% Similarity=0.214 Sum_probs=69.9
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+..+|. +..+++|++|+|++++.++.++ +..+.++++|+.|+++++. +..++ ...+..+++|+.|+|++
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-------~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVA-------PDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEEC-------TTGGGSCSCCCEEECCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeC-------HHHhcCCcCCCEEeCCC
Confidence 5777887 8888899999998755677763 3457788999999998874 66665 23456788999999988
Q ss_pred ccccceecCCCccccCCcccEEeecCCC
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCP 247 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 247 (323)
.+|+.++... +..+ .|++|++.+++
T Consensus 90 -N~l~~~~~~~-~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 -NALESLSWKT-VQGL-SLQELVLSGNP 114 (347)
T ss_dssp -SCCSCCCSTT-TCSC-CCCEEECCSSC
T ss_pred -CccceeCHHH-cccC-CceEEEeeCCC
Confidence 4788887654 2233 38889887754
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=74.74 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=19.6
Q ss_pred ccCCcCEEecccccccccccccCccccCCCCccEEEEcCC
Q 020667 80 MFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 80 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 119 (323)
.+|+|+.|.++++..+ .++. . ..++|++|.+..|
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~--~---~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK--K---PRPNLKSLEIISG 203 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS--C---BCTTCSEEEEECS
T ss_pred cCCCCcEEEEeCCCCc-eecc--c---cCCCCcEEEEecC
Confidence 5677777777665222 1211 1 3667777777665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.17 E-value=6e-06 Score=65.76 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=27.1
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
.+++|++|++++. +++.++... +..+++|++|+++++ .++.+|.. +..+++|++|++
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLPAGV-FDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcccCCEEECCCC-CcCccChhh-ccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEe
Confidence 4445555555543 444444322 234555555555543 34444442 344555555555
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-06 Score=74.64 Aligned_cols=91 Identities=24% Similarity=0.262 Sum_probs=69.4
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|. +. .+++|++|+|++++.++++.+. .++.+++|+.|+|+++ .++. ++. ..+..+++|++|+|+++
T Consensus 24 ip~-l~-~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~--~~~------~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 24 LHH-LP-GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRF--VAP------DAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp TTT-SC-SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCE--ECT------TGGGSCSCCCEEECCSS-
T ss_pred cCC-CC-CCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccce--eCH------HHhcCCcCCCEEeCCCC-
Confidence 466 77 8999999999966889987444 4789999999999987 4652 222 12237999999999987
Q ss_pred ccccccccCccccCCCCccEEEEcCCc
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~cp 120 (323)
.+..++.... ...+|+.|++.+++
T Consensus 91 ~l~~~~~~~~---~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTV---QGLSLQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTT---CSCCCCEEECCSSC
T ss_pred ccceeCHHHc---ccCCceEEEeeCCC
Confidence 6788876643 33349999999874
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00035 Score=63.23 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=27.4
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEe
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIV 57 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls 57 (323)
+. .+.+|+.+.|.+ +++.+ +...+.++++|+.+++.
T Consensus 67 F~-~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 67 FQ-GCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIP 102 (394)
T ss_dssp TT-TCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCC
T ss_pred hh-CCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeC
Confidence 44 788899999874 57775 55557888999999875
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-06 Score=76.15 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=85.4
Q ss_pred CCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHH--hccccccEEE
Q 020667 107 EFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIA--KTLVRLEYME 184 (323)
Q Consensus 107 ~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l--~~l~~L~~L~ 184 (323)
.+|+|+.|.+++|.. + .+++ + ..++|++|+|..|. +..-. ...+ ..+|+|++|+
T Consensus 170 ~~P~L~~L~L~g~~~----------l----------~l~~-~-~~~~L~~L~L~~~~-l~~~~-l~~l~~~~lp~L~~L~ 225 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN----------L----------SIGK-K-PRPNLKSLEIISGG-LPDSV-VEDILGSDLPNLEKLV 225 (362)
T ss_dssp TCTTCCEEEEECCBT----------C----------BCCS-C-BCTTCSEEEEECSB-CCHHH-HHHHHHSBCTTCCEEE
T ss_pred cCCCCcEEEEeCCCC----------c----------eecc-c-cCCCCcEEEEecCC-CChHH-HHHHHHccCCCCcEEE
Confidence 678999999887611 0 1222 2 36899999999775 33221 2223 3689999999
Q ss_pred EccCcc--cceeeeccCccc-ccccccccccCeeecccccccceecCCC-ccccCCcccEEeecCCCCCcc-----cCCC
Q 020667 185 IESCDR--ITEIVLVDDVAA-KDEVITFRELKELKLLNLESLTSFCSGN-CAFKFPSLERLVLDDCPSMKI-----FSEG 255 (323)
Q Consensus 185 l~~c~~--l~~i~~~~~~~~-~~~~~~~~~L~~L~l~~c~~L~~l~~~~-~~~~l~~L~~L~l~~c~~l~~-----lp~~ 255 (323)
++.+.. ...... .+.. ......+|+|+.|++.+|.--....... ....+|.|++|+++.| .++. ++.+
T Consensus 226 L~~~~~~~~~~~~~--~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 226 LYVGVEDYGFDGDM--NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH 302 (362)
T ss_dssp EECBCGGGTCCSCG--GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT
T ss_pred EeccccccccchhH--HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh
Confidence 864211 111000 0000 0111358999999999874321111000 0124789999999764 5653 6666
Q ss_pred CCCCCCcceeEccCccccccccchhhhce
Q 020667 256 NSSTPKLHEVQWPGEARWAWKDDLNTTIQ 284 (323)
Q Consensus 256 ~~~~~~L~~L~l~~~~~~~~~~~l~~~l~ 284 (323)
+..+++|++|++ ..+.+.+..-..+.
T Consensus 303 L~~l~~L~~L~L---~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 303 VDKIKHLKFINM---KYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHTTCSEEEC---CSBBCCHHHHHHHH
T ss_pred cccCCcceEEEC---CCCcCCHHHHHHHH
Confidence 567899999999 44445443333333
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=66.57 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=63.5
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecC
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCS 228 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 228 (323)
.....++.+...... ++ ...+..+.+|+.+.+.+ .+..+. ...+..+.+|+.+.|.+ +++.++.
T Consensus 273 ~~~~~l~~~~~~~~~----i~-~~~F~~~~~L~~i~l~~--~i~~I~-------~~aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVI----VP-EKTFYGCSSLTEVKLLD--SVKFIG-------EEAFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp TTCTTCCEEEECSSE----EC-TTTTTTCTTCCEEEECT--TCCEEC-------TTTTTTCTTCCEECCCT--TCCEECT
T ss_pred ccccccceeccCcee----ec-ccccccccccccccccc--ccceec-------hhhhcCCCCCCEEEeCC--cccEEhH
Confidence 345566666554321 21 22456677888888764 355554 12335677888888864 5777766
Q ss_pred CCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 229 GNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 229 ~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
.. +..+++|+.+.+... ++.++.. ...|++|+++.+
T Consensus 337 ~a-F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 337 RS-FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TT-TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred Hh-ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence 54 566788888888542 6666654 457889999888
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-06 Score=76.82 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=87.9
Q ss_pred CCcccEEeeecccccceeccchhHh-----cCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVS-----SFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~-----~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
+++|++|++++| .++...... +. ..++|+.|++++|. +.. .... .-...+++|++|++++| .++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~-l~~~L~~~~~~L~~L~Ls~n~-l~~----~~~~---~l~~~L~~L~~L~Ls~n-~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTV-VAAVLGSGRHALDEVNLASCQ-LDP----AGLR---TLLPVFLRARKLGLQLN-SLG 139 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHH-HHHHHSSCSSCEEEEECTTCC-CCH----HHHH---HTHHHHHTEEEEECCSS-CCC
T ss_pred HhhCCEEEecCC-CCCHHHHHH-HHHHHhhCCCCceEEEecCCC-CCH----HHHH---HHHHHHHhccHhhcCCC-CCC
Confidence 467788888874 454321111 22 23678888888774 220 0000 00114567788888877 343
Q ss_pred cccccCc--cc-cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc---
Q 020667 97 SFCTSNL--GI-LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT--- 170 (323)
Q Consensus 97 ~~~~~~~--~~-~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~--- 170 (323)
....... .. ...++|++|++++|.-.-.. ...++..+...++|++|++++|. +++...
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~---------------~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L 203 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAG---------------VAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL 203 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH---------------HHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHH---------------HHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH
Confidence 2211110 00 13567888888777311000 00111123356678888888875 443211
Q ss_pred hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccce
Q 020667 171 FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTS 225 (323)
Q Consensus 171 ~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 225 (323)
...+...++|+.|++++|. +++.... .....+...++|++|+++++ .++.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~-i~~~g~~---~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNG-AGDTAAL---ALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHHGGGCSCCCEEECCSSC-CCHHHHH---HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HHHHhcCCCcCeEECCCCC-CCHHHHH---HHHHHHHhCCCCCEEeccCC-CCCH
Confidence 2234566788888888875 3322100 00011234578888888886 4544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=7.6e-06 Score=73.78 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=55.7
Q ss_pred CCCCCCEEEeecCcCcceecc---hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 150 SFQNLTNLVVSCCKGLKIVLT---FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
..++|++|++++|. +++... ...+...++|++|++++|. +++.... .-...+...++|++|++++| .++..
T Consensus 153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~---~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 153 DQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE---LLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp TTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH---HHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred cCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH---HHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 34689999999885 444211 2234667889999999876 4332100 00112245678999999886 55543
Q ss_pred cCCC---ccccCCcccEEeecCCC
Q 020667 227 CSGN---CAFKFPSLERLVLDDCP 247 (323)
Q Consensus 227 ~~~~---~~~~l~~L~~L~l~~c~ 247 (323)
.... .....++|++|++++|+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHhCCCCCEEeccCCC
Confidence 2211 11246789999998875
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.028 Score=50.16 Aligned_cols=34 Identities=6% Similarity=0.224 Sum_probs=21.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEe
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIV 57 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls 57 (323)
...+|+.+.|.+ +++.+ +...+.++.+|+.++|.
T Consensus 44 ~~~~i~~v~ip~--~vt~I-g~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSI-GEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGGCSEEEECT--TEEEE-CTTTTTTCTTCCEEEEC
T ss_pred cccCCEEEEeCC--CccCh-HHHHhhCCCCCCEEEeC
Confidence 345677777763 56664 44446677777777764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0085 Score=53.98 Aligned_cols=229 Identities=14% Similarity=0.139 Sum_probs=115.2
Q ss_pred cccccCCcccEEeeecc--cccceeccchhHhcCCCccEEEE------------ecCCCCceEEeeccccccC-CCcccc
Q 020667 17 VMSCGIQNLMHLTLRSC--MNLRYLFSSSIVSSFVRLQRIEI------------VECPVLKELIVMDNQEERK-NNNVMF 81 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c--~~l~~~~p~~~~~~l~~L~~L~l------------s~c~~l~~l~~~~~~~~~~-~~~~~l 81 (323)
.+. ++.+|+.+.+.+. ..++.+ ....+..+.+|+.+.+ .+|..++.+.++.....+. .....+
T Consensus 82 AF~-~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFY-NCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYC 159 (394)
T ss_dssp TTT-TCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTC
T ss_pred Hhh-CCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCccceehhhhhhhhcccccccccceeeeecccceecc
Confidence 345 7889999988652 235554 4444566666666543 3566666655554332111 122245
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCch-----hhhhccCCcceee----------------------
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPK-----FMERYNRTTNILT---------------------- 134 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~-----~~~~l~~L~~L~~---------------------- 134 (323)
.+|+.+.+.+ .+..+..... ...+|+.+.+...-. ....+..+.....
T Consensus 160 ~~L~~i~~~~--~~~~I~~~aF---~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 4gt6_A 160 YSLHTVTLPD--SVTAIEERAF---TGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA 234 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTT---TTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred cccccccccc--eeeEeccccc---cccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccc
Confidence 6677776643 3444444322 345677776643311 1111111111100
Q ss_pred ---ecCCCCcc--ccCC--------CCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcc
Q 020667 135 ---ERGCDHLV--DLVP--------SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVA 201 (323)
Q Consensus 135 ---i~~~~~l~--~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~ 201 (323)
...+.... .+|. ...++.+|+.+.+.+. +..+. ...+.++++|+.+.+. ..+..++
T Consensus 235 ~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~--~~~I~-~~aF~~c~~L~~i~l~--~~i~~I~------ 303 (394)
T 4gt6_A 235 LIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS--VVSIG-TGAFMNCPALQDIEFS--SRITELP------ 303 (394)
T ss_dssp EEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT--CCEEC-TTTTTTCTTCCEEECC--TTCCEEC------
T ss_pred ccccccccccceEEcCCcceEcccceeeecccccEEecccc--cceec-CcccccccccccccCC--CcccccC------
Confidence 00000000 1111 1223455555555332 22222 2234556667766664 2344444
Q ss_pred cccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccC
Q 020667 202 AKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPG 269 (323)
Q Consensus 202 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~ 269 (323)
...+..+.+|+.+.|.+ +++.+.... +..+.+|+.+.|.+ .++.+... ...|++|+.+++.+
T Consensus 304 -~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 304 -ESVFAGCISLKSIDIPE--GITQILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred -ceeecCCCCcCEEEeCC--cccEehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 12334567788888764 577776543 55678888888853 35556543 35788888888844
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0088 Score=53.86 Aligned_cols=222 Identities=12% Similarity=0.157 Sum_probs=113.6
Q ss_pred cCC-cccEEeeecccccceeccchhHhcCCCccEEEEec----------------CCCCceEEeeccccccC-CCccccC
Q 020667 21 GIQ-NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVE----------------CPVLKELIVMDNQEERK-NNNVMFP 82 (323)
Q Consensus 21 ~l~-~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~----------------c~~l~~l~~~~~~~~~~-~~~~~l~ 82 (323)
++. .|+.+.|.+ .++.+ ....+.++.+|+.+.+.+ |..++.+.++.....+. .....+.
T Consensus 61 ~~~~~L~sI~iP~--svt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPD--TVTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECT--TCCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCT
T ss_pred CCCCcCEEEEECC--CeeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhc
Confidence 453 599999985 58876 555588999999998853 34444333332221111 1223456
Q ss_pred CcCEEecccccccccccccCccccCCCCccEEEEcCCchhhh----hccCCcceeeecCCCCccccC-CCCCCCCCCCEE
Q 020667 83 QLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCPKFME----RYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNL 157 (323)
Q Consensus 83 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp~~~~----~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L 157 (323)
+|+.+.+.. .+..+.... +..+.+|+.+.+.+.-..++ ....++.+. +.. .+..+. .......+++..
T Consensus 138 ~L~~i~lp~--~~~~I~~~~--F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~-ip~--~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 138 ELDTVTIPE--GVTSVADGM--FSYCYSLHTVTLPDSVTAIEERAFTGTALTQIH-IPA--KVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCCEEECCT--TCCEECTTT--TTTCTTCCEEECCTTCCEECTTTTTTCCCSEEE-ECT--TCCEECTTTTTTCTTCCEE
T ss_pred ccccccccc--eeeeecccc--eecccccccccccceeeEeccccccccceeEEE-ECC--cccccccchhhhcccccee
Confidence 677777643 234444333 35788899998865421111 112333331 100 000000 001122222222
Q ss_pred Eeec--------------------------Cc---------CcceecchhHHhccccccEEEEccCcccceeeeccCccc
Q 020667 158 VVSC--------------------------CK---------GLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAA 202 (323)
Q Consensus 158 ~l~~--------------------------c~---------~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 202 (323)
.... +. .++.+. ...+.++..|+.+.+.+. +..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~-~~aF~~c~~L~~i~lp~~--~~~I~------- 280 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIE-THAFDSCAYLASVKMPDS--VVSIG------- 280 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEEC-TTTTTTCSSCCEEECCTT--CCEEC-------
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCCcceEcc-cceeeecccccEEecccc--cceec-------
Confidence 2111 00 111111 112334455555554321 22222
Q ss_pred ccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEc
Q 020667 203 KDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQW 267 (323)
Q Consensus 203 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l 267 (323)
...+..+++|+.+.+.. .++.++... +..+++|+.+.|.+ .++.+... ...|.+|+++.+
T Consensus 281 ~~aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEE
T ss_pred CcccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEE
Confidence 12234567788887754 677776654 56788999999864 46667654 457899999998
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0054 Score=52.25 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=6.9
Q ss_pred ccCCcCEEecccc
Q 020667 80 MFPQLQYLKMFNL 92 (323)
Q Consensus 80 ~l~~L~~L~l~~~ 92 (323)
.+++|+.|+|+++
T Consensus 194 ~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 194 KAPNLKILNLSGN 206 (267)
T ss_dssp HSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 4555555555544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0014 Score=52.55 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=50.4
Q ss_pred cCCcccEEeeecccccceeccc---hhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSS---SIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~---~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
..++|++|+|++|..+....-. ..+...++|++|+|++|. +.. .........+...++|++|+++++. ++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~----~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SND----PVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCH----HHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CCh----HHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 5788889999885355431111 113456888888888874 220 0001111222245678888888773 332
Q ss_pred -----ccccCccccCCCCccEEEE--cCC
Q 020667 98 -----FCTSNLGILEFPSLKELWI--SGC 119 (323)
Q Consensus 98 -----~~~~~~~~~~l~~L~~L~l--~~c 119 (323)
+... ....++|++|++ ++|
T Consensus 108 ~g~~~l~~~---L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 108 SGILALVEA---LQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHHHG---GGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHH---HHhCCCceEEEecCCCC
Confidence 1222 225667888888 555
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.011 Score=47.15 Aligned_cols=44 Identities=2% Similarity=-0.056 Sum_probs=21.9
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
+...++|++|++++|..+.. .........+...++|++|++++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~----~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HhcCCCCCEEEecCCCCCCH----HHHHHHHHHHHhCCCcCEEECcCC
Confidence 44567777777776633431 000111111224456677777665
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0054 Score=52.23 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=40.8
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
.++++|+.|+++++. +..+..- ...+..+++|+.|+|++ .+++.+..-.....+ +|++|++.+++.-+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l-----~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDM-----SSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGG-----TTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCC-CCCCccc-----hhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence 346666666666654 3332200 01223566667776666 345544211111112 677777776665444442
Q ss_pred -------CCCCCCCcceeE
Q 020667 255 -------GNSSTPKLHEVQ 266 (323)
Q Consensus 255 -------~~~~~~~L~~L~ 266 (323)
.+..+|+|+.|+
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 123456666653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.20 E-value=1.1 Score=39.66 Aligned_cols=200 Identities=8% Similarity=0.061 Sum_probs=92.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccc-----cccCCCccccCCcCEEeccccccccc
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQ-----EERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
.+|+.+.+.. .++.+ ....+..+.+++...+....... ...... ............+....+... ...
T Consensus 135 ~~l~~~~~~~--~v~~i-~~~~f~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 207 (379)
T 4h09_A 135 SSVKRIVIPK--SVTTI-KDGIGYKAENLEKIEVSSNNKNY--VAENYVLYNKNKTILESYPAAKTGTEFTIPST--VKT 207 (379)
T ss_dssp CCCCEEEECT--TCCEE-CSCTTTTCTTCCEEEECTTCSSE--EEETTEEEETTSSEEEECCTTCCCSEEECCTT--CCE
T ss_pred ceeeeeeccc--eeecc-ccchhccccccccccccccccee--ecccceecccccceeccccccccccccccccc--eeE
Confidence 3566666653 45554 33346788889988887554332 111000 000001112334444444321 222
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcc
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTL 177 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l 177 (323)
+.... ...+.+|+.+.+... +..+ .. ....+..+|+.+.+... ++.+. ...+.++
T Consensus 208 i~~~~--f~~~~~l~~i~~~~~---------~~~i---~~--------~~f~~~~~L~~i~lp~~--v~~I~-~~aF~~~ 262 (379)
T 4h09_A 208 VTAYG--FSYGKNLKKITITSG---------VTTL---GD--------GAFYGMKALDEIAIPKN--VTSIG-SFLLQNC 262 (379)
T ss_dssp ECTTT--TTTCSSCSEEECCTT---------CCEE---CT--------TTTTTCSSCCEEEECTT--CCEEC-TTTTTTC
T ss_pred Eeecc--cccccccceeeeccc---------eeEE---cc--------ccccCCccceEEEcCCC--ccEeC-cccccee
Confidence 22111 235667777766432 1111 00 11233455555555432 34332 1234455
Q ss_pred ccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-C
Q 020667 178 VRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-N 256 (323)
Q Consensus 178 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~ 256 (323)
.+|+.+.+.. .+..+. ...+..+++|+.+.+.+ ..++.++... +..+++|+.+.+.+ .++.+... .
T Consensus 263 ~~l~~i~l~~--~i~~i~-------~~aF~~c~~L~~i~l~~-~~i~~I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF 329 (379)
T 4h09_A 263 TALKTLNFYA--KVKTVP-------YLLCSGCSNLTKVVMDN-SAIETLEPRV-FMDCVKLSSVTLPT--ALKTIQVYAF 329 (379)
T ss_dssp TTCCEEEECC--CCSEEC-------TTTTTTCTTCCEEEECC-TTCCEECTTT-TTTCTTCCEEECCT--TCCEECTTTT
T ss_pred ehhccccccc--cceecc-------ccccccccccccccccc-cccceehhhh-hcCCCCCCEEEcCc--cccEEHHHHh
Confidence 5666666542 233333 12223456666666654 2455555443 44566666666643 35555443 3
Q ss_pred CCCCCcceeEc
Q 020667 257 SSTPKLHEVQW 267 (323)
Q Consensus 257 ~~~~~L~~L~l 267 (323)
..|++|+++.+
T Consensus 330 ~~C~~L~~i~i 340 (379)
T 4h09_A 330 KNCKALSTISY 340 (379)
T ss_dssp TTCTTCCCCCC
T ss_pred hCCCCCCEEEE
Confidence 45666666666
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.1 Score=38.98 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=19.3
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecC
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVEC 59 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c 59 (323)
+|++|+|++ +.++.+ |..++..+++|+.|+|+++
T Consensus 32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCC
Confidence 566666665 555553 4444555666666666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.73 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.72 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.62 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.53 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.49 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.46 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.42 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.35 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.31 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.31 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.28 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.25 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.23 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.21 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.15 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.02 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.95 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.85 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.79 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.73 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.68 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.66 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.54 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.53 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.48 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.36 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.01 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.72 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.53 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.34 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.94 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.24 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.86 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.95 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 90.32 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 88.52 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.73 E-value=8.5e-18 Score=146.86 Aligned_cols=227 Identities=17% Similarity=0.091 Sum_probs=142.3
Q ss_pred cccEEeeeccccccee--ccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 24 NLMHLTLRSCMNLRYL--FSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~--~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
++++|++++ +++.+. +|.+ ++++++|++|++++|..+. |.+|+.+..+++|++|+++++. +...+..
T Consensus 51 ~v~~L~L~~-~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~--------g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~ 119 (313)
T d1ogqa_ 51 RVNNLDLSG-LNLPKPYPIPSS-LANLPYLNFLYIGGINNLV--------GPIPPAIAKLTQLHYLYITHTN-VSGAIPD 119 (313)
T ss_dssp CEEEEEEEC-CCCSSCEECCGG-GGGCTTCSEEEEEEETTEE--------SCCCGGGGGCTTCSEEEEEEEC-CEEECCG
T ss_pred EEEEEECCC-CCCCCCCCCChH-HhcCccccccccccccccc--------cccccccccccccchhhhcccc-ccccccc
Confidence 577788887 455542 3555 6788888888888765553 3345555678888888888763 4433332
Q ss_pred CccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCC-CEEEeecCcCcceecchhHH
Q 020667 102 NLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNL-TNLVVSCCKGLKIVLTFSIA 174 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L-~~L~l~~c~~l~~l~~~~~l 174 (323)
. ...+++|+.+++..+ |..+..++.++.+ .+.++...+.+|..+..+.++ +.+.++++. +.... +..+
T Consensus 120 ~--~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l-~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l~~~~-~~~~ 194 (313)
T d1ogqa_ 120 F--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKI-PPTF 194 (313)
T ss_dssp G--GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE-ECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEEC-CGGG
T ss_pred c--ccchhhhcccccccccccccCchhhccCccccee-ecccccccccccccccccccccccccccccc-ccccc-cccc
Confidence 2 246777888887776 4555556666666 466666666677767677665 666666554 44332 3334
Q ss_pred hccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCC
Q 020667 175 KTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSE 254 (323)
Q Consensus 175 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 254 (323)
.++. +..+++..+.....++ ..+..+++++.+++.++ .+...+.. ...+++|++|++++|...+.+|.
T Consensus 195 ~~l~-~~~l~l~~~~~~~~~~--------~~~~~~~~l~~l~~~~~-~l~~~~~~--~~~~~~L~~L~Ls~N~l~g~iP~ 262 (313)
T d1ogqa_ 195 ANLN-LAFVDLSRNMLEGDAS--------VLFGSDKNTQKIHLAKN-SLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCG--------GGCCTTSCCSEEECCSS-EECCBGGG--CCCCTTCCEEECCSSCCEECCCG
T ss_pred cccc-cccccccccccccccc--------ccccccccccccccccc-cccccccc--cccccccccccCccCeecccCCh
Confidence 4443 3456666665444444 33356777888887775 34333222 24567888888877665557888
Q ss_pred CCCCCCCcceeEccCccccccccchhh
Q 020667 255 GNSSTPKLHEVQWPGEARWAWKDDLNT 281 (323)
Q Consensus 255 ~~~~~~~L~~L~l~~~~~~~~~~~l~~ 281 (323)
++..+++|++|++ +.+.+.|.+|.
T Consensus 263 ~l~~L~~L~~L~L---s~N~l~g~iP~ 286 (313)
T d1ogqa_ 263 GLTQLKFLHSLNV---SFNNLCGEIPQ 286 (313)
T ss_dssp GGGGCTTCCEEEC---CSSEEEEECCC
T ss_pred HHhCCCCCCEEEC---cCCcccccCCC
Confidence 7777888888888 66666666664
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.72 E-value=3.2e-17 Score=143.19 Aligned_cols=226 Identities=13% Similarity=0.072 Sum_probs=163.8
Q ss_pred ccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccc
Q 020667 14 QVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 14 ~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
.|.+++ ++++|++|+|++|+++.+.+|.+ ++++++|++|+++++.... ..+.. ...+++|+.++++++.
T Consensus 68 lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~--~~~~~-------~~~~~~L~~l~l~~N~ 136 (313)
T d1ogqa_ 68 IPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSG--AIPDF-------LSQIKTLVTLDFSYNA 136 (313)
T ss_dssp CCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEE--ECCGG-------GGGCTTCCEEECCSSE
T ss_pred CChHHh-cCccccccccccccccccccccc-cccccccchhhhccccccc--ccccc-------ccchhhhccccccccc
Confidence 477899 99999999999988998777877 7899999999999985432 22222 2378899999999987
Q ss_pred ccccccccCccccCCCCccEEEEcCC------chhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcce
Q 020667 94 NFTSFCTSNLGILEFPSLKELWISGC------PKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKI 167 (323)
Q Consensus 94 ~l~~~~~~~~~~~~l~~L~~L~l~~c------p~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 167 (323)
....+|... ..+++|+.++++++ |..+..+..+.....+..+...+..|..+..+ .+..+++..+.....
T Consensus 137 ~~~~~p~~l---~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~ 212 (313)
T d1ogqa_ 137 LSGTLPPSI---SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212 (313)
T ss_dssp EESCCCGGG---GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEEC
T ss_pred ccccCchhh---ccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 777777664 48999999999988 34444444443222333333333344444444 455788887765554
Q ss_pred ecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccc-eecCCCccccCCcccEEeecCC
Q 020667 168 VLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLT-SFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 168 l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c 246 (323)
+ +.....+++|+.+++.++.....++ .+..+++|+.|+++++ +++ .+|.. +..+++|++|+++++
T Consensus 213 ~--~~~~~~~~~l~~l~~~~~~l~~~~~---------~~~~~~~L~~L~Ls~N-~l~g~iP~~--l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 213 A--SVLFGSDKNTQKIHLAKNSLAFDLG---------KVGLSKNLNGLDLRNN-RIYGTLPQG--LTQLKFLHSLNVSFN 278 (313)
T ss_dssp C--GGGCCTTSCCSEEECCSSEECCBGG---------GCCCCTTCCEEECCSS-CCEECCCGG--GGGCTTCCEEECCSS
T ss_pred c--ccccccccccccccccccccccccc---------ccccccccccccCccC-eecccCChH--HhCCCCCCEEECcCC
Confidence 4 5567788999999999886544433 3467899999999996 676 56653 478999999999997
Q ss_pred CCCcccCCCCCCCCCcceeEccC
Q 020667 247 PSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 247 ~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
...+.+|.. ..+++|+.+++.|
T Consensus 279 ~l~g~iP~~-~~L~~L~~l~l~~ 300 (313)
T d1ogqa_ 279 NLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCS
T ss_pred cccccCCCc-ccCCCCCHHHhCC
Confidence 666689974 4778888888833
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.62 E-value=2e-14 Score=124.58 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=58.6
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|+|++ ++++.+ |...+.++++|++|+++++.... ..+. .+..+++|+.|+++++ .++.++..
T Consensus 31 ~~l~~L~Ls~-N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~--i~~~-------~f~~l~~L~~L~l~~n-~l~~l~~~- 97 (305)
T d1xkua_ 31 PDTALLDLQN-NKITEI-KDGDFKNLKNLHTLILINNKISK--ISPG-------AFAPLVKLERLYLSKN-QLKELPEK- 97 (305)
T ss_dssp TTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCSSCCCC--BCTT-------TTTTCTTCCEEECCSS-CCSBCCSS-
T ss_pred CCCCEEECcC-CcCCCc-ChhHhhccccccccccccccccc--cchh-------hhhCCCccCEecccCC-ccCcCccc-
Confidence 7899999998 678886 54447899999999999887543 2222 2337889999999987 57766654
Q ss_pred ccccCCCCccEEEEcCC
Q 020667 103 LGILEFPSLKELWISGC 119 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c 119 (323)
.++.++.|.+.++
T Consensus 98 ----~~~~l~~L~~~~n 110 (305)
T d1xkua_ 98 ----MPKTLQELRVHEN 110 (305)
T ss_dssp ----CCTTCCEEECCSS
T ss_pred ----hhhhhhhhhcccc
Confidence 3456777776665
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.4e-14 Score=120.07 Aligned_cols=197 Identities=18% Similarity=0.168 Sum_probs=136.1
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
....+.+++-++ .+++.+ |.. + -+++++|+|+++ .++. ++.. .+..+++|++|+++++ .++.++.
T Consensus 8 ~~~~~~~v~C~~-~~L~~i-P~~-l--p~~l~~L~Ls~N-~i~~--l~~~------~f~~l~~L~~L~L~~N-~l~~l~~ 72 (266)
T d1p9ag_ 8 KVASHLEVNCDK-RNLTAL-PPD-L--PKDTTILHLSEN-LLYT--FSLA------TLMPYTRLTQLNLDRA-ELTKLQV 72 (266)
T ss_dssp CSTTCCEEECTT-SCCSSC-CSC-C--CTTCCEEECTTS-CCSE--EEGG------GGTTCTTCCEEECTTS-CCCEEEC
T ss_pred ccCCCeEEEccC-CCCCee-CcC-c--CcCCCEEECcCC-cCCC--cCHH------Hhhccccccccccccc-ccccccc
Confidence 455566666655 567764 654 2 257888888876 3442 2211 1226888888888887 5666664
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
. ..+++|++|++++|+ +...+..+..+++|+.|+++++.... +. ......+.++
T Consensus 73 ~----~~l~~L~~L~Ls~N~--------------------l~~~~~~~~~l~~L~~L~l~~~~~~~-~~-~~~~~~l~~l 126 (266)
T d1p9ag_ 73 D----GTLPVLGTLDLSHNQ--------------------LQSLPLLGQTLPALTVLDVSFNRLTS-LP-LGALRGLGEL 126 (266)
T ss_dssp C----SCCTTCCEEECCSSC--------------------CSSCCCCTTTCTTCCEEECCSSCCCC-CC-SSTTTTCTTC
T ss_pred c----ccccccccccccccc--------------------ccccccccccccccccccccccccce-ee-cccccccccc
Confidence 3 367888888887762 12233446677888999988876433 32 3345678889
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|.+.++. +..++ ...+..+++|+.++++++ +++.++.+. +..+++|++|+++++ .++.+|.++..++
T Consensus 127 ~~L~l~~n~-l~~l~-------~~~~~~l~~l~~l~l~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~ 195 (266)
T d1p9ag_ 127 QELYLKGNE-LKTLP-------PGLLTPTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGSH 195 (266)
T ss_dssp CEEECTTSC-CCCCC-------TTTTTTCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred ccccccccc-cceec-------cccccccccchhcccccc-cccccCccc-cccccccceeecccC-CCcccChhHCCCC
Confidence 999998764 55555 123356789999999995 788887654 467899999999885 5889999988899
Q ss_pred CcceeEccC
Q 020667 261 KLHEVQWPG 269 (323)
Q Consensus 261 ~L~~L~l~~ 269 (323)
+|+.|++.|
T Consensus 196 ~L~~L~L~~ 204 (266)
T d1p9ag_ 196 LLPFAFLHG 204 (266)
T ss_dssp CCSEEECCS
T ss_pred CCCEEEecC
Confidence 999999944
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.1e-16 Score=133.63 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=97.2
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
...+|++|++++|. ++......++..+++|++|++++|. +.. .....+..+++|++|++++|..+++...
T Consensus 44 ~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~-l~~--------~~~~~l~~~~~L~~L~Ls~c~~itd~~l 113 (284)
T d2astb2 44 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSD--------PIVNTLAKNSNLVRLNLSGCSGFSEFAL 113 (284)
T ss_dssp CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCH--------HHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred cCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccC-CCc--------HHHHHHhcCCCCcCcccccccccccccc
Confidence 45667777777653 3321222335667777777777764 210 0011122566777777777766553221
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCC-CCCCCCCEEEeecCc-CcceecchhHHhccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSS-TSFQNLTNLVVSCCK-GLKIVLTFSIAKTLV 178 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~-~~l~~L~~L~l~~c~-~l~~l~~~~~l~~l~ 178 (323)
... ...+++|++|++++|+..... . +...+ ...++|+.|++++|. .+++......+.+++
T Consensus 114 ~~l-~~~~~~L~~L~ls~c~~~~~~-----~------------~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~ 175 (284)
T d2astb2 114 QTL-LSSCSRLDELNLSWCFDFTEK-----H------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175 (284)
T ss_dssp HHH-HHHCTTCCEEECCCCTTCCHH-----H------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred chh-hHHHHhccccccccccccccc-----c------------chhhhcccccccchhhhcccccccccccccccccccc
Confidence 111 125677777777776432210 0 00000 123456666666653 233322233345566
Q ss_pred cccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCC
Q 020667 179 RLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDC 246 (323)
Q Consensus 179 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 246 (323)
+|++|++++|..+++.. ...+..+++|++|++++|..+++-.... ..++|+|++|++++|
T Consensus 176 ~L~~L~L~~~~~itd~~-------~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 176 NLVHLDLSDSVMLKNDC-------FQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCSEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred cccccccccccCCCchh-------hhhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence 77777777666554322 1223456667777777766665433222 345666677766666
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.4e-13 Score=118.05 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=140.5
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|+|++ ++++.+ |...+..+++|++|+++++. +..+ ... ....++.++.+.+.....+..++...
T Consensus 32 ~~~~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~ls~n~-l~~i--~~~------~~~~~~~~~~l~~~~~~~~~~l~~~~ 100 (284)
T d1ozna_ 32 AASQRIFLHG-NRISHV-PAASFRACRNLTILWLHSNV-LARI--DAA------AFTGLALLEQLDLSDNAQLRSVDPAT 100 (284)
T ss_dssp TTCSEEECTT-SCCCEE-CTTTTTTCTTCCEEECCSSC-CCEE--CTT------TTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCCEEECcC-CcCCCC-CHHHhhcccccccccccccc-cccc--ccc------cccccccccccccccccccccccchh
Confidence 5788999998 788886 54447889999999998764 4421 111 11256788888887777777775554
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccE
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEY 182 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~ 182 (323)
+..+++|++|++.+|.. ..+ .+.....+++|+.++++++. ++.++ +..+..+++|+.
T Consensus 101 --~~~l~~L~~L~l~~n~~--------~~~-----------~~~~~~~~~~L~~l~l~~N~-l~~i~-~~~f~~~~~L~~ 157 (284)
T d1ozna_ 101 --FHGLGRLHTLHLDRCGL--------QEL-----------GPGLFRGLAALQYLYLQDNA-LQALP-DDTFRDLGNLTH 157 (284)
T ss_dssp --TTTCTTCCEEECTTSCC--------CCC-----------CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred --hcccccCCEEecCCccc--------ccc-----------cccccchhcccchhhhcccc-ccccC-hhHhccccchhh
Confidence 35788899998887631 111 11234567789999998774 55553 345677889999
Q ss_pred EEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCc
Q 020667 183 MEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKL 262 (323)
Q Consensus 183 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L 262 (323)
|+++++. +..++ ...+..+++|+.+.+.++ +++.+.... +..+++|++|+++++...+..|..+..+++|
T Consensus 158 L~l~~N~-l~~l~-------~~~f~~l~~L~~l~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L 227 (284)
T d1ozna_ 158 LFLHGNR-ISSVP-------ERAFRGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (284)
T ss_dssp EECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred cccccCc-ccccc-------hhhhccccccchhhhhhc-cccccChhH-hhhhhhccccccccccccccccccccccccc
Confidence 9998874 66665 233457889999999986 677775543 5778899999998865544444456688999
Q ss_pred ceeEcc
Q 020667 263 HEVQWP 268 (323)
Q Consensus 263 ~~L~l~ 268 (323)
++|++.
T Consensus 228 ~~L~l~ 233 (284)
T d1ozna_ 228 QYLRLN 233 (284)
T ss_dssp CEEECC
T ss_pred CEEEec
Confidence 999993
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=3.8e-13 Score=119.62 Aligned_cols=161 Identities=15% Similarity=0.217 Sum_probs=94.7
Q ss_pred cccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc----hhhhhccCCcceeeecCCCCccccCCCCCCCCCC
Q 020667 79 VMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP----KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNL 154 (323)
Q Consensus 79 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L 154 (323)
..+++++.+.++++ .+..++.. ..+++|++|++.+|. ..+..+++++.+ .+.++. +..+++ +..+++|
T Consensus 194 ~~l~~~~~l~l~~n-~i~~~~~~----~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L-~l~~n~-l~~~~~-~~~~~~L 265 (384)
T d2omza2 194 AKLTNLESLIATNN-QISDITPL----GILTNLDELSLNGNQLKDIGTLASLTNLTDL-DLANNQ-ISNLAP-LSGLTKL 265 (384)
T ss_dssp GGCTTCSEEECCSS-CCCCCGGG----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEE-ECCSSC-CCCCGG-GTTCTTC
T ss_pred ccccccceeeccCC-ccCCCCcc----cccCCCCEEECCCCCCCCcchhhcccccchh-ccccCc-cCCCCc-ccccccC
Confidence 34566777777765 34444332 357889999999882 233445666666 455543 444433 6677889
Q ss_pred CEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcccc
Q 020667 155 TNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFK 234 (323)
Q Consensus 155 ~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 234 (323)
++|+++++. +..++ .+..++.++.+.+..+. +..+. .+..+++++.|+++++ +++.++. ...
T Consensus 266 ~~L~l~~~~-l~~~~---~~~~~~~l~~l~~~~n~-l~~~~---------~~~~~~~l~~L~ls~n-~l~~l~~---l~~ 327 (384)
T d2omza2 266 TELKLGANQ-ISNIS---PLAGLTALTNLELNENQ-LEDIS---------PISNLKNLTYLTLYFN-NISDISP---VSS 327 (384)
T ss_dssp SEEECCSSC-CCCCG---GGTTCTTCSEEECCSSC-CSCCG---------GGGGCTTCSEEECCSS-CCSCCGG---GGG
T ss_pred CEeeccCcc-cCCCC---ccccccccccccccccc-ccccc---------ccchhcccCeEECCCC-CCCCCcc---ccc
Confidence 999988764 44331 24566677777766553 22222 1245566666666664 5555432 245
Q ss_pred CCcccEEeecCCCCCcccCCCCCCCCCcceeEc
Q 020667 235 FPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQW 267 (323)
Q Consensus 235 l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l 267 (323)
+++|++|++++| .++.++ .+..+++|++|++
T Consensus 328 l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l 358 (384)
T d2omza2 328 LTKLQRLFFANN-KVSDVS-SLANLTNINWLSA 358 (384)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGGGCTTCCEEEC
T ss_pred CCCCCEEECCCC-CCCCCh-hHcCCCCCCEEEC
Confidence 666666666665 455555 2455666666666
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.3e-13 Score=114.60 Aligned_cols=177 Identities=20% Similarity=0.195 Sum_probs=131.2
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
++|++|+|++ +.++++ |...+.++++|++|+++++ .++.+. . ++ .+++|++|+++++ .+...+...
T Consensus 31 ~~l~~L~Ls~-N~i~~l-~~~~f~~l~~L~~L~L~~N-~l~~l~--~-~~-------~l~~L~~L~Ls~N-~l~~~~~~~ 96 (266)
T d1p9ag_ 31 KDTTILHLSE-NLLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQ--V-DG-------TLPVLGTLDLSHN-QLQSLPLLG 96 (266)
T ss_dssp TTCCEEECTT-SCCSEE-EGGGGTTCTTCCEEECTTS-CCCEEE--C-CS-------CCTTCCEEECCSS-CCSSCCCCT
T ss_pred cCCCEEECcC-CcCCCc-CHHHhhccccccccccccc-cccccc--c-cc-------ccccccccccccc-ccccccccc
Confidence 6899999998 789986 5555789999999999998 566332 1 12 6899999999998 566666553
Q ss_pred ccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccE
Q 020667 103 LGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEY 182 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~ 182 (323)
..+++|+.|+++++.. ..+ .+.....+.++++|++.++. ++.++ +..+..+++|+.
T Consensus 97 ---~~l~~L~~L~l~~~~~--------~~~-----------~~~~~~~l~~l~~L~l~~n~-l~~l~-~~~~~~l~~l~~ 152 (266)
T d1p9ag_ 97 ---QTLPALTVLDVSFNRL--------TSL-----------PLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEK 152 (266)
T ss_dssp ---TTCTTCCEEECCSSCC--------CCC-----------CSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCE
T ss_pred ---cccccccccccccccc--------cee-----------eccccccccccccccccccc-cceec-cccccccccchh
Confidence 4889999999987631 111 11234567889999998874 55553 345677889999
Q ss_pred EEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 183 MEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 183 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+++++|. +..++ ...+..+++|++|+++++ +++.+|.+. ..+++|+.|+++++|.
T Consensus 153 l~l~~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~L~~lp~~~--~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 153 LSLANNN-LTELP-------AGLLNGLENLDTLLLQEN-SLYTIPKGF--FGSHLLPFAFLHGNPW 207 (266)
T ss_dssp EECTTSC-CSCCC-------TTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred ccccccc-ccccC-------ccccccccccceeecccC-CCcccChhH--CCCCCCCEEEecCCCC
Confidence 9998874 55555 133467899999999996 689888754 6788999999998763
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=1.5e-12 Score=115.75 Aligned_cols=215 Identities=17% Similarity=0.201 Sum_probs=135.6
Q ss_pred ccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccc
Q 020667 16 TVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENF 95 (323)
Q Consensus 16 ~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 95 (323)
.++. .+++|++|++++ ++++++ |+ ++++++|++|+++++..-. + . .+..+++|+.|++.++..
T Consensus 60 ~gl~-~L~nL~~L~Ls~-N~l~~l-~~--l~~L~~L~~L~L~~n~i~~-i--~--------~l~~l~~L~~L~~~~~~~- 122 (384)
T d2omza2 60 DGVE-YLNNLTQINFSN-NQLTDI-TP--LKNLTKLVDILMNNNQIAD-I--T--------PLANLTNLTGLTLFNNQI- 122 (384)
T ss_dssp TTGG-GCTTCCEEECCS-SCCCCC-GG--GTTCTTCCEEECCSSCCCC-C--G--------GGTTCTTCCEEECCSSCC-
T ss_pred cccc-cCCCCCEEeCcC-CcCCCC-cc--ccCCccccccccccccccc-c--c--------cccccccccccccccccc-
Confidence 3566 889999999988 578875 54 6788999999988775321 1 1 122566777776654321
Q ss_pred cccccc-------------------------------------------------------------CccccCCCCccEE
Q 020667 96 TSFCTS-------------------------------------------------------------NLGILEFPSLKEL 114 (323)
Q Consensus 96 ~~~~~~-------------------------------------------------------------~~~~~~l~~L~~L 114 (323)
..+... ......+++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 202 (384)
T d2omza2 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202 (384)
T ss_dssp CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccee
Confidence 110000 0012346788888
Q ss_pred EEcCCc----hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcc
Q 020667 115 WISGCP----KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDR 190 (323)
Q Consensus 115 ~l~~cp----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~ 190 (323)
.++++. .-....++++.+ .+.++ .+.++ +.+..+++|+.+++++|. ++.+. .+..+++|+.|+++++.
T Consensus 203 ~l~~n~i~~~~~~~~~~~L~~L-~l~~n-~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~---~~~~~~~L~~L~l~~~~- 274 (384)
T d2omza2 203 IATNNQISDITPLGILTNLDEL-SLNGN-QLKDI-GTLASLTNLTDLDLANNQ-ISNLA---PLSGLTKLTELKLGANQ- 274 (384)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEE-ECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCG---GGTTCTTCSEEECCSSC-
T ss_pred eccCCccCCCCcccccCCCCEE-ECCCC-CCCCc-chhhcccccchhccccCc-cCCCC---cccccccCCEeeccCcc-
Confidence 888772 112334556666 45554 34444 346778889999988875 55542 36778889999887764
Q ss_pred cceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCc
Q 020667 191 ITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 191 l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~ 270 (323)
+..++ .+..++.++.+.+.++ .++.+.. ...+++++.|+++++ .++.++. +..+++|++|++.++
T Consensus 275 l~~~~---------~~~~~~~l~~l~~~~n-~l~~~~~---~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n 339 (384)
T d2omza2 275 ISNIS---------PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN 339 (384)
T ss_dssp CCCCG---------GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS
T ss_pred cCCCC---------cccccccccccccccc-ccccccc---cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC
Confidence 33333 1246777888888775 4555432 356788889999876 5565653 557888999998553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.6e-14 Score=124.01 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCCCCCCEEEeecCcCcceecchhHHh-ccccccEEEEccCcc-cceeeeccCcccccccccccccCeeeccccccccee
Q 020667 149 TSFQNLTNLVVSCCKGLKIVLTFSIAK-TLVRLEYMEIESCDR-ITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 149 ~~l~~L~~L~l~~c~~l~~l~~~~~l~-~l~~L~~L~l~~c~~-l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
..+++|++|++++|..+++......+. ..++|+.|++++|.. +.+... ..-...+|+|++|++++|..+++-
T Consensus 118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l------~~l~~~~~~L~~L~L~~~~~itd~ 191 (284)
T d2astb2 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL------STLVRRCPNLVHLDLSDSVMLKND 191 (284)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH------HHHHHHCTTCSEEECTTCTTCCGG
T ss_pred HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccc------cccccccccccccccccccCCCch
Confidence 357899999999998877643333333 357899999998743 332110 011246899999999999988765
Q ss_pred cCCCccccCCcccEEeecCCCCCcc-cCCCCCCCCCcceeEccCc
Q 020667 227 CSGNCAFKFPSLERLVLDDCPSMKI-FSEGNSSTPKLHEVQWPGE 270 (323)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~L~~L~l~~~ 270 (323)
.... ...+++|++|++++|+.++. -...+..+++|+.|++.|+
T Consensus 192 ~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 192 CFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhhh-hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 4432 45789999999999998862 2334567899999999776
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=1.5e-12 Score=107.69 Aligned_cols=186 Identities=16% Similarity=0.227 Sum_probs=122.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+|++|++.+| +++.+ +. +..+++|++|+++++. +..+ . .+..+++|++++++++. ++.++.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l-~~--l~~l~~L~~L~ls~n~-i~~~--~--------~l~~l~~l~~l~~~~n~-~~~i~~ 102 (227)
T d1h6ua2 39 DLDGITTLSAFGT-GVTTI-EG--VQYLNNLIGLELKDNQ-ITDL--A--------PLKNLTKITELELSGNP-LKNVSA 102 (227)
T ss_dssp HHHTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECCSSC-CCCC--G--------GGTTCCSCCEEECCSCC-CSCCGG
T ss_pred HcCCcCEEECCCC-CCCcc-hh--HhcCCCCcEeecCCce-eecc--c--------ccccccccccccccccc-cccccc
Confidence 6778888888884 57764 43 6788888888888764 2211 1 12367888888887763 444432
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|+.+.+.+|... .+ ..+...+.++.+.++++.. ... ..+.+.++|
T Consensus 103 ----l~~l~~L~~l~l~~~~~~--------------------~~-~~~~~~~~~~~l~~~~~~~-~~~---~~~~~~~~L 153 (227)
T d1h6ua2 103 ----IAGLQSIKTLDLTSTQIT--------------------DV-TPLAGLSNLQVLYLDLNQI-TNI---SPLAGLTNL 153 (227)
T ss_dssp ----GTTCTTCCEEECTTSCCC--------------------CC-GGGTTCTTCCEEECCSSCC-CCC---GGGGGCTTC
T ss_pred ----cccccccccccccccccc--------------------cc-chhccccchhhhhchhhhh-chh---hhhcccccc
Confidence 236778888887766210 01 1233456777787776643 222 235677788
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCC
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTP 260 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 260 (323)
+.|++.+|. +..+. .+..+++|+.|+++++ ++++++. ...+++|++|++++| .++.+|. +..++
T Consensus 154 ~~L~l~~n~-~~~~~---------~l~~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~ 217 (227)
T d1h6ua2 154 QYLSIGNAQ-VSDLT---------PLANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-LANTS 217 (227)
T ss_dssp CEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCT
T ss_pred ccccccccc-cccch---------hhcccccceecccCCC-ccCCChh---hcCCCCCCEEECcCC-cCCCCcc-cccCC
Confidence 888887764 33332 2357788888888886 6777653 356888999999887 5777774 56788
Q ss_pred CcceeEc
Q 020667 261 KLHEVQW 267 (323)
Q Consensus 261 ~L~~L~l 267 (323)
+|+.|++
T Consensus 218 ~L~~L~l 224 (227)
T d1h6ua2 218 NLFIVTL 224 (227)
T ss_dssp TCCEEEE
T ss_pred CCCEEEe
Confidence 8888887
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=3.4e-12 Score=110.22 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=151.3
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
.+. ++++|++|+++++ .+..+.|.. +.++++|++|+++++. ++ .++.. .++.++.|.+.++ .+.
T Consensus 50 ~f~-~l~~L~~L~l~~n-~~~~i~~~~-f~~l~~L~~L~l~~n~-l~--~l~~~---------~~~~l~~L~~~~n-~l~ 113 (305)
T d1xkua_ 50 DFK-NLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQ-LK--ELPEK---------MPKTLQELRVHEN-EIT 113 (305)
T ss_dssp TTT-TCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CS--BCCSS---------CCTTCCEEECCSS-CCC
T ss_pred Hhh-ccccccccccccc-cccccchhh-hhCCCccCEecccCCc-cC--cCccc---------hhhhhhhhhcccc-chh
Confidence 466 8999999999994 566654544 7899999999999884 55 22221 4568888888775 344
Q ss_pred cccccCccccCCCCccEEEEcCCchh--------hhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCccee
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKF--------MERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIV 168 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~--------~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 168 (323)
.++... ......+..+.+..++.. +..+++++.+ .+.++ .+..+|.. .+++|++|+++++......
T Consensus 114 ~l~~~~--~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l-~l~~n-~l~~l~~~--~~~~L~~L~l~~n~~~~~~ 187 (305)
T d1xkua_ 114 KVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI-RIADT-NITTIPQG--LPPSLTELHLDGNKITKVD 187 (305)
T ss_dssp BBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE-ECCSS-CCCSCCSS--CCTTCSEEECTTSCCCEEC
T ss_pred hhhhhh--hhccccccccccccccccccCCCccccccccccCcc-ccccC-CccccCcc--cCCccCEEECCCCcCCCCC
Confidence 443322 124566677777666322 2223444444 23333 34556543 4689999999988755544
Q ss_pred cchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCC
Q 020667 169 LTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+..+.+++.++.|++++|. +..++ ...+..+++|++|+++++ +++.++.+ +..+++|++|+++++ +
T Consensus 188 --~~~~~~~~~l~~L~~s~n~-l~~~~-------~~~~~~l~~L~~L~L~~N-~L~~lp~~--l~~l~~L~~L~Ls~N-~ 253 (305)
T d1xkua_ 188 --AASLKGLNNLAKLGLSFNS-ISAVD-------NGSLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN-N 253 (305)
T ss_dssp --TGGGTTCTTCCEEECCSSC-CCEEC-------TTTGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS-C
T ss_pred --hhHhhcccccccccccccc-ccccc-------cccccccccceeeecccc-cccccccc--cccccCCCEEECCCC-c
Confidence 5567889999999999874 66665 234467899999999997 89988753 477999999999995 6
Q ss_pred CcccCCC-------CCCCCCcceeEccCc
Q 020667 249 MKIFSEG-------NSSTPKLHEVQWPGE 270 (323)
Q Consensus 249 l~~lp~~-------~~~~~~L~~L~l~~~ 270 (323)
++.++.. ....++|+.+++.|.
T Consensus 254 i~~i~~~~f~~~~~~~~~~~L~~L~L~~N 282 (305)
T d1xkua_ 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSN 282 (305)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred cCccChhhccCcchhcccCCCCEEECCCC
Confidence 8877643 234678999999553
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.5e-12 Score=105.65 Aligned_cols=85 Identities=24% Similarity=0.365 Sum_probs=63.0
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccC
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSN 102 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 102 (323)
+++++|++++ +.++.+ |...+.++++|++|+++++.... .++.. ....++.++++.+..+..+..++...
T Consensus 29 ~~l~~L~Ls~-n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~--~i~~~------~f~~l~~l~~l~~~~~n~l~~~~~~~ 98 (242)
T d1xwdc1 29 RNAIELRFVL-TKLRVI-QKGAFSGFGDLEKIEISQNDVLE--VIEAD------VFSNLPKLHEIRIEKANNLLYINPEA 98 (242)
T ss_dssp SCCSEEEEES-CCCCEE-CTTTTTTCTTCCEEEEESCTTCC--EECSS------SEESCTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCEEECcC-CcCCcc-ChhHhhccchhhhhhhccccccc--eeecc------cccccccccccccccccccccccccc
Confidence 5899999998 678876 55547889999999999887655 22211 11267889999888777777666553
Q ss_pred ccccCCCCccEEEEcCC
Q 020667 103 LGILEFPSLKELWISGC 119 (323)
Q Consensus 103 ~~~~~l~~L~~L~l~~c 119 (323)
+..+++|+.+++.++
T Consensus 99 --~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 99 --FQNLPNLQYLLISNT 113 (242)
T ss_dssp --EECCTTCCEEEEESC
T ss_pred --ccccccccccccchh
Confidence 357899999999886
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.35 E-value=8.7e-12 Score=102.99 Aligned_cols=169 Identities=17% Similarity=0.266 Sum_probs=120.4
Q ss_pred cccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccc
Q 020667 17 VMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFT 96 (323)
Q Consensus 17 ~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 96 (323)
++. .+++|++|++++ +.++++ ++ +..+++|++++++++. ++. +. .+..+++|+.+.++++.. .
T Consensus 58 ~l~-~l~~L~~L~ls~-n~i~~~-~~--l~~l~~l~~l~~~~n~-~~~--i~--------~l~~l~~L~~l~l~~~~~-~ 120 (227)
T d1h6ua2 58 GVQ-YLNNLIGLELKD-NQITDL-AP--LKNLTKITELELSGNP-LKN--VS--------AIAGLQSIKTLDLTSTQI-T 120 (227)
T ss_dssp TGG-GCTTCCEEECCS-SCCCCC-GG--GTTCCSCCEEECCSCC-CSC--CG--------GGTTCTTCCEEECTTSCC-C
T ss_pred hHh-cCCCCcEeecCC-ceeecc-cc--cccccccccccccccc-ccc--cc--------cccccccccccccccccc-c
Confidence 477 899999999999 567775 43 6899999999999874 331 11 233789999999988753 3
Q ss_pred cccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 97 SFCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
.+... ...+.++.+.+.+|.. . .. ..+...++|++|++++|. +.+. ..+++
T Consensus 121 ~~~~~----~~~~~~~~l~~~~~~~--------~------------~~-~~~~~~~~L~~L~l~~n~-~~~~---~~l~~ 171 (227)
T d1h6ua2 121 DVTPL----AGLSNLQVLYLDLNQI--------T------------NI-SPLAGLTNLQYLSIGNAQ-VSDL---TPLAN 171 (227)
T ss_dssp CCGGG----TTCTTCCEEECCSSCC--------C------------CC-GGGGGCTTCCEEECCSSC-CCCC---GGGTT
T ss_pred ccchh----ccccchhhhhchhhhh--------c------------hh-hhhccccccccccccccc-cccc---hhhcc
Confidence 33221 2567888888776521 0 01 124466789999998875 3333 23678
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecC
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDD 245 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 245 (323)
+++|++|++++| .+++++ .+..+++|++|++++| +++.++. ...+++|++|++++
T Consensus 172 l~~L~~L~Ls~n-~l~~l~---------~l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 172 LSKLTTLKADDN-KISDIS---------PLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN 226 (227)
T ss_dssp CTTCCEEECCSS-CCCCCG---------GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred cccceecccCCC-ccCCCh---------hhcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence 899999999987 466665 2457899999999997 7888863 35789999999864
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.31 E-value=9.6e-12 Score=101.54 Aligned_cols=184 Identities=14% Similarity=0.164 Sum_probs=111.0
Q ss_pred cccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCc
Q 020667 24 NLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNL 103 (323)
Q Consensus 24 ~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 103 (323)
+....++.. ..+++.++. ..+.+|+.|++++|. ++.+ ..+..+++|++|+++++ .+++++..
T Consensus 25 ~~i~~~l~~-~~~~~~~~~---~~L~~L~~L~l~~~~-i~~l----------~~l~~l~~L~~L~L~~n-~i~~l~~~-- 86 (210)
T d1h6ta2 25 ETIKDNLKK-KSVTDAVTQ---NELNSIDQIIANNSD-IKSV----------QGIQYLPNVTKLFLNGN-KLTDIKPL-- 86 (210)
T ss_dssp HHHHHHTTC-SCTTSEECH---HHHHTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECCSS-CCCCCGGG--
T ss_pred HHHHHHhCc-CccCCccCH---HHhcCccEEECcCCC-CCCc----------hhHhhCCCCCEEeCCCc-cccCcccc--
Confidence 333334443 444544332 356677777777663 2211 11236777888888776 45555432
Q ss_pred cccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEE
Q 020667 104 GILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYM 183 (323)
Q Consensus 104 ~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 183 (323)
..+++|++|++++|. ++ .+ +.+..+++|+.|++++|.. ..+ ..+.+++.|+.+
T Consensus 87 --~~l~~L~~L~l~~n~--------i~------------~l-~~l~~l~~L~~L~l~~~~~-~~~---~~l~~l~~l~~l 139 (210)
T d1h6ta2 87 --ANLKNLGWLFLDENK--------VK------------DL-SSLKDLKKLKSLSLEHNGI-SDI---NGLVHLPQLESL 139 (210)
T ss_dssp --TTCTTCCEEECCSSC--------CC------------CG-GGGTTCTTCCEEECTTSCC-CCC---GGGGGCTTCCEE
T ss_pred --ccCcccccccccccc--------cc------------cc-ccccccccccccccccccc-ccc---cccccccccccc
Confidence 367778888777652 11 12 2355677788888877753 333 235677778888
Q ss_pred EEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcc
Q 020667 184 EIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLH 263 (323)
Q Consensus 184 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 263 (323)
+++++. +.+.. ....+++|+.+++.++ +++.++. ...+++|++|++++| .++.+|. +..+++|+
T Consensus 140 ~~~~n~-l~~~~---------~~~~l~~L~~l~l~~n-~l~~i~~---l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~ 203 (210)
T d1h6ta2 140 YLGNNK-ITDIT---------VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLD 203 (210)
T ss_dssp ECCSSC-CCCCG---------GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCS
T ss_pred cccccc-ccccc---------cccccccccccccccc-ccccccc---ccCCCCCCEEECCCC-CCCCChh-hcCCCCCC
Confidence 877654 33332 2246778888888875 5666542 346788888888775 5677763 66778888
Q ss_pred eeEcc
Q 020667 264 EVQWP 268 (323)
Q Consensus 264 ~L~l~ 268 (323)
+|+++
T Consensus 204 ~L~Ls 208 (210)
T d1h6ta2 204 VLELF 208 (210)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 88873
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.31 E-value=1.1e-11 Score=100.31 Aligned_cols=183 Identities=16% Similarity=0.233 Sum_probs=108.0
Q ss_pred CCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccccccc
Q 020667 22 IQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTS 101 (323)
Q Consensus 22 l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 101 (323)
+++...+.+.. ..+++..+ ...++++++|+++++. +..+ ..+..|++|++|+++++ .+..++.
T Consensus 17 l~~~i~~~l~~-~~~~~~~~---~~~l~~l~~L~l~~~~-i~~l----------~~l~~l~nL~~L~Ls~N-~l~~~~~- 79 (199)
T d2omxa2 17 LAEKMKTVLGK-TNVTDTVS---QTDLDQVTTLQADRLG-IKSI----------DGVEYLNNLTQINFSNN-QLTDITP- 79 (199)
T ss_dssp HHHHHHHHTTC-SSTTSEEC---HHHHTTCCEEECTTSC-CCCC----------TTGGGCTTCCEEECCSS-CCCCCGG-
T ss_pred HHHHHHHHhCC-CCCCCccC---HHHhcCCCEEECCCCC-CCCc----------cccccCCCcCcCccccc-cccCccc-
Confidence 34444445544 44555422 2456777777777663 2211 11236777888887776 4555543
Q ss_pred CccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhcccccc
Q 020667 102 NLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLE 181 (323)
Q Consensus 102 ~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~ 181 (323)
+..+++|++|++++|.. . .+ +.+..+++|+.|++++|.... . ..+..+++|+
T Consensus 80 ---l~~l~~L~~L~l~~n~~--------~------------~~-~~l~~l~~L~~L~l~~~~~~~-~---~~~~~l~~L~ 131 (199)
T d2omxa2 80 ---LKNLTKLVDILMNNNQI--------A------------DI-TPLANLTNLTGLTLFNNQITD-I---DPLKNLTNLN 131 (199)
T ss_dssp ---GTTCTTCCEEECCSSCC--------C------------CC-GGGTTCTTCSEEECCSSCCCC-C---GGGTTCTTCS
T ss_pred ---ccCCccccccccccccc--------c------------cc-ccccccccccccccccccccc-c---cccchhhhhH
Confidence 23677788887776521 1 11 124566777777777665332 2 2356677788
Q ss_pred EEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCC
Q 020667 182 YMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPK 261 (323)
Q Consensus 182 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~ 261 (323)
.|++++|. +..++ .+..+++|+.|++.++ +++.++. +..+++|++|++++| .++.++. +..+++
T Consensus 132 ~L~l~~n~-l~~~~---------~l~~~~~L~~L~l~~n-~l~~l~~---l~~l~~L~~L~ls~N-~i~~i~~-l~~L~~ 195 (199)
T d2omxa2 132 RLELSSNT-ISDIS---------ALSGLTSLQQLNFSSN-QVTDLKP---LANLTTLERLDISSN-KVSDISV-LAKLTN 195 (199)
T ss_dssp EEECCSSC-CCCCG---------GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-GGGCTT
T ss_pred Hhhhhhhh-hcccc---------cccccccccccccccc-cccCCcc---ccCCCCCCEEECCCC-CCCCCcc-ccCCCC
Confidence 88877764 33332 2346777888888775 5666642 356788888888776 4666653 456677
Q ss_pred ccee
Q 020667 262 LHEV 265 (323)
Q Consensus 262 L~~L 265 (323)
|++|
T Consensus 196 L~~L 199 (199)
T d2omxa2 196 LESL 199 (199)
T ss_dssp CSEE
T ss_pred CCcC
Confidence 7664
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=5.1e-11 Score=101.62 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=131.9
Q ss_pred EeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccC
Q 020667 28 LTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILE 107 (323)
Q Consensus 28 L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 107 (323)
++.++ .+++.+ |..+ .+++++|+|+++ .++ .++.. .+..+++|++|+++++ .+..++.... ..
T Consensus 16 v~c~~-~~L~~i-P~~i---p~~~~~L~Ls~N-~i~--~i~~~------~f~~l~~L~~L~ls~n-~l~~i~~~~~--~~ 78 (284)
T d1ozna_ 16 TSCPQ-QGLQAV-PVGI---PAASQRIFLHGN-RIS--HVPAA------SFRACRNLTILWLHSN-VLARIDAAAF--TG 78 (284)
T ss_dssp EECCS-SCCSSC-CTTC---CTTCSEEECTTS-CCC--EECTT------TTTTCTTCCEEECCSS-CCCEECTTTT--TT
T ss_pred EEcCC-CCCCcc-CCCC---CCCCCEEECcCC-cCC--CCCHH------Hhhccccccccccccc-cccccccccc--cc
Confidence 34444 346664 6542 356888888886 455 22221 2236788888888876 4555554432 34
Q ss_pred CCCccEEEEcCCchhhhhccCCcceeeecCCCCcccc-CCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEc
Q 020667 108 FPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDL-VPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIE 186 (323)
Q Consensus 108 l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~ 186 (323)
++.++.+.+..+ ..+..+ +..+.++++|++|+++++.. ..+. .......++|+.+++.
T Consensus 79 ~~~~~~l~~~~~-------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~-~~~~~~~~~L~~l~l~ 137 (284)
T d1ozna_ 79 LALLEQLDLSDN-------------------AQLRSVDPATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQ 137 (284)
T ss_dssp CTTCCEEECCSC-------------------TTCCCCCTTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECC
T ss_pred cccccccccccc-------------------cccccccchhhcccccCCEEecCCccc-cccc-ccccchhcccchhhhc
Confidence 566666654432 233333 33467889999999998863 3332 3456778899999999
Q ss_pred cCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeE
Q 020667 187 SCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQ 266 (323)
Q Consensus 187 ~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~ 266 (323)
++. ++.++ ...+..+++|+.|++.++ +++.++... +..+++|+++++.++....-.|..+..+++|++|+
T Consensus 138 ~N~-l~~i~-------~~~f~~~~~L~~L~l~~N-~l~~l~~~~-f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~ 207 (284)
T d1ozna_ 138 DNA-LQALP-------DDTFRDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (284)
T ss_dssp SSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccc-ccccC-------hhHhccccchhhcccccC-cccccchhh-hccccccchhhhhhccccccChhHhhhhhhccccc
Confidence 864 66665 233457889999999996 789887754 56789999999999766666688888999999999
Q ss_pred ccC
Q 020667 267 WPG 269 (323)
Q Consensus 267 l~~ 269 (323)
+.+
T Consensus 208 l~~ 210 (284)
T d1ozna_ 208 LFA 210 (284)
T ss_dssp CCS
T ss_pred ccc
Confidence 933
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.25 E-value=4.6e-11 Score=96.50 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=116.6
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.++++++|++++ ++++.+ +. ++.+++|++|+++++ .++.+ . .+..+++|++|+++++. +..++.
T Consensus 38 ~l~~l~~L~l~~-~~i~~l-~~--l~~l~nL~~L~Ls~N-~l~~~--~--------~l~~l~~L~~L~l~~n~-~~~~~~ 101 (199)
T d2omxa2 38 DLDQVTTLQADR-LGIKSI-DG--VEYLNNLTQINFSNN-QLTDI--T--------PLKNLTKLVDILMNNNQ-IADITP 101 (199)
T ss_dssp HHTTCCEEECTT-SCCCCC-TT--GGGCTTCCEEECCSS-CCCCC--G--------GGTTCTTCCEEECCSSC-CCCCGG
T ss_pred HhcCCCEEECCC-CCCCCc-cc--cccCCCcCcCccccc-cccCc--c--------cccCCcccccccccccc-cccccc
Confidence 689999999999 567764 44 789999999999997 45421 1 13489999999999874 444443
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
...+++|+.|++++|... . + ..+..+++|+.|++++|. +..+ ..+..+++|
T Consensus 102 ----l~~l~~L~~L~l~~~~~~--------~------------~-~~~~~l~~L~~L~l~~n~-l~~~---~~l~~~~~L 152 (199)
T d2omxa2 102 ----LANLTNLTGLTLFNNQIT--------D------------I-DPLKNLTNLNRLELSSNT-ISDI---SALSGLTSL 152 (199)
T ss_dssp ----GTTCTTCSEEECCSSCCC--------C------------C-GGGTTCTTCSEEECCSSC-CCCC---GGGTTCTTC
T ss_pred ----cccccccccccccccccc--------c------------c-cccchhhhhHHhhhhhhh-hccc---ccccccccc
Confidence 247899999999876311 0 1 224567889999998875 4443 246788899
Q ss_pred cEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEE
Q 020667 181 EYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERL 241 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L 241 (323)
+.|++.+|. +.+++ .+..+++|++|+++++ ++++++. ...+++|++|
T Consensus 153 ~~L~l~~n~-l~~l~---------~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L 199 (199)
T d2omxa2 153 QQLNFSSNQ-VTDLK---------PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL 199 (199)
T ss_dssp SEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred ccccccccc-ccCCc---------cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence 999998864 55554 2457889999999997 6887752 3567888765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.23 E-value=7.8e-10 Score=96.30 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=50.6
Q ss_pred cccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccCccccccccchhhhceeee
Q 020667 208 TFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPGEARWAWKDDLNTTIQKVI 287 (323)
Q Consensus 208 ~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~~~~~~~~~~l~~~l~~l~ 287 (323)
.+++|++|++++| +++.++. .+++|++|++++| .++.+|. .+++|++|+++++. ..-.+++|.++++++
T Consensus 282 ~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~ 350 (353)
T d1jl5a_ 282 LPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLR 350 (353)
T ss_dssp CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred cCCCCCEEECCCC-ccCcccc-----ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCccccccCeeE
Confidence 4578999999987 6877763 2688999999765 6788886 45689999995543 222335667777776
Q ss_pred cc
Q 020667 288 FP 289 (323)
Q Consensus 288 ~~ 289 (323)
+.
T Consensus 351 ~~ 352 (353)
T d1jl5a_ 351 MN 352 (353)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.21 E-value=8e-11 Score=95.91 Aligned_cols=162 Identities=9% Similarity=0.179 Sum_probs=116.8
Q ss_pred cCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 21 GIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
.+.+|++|++++ +.++++ +. +..+++|++|+++++. ++.+ . .+..+++|++|+++++ .++.++.
T Consensus 44 ~L~~L~~L~l~~-~~i~~l-~~--l~~l~~L~~L~L~~n~-i~~l--~--------~~~~l~~L~~L~l~~n-~i~~l~~ 107 (210)
T d1h6ta2 44 ELNSIDQIIANN-SDIKSV-QG--IQYLPNVTKLFLNGNK-LTDI--K--------PLANLKNLGWLFLDEN-KVKDLSS 107 (210)
T ss_dssp HHHTCCEEECTT-SCCCCC-TT--GGGCTTCCEEECCSSC-CCCC--G--------GGTTCTTCCEEECCSS-CCCCGGG
T ss_pred HhcCccEEECcC-CCCCCc-hh--HhhCCCCCEEeCCCcc-ccCc--c--------ccccCccccccccccc-ccccccc
Confidence 578999999998 467764 44 6889999999999874 4421 1 1237899999999987 5777663
Q ss_pred cCccccCCCCccEEEEcCCc----hhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhc
Q 020667 101 SNLGILEFPSLKELWISGCP----KFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKT 176 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp----~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~ 176 (323)
. ..+++|+.|++.+|. ..+..++.++.+ .+.++ .+... .....+++|+++++++|. +.++ + .+.+
T Consensus 108 l----~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l-~~~~n-~l~~~-~~~~~l~~L~~l~l~~n~-l~~i--~-~l~~ 176 (210)
T d1h6ta2 108 L----KDLKKLKSLSLEHNGISDINGLVHLPQLESL-YLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDI--V-PLAG 176 (210)
T ss_dssp G----TTCTTCCEEECTTSCCCCCGGGGGCTTCCEE-ECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCC--G-GGTT
T ss_pred c----ccccccccccccccccccccccccccccccc-ccccc-ccccc-cccccccccccccccccc-cccc--c-cccC
Confidence 2 478999999999983 223344455554 23333 34443 346678999999999985 5555 2 3788
Q ss_pred cccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 177 LVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 177 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
+++|+.|++++|. +++++ .+..+++|++|+|++
T Consensus 177 l~~L~~L~Ls~N~-i~~l~---------~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCCEEECCSSC-CCBCG---------GGTTCTTCSEEEEEE
T ss_pred CCCCCEEECCCCC-CCCCh---------hhcCCCCCCEEEccC
Confidence 9999999999884 77765 246789999999875
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.1e-10 Score=92.32 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=102.7
Q ss_pred cEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccc
Q 020667 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGI 105 (323)
Q Consensus 26 ~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 105 (323)
+.++.++ .+++.+ |..+ .+++++|+++++. ++ .++.. .+..+++|++|+++++.....++... +
T Consensus 11 ~~i~c~~-~~l~~i-P~~l---~~~l~~L~Ls~n~-i~--~l~~~------~f~~l~~L~~L~ls~n~~~~~i~~~~--f 74 (242)
T d1xwdc1 11 RVFLCQE-SKVTEI-PSDL---PRNAIELRFVLTK-LR--VIQKG------AFSGFGDLEKIEISQNDVLEVIEADV--F 74 (242)
T ss_dssp SEEEEES-CSCSSC-CSCS---CSCCSEEEEESCC-CC--EECTT------TTTTCTTCCEEEEESCTTCCEECSSS--E
T ss_pred CEEEEeC-CCCCCc-CCCC---CCCCCEEECcCCc-CC--ccChh------Hhhccchhhhhhhccccccceeeccc--c
Confidence 5677776 567764 6642 3589999999864 55 33322 12278999999999986655555433 3
Q ss_pred cCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccC-CCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEE
Q 020667 106 LEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLV-PSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYME 184 (323)
Q Consensus 106 ~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~ 184 (323)
..+++++++.+..|.... .++ ..+.++++|++++++++. ++..+.......+..+..+.
T Consensus 75 ~~l~~l~~l~~~~~n~l~-------------------~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~ 134 (242)
T d1xwdc1 75 SNLPKLHEIRIEKANNLL-------------------YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDI 134 (242)
T ss_dssp ESCTTCCEEEEECCTTCC-------------------EECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEE
T ss_pred cccccccccccccccccc-------------------ccccccccccccccccccchhh-hccccccccccccccccccc
Confidence 468888998887653221 111 223455666666666653 33332222222222232222
Q ss_pred EccCcccceeeeccCccccccccc-ccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCc
Q 020667 185 IESCDRITEIVLVDDVAAKDEVIT-FRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKL 262 (323)
Q Consensus 185 l~~c~~l~~i~~~~~~~~~~~~~~-~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L 262 (323)
. ++..+..++. ..+.. ...++.|++.+ .+++.++... ...+++.++...++..++.+|.+ +..+++|
T Consensus 135 ~-~n~~l~~i~~-------~~~~~~~~~l~~L~l~~-n~l~~i~~~~--~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L 203 (242)
T d1xwdc1 135 Q-DNINIHTIER-------NSFVGLSFESVILWLNK-NGIQEIHNCA--FNGTQLDELNLSDNNNLEELPNDVFHGASGP 203 (242)
T ss_dssp E-SCTTCCEECT-------TSSTTSBSSCEEEECCS-SCCCEECTTT--TTTCCEEEEECTTCTTCCCCCTTTTTTSCCC
T ss_pred c-cccccccccc-------cccccccccceeeeccc-cccccccccc--ccchhhhccccccccccccccHHHhcCCCCC
Confidence 2 2233444431 11111 22455555554 3455554433 33455555554455556666554 2455666
Q ss_pred ceeEc
Q 020667 263 HEVQW 267 (323)
Q Consensus 263 ~~L~l 267 (323)
++|++
T Consensus 204 ~~L~L 208 (242)
T d1xwdc1 204 VILDI 208 (242)
T ss_dssp SEEEC
T ss_pred CEEEC
Confidence 66666
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.02 E-value=2.3e-09 Score=93.27 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=57.0
Q ss_pred ccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCccccCCcccEEeecCCCCCcccCCC
Q 020667 176 TLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG 255 (323)
Q Consensus 176 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 255 (323)
.+++|++|++++|. +..++ ..+++|+.|+++++ ++++++. .+++|++|++++|+ ++.+|.
T Consensus 282 ~~~~L~~L~Ls~N~-l~~lp-----------~~~~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~- 341 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIELP-----------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPD- 341 (353)
T ss_dssp CCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCC-
T ss_pred cCCCCCEEECCCCc-cCccc-----------cccCCCCEEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCCc-
Confidence 46789999999985 77776 35789999999986 7888864 25789999999986 889997
Q ss_pred CCCCCCcceeEc
Q 020667 256 NSSTPKLHEVQW 267 (323)
Q Consensus 256 ~~~~~~L~~L~l 267 (323)
.+.+|+.|.+
T Consensus 342 --~~~~L~~L~~ 351 (353)
T d1jl5a_ 342 --IPESVEDLRM 351 (353)
T ss_dssp --CCTTCCEEEC
T ss_pred --cccccCeeEC
Confidence 4568888887
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=9.7e-10 Score=85.51 Aligned_cols=130 Identities=14% Similarity=0.195 Sum_probs=86.0
Q ss_pred ccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS 97 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 97 (323)
+. ++.+|++|+|++ ++++.+ |. ++..+++|+.|+++++. ++.+ . .+ ..+++|++|++++| .+..
T Consensus 14 ~~-n~~~lr~L~L~~-n~I~~i-~~-~~~~l~~L~~L~Ls~N~-i~~l--~-~~-------~~l~~L~~L~ls~N-~i~~ 77 (162)
T d1a9na_ 14 YT-NAVRDRELDLRG-YKIPVI-EN-LGATLDQFDAIDFSDNE-IRKL--D-GF-------PLLRRLKTLLVNNN-RICR 77 (162)
T ss_dssp EE-CTTSCEEEECTT-SCCCSC-CC-GGGGTTCCSEEECCSSC-CCEE--C-CC-------CCCSSCCEEECCSS-CCCE
T ss_pred cc-CcCcCcEEECCC-CCCCcc-Cc-cccccccCCEEECCCCC-CCcc--C-Cc-------ccCcchhhhhcccc-cccC
Confidence 55 788999999998 678875 54 25779999999999874 5533 1 12 27889999999988 4676
Q ss_pred ccccCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecc--hhHHh
Q 020667 98 FCTSNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLT--FSIAK 175 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~ 175 (323)
++... ...+++|+.|++++|. +..+ .++ ..+..+++|++|++++|+ +...+. ...+.
T Consensus 78 l~~~~--~~~l~~L~~L~L~~N~--------i~~~---------~~l-~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~ 136 (162)
T d1a9na_ 78 IGEGL--DQALPDLTELILTNNS--------LVEL---------GDL-DPLASLKSLTYLCILRNP-VTNKKHYRLYVIY 136 (162)
T ss_dssp ECSCH--HHHCTTCCEEECCSCC--------CCCG---------GGG-GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHH
T ss_pred CCccc--cccccccccceecccc--------cccc---------ccc-cccccccccchhhcCCCc-cccccchHHHHHH
Confidence 66543 1358888888888762 1111 111 224567788888888875 333321 12356
Q ss_pred ccccccEEE
Q 020667 176 TLVRLEYME 184 (323)
Q Consensus 176 ~l~~L~~L~ 184 (323)
.+|+|+.|+
T Consensus 137 ~lp~L~~LD 145 (162)
T d1a9na_ 137 KVPQVRVLD 145 (162)
T ss_dssp HCTTCSEET
T ss_pred HCCCcCeeC
Confidence 677777765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4e-09 Score=81.90 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=15.1
Q ss_pred CCCCCCEEEeecCcCcceecchhHHhccccccEEEEccC
Q 020667 150 SFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
.+++|++|++++|. ++.++ +..+..+++|+.|++++|
T Consensus 61 ~l~~L~~L~ls~N~-i~~l~-~~~~~~l~~L~~L~L~~N 97 (162)
T d1a9na_ 61 LLRRLKTLLVNNNR-ICRIG-EGLDQALPDLTELILTNN 97 (162)
T ss_dssp CCSSCCEEECCSSC-CCEEC-SCHHHHCTTCCEEECCSC
T ss_pred cCcchhhhhccccc-ccCCC-ccccccccccccceeccc
Confidence 34444444444443 33331 112233444444444443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.79 E-value=2.3e-08 Score=79.72 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=88.7
Q ss_pred CccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccc
Q 020667 140 HLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLN 219 (323)
Q Consensus 140 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~ 219 (323)
.+.++|..+ .+++++|+++++. ++.......+.++++|+.|+++++. +..++ ...+..+++|++|++++
T Consensus 19 ~L~~iP~~l--p~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~-------~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 19 GLKEIPRDI--PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-------PNAFEGASHIQELQLGE 87 (192)
T ss_dssp CCSSCCSCC--CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-------TTTTTTCTTCCEEECCS
T ss_pred CcCccCCCC--CCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccc-ccccc-------ccccccccccceeeecc
Confidence 456777654 3689999999986 4433234567889999999999876 44443 24456789999999999
Q ss_pred ccccceecCCCccccCCcccEEeecCCCCCcccCCC-CCCCCCcceeEccC
Q 020667 220 LESLTSFCSGNCAFKFPSLERLVLDDCPSMKIFSEG-NSSTPKLHEVQWPG 269 (323)
Q Consensus 220 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~L~l~~ 269 (323)
. +++.++... +..+++|++|++++ +.++.+|.+ +..+++|+++++.+
T Consensus 88 N-~l~~l~~~~-F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 88 N-KIKEISNKM-FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp C-CCCEECSSS-STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred c-cccccCHHH-HhCCCcccccccCC-ccccccCHHHhcCCcccccccccc
Confidence 5 899998764 67899999999988 467878765 46889999999944
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=2.4e-08 Score=79.63 Aligned_cols=127 Identities=11% Similarity=0.093 Sum_probs=69.7
Q ss_pred ccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCcc
Q 020667 25 LMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLG 104 (323)
Q Consensus 25 L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 104 (323)
.++++.++ ++++.+ |..+ .+++++|+|+++..-. ......+ ..+++|++|+++++. +..++...
T Consensus 10 ~~~v~Cs~-~~L~~i-P~~l---p~~l~~L~Ls~N~i~~-~~~~~~f-------~~l~~L~~L~L~~N~-i~~~~~~~-- 73 (192)
T d1w8aa_ 10 GTTVDCTG-RGLKEI-PRDI---PLHTTELLLNDNELGR-ISSDGLF-------GRLPHLVKLELKRNQ-LTGIEPNA-- 73 (192)
T ss_dssp TTEEECTT-SCCSSC-CSCC---CTTCSEEECCSCCCCS-BCCSCSG-------GGCTTCCEEECCSSC-CCCBCTTT--
T ss_pred CCEEEEeC-CCcCcc-CCCC---CCCCCEEEeCCCCCcc-ccccccc-------CCCceEeeeeccccc-cccccccc--
Confidence 34566655 566654 5432 2567777777654322 0111111 256777777777653 44443332
Q ss_pred ccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCC-CCCCCCCCCEEEeecCcCcceecchhHHhccccccEE
Q 020667 105 ILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVP-SSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYM 183 (323)
Q Consensus 105 ~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L 183 (323)
+..+++|++|+++++ + +..+++ .+.++++|++|+++++. ++.++ +..+..+++|++|
T Consensus 74 ~~~~~~L~~L~Ls~N--------~------------l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~-~~~f~~l~~L~~l 131 (192)
T d1w8aa_ 74 FEGASHIQELQLGEN--------K------------IKEISNKMFLGLHQLKTLNLYDNQ-ISCVM-PGSFEHLNSLTSL 131 (192)
T ss_dssp TTTCTTCCEEECCSC--------C------------CCEECSSSSTTCTTCCEEECCSSC-CCEEC-TTSSTTCTTCCEE
T ss_pred cccccccceeeeccc--------c------------ccccCHHHHhCCCcccccccCCcc-ccccC-HHHhcCCcccccc
Confidence 245677777777664 1 222222 34567777777777764 55553 3345667777777
Q ss_pred EEccCc
Q 020667 184 EIESCD 189 (323)
Q Consensus 184 ~l~~c~ 189 (323)
++++++
T Consensus 132 ~L~~N~ 137 (192)
T d1w8aa_ 132 NLASNP 137 (192)
T ss_dssp ECTTCC
T ss_pred cccccc
Confidence 777665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=4.2e-08 Score=72.34 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=34.5
Q ss_pred cEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccc
Q 020667 26 MHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGI 105 (323)
Q Consensus 26 ~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 105 (323)
|+|++++ ++++.+ +. ++.+++|++|+++++ .++ .++.. +..+++|+.|+++++ .++.++. +
T Consensus 1 R~L~Ls~-n~l~~l-~~--l~~l~~L~~L~ls~N-~l~--~lp~~-------~~~l~~L~~L~l~~N-~i~~l~~----~ 61 (124)
T d1dcea3 1 RVLHLAH-KDLTVL-CH--LEQLLLVTHLDLSHN-RLR--ALPPA-------LAALRCLEVLQASDN-ALENVDG----V 61 (124)
T ss_dssp SEEECTT-SCCSSC-CC--GGGGTTCCEEECCSS-CCC--CCCGG-------GGGCTTCCEEECCSS-CCCCCGG----G
T ss_pred CEEEcCC-CCCCCC-cc--cccCCCCCEEECCCC-ccC--cchhh-------hhhhhcccccccccc-cccccCc----c
Confidence 3455655 455543 33 455566666666544 233 11111 224555555555554 3443332 1
Q ss_pred cCCCCccEEEEcCC
Q 020667 106 LEFPSLKELWISGC 119 (323)
Q Consensus 106 ~~l~~L~~L~l~~c 119 (323)
..+++|+.|+++++
T Consensus 62 ~~l~~L~~L~l~~N 75 (124)
T d1dcea3 62 ANLPRLQELLLCNN 75 (124)
T ss_dssp TTCSSCCEEECCSS
T ss_pred ccccccCeEECCCC
Confidence 24455555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=5.5e-08 Score=71.69 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=72.2
Q ss_pred ccccccccccccccccccccCCcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCcccc
Q 020667 2 LYSINVERIWLSQVTVMSCGIQNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMF 81 (323)
Q Consensus 2 l~~~~l~~i~~~~p~~~~~~l~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l 81 (323)
|+.+++..+- .+. .+++|++|++++ +.++.+ |.. ++.+++|++|+++++ .++. ++ .+..+
T Consensus 5 Ls~n~l~~l~-----~l~-~l~~L~~L~ls~-N~l~~l-p~~-~~~l~~L~~L~l~~N-~i~~--l~--------~~~~l 64 (124)
T d1dcea3 5 LAHKDLTVLC-----HLE-QLLLVTHLDLSH-NRLRAL-PPA-LAALRCLEVLQASDN-ALEN--VD--------GVANL 64 (124)
T ss_dssp CTTSCCSSCC-----CGG-GGTTCCEEECCS-SCCCCC-CGG-GGGCTTCCEEECCSS-CCCC--CG--------GGTTC
T ss_pred cCCCCCCCCc-----ccc-cCCCCCEEECCC-CccCcc-hhh-hhhhhcccccccccc-cccc--cC--------ccccc
Confidence 4455565442 377 899999999998 789885 655 789999999999986 4442 22 23489
Q ss_pred CCcCEEecccccccccccccCccccCCCCccEEEEcCCc
Q 020667 82 PQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 82 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp 120 (323)
++|++|+++++ .+..++.... ...+++|+.|+++++|
T Consensus 65 ~~L~~L~l~~N-~i~~~~~~~~-l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 65 PRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNS 101 (124)
T ss_dssp SSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSG
T ss_pred cccCeEECCCC-ccCCCCCchh-hcCCCCCCEEECCCCc
Confidence 99999999987 5666553221 3578999999999875
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.54 E-value=6e-10 Score=89.71 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=6.4
Q ss_pred cCCcccEEeecCC
Q 020667 234 KFPSLERLVLDDC 246 (323)
Q Consensus 234 ~l~~L~~L~l~~c 246 (323)
.+++|++|+++++
T Consensus 138 ~l~~L~~L~L~~N 150 (198)
T d1m9la_ 138 ALDKLEDLLLAGN 150 (198)
T ss_dssp TTTTCSEEEECSS
T ss_pred CCCccceeecCCC
Confidence 3455555555444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.8e-07 Score=70.66 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccccccceecCCCcc
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSFCSGNCA 232 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 232 (323)
..+.++.++.. +... +..+..+++|++|++.+++.++.++. ..+..+++|+.|++++. +|+.++... +
T Consensus 9 ~~~~l~c~~~~-~~~~--p~~l~~l~~l~~L~l~~n~~l~~i~~-------~~f~~l~~L~~L~Ls~N-~l~~i~~~~-f 76 (156)
T d2ifga3 9 GSSGLRCTRDG-ALDS--LHHLPGAENLTELYIENQQHLQHLEL-------RDLRGLGELRNLTIVKS-GLRFVAPDA-F 76 (156)
T ss_dssp SSSCEECCSSC-CCTT--TTTSCSCSCCSEEECCSCSSCCEECG-------GGSCSCCCCSEEECCSS-CCCEECTTG-G
T ss_pred CCCeEEecCCC-CccC--cccccCccccCeeecCCCccccccCc-------hhhccccccCcceeecc-ccCCccccc-c
Confidence 34455555433 2222 34456677788888877777777762 33456788888888884 788876653 5
Q ss_pred ccCCcccEEeecCCCCCcccCCCCCCCCCcceeEccC
Q 020667 233 FKFPSLERLVLDDCPSMKIFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 233 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~L~~L~l~~ 269 (323)
..+++|++|++++ +.++.+|.+.....+|++|++.|
T Consensus 77 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~ 112 (156)
T d2ifga3 77 HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSG 112 (156)
T ss_dssp GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCS
T ss_pred cccccccceeccC-CCCcccChhhhccccccccccCC
Confidence 6678888888877 56777887766666788888833
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.48 E-value=7.7e-10 Score=89.06 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=88.6
Q ss_pred CCcccEEeeec-ccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccc
Q 020667 22 IQNLMHLTLRS-CMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCT 100 (323)
Q Consensus 22 l~~L~~L~L~~-c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 100 (323)
...++.+.+.+ .+.++.+ |.+ +..+++|++|+++++. ++.+ . .+..+++|+.|+++++ .++.++.
T Consensus 22 ~~~~~~~~l~~~~~~i~~l-~~s-l~~L~~L~~L~Ls~n~-I~~i--~--------~l~~l~~L~~L~Ls~N-~i~~i~~ 87 (198)
T d1m9la_ 22 ATEAEKVELHGMIPPIEKM-DAT-LSTLKACKHLALSTNN-IEKI--S--------SLSGMENLRILSLGRN-LIKKIEN 87 (198)
T ss_dssp CTTCSCEECCBCCTTCCCC-HHH-HHHTTTCCEEECSEEE-ESCC--C--------CHHHHTTCCEEECCEE-EECSCSS
T ss_pred ccccceeeeecccCchhhh-hhH-HhcccccceeECcccC-CCCc--c--------cccCCccccChhhccc-ccccccc
Confidence 34455556553 2234432 444 6778888888888653 3321 1 1336788888888877 4565553
Q ss_pred cCccccCCCCccEEEEcCCchhhhhccCCcceeeecCCCCccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccc
Q 020667 101 SNLGILEFPSLKELWISGCPKFMERYNRTTNILTERGCDHLVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRL 180 (323)
Q Consensus 101 ~~~~~~~l~~L~~L~l~~cp~~~~~l~~L~~L~~i~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L 180 (323)
.. ..+++|+.|++++|. +. .+ +.+..+++|++|++++|. ++++.....+..+++|
T Consensus 88 ~~---~~~~~L~~L~l~~N~--------i~------------~l-~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L 142 (198)
T d1m9la_ 88 LD---AVADTLEELWISYNQ--------IA------------SL-SGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKL 142 (198)
T ss_dssp HH---HHHHHCCEEECSEEE--------CC------------CH-HHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTC
T ss_pred cc---ccccccccccccccc--------cc------------cc-ccccccccccccccccch-hccccccccccCCCcc
Confidence 32 245678888877652 11 11 124456788888888774 4544323457788888
Q ss_pred cEEEEccCcccceeeeccCccc---ccccccccccCeeec
Q 020667 181 EYMEIESCDRITEIVLVDDVAA---KDEVITFRELKELKL 217 (323)
Q Consensus 181 ~~L~l~~c~~l~~i~~~~~~~~---~~~~~~~~~L~~L~l 217 (323)
+.|++++|+.....+ ...... ...+..+|+|+.|+-
T Consensus 143 ~~L~L~~N~l~~~~~-~~~~~~~~r~~vi~~lp~L~~LD~ 181 (198)
T d1m9la_ 143 EDLLLAGNPLYNDYK-ENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp SEEEECSSHHHHHHC-TTTTHHHHHHHHHHHCSSCCEESS
T ss_pred ceeecCCCccccCcc-cccchhhHHHHHHHHCCCcCEeCC
Confidence 888888876322221 100000 001346788888764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1e-06 Score=67.46 Aligned_cols=96 Identities=22% Similarity=0.183 Sum_probs=75.2
Q ss_pred ccccCCCCCCCCCCCEEEeecCcCcceecchhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeecccc
Q 020667 141 LVDLVPSSTSFQNLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNL 220 (323)
Q Consensus 141 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c 220 (323)
+.+.|..+..+++|++|++.+++.++.+. +..+.++++|+.|+++++. +..++ ...+..+++|++|+|++.
T Consensus 20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~-------~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 20 ALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVA-------PDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEEC-------TTGGGSCSCCCEEECCSS
T ss_pred CccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCcc-------cccccccccccceeccCC
Confidence 33455667778999999999888888874 3457889999999999875 77776 234567899999999994
Q ss_pred cccceecCCCccccCCcccEEeecCCCC
Q 020667 221 ESLTSFCSGNCAFKFPSLERLVLDDCPS 248 (323)
Q Consensus 221 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 248 (323)
+++.++.+. ....+|++|++++++.
T Consensus 91 -~l~~l~~~~--~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 91 -ALESLSWKT--VQGLSLQELVLSGNPL 115 (156)
T ss_dssp -CCSCCCSTT--TCSCCCCEEECCSSCC
T ss_pred -CCcccChhh--hccccccccccCCCcc
Confidence 899998765 3455799999998753
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.01 E-value=3.1e-07 Score=79.76 Aligned_cols=238 Identities=11% Similarity=0.054 Sum_probs=124.5
Q ss_pred ccccCCcccEEeeecccccceeccch---hHhcCCCccEEEEecCCCCceEE-eeccccccCCCccccCCcCEEeccccc
Q 020667 18 MSCGIQNLMHLTLRSCMNLRYLFSSS---IVSSFVRLQRIEIVECPVLKELI-VMDNQEERKNNNVMFPQLQYLKMFNLE 93 (323)
Q Consensus 18 ~~~~l~~L~~L~L~~c~~l~~~~p~~---~~~~l~~L~~L~ls~c~~l~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (323)
+. ...+|++|+|++ +.+....... .+...++|+.|+++++..-..-. .+.........+..+++|++|++++|.
T Consensus 27 L~-~~~~l~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 27 LL-EDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HH-HCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred Hh-hCCCCCEEECcC-CcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 44 688999999998 4453211111 14467899999998774321000 000011122233467899999999874
Q ss_pred cccc-----ccccCccccCCCCccEEEEcCCchhh----------h---------hccCCcceeeecCCCC----ccccC
Q 020667 94 NFTS-----FCTSNLGILEFPSLKELWISGCPKFM----------E---------RYNRTTNILTERGCDH----LVDLV 145 (323)
Q Consensus 94 ~l~~-----~~~~~~~~~~l~~L~~L~l~~cp~~~----------~---------~l~~L~~L~~i~~~~~----l~~l~ 145 (323)
++. +... ....++|++|++++|.-.. . ..+.++.+ .+.++.. ...+.
T Consensus 105 -i~~~~~~~l~~~---l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l-~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 105 -FGPTAQEPLIDF---LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI-ICGRNRLENGSMKEWA 179 (344)
T ss_dssp -CCTTTHHHHHHH---HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE-ECCSSCCTGGGHHHHH
T ss_pred -cccccccchhhh---hcccccchheecccccccccccccccccccccccccccccCccccee-eccccccccccccccc
Confidence 332 1111 1257899999999984110 0 01233333 1222211 11122
Q ss_pred CCCCCCCCCCEEEeecCcCcceec----chhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccc
Q 020667 146 PSSTSFQNLTNLVVSCCKGLKIVL----TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLE 221 (323)
Q Consensus 146 ~~~~~l~~L~~L~l~~c~~l~~l~----~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~ 221 (323)
..+...++|++|++++|. +++.. ....+..+++|+.|++++|. ++.... ......+..+++|++|++++|
T Consensus 180 ~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~---~~L~~~l~~~~~L~~L~Ls~n- 253 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGS---SALAIALKSWPNLRELGLNDC- 253 (344)
T ss_dssp HHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHH---HHHHHHGGGCTTCCEEECTTC-
T ss_pred chhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-cccccc---ccccccccccccchhhhhhcC-
Confidence 223455678888888775 33211 01234567788888888765 221100 000112346778888888887
Q ss_pred ccceecCCC-----ccccCCcccEEeecCCCCCc-----ccCCCCC-CCCCcceeEccC
Q 020667 222 SLTSFCSGN-----CAFKFPSLERLVLDDCPSMK-----IFSEGNS-STPKLHEVQWPG 269 (323)
Q Consensus 222 ~L~~l~~~~-----~~~~l~~L~~L~l~~c~~l~-----~lp~~~~-~~~~L~~L~l~~ 269 (323)
.+....... .....+.|++|++++|. ++ .+...+. .+++|++|++.|
T Consensus 254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~ 311 (344)
T d2ca6a1 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG 311 (344)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCC
Confidence 344321110 00124678888887764 43 2333232 466788888833
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.72 E-value=5.9e-06 Score=71.36 Aligned_cols=214 Identities=12% Similarity=0.039 Sum_probs=121.0
Q ss_pred cCCcccEEeeecccc--cceeccch------hHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccc
Q 020667 21 GIQNLMHLTLRSCMN--LRYLFSSS------IVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNL 92 (323)
Q Consensus 21 ~l~~L~~L~L~~c~~--l~~~~p~~------~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (323)
..++|+.|+++++.. .....|.. .+..+++|+.|++++|..-. .........+...++|++|++++|
T Consensus 57 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~L~~L~l~~n 131 (344)
T d2ca6a1 57 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-----TAQEPLIDFLSKHTPLEHLYLHNN 131 (344)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-----TTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc-----ccccchhhhhcccccchheecccc
Confidence 678999999987532 11111211 13467899999999874211 001111122335788999999887
Q ss_pred ccccccc-----ccCc------cccCCCCccEEEEcCCc---h-------hhhhccCCcceeeecCCCCcc-----ccCC
Q 020667 93 ENFTSFC-----TSNL------GILEFPSLKELWISGCP---K-------FMERYNRTTNILTERGCDHLV-----DLVP 146 (323)
Q Consensus 93 ~~l~~~~-----~~~~------~~~~l~~L~~L~l~~cp---~-------~~~~l~~L~~L~~i~~~~~l~-----~l~~ 146 (323)
. +.... .... .....+.|+.+.+.++. . .+...+.++.| .+.+|.--. .+..
T Consensus 132 ~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L-~L~~n~i~~~g~~~~l~~ 209 (344)
T d2ca6a1 132 G-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV-KMVQNGIRPEGIEHLLLE 209 (344)
T ss_dssp C-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE-ECCSSCCCHHHHHHHHHT
T ss_pred c-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc-ccccccccccccccchhh
Confidence 4 22110 0000 01256788999988772 1 12234566666 455554221 1233
Q ss_pred CCCCCCCCCEEEeecCcCcceec---chhHHhccccccEEEEccCcccceeeeccCccccccc--ccccccCeeeccccc
Q 020667 147 SSTSFQNLTNLVVSCCKGLKIVL---TFSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEV--ITFRELKELKLLNLE 221 (323)
Q Consensus 147 ~~~~l~~L~~L~l~~c~~l~~l~---~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~--~~~~~L~~L~l~~c~ 221 (323)
.+...++|+.|++++|. ++... ....+...++|++|++++|. +++..... ....+ ...+.|++|+++++
T Consensus 210 ~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~---l~~~l~~~~~~~L~~L~ls~N- 283 (344)
T d2ca6a1 210 GLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA---VVDAFSKLENIGLQTLRLQYN- 283 (344)
T ss_dssp TGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH---HHHHHHTCSSCCCCEEECCSS-
T ss_pred hhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhhHH---HHHHhhhccCCCCCEEECCCC-
Confidence 45678899999999885 43321 12346778999999999986 33211000 00011 23578999999996
Q ss_pred ccceecCCC---cc-ccCCcccEEeecCCC
Q 020667 222 SLTSFCSGN---CA-FKFPSLERLVLDDCP 247 (323)
Q Consensus 222 ~L~~l~~~~---~~-~~l~~L~~L~l~~c~ 247 (323)
+++.-.... .. .++++|++|+++++.
T Consensus 284 ~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 454321100 11 257899999998754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00033 Score=61.65 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=44.9
Q ss_pred CcccEEeeecccccceeccchhHhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEeccccccccc-----
Q 020667 23 QNLMHLTLRSCMNLRYLFSSSIVSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTS----- 97 (323)
Q Consensus 23 ~~L~~L~L~~c~~l~~~~p~~~~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----- 97 (323)
++|++|+|++ +++++..=..++..++++++|+|++|. ++. .........+..+++|++|+++++. ++.
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~----~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~ 74 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTE----ARCKDISSALRVNPALAELNLRSNE-LGDVGVHC 74 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCH----HHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH
T ss_pred CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCH----HHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHH
Confidence 3577777764 666653112234567777777777773 320 0001111222356777777777653 322
Q ss_pred ccccCccccCCCCccEEEEcCC
Q 020667 98 FCTSNLGILEFPSLKELWISGC 119 (323)
Q Consensus 98 ~~~~~~~~~~l~~L~~L~l~~c 119 (323)
+..... ...++|++|++++|
T Consensus 75 l~~~l~--~~~~~L~~L~L~~n 94 (460)
T d1z7xw1 75 VLQGLQ--TPSCKIQKLSLQNC 94 (460)
T ss_dssp HHHTTC--STTCCCCEEECTTS
T ss_pred HHHHHh--cCCCCCCEEECCCC
Confidence 111110 12346777777776
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00037 Score=61.30 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=15.9
Q ss_pred CCCEEEeecCcCcceecchhHHhccccccEEEEccC
Q 020667 153 NLTNLVVSCCKGLKIVLTFSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 153 ~L~~L~l~~c~~l~~l~~~~~l~~l~~L~~L~l~~c 188 (323)
+|+.|+|+ |..+++..+...+..+++++.|++.+|
T Consensus 3 ~l~~ld~~-~~~i~~~~~~~l~~~l~~l~~L~L~~~ 37 (460)
T d1z7xw1 3 DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDC 37 (460)
T ss_dssp EEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred CCCEEEee-CCcCChHHHHHHHHhCCCCCEEEeCCC
Confidence 34555553 223443332333444555555555555
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.00053 Score=51.99 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=37.2
Q ss_pred HhcCCCccEEEEecCCCCceEEeeccccccCCCccccCCcCEEecccccccccccccCccccCCCCccEEEEcCCc
Q 020667 45 VSSFVRLQRIEIVECPVLKELIVMDNQEERKNNNVMFPQLQYLKMFNLENFTSFCTSNLGILEFPSLKELWISGCP 120 (323)
Q Consensus 45 ~~~l~~L~~L~ls~c~~l~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~cp 120 (323)
...+++|++|+++++. ++.+ .. .+..+..+++|+.|+++++ .++.++... .....+|+.|++.++|
T Consensus 61 ~~~~~~L~~L~Ls~N~-i~~l--~~----~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~--~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 61 EENIPELLSLNLSNNR-LYRL--DD----MSSIVQKAPNLKILNLSGN-ELKSERELD--KIKGLKLEELWLDGNS 126 (162)
T ss_dssp HHHCTTCCCCCCCSSC-CCCC--SG----GGTHHHHSTTCCCCCCTTS-CCCCGGGHH--HHTTCCCSSCCCTTST
T ss_pred HHhCCCCCEeeCCCcc-ccCC--ch----hHHHHhhCCcccccccccC-ccccchhhh--hhhccccceeecCCCC
Confidence 3567788888887763 3311 10 0111225777888888776 455554321 1234567778887774
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0025 Score=48.09 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=18.0
Q ss_pred CCCCCEEEeecCcCcceecc-hhHHhccccccEEEEccC
Q 020667 151 FQNLTNLVVSCCKGLKIVLT-FSIAKTLVRLEYMEIESC 188 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~-~~~l~~l~~L~~L~l~~c 188 (323)
+++|++|++++|. ++++.. ...+..+++|+.|+++++
T Consensus 64 ~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N 101 (162)
T d1koha1 64 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN 101 (162)
T ss_dssp CTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred CCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccC
Confidence 4555556665553 333321 223445555666655554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.86 E-value=0.011 Score=44.58 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.7
Q ss_pred CCCCCEEEeecC
Q 020667 151 FQNLTNLVVSCC 162 (323)
Q Consensus 151 l~~L~~L~l~~c 162 (323)
-++|++|+++++
T Consensus 99 n~sL~~L~l~~n 110 (167)
T d1pgva_ 99 TQSIVEFKADNQ 110 (167)
T ss_dssp TCCCSEEECCCC
T ss_pred CCcCCEEECCCC
Confidence 345666666544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.95 E-value=0.012 Score=44.08 Aligned_cols=14 Identities=7% Similarity=-0.147 Sum_probs=7.8
Q ss_pred HhccccccEEEEcc
Q 020667 174 AKTLVRLEYMEIES 187 (323)
Q Consensus 174 l~~l~~L~~L~l~~ 187 (323)
+...++|+.|++..
T Consensus 128 L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 128 LEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHCSSCCEEECCC
T ss_pred HHhCCCcCEEeCcC
Confidence 34555666666544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.32 E-value=0.069 Score=39.85 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=17.6
Q ss_pred CCCCCEEEeecCcCcceecchh---HHhccccccEEEEccC
Q 020667 151 FQNLTNLVVSCCKGLKIVLTFS---IAKTLVRLEYMEIESC 188 (323)
Q Consensus 151 l~~L~~L~l~~c~~l~~l~~~~---~l~~l~~L~~L~l~~c 188 (323)
.+.|++|++++|. +++-.... .+..-++|++|+++++
T Consensus 71 n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 71 SPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp CSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCC
Confidence 3456666666663 33321111 2233345666666544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=88.52 E-value=0.045 Score=40.76 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=65.5
Q ss_pred CCCCCCEEEeecCcCcceecc---hhHHhccccccEEEEccCcccceeeeccCcccccccccccccCeeeccccccccee
Q 020667 150 SFQNLTNLVVSCCKGLKIVLT---FSIAKTLVRLEYMEIESCDRITEIVLVDDVAAKDEVITFRELKELKLLNLESLTSF 226 (323)
Q Consensus 150 ~l~~L~~L~l~~c~~l~~l~~---~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 226 (323)
+.++|++|+++++..+++-.. ...+...+.|++|++++|. ++.-... .....+...++++.+++.+|. +..-
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~---~L~~~l~~~~~l~~l~l~~~~-~~~~ 89 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAF---ALAEMLKVNNTLKSLNVESNF-ISGS 89 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHH---HHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHH---HHHHHHhhcccchhhhhcccc-ccch
Confidence 457888999987665654321 1234567889999999874 3221100 001122456788888888763 3221
Q ss_pred cCC---CccccCCcccEEeecCCC-CCc-----ccCCCCCCCCCcceeEccC
Q 020667 227 CSG---NCAFKFPSLERLVLDDCP-SMK-----IFSEGNSSTPKLHEVQWPG 269 (323)
Q Consensus 227 ~~~---~~~~~l~~L~~L~l~~c~-~l~-----~lp~~~~~~~~L~~L~l~~ 269 (323)
... ......++|+.+++..|. .++ .+...+..+++|++|++..
T Consensus 90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 100 122456788887776543 343 2444445678888888843
|