Citrus Sinensis ID: 020669


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MRLVTHHRRRQMVTSTTLVPSSRRTRSLQPTLTKLSITSTAPTPDQSLVPVSYPGRPQPQPAYGFQPGMGRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGTNRSMNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMAMDARRRYGFEI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mrlvthhrrrqmvtsttlvpssrrtrslqptltklsitstaptpdqslvpvsypgrpqpqpaygfqpgmgrpepygsgrpeseyasgyakrpdsqeygsgygkrpeseeygsgygrkpdsevhgsgygrrpesgesgfggrteseyggsaygrkpeyesgygqkpeyesgyggkpgyesgygskpefesgygrkpeyesgygskpefesgygrkpeyesgygtnrsmnlgmgvsqsmnpgmvasrstsrgmggnlnlntkAGTAVVRSMENlrgsrvmgglmtkkgirspvVMVMRDVVMMMNIAAGLMSMAMDARRRYGFEI
mrlvthhrrrqmvtsttlvpssrrtrslqptltklsitstaptpdqSLVPVSYPGRPQPQPAYGFQPGMGRPEPYGSGRPESEYAsgyakrpdsqeygsgygkrpeseeygsgygrkpdsevhgsgygrrpesgesgfggrteseyggsaygrkpeYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYgrkpeyesgygskpefesgygrKPEYESGYGTNRSMNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMEnlrgsrvmgglmtkkgirspvVMVMRDVVMMMNIAAGLMSMAMDARRRYGFEI
MRLVTHHRRRQMVTSTTLVPSSRRTRSLQPTLTKLSITSTAPTPDQSLVPVSYPGRPQPQPAYGFQPGMGRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGTNRSMNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPvvmvmrdvvmmmNIAAGLMSMAMDARRRYGFEI
***********************************************************************************************************************************************************************************************************************************************************************************RVMGGLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMA***********
****************************************************************************************************************************************************************************************************************************************************************************************LMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMAMDARRRYG***
****************************QPTLTKLSITSTAPTPDQSLVPVSYPGRPQPQPAYGFQPGMGRPEPYG**************************************GRKP*********************GRTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGTNRSMNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMAMDARRRYGFEI
*RLVTHHRRRQMVTSTTLVP******************************************************************************************************************************************************************************************************************************************LNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMAMDARRRYGFEI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
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MRLVTHHRRRQMVTSTTLVPSSRRTRSLQPTLTKLSITSTAPTPDQSLVPVSYPGRPQPQPAYGFQPGMGRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGTNRSMNLGMGVSQSMNPGMVASRSTSRGMGGNLNLNTKAGTAVVRSMENLRGSRVMGGLMTKKGIRSPVVMVMRDVVMMMNIAAGLMSMAMDARRRYGFEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q27409 751 Adhesive plaque matrix pr N/A no 0.269 0.115 0.340 9e-07
Q25460 875 Adhesive plaque matrix pr N/A no 0.340 0.125 0.306 5e-06
A9KNW4 1131 Translation initiation fa yes no 0.476 0.136 0.333 3e-05
Q9FKA5381 Uncharacterized protein A no no 0.421 0.356 0.440 0.0002
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein OS=Mytilus galloprovincialis GN=FP1 PE=2 SV=1 Back     alignment and function desciption
 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 37/91 (40%)

Query: 151 YGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESG 210
           Y  KP Y + Y  KP Y S Y  KP Y   Y +KP +   Y  KP Y S Y +KP +   
Sbjct: 269 YKAKPSYPTSYRAKPSYPSTYKAKPSYPPTYKAKPSYPPTYKAKPTYPSTYKAKPSYPPT 328

Query: 211 YGRKPEYESGYGTNRSMNLGMGVSQSMNPGM 241
           Y  KP Y   Y    S         +  P  
Sbjct: 329 YKAKPSYPPTYKAKPSYPPSYKPKTTYPPSY 359




Provides adhesiveness to the mussel's foot. Mussels produce one of the strongest water insoluble glues. The mussel's adhesive is a bundle of threads, called a byssus, formed by a fibrous collagenous core coated with adhesive proteins.
Mytilus galloprovincialis (taxid: 29158)
>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1 PE=1 SV=1 Back     alignment and function description
>sp|A9KNW4|IF2_CLOPH Translation initiation factor IF-2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=infB PE=3 SV=1 Back     alignment and function description
>sp|Q9FKA5|Y5957_ARATH Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
225452887383 PREDICTED: uncharacterized protein At5g3 0.374 0.315 0.524 2e-18
224116092415 predicted protein [Populus trichocarpa] 0.520 0.404 0.517 3e-18
357124711384 PREDICTED: uncharacterized protein At5g3 0.476 0.401 0.417 1e-13
224113533219 predicted protein [Populus trichocarpa] 0.334 0.493 0.541 7e-11
255102270 1217 putative serine-aspartate-rich surface a 0.464 0.123 0.325 9e-11
356572926363 PREDICTED: uncharacterized protein At5g3 0.467 0.415 0.448 1e-10
326511861368 predicted protein [Hordeum vulgare subsp 0.408 0.358 0.418 3e-10
224141425337 predicted protein [Populus trichocarpa] 0.455 0.436 0.488 6e-10
356550983374 PREDICTED: uncharacterized protein At5g3 0.421 0.363 0.512 1e-09
66361414 437 hypothetical protein [Cryptosporidium pa 0.294 0.217 0.298 4e-09
>gi|225452887|ref|XP_002283932.1| PREDICTED: uncharacterized protein At5g39570 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 102/166 (61%), Gaps = 45/166 (27%)

Query: 81  ESEYASGYAKRPD----SQEYGSGYGKRPESE----EYGSGYGRKPDSEV----HGSGYG 128
           E EY SG+ ++PD    S EYGSGYG++PE E    EYGSGYGRKP+ E     +GSGYG
Sbjct: 123 EGEYGSGHGRKPDYEEPSSEYGSGYGRKPECEQPSSEYGSGYGRKPEYEQPSSEYGSGYG 182

Query: 129 RRPESGESGFGGRTESEYGGSAYGRKPEYE-------SGYGQKPEYE---SGYGGKPGYE 178
           R+PE  +        SEY GS YGRKPEYE       SGYG+KPEYE   S YG      
Sbjct: 183 RKPEYEQPS------SEY-GSGYGRKPEYEQPSTEYGSGYGRKPEYEQPSSEYG------ 229

Query: 179 SGYGSKPEFE-------SGYGRKPEYESGYGSKPEFESGYGRKPEY 217
           SGYG +PEFE       SGYGR+PEYE+      E+ SGYGRKP +
Sbjct: 230 SGYGRRPEFEQPSSEYGSGYGRRPEYEA---PSSEYGSGYGRKPSF 272




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116092|ref|XP_002332006.1| predicted protein [Populus trichocarpa] gi|222832515|gb|EEE70992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357124711|ref|XP_003564041.1| PREDICTED: uncharacterized protein At5g39570-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224113533|ref|XP_002332567.1| predicted protein [Populus trichocarpa] gi|222832729|gb|EEE71206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255102270|ref|ZP_05331247.1| putative serine-aspartate-rich surface anchored fibrinogen-binding protein [Clostridium difficile QCD-63q42] Back     alignment and taxonomy information
>gi|356572926|ref|XP_003554616.1| PREDICTED: uncharacterized protein At5g39570-like [Glycine max] Back     alignment and taxonomy information
>gi|326511861|dbj|BAJ92075.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|224141425|ref|XP_002324073.1| predicted protein [Populus trichocarpa] gi|222867075|gb|EEF04206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550983|ref|XP_003543859.1| PREDICTED: uncharacterized protein At5g39570-like [Glycine max] Back     alignment and taxonomy information
>gi|66361414|ref|XP_627308.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|46228859|gb|EAK89729.1| uncharacterized glycine-rich low complexity protein [Cryptosporidium parvum Iowa II] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
MGI|MGI:1330280159 Krtap6-2 "keratin associated p 0.359 0.729 0.45 1.2e-13
UNIPROTKB|F1PBJ4 517 FUS "Uncharacterized protein" 0.616 0.384 0.323 1.8e-13
UNIPROTKB|G8ENL4 517 FUS "Uncharacterized protein" 0.551 0.344 0.336 9.8e-13
UNIPROTKB|Q28009 513 FUS "RNA-binding protein FUS" 0.631 0.397 0.322 1.7e-12
UNIPROTKB|J9NYY3 2801 FLG2 "Uncharacterized protein" 0.541 0.062 0.333 2.5e-12
MGI|MGI:1353633 518 Fus "fused in sarcoma" [Mus mu 0.634 0.395 0.332 2.9e-12
RGD|1308864 518 Fus "fused in sarcoma" [Rattus 0.634 0.395 0.332 3.9e-12
TAIR|locus:2146703354 AT5G04170 [Arabidopsis thalian 0.489 0.446 0.338 5.8e-12
ZFIN|ZDB-GENE-030131-2317 624 ewsr1a "Ewing sarcoma breakpoi 0.501 0.259 0.319 1.2e-11
UNIPROTKB|Q86YZ3 2850 HRNR "Hornerin" [Homo sapiens 0.523 0.059 0.340 5e-11
MGI|MGI:1330280 Krtap6-2 "keratin associated protein 6-2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 180 (68.4 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 63/140 (45%), Positives = 69/140 (49%)

Query:    97 YGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGE-SGFGGRTESEYG---GSAYG 152
             YG GYG       YGSGYG    S  +G GYG     G  SG+G  + S YG   GS YG
Sbjct:    12 YGCGYGSG-----YGSGYGCGSGSG-YGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYG 65

Query:   153 RKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYG 212
                 Y SGYG    Y SGYG   GY SGYG    + SGYG    Y SGYG    + SGYG
Sbjct:    66 CG--YGSGYGCG--YGSGYGC--GYGSGYGCG--YGSGYGCG--YGSGYGCG--YGSGYG 113

Query:   213 RKPEYESGYGTNRSMNLGMG 232
                 Y SGYG+      G G
Sbjct:   114 CG--YGSGYGSGYGSGYGSG 131


GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0005882 "intermediate filament" evidence=IEA
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1PBJ4 FUS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G8ENL4 FUS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q28009 FUS "RNA-binding protein FUS" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYY3 FLG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1353633 Fus "fused in sarcoma" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308864 Fus "fused in sarcoma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2146703 AT5G04170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2317 ewsr1a "Ewing sarcoma breakpoint region 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q86YZ3 HRNR "Hornerin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00021008001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (383 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00