Citrus Sinensis ID: 020673

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHEEEEEEEEEccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHHEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHEEEEccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEEcccccccccccccccccEEEEEcccccccEccccccccEEEEEEccccccEEEEccccccHHHHHHHHHHHHHccccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MREPSMMVRETAAEQLEErqsdwayskpVVVLDIIWNLAFVAVAFSVMVLsqnerpnmplRLWIVGYAIQCVLHMVCVCVEYkrrsrrrvsafggaeegnlnsgttrgdsgeYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSaggqalardspLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVadqegaskeDIERLSKFKFRrmvdteklsddgqgsqggimtecgtetpnehvlsnedaecciclsayddgvelrelpcghhfhcacvdkwlyinatcplckynilksssnqdreev
Flexible Loop (DISEMBL)
MREPSMMVRETAAEQLeerqsdwaySKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRvsafggaeegnlnsgttrgdsGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAvadqegaskedIERLSkfkfrrmvdteklsddgqgsqgGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNilksssnqdreev
Low Complexity Region (SEG)
MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGfdvffvvfcvALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV
Disordered region (IsUnstruct)
*********************DWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRR*********************************************LESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVAD*************************************************VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL***********
Disordered Region (DISOPRED)
**********************WAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYK*****************************************TSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAV************RLSKFKFRRM*******************************SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC****************
Disordered Region (DISEMBL)
*******************QSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEK*********GGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS*********
Disordered Region (DISPRO)
*******************QSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSR***********************************EGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMV*************GGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q9LN71	408	E3 ubiquitin-protein liga	yes	no	0.987	0.781	0.712	1e-125
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.950	0.787	0.721	1e-123
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.990	0.839	0.702	1e-118
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.950	0.855	0.510	3e-84
Q5SSZ7	913	E3 ubiquitin-protein liga	yes	no	0.427	0.151	0.331	2e-14
Q9ULT6	936	E3 ubiquitin-protein liga	yes	no	0.405	0.139	0.333	9e-13
Q4KLR8	784	E3 ubiquitin-protein liga	N/A	no	0.393	0.161	0.335	3e-12
E9QAU8	347	RING finger protein 165 O	no	no	0.250	0.233	0.359	1e-11
Q6ZSG1	346	RING finger protein 165 O	no	no	0.250	0.234	0.359	2e-11
Q9WTV7	600	E3 ubiquitin-protein liga	no	no	0.148	0.08	0.458	3e-11

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/341 (71%), Positives = 281/341 (82%), Gaps = 22/341 (6%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+S+ E P MPL
Sbjct: 72  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPL 131

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGA-----------------EEGNLNS 103
           R+W++GYA+QCVLHMVCVCVEY+RR+RRR +                      EE  L  
Sbjct: 132 RVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEAL-- 189

Query: 104 GTTRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPL 163
           G+ R    + +SL + L+ E +SVAKHLESANTMFSFIWWIIGFYWVSAGGQ LA++SP 
Sbjct: 190 GSRRNSGVQDLSLGH-LDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPR 248

Query: 164 LYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSK 223
           +YWL I+FLGFDVFFVVFCVALAC+IGIAVCCCLPCIIA+LYAVADQEGASKEDIE+L+K
Sbjct: 249 IYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTK 308

Query: 224 FKFRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRE 282
           FKFR++ D  K  +D+ QG+  GIMTECGT++P EH L  EDAECCICLSAY+DG ELRE
Sbjct: 309 FKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRE 368

Query: 283 LPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
           LPCGHHFHC+CVDKWLYINATCPLCKYNILK SSN DREEV
Sbjct: 369 LPCGHHFHCSCVDKWLYINATCPLCKYNILK-SSNLDREEV 408

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/320 (72%), Positives = 267/320 (83%), Gaps = 13/320 (4%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+  +V++LS++E+PNMPL
Sbjct: 81  MREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPL 140

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
           R+W+VGY IQC LHM CVCVEY+RR RRR    GG       SG T   S +YVSLA QL
Sbjct: 141 RVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGG------SGLTNSSSQQYVSLA-QL 193

Query: 121 EEEG--TSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFF 178
           E+ G  ++ AKHLESANTMFSFIWWIIGFYWVSAGGQ L+ DSP LYWLCIIFLGFDVFF
Sbjct: 194 EDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFF 253

Query: 179 VVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDD 238
           VVFCVALAC+IG+AVCCCLPCIIAILYAVADQEGASK DI+++ KF+F +  + EKLS  
Sbjct: 254 VVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS-- 311

Query: 239 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 298
             G   GIMTECGT++P E  LS EDAECCICL  Y+DGVELRELPC HHFHC C+DKWL
Sbjct: 312 --GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWL 369

Query: 299 YINATCPLCKYNILKSSSNQ 318
           +IN+ CPLCK+NILK+++N+
Sbjct: 370 HINSRCPLCKFNILKNANNE 389

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/339 (70%), Positives = 273/339 (80%), Gaps = 19/339 (5%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL
Sbjct: 46  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPL 105

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGA-------------EEGNLNSGTTR 107
           R+WI+GY +QC++HMVCVCVEY+RR+ RR                    EE  L  G +R
Sbjct: 106 RVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGL--GLSR 163

Query: 108 GDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWL 167
                Y+ L  QLE E  S AKHLESANTM SFIWW+IGFYWVS+GGQ LA+ SP LYWL
Sbjct: 164 NSDERYLELG-QLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWL 222

Query: 168 CIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFR 227
           CI+FLGFDVFFVVFCVALAC+IGIAVCCCLPCIIA+LYAVA+QEGASKEDI++L+KFKFR
Sbjct: 223 CIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFR 282

Query: 228 RMVDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELP 284
           ++ DT K + D   GQG  GG+MTECGT++P EH L +EDAECCICLSAY+D  ELRELP
Sbjct: 283 KVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELP 342

Query: 285 CGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
           CGHHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV
Sbjct: 343 CGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  312 bits (799), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/319 (51%), Positives = 201/319 (63%), Gaps = 12/319 (3%)

Query: 2   REPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLR 61
           R PSM+VRETAA  LEER+ DW YSKPVV  DI+WN A V  +  ++V +  ERPN P+R
Sbjct: 50  RAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIR 109

Query: 62  LWIVGYAIQCVLHMVCVCVEYKRR-SRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
           +WI  Y +QC+ H+V V  EY RR S RR       +  + N         EY    +  
Sbjct: 110 VWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNI--------EYDYEQDSD 161

Query: 121 EEEGT-SVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFV 179
           +   T S  K  ES NT+ SFIWWIIGFYWV  GG  L  ++P LYWL +IFL  DVFF 
Sbjct: 162 DNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFA 221

Query: 180 VFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDG 239
           VFCV LAC++GIA+CCCLPCIIA+LYAVA  EG S+ ++  L  +KF+     EK +  G
Sbjct: 222 VFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEK-NITG 280

Query: 240 QGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY 299
            G    I    G     E  L  EDA+CCICLS+Y+DG EL  LPC HHFH  C+ KWL 
Sbjct: 281 PGKMVPIPIN-GLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLK 339

Query: 300 INATCPLCKYNILKSSSNQ 318
           + ATCPLCKYNILK +++Q
Sbjct: 340 MRATCPLCKYNILKGTTDQ 358

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 25/163 (15%)

Query: 155 QALARDSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGAS 214
           Q L    P  Y+   IFL    FFVV  V+L C+I             +L  +  ++  S
Sbjct: 203 QHLPPRQPTEYFDMGIFL---AFFVV--VSLVCLI-------------LLVKIKLKQRRS 244

Query: 215 KEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAY 274
           +  + RL+     +M +T K +   +G + G    CG     + + S   ++C ICL  Y
Sbjct: 245 QNSMNRLAVQALEKM-ETRKFNSKSKGRREG---SCGAL---DTLSSGSTSDCAICLEKY 297

Query: 275 DDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317
            DG ELR +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct: 298 IDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 340

Mus musculus (taxid: 10090)

>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 25/156 (16%)

Query: 162 PLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERL 221
           P  Y+   IFL    FFVV  V+L C+I             +L  +  ++  S+  + RL
Sbjct: 213 PTEYFDMGIFL---AFFVV--VSLVCLI-------------LLVKIKLKQRRSQNSMNRL 254

Query: 222 SKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELR 281
           +     +M +T K +   +G + G    CG       + S+  ++C ICL  Y DG ELR
Sbjct: 255 AVQALEKM-ETRKFNSKSKGRREG---SCGALD---TLSSSSTSDCAICLEKYIDGEELR 307

Query: 282 ELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317
            +PC H FH  CVD WL  + TCP C++NI++   N
Sbjct: 308 VIPCTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGN 343

Homo sapiens (taxid: 9606)

>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 25/152 (16%)

Query: 162 PLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERL 221
           P  Y+   IFL    FFVV          +++ C +  I   L     Q   ++  ++ L
Sbjct: 122 PTEYFDMGIFL---AFFVV----------VSLVCLILLIKIKLKQRRSQNSMNRMAVQAL 168

Query: 222 SKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELR 281
            K + R+     K+S   +GS GG+ T          + S+  ++C ICL  Y DG ELR
Sbjct: 169 EKMETRKFKAKGKVSR--EGSCGGLDT----------LSSSSISDCAICLEKYIDGEELR 216

Query: 282 ELPCGHHFHCACVDKWLYINATCPLCKYNILK 313
            +PC H FH  CVD WL  N TCP C++NI++
Sbjct: 217 VIPCTHRFHKRCVDPWLLQNHTCPHCRHNIIE 248

E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 22/103 (21%)

Query: 212 GASKEDIERLS---KFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECC 268
           GA +  IER +   K+K RR  D++   D+G+ S                   + D +C 
Sbjct: 256 GAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEES-------------------DTDEKCT 296

Query: 269 ICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           ICLS  +DG ++R LPC H FH  CVD+WL ++  CP+C+ +I
Sbjct: 297 ICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339

Mus musculus (taxid: 10090)

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 22/103 (21%)

Query: 212 GASKEDIERLS---KFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECC 268
           GA +  IER +   K+K RR  D +   D+G+ S                   + D +C 
Sbjct: 255 GAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEES-------------------DTDEKCT 295

Query: 269 ICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           ICLS  +DG ++R LPC H FH  CVD+WL ++  CP+C+ +I
Sbjct: 296 ICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338

Homo sapiens (taxid: 9606)

>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 35/48 (72%)

Query: 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314
           C +C++ Y +G +LR+LPC H +H  C+D+WL  N+TCP+C+  +L S
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSS 593

E3 ubiquitin-protein ligase. Acts as a negative coregulator for LIM homeodomain transcription factors by mediating the ubiquitination and subsequent degradation of LIM cofactors LDB1 and LDB2 and by mediating the recruitment the SIN3a/histone deacetylase corepressor complex. Ubiquitination and degradation of LIM cofactors LDB1 and LDB2 allows DNA-bound LIM homeodomain transcription factors to interact with other protein partners such as RLIM. Plays a role in telomere length-mediated growth suppression by mediating the ubiquitination and degradation of TERF1. Acts as an activator of random inactivation of X chromosome in the embryo, a stochastic process in which one X chromosome is inactivated to minimize sex-related dosage differences of X-encoded genes in somatic cells of female placental mammals.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
255537347	383	cleavage and polyadenylation specificity	0.987	0.832	0.815	1e-141
356565289	379	PREDICTED: E3 ubiquitin-protein ligase A	0.978	0.833	0.741	1e-140
449460475	383	PREDICTED: E3 ubiquitin-protein ligase A	0.993	0.838	0.773	1e-139
356514046	380	PREDICTED: E3 ubiquitin-protein ligase A	0.987	0.839	0.750	1e-137
356539808	387	PREDICTED: E3 ubiquitin-protein ligase A	0.996	0.832	0.744	1e-130
359474241	383	PREDICTED: E3 ubiquitin-protein ligase A	0.987	0.832	0.787	1e-129
357481703	387	E3 ubiquitin-protein ligase [Medicago tr	0.993	0.829	0.756	1e-129
356497216	385	PREDICTED: E3 ubiquitin-protein ligase A	0.987	0.828	0.761	1e-128
359474243	392	PREDICTED: E3 ubiquitin-protein ligase A	0.987	0.813	0.766	1e-127
225453718	382	PREDICTED: E3 ubiquitin-protein ligase A	0.975	0.824	0.704	1e-127

>gi|255537347|ref|XP_002509740.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223549639|gb|EEF51127.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/325 (81%), Positives = 293/325 (90%), Gaps = 6/325 (1%)

Query: 3   EPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRL 62
           EPSM+VRETAAEQLEERQSDWAYSKPVV+LDI+WN AFVAVA  V+++S+ E P+MPLRL
Sbjct: 61  EPSMLVRETAAEQLEERQSDWAYSKPVVILDILWNFAFVAVAIGVLIMSRKEDPSMPLRL 120

Query: 63  WIVGYAIQCVLHMVCVCVEYKRRSRRRVS-AFGGAEEGNLNSGTTRGDSGEYVSLANQLE 121
           WIVGY +QCVLHMVCVCVEY+RR RRR    FG   +GNL+SG+ RGDSGEYV+LA   +
Sbjct: 121 WIVGYGLQCVLHMVCVCVEYRRRRRRRRRVGFGIGSDGNLSSGS-RGDSGEYVTLAQLED 179

Query: 122 EEGTS-VAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFFVV 180
            +GTS VAKHLESANTMFSFIWWIIGFYWVSAGGQAL+ +SP LYWLCIIFLGFDVFFVV
Sbjct: 180 HDGTSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALSHNSPQLYWLCIIFLGFDVFFVV 239

Query: 181 FCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDG- 239
           FCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIE+LSKFKFRR+ + EKL+ +G 
Sbjct: 240 FCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIEQLSKFKFRRVDNDEKLTGNGD 299

Query: 240 -QGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 298
            QG  GG+MTECGT++P EH+LS EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL
Sbjct: 300 EQGPLGGVMTECGTDSPVEHILSEEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 359

Query: 299 YINATCPLCKYNILKSSSNQDREEV 323
           YINATCPLCKYNILKSSS +DREEV
Sbjct: 360 YINATCPLCKYNILKSSS-RDREEV 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565289|ref|XP_003550874.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/325 (74%), Positives = 275/325 (84%), Gaps = 9/325 (2%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN AFVA A +V+VLS+NE PNMPL
Sbjct: 59  MREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNCAFVAAAATVLVLSRNENPNMPL 118

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRR----VSAFGGAEEGNLNSGTTRGDSGEYVSL 116
           RLWIVGYA+Q VLH+ CVCVEY+RR R R     +A  G   G+L+S +  G SG YVS 
Sbjct: 119 RLWIVGYALQSVLHVACVCVEYRRRLRHREHSNAAAVSGDGSGDLSSPSMDG-SGHYVSF 177

Query: 117 ANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDV 176
               +++G S+AKHLESANTMFSFIWW++GFYWVSA  +AL +DSPLLYWLCI FLGFDV
Sbjct: 178 ----DDDGISMAKHLESANTMFSFIWWVVGFYWVSADSEALVQDSPLLYWLCIAFLGFDV 233

Query: 177 FFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLS 236
           FFVVFC+ALACIIGIAVCCCLPCIIA+LYAVADQEGASKEDIE+LSKFKF+R    EK +
Sbjct: 234 FFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKHA 293

Query: 237 DDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDK 296
            + QG+ GGIM EC  ++P EHVLS+EDAECCICLSAYDDGVELR+LPC HHFHCACVDK
Sbjct: 294 GNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRKLPCSHHFHCACVDK 353

Query: 297 WLYINATCPLCKYNILKSSSNQDRE 321
           WL+INATCPLCKYNILKS+S+   E
Sbjct: 354 WLHINATCPLCKYNILKSTSHGQDE 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460475|ref|XP_004147971.1| PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Cucumis sativus]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/327 (77%), Positives = 286/327 (87%), Gaps = 6/327 (1%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRETAAEQLEERQSDWAYSKPVV+LDI+WN AFV VA +++VLS+NE P+MPL
Sbjct: 59  MREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATILVLSRNESPSMPL 118

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGN----LNSGTTRGDSGEYVSL 116
           RLWIVGYA QC+LHMVCVCVEY+RR + R SAF   EEGN    ++   +R +S  YVSL
Sbjct: 119 RLWIVGYAFQCILHMVCVCVEYRRRRQLRYSAFSSMEEGNSARSISGLGSRANSSHYVSL 178

Query: 117 ANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDV 176
           A QL+E  +SVAKHLESANTMFSFIWWIIGFYWVSAGGQ+LA+ SPLLYWLCIIFLGFDV
Sbjct: 179 A-QLDENDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAQASPLLYWLCIIFLGFDV 237

Query: 177 FFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLS 236
           FFVVFCVALACIIGIAVCCCLPCIIA+LYAVADQEGA+KED+E+LSKFKFR++ +TEK S
Sbjct: 238 FFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVENTEKFS 297

Query: 237 DDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDK 296
            D Q   GG+M+EC T++P E  L  EDAECCICLSAY+DGVELRELPCGHHFHCACVDK
Sbjct: 298 TDVQEPLGGVMSECCTDSPIERPLLQEDAECCICLSAYEDGVELRELPCGHHFHCACVDK 357

Query: 297 WLYINATCPLCKYNILKSSSNQDREEV 323
           WLYINATCPLCKYNILK +SN  +EEV
Sbjct: 358 WLYINATCPLCKYNILK-NSNLAQEEV 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514046|ref|XP_003525718.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/325 (75%), Positives = 278/325 (85%), Gaps = 6/325 (1%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN AFVA A +V +LS+NE PNMPL
Sbjct: 57  MREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVAAAATVFILSRNENPNMPL 116

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSA----FGGAEEGNLNSGTTRGDSGEYVSL 116
           RLWIVGYA+QCVLH+ CVCVEY+RR RRR  +      G   G+L   +  G SG YVSL
Sbjct: 117 RLWIVGYALQCVLHVACVCVEYQRRLRRREQSNAAAIAGGGSGDLGPPSMDG-SGHYVSL 175

Query: 117 ANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDV 176
           A Q +++G S+AKHLESANTMFSFIWW++GFYWVSA  ++L RDSPLLYWLCI FLGFDV
Sbjct: 176 A-QFDDDGISMAKHLESANTMFSFIWWVVGFYWVSADSESLVRDSPLLYWLCIAFLGFDV 234

Query: 177 FFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLS 236
           FFVVFC+ALACI+GIAVCCCLPCIIA+LYAVADQEGASKEDIE+LSKFKF+R    EKL+
Sbjct: 235 FFVVFCMALACIVGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKLA 294

Query: 237 DDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDK 296
            + QG+ GGIM EC  ++P EHVLS+EDAECCICLSAYDDGVELR+LPCGHHFHCACVDK
Sbjct: 295 GNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACVDK 354

Query: 297 WLYINATCPLCKYNILKSSSNQDRE 321
           WL+INATCPLCKYNILKS+S+   E
Sbjct: 355 WLHINATCPLCKYNILKSTSHAQDE 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539808|ref|XP_003538385.1| PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Glycine max]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/333 (74%), Positives = 273/333 (81%), Gaps = 11/333 (3%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV VA +V+VLS +E P MPL
Sbjct: 56  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVVVAGTVLVLSASEAPGMPL 115

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRS----------RRRVSAFGGAEEGNLNSGTTRGDS 110
           RLWIVGYA+QCVLHMV VCVEY+RR           + RV +  G    +   G+    +
Sbjct: 116 RLWIVGYAMQCVLHMVFVCVEYRRRRRQQPAAASSVQDRVGSSSGNLSVSSREGSASASA 175

Query: 111 GEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCII 170
                L  QL++E TSVAKHLESANTMFSF+WWIIGFYWVSAGGQALA+DSP LYWLCII
Sbjct: 176 SAQNVLLGQLDDESTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCII 235

Query: 171 FLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMV 230
           FLGFDVFFVVFCVALACIIGIAVCCCLPCIIA+LYAV DQEGASKEDIE+LSKFKFRR+ 
Sbjct: 236 FLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVTDQEGASKEDIEQLSKFKFRRIE 295

Query: 231 DTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFH 290
             EKL+   QG  GGIMTEC  ++P EH L+ EDAECCICLS+YDDGVELRELPCGHHFH
Sbjct: 296 SNEKLTGTIQGPVGGIMTECQADSPIEHALAEEDAECCICLSSYDDGVELRELPCGHHFH 355

Query: 291 CACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
           C CVDKWLYINATCPLCKYNILK SSN  +EEV
Sbjct: 356 CVCVDKWLYINATCPLCKYNILK-SSNLSQEEV 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474241|ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/325 (78%), Positives = 283/325 (87%), Gaps = 6/325 (1%)

Query: 3   EPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRL 62
           EPSM+VRETAAEQLEERQSDWAYSKPVVVLD+IWN AFV VA +V+VLS+ E P+MPLR 
Sbjct: 61  EPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPLRF 120

Query: 63  WIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRG----DSGEYVSLAN 118
           WIVGYA+QC+LH+VCV VEY+RR RR    FG  ++G  + G+       DS +YV+LA+
Sbjct: 121 WIVGYALQCILHIVCVSVEYRRRRRR-AGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLAS 179

Query: 119 QLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGFDVFF 178
             +E  TSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSP LYWLCIIFLGFDVFF
Sbjct: 180 LGDESSTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCIIFLGFDVFF 239

Query: 179 VVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDD 238
           VVFCVALAC+IGIAVCCCLPCIIAILYAVADQEGASKEDI++LS+FKFR++ D EK+  D
Sbjct: 240 VVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRKVGDIEKIDGD 299

Query: 239 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 298
            QG+ GGIMTECGT+ P EHVLS EDAECCICLSAYDDGVELRELPCGHHFHC CVDKWL
Sbjct: 300 IQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHFHCTCVDKWL 359

Query: 299 YINATCPLCKYNILKSSSNQDREEV 323
           YINATCPLCKYNILKSSSN  REEV
Sbjct: 360 YINATCPLCKYNILKSSSN-GREEV 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481703|ref|XP_003611137.1| E3 ubiquitin-protein ligase [Medicago truncatula] gi|355512472|gb|AES94095.1| E3 ubiquitin-protein ligase [Medicago truncatula] gi|388506770|gb|AFK41451.1| unknown [Medicago truncatula]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/333 (75%), Positives = 282/333 (84%), Gaps = 12/333 (3%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPS++VRE AAEQLEERQSDWAYSKPVV+LDI+WN AFV VA + + LS+NE P MPL
Sbjct: 57  MREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVIVAGTALFLSRNEAPEMPL 116

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRV----SAFGGAEE---GNLNS--GTTRGDSG 111
           RLWI GY +QCVLHMVCVC EY+RR R +     +A  G++    GN +S  G+    SG
Sbjct: 117 RLWIAGYVLQCVLHMVCVCFEYRRRRRFQRSSSSNAVAGSDRIGSGNFSSREGSRSAVSG 176

Query: 112 E-YVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCII 170
             YVSLA Q +EE TSVAKHLESANTMFSFIWWIIGFYWVSAGGQALA+DSP LYWLCI+
Sbjct: 177 SSYVSLA-QFDEESTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQDSPQLYWLCIV 235

Query: 171 FLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMV 230
           FLGFDVFFVVFCVALAC+IGIAVCCCLPCIIA+LYAVADQEGASKEDIE+LSKFKFR++ 
Sbjct: 236 FLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRKVE 295

Query: 231 DTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFH 290
             EK +D+ QG  GGIMTEC  ++P EHVL+ EDAECCICLS+YDDGVELRELPCGHHFH
Sbjct: 296 SNEKQTDNNQGPVGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFH 355

Query: 291 CACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
           CACVDKWLYINATCPLCKYNILK SSN  +EEV
Sbjct: 356 CACVDKWLYINATCPLCKYNILK-SSNLGQEEV 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497216|ref|XP_003517458.1| PREDICTED: E3 ubiquitin-protein ligase At1g12760-like [Glycine max]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/331 (76%), Positives = 278/331 (83%), Gaps = 12/331 (3%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN AFV VA +V+VLS +E P MPL
Sbjct: 56  MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGAVLVLSASEAPGMPL 115

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRS----------RRRVSAFGGAEEGNLNSGTTRGDS 110
           RLWIVGYA+QCVLHMVCVCVEY+RR           + RV +  G    +   G+  G S
Sbjct: 116 RLWIVGYAMQCVLHMVCVCVEYRRRRRQQRAAASSVQDRVGSSSGNLSVSSREGSASG-S 174

Query: 111 GEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCII 170
            +YVSL  QL++EGTSVAKHLESANTMFSF+WWIIGFYWVSAGGQALA+DSP LYWLCII
Sbjct: 175 AQYVSLG-QLDDEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCII 233

Query: 171 FLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMV 230
           FLGFDVFFVVFCVALACIIGIAVCCCLPCIIA+LYAVADQEGASKEDIE+LSKFKFRR+ 
Sbjct: 234 FLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIE 293

Query: 231 DTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFH 290
             EKL+   QG  GGIMTEC  ++P EHVL+ EDAECCICLS+YDDGVELRELPCGHHFH
Sbjct: 294 SNEKLTGTIQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFH 353

Query: 291 CACVDKWLYINATCPLCKYNILKSSSNQDRE 321
           C CVDKWLYINATCPLCKYNILKS++    E
Sbjct: 354 CVCVDKWLYINATCPLCKYNILKSNTLSQEE 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474243|ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 3 [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/334 (76%), Positives = 282/334 (84%), Gaps = 15/334 (4%)

Query: 3   EPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRL 62
           EPSM+VRETAAEQLEERQSDWAYSKPVVVLD+IWN AFV VA +V+VLS+ E P+MPLR 
Sbjct: 61  EPSMLVRETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPLRF 120

Query: 63  WIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRG----DSGEYVSLAN 118
           WIVGYA+QC+LH+VCV VEY+RR RR    FG  ++G  + G+       DS +YV+LAN
Sbjct: 121 WIVGYALQCILHIVCVSVEYRRRRRR-AGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLAN 179

Query: 119 QLEEEG---------TSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCI 169
             E            +SVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSP LYWLCI
Sbjct: 180 VDEHHSQTCQFLSLLSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCI 239

Query: 170 IFLGFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRM 229
           IFLGFDVFFVVFCVALAC+IGIAVCCCLPCIIAILYAVADQEGASKEDI++LS+FKFR++
Sbjct: 240 IFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRKV 299

Query: 230 VDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHF 289
            D EK+  D QG+ GGIMTECGT+ P EHVLS EDAECCICLSAYDDGVELRELPCGHHF
Sbjct: 300 GDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHF 359

Query: 290 HCACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
           HC CVDKWLYINATCPLCKYNILKSSSN  REEV
Sbjct: 360 HCTCVDKWLYINATCPLCKYNILKSSSN-GREEV 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453718|ref|XP_002271651.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1 [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/325 (70%), Positives = 262/325 (80%), Gaps = 10/325 (3%)

Query: 1   MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
           MREPSM VRETAAEQLEERQSDWAYSKP+V+LDI+WNLAFV VA +V+V+S++E P+ PL
Sbjct: 54  MREPSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPL 113

Query: 61  RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTT--------RGDSGE 112
           RLWI+GY +QCVLHMVCVCVEYKRR  RR+ + G  E                  GD  +
Sbjct: 114 RLWIIGYGLQCVLHMVCVCVEYKRR--RRLVSSGALERSGGWGSGHLSSSSGSDEGDPID 171

Query: 113 YVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFL 172
           Y       +E+ TSVAKHLESANTMFSFIWWIIGFYWVSAGGQ L RDSP LYWLCI+FL
Sbjct: 172 YRVEVRNRDEDETSVAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIVFL 231

Query: 173 GFDVFFVVFCVALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDT 232
            FDVFFVV CVA+AC+IGIAVCCCLPCIIAILY VADQEGA+KE+IERL K+KFRR+ ++
Sbjct: 232 AFDVFFVVICVAVACVIGIAVCCCLPCIIAILYTVADQEGATKEEIERLPKYKFRRIGES 291

Query: 233 EKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCA 292
           EKL+ + Q S GGIMTEC T+TP EHV+  EDAECCICLSAY+D  ELRELPC H FHC 
Sbjct: 292 EKLNGEIQESFGGIMTECDTDTPMEHVIPQEDAECCICLSAYEDETELRELPCRHRFHCT 351

Query: 293 CVDKWLYINATCPLCKYNILKSSSN 317
           C+DKWLYINATCPLCK NILK++S 
Sbjct: 352 CIDKWLYINATCPLCKLNILKNASQ 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.993	0.786	0.684	7e-125
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.996	0.845	0.679	3e-124
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.950	0.787	0.696	2e-120
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	1.0	0.852	0.580	1.1e-101
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.934	0.880	0.490	1.7e-82
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.947	0.852	0.484	1e-75
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.863	0.615	0.345	4.2e-40
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.848	0.673	0.323	1.8e-39
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.157	0.152	0.549	7.8e-25
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.195	0.183	0.444	4.5e-22

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 232/339 (68%), Positives = 272/339 (80%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+S+ E P MPL
Sbjct:    72 MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPL 131

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRRSRRRV------------SAFGGAEEGNLNS---GT 105
             R+W++GYA+QCVLHMVCVCVEY+RR+RRR             S+   +   +L     G+
Sbjct:   132 RVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGS 191

Query:   106 TRGDSGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLY 165
              R    + +SL + L+ E +SVAKHLESANTMFSFIWWIIGFYWVSAGGQ LA++SP +Y
Sbjct:   192 RRNSGVQDLSLGH-LDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIY 250

Query:   166 WLCIIFLGXXXXXXXXXXALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFK 225
             WL I+FLG          ALAC+IGIAVCCCLPCIIA+LYAVADQEGASKEDIE+L+KFK
Sbjct:   251 WLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFK 310

Query:   226 FRRMVDTEK-LSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELP 284
             FR++ D  K  +D+ QG+  GIMTECGT++P EH L  EDAECCICLSAY+DG ELRELP
Sbjct:   311 FRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELP 370

Query:   285 CGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
             CGHHFHC+CVDKWLYINATCPLCKYNILKSS N DREEV
Sbjct:   371 CGHHFHCSCVDKWLYINATCPLCKYNILKSS-NLDREEV 408

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
 Identities = 229/337 (67%), Positives = 267/337 (79%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL
Sbjct:    46 MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPL 105

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRR-SRRR--VSAFGGAEEGNLNS--------GTTRGD 109
             R+WI+GY +QC++HMVCVCVEY+RR SRRR  +S    +   + +S        G +R  
Sbjct:   106 RVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNS 165

Query:   110 SGEYVSLANQLEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCI 169
                Y+ L  QLE E  S AKHLESANTM SFIWW+IGFYWVS+GGQ LA+ SP LYWLCI
Sbjct:   166 DERYLELG-QLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCI 224

Query:   170 IFLGXXXXXXXXXXALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRM 229
             +FLG          ALAC+IGIAVCCCLPCIIA+LYAVA+QEGASKEDI++L+KFKFR++
Sbjct:   225 VFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKV 284

Query:   230 VDTEKLSDD---GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCG 286
              DT K + D   GQG  GG+MTECGT++P EH L +EDAECCICLSAY+D  ELRELPCG
Sbjct:   285 GDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCG 344

Query:   287 HHFHCACVDKWLYINATCPLCKYNILKSSSNQDREEV 323
             HHFHC CVDKWLYINATCPLCKYNILKSS+ ++ EEV
Sbjct:   345 HHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGEEV 381

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 223/320 (69%), Positives = 257/320 (80%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+  +V++LS++E+PNMPL
Sbjct:    81 MREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPL 140

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
             R+W+VGY IQC LHM CVCVEY+RR RRR    GG       SG T   S +YVSLA QL
Sbjct:   141 RVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGG------SGLTNSSSQQYVSLA-QL 193

Query:   121 EEEG-TS-VAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXX 178
             E+ G TS  AKHLESANTMFSFIWWIIGFYWVSAGGQ L+ DSP LYWLCIIFLG     
Sbjct:   194 EDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFF 253

Query:   179 XXXXXALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDD 238
                  ALAC+IG+AVCCCLPCIIAILYAVADQEGASK DI+++ KF+F +  + EKLS  
Sbjct:   254 VVFCVALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLS-- 311

Query:   239 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 298
               G   GIMTECGT++P E  LS EDAECCICL  Y+DGVELRELPC HHFHC C+DKWL
Sbjct:   312 --GKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWL 369

Query:   299 YINATCPLCKYNILKSSSNQ 318
             +IN+ CPLCK+NILK+++N+
Sbjct:   370 HINSRCPLCKFNILKNANNE 389

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 188/324 (58%), Positives = 235/324 (72%)

Query:     1 MREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPL 60
             +REPS+ VRE AAEQLEERQS WAYSKP++VLDI+WN  FV V+ +++  S +E P++PL
Sbjct:    56 LREPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPL 115

Query:    61 RLWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
             RLWI+GY +QC+ H+ CV  EYKRR         G +  N  S +   D  +  S+ N  
Sbjct:   116 RLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTD 175

Query:   121 EEE-GTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXX 179
             +++ GTS  KHLESANTMFSF+WWIIGFYWV+A  +ALA+ SP LYWLC+ FL       
Sbjct:   176 DDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFV 235

Query:   180 XXXXALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDG 239
                 A+A +IGIAVCCCLPCIIAILYA+ADQEGA  E+IERL KFKF  + ++EK++ + 
Sbjct:   236 VICVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVNGEI 295

Query:   240 QGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY 299
             + +QGGIMT   TE+  E +L +EDAEC ICL AY+DGVELRELPC HHFH  CVDKWL 
Sbjct:   296 RETQGGIMTGLDTESQTERMLLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDKWLR 355

Query:   300 INATCPLCKYNILKSSSNQDREEV 323
             INATCPLCK+NILK+      E+V
Sbjct:   356 INATCPLCKFNILKNGEPSGSEQV 379

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 156/318 (49%), Positives = 213/318 (66%)

Query:     2 REPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLR 61
             R  SM+VRETAA++LEER++DW YSKPVV LD++WN AFV VA  ++++ + E+PN+P+R
Sbjct:    41 RGASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIR 100

Query:    62 LWIVGYAIQCVLHMVCVCVEYKRRSRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQLE 121
             +WI GYAIQC++H+V V +E+++R+ R       +  G+L +        E     ++  
Sbjct:   101 IWICGYAIQCLVHVVLVWLEFRKRNAR-------SRPGDLEAAQATNQDSE-----DEDN 148

Query:   122 EEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXXXX 181
             +E     K  ES NT+ SF+WWI+GFYW+ +GG  L +++  LYWL  +FL         
Sbjct:   149 DERFLSTKTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIF 208

Query:   182 XXALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDGQG 241
                LAC+IGIA+CCCLPCIIA+LYAVA QEGAS+ D+  L K++F  M + EK SD G G
Sbjct:   209 CVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGG-G 267

Query:   242 SQGGIMTECGTET-PNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI 300
                 I  +  +E   NE VL  EDA+CCICLS+Y+DG EL  LPC HHFH  C+ KWL +
Sbjct:   268 KM--IPVDAASENLGNERVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKM 325

Query:   301 NATCPLCKYNILKSSSNQ 318
             NATCPLCK+NILK +  +
Sbjct:   326 NATCPLCKFNILKGNEQE 343

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 155/320 (48%), Positives = 193/320 (60%)

Query:     2 REPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSQNERPNMPLR 61
             R PSM+VRETAA  LEER+ DW YSKPVV  DI+WN A V  +  ++V +  ERPN P+R
Sbjct:    50 RAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIR 109

Query:    62 LWIVGYAIQCVLHMVCVCVEYKRR-SRRRVSAFGGAEEGNLNSGTTRGDSGEYVSLANQL 120
             +WI  Y +QC+ H+V V  EY RR S RR       +  + N         EY       
Sbjct:   110 VWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNI--------EY-DYEQDS 160

Query:   121 EEEGT--SVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXX 178
             ++  T  S  K  ES NT+ SFIWWIIGFYWV  GG  L  ++P LYWL +IFL      
Sbjct:   161 DDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFF 220

Query:   179 XXXXXALACIIGIAVCCCLPCIIAILYAVADQEGASKEDIERLSKFKFRRMVDTEKLSDD 238
                   LAC++GIA+CCCLPCIIA+LYAVA  EG S+ ++  L  +KF+     EK +  
Sbjct:   221 AVFCVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEK-NIT 279

Query:   239 GQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL 298
             G G    I    G     E  L  EDA+CCICLS+Y+DG EL  LPC HHFH  C+ KWL
Sbjct:   280 GPGKMVPIPIN-GLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWL 338

Query:   299 YINATCPLCKYNILKSSSNQ 318
              + ATCPLCKYNILK +++Q
Sbjct:   339 KMRATCPLCKYNILKGTTDQ 358

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 107/310 (34%), Positives = 158/310 (50%)

Query:    30 VVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRR 89
             + +++   +  +  A  V+ LS++E P  PL  WIVGYA  CV  +  +   Y   S + 
Sbjct:   113 ISIELFLTVGQIIAAIVVLSLSKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYH-SNQA 171

Query:    90 VSAFGGAEEGNLN----------SGTTRGDSGEYVSLANQLEE-EG-TSVAK------HL 131
                  G    NLN          S T+  D  +  + +++     G  S A+      + 
Sbjct:   172 SEQDSGQHRPNLNVAAGPFAFSISRTSEADGRQTNTTSSRGSRYPGFISAARLKVIVEYF 231

Query:   132 ESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXXXXXXALACIIGI 191
             + A   F  +W+++G  W+  GG + A ++P LY LC++FL           A+  I+  
Sbjct:   232 KMALDCFFAVWFVVGNVWIF-GGHSSAAEAPNLYRLCLVFL----TFSCIGYAMPFILCT 286

Query:   192 AVCCCLPCIIAIL-YA--VADQEGASKEDIERLSKFKFRRMVDTEKLSDDGQG-SQGGIM 247
              +CCCLPCII+IL Y   +    GA+ E I  L   KF+         D+G   S+GG++
Sbjct:   287 TICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKSRSNGDDNGSSTSEGGVV 346

Query:   248 TECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 307
                GT+  NE  +S EDA CCICL+ Y +  ELRELPC H FH  CVDKWL INA+CPLC
Sbjct:   347 A-AGTD--NERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLC 403

Query:   308 KYNILKSSSN 317
             K  + + +S+
Sbjct:   404 KSEVGEKNSD 413

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 101/312 (32%), Positives = 160/312 (51%)

Query:    30 VVLDIIWNLAFVAVAFSVMVLSQNERPNMPLRLWIVGYAIQCVLHMVCVCVEYKRRSRRR 89
             + ++++  +A +  A  VMVL+++E P  PL  W++GY   C+  +  +   ++ R+  R
Sbjct:   106 ISVELVVTVAQIVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILY--WRFRTYNR 163

Query:    90 VSAFGGAEEGNLNSGTTRGDSGEYVSLANQLEEE---GTSVAK----------------- 129
              +    ++    + G +       VS+A   +EE   G S A                  
Sbjct:   164 ATGQDSSQRATSSQGNSESTPYTAVSVAQAADEENSTGVSAAPRNNQVGESLRTRLNGLV 223

Query:   130 -HLESANTMFSFIWWIIGFYWVSAGGQALARDSPLLYWLCIIFLGXXXXXXXXXXALACI 188
              H + A   F  +W+++G  W+  GG +   DSP LY LCI FL           A+  I
Sbjct:   224 DHFKMAIDCFFAVWFVVGNVWIF-GGHSSPSDSPKLYRLCIAFL----TFSCIGYAMPFI 278

Query:   189 IGIAVCCCLPCIIAIL---YAVADQEGASKEDIERLSKFKFRRMVDTE-KLSDDGQGSQG 244
             +   +CCCLPC+I++L      +   GA+ E I  L  ++F+     + + S++G+G   
Sbjct:   279 LCATICCCLPCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSRNDLEFSEEGEG--- 335

Query:   245 GIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATC 304
             G +   G++   + ++S EDA CCICL+ Y D  ++RELPC H FH  CVDKWL INATC
Sbjct:   336 GFLL-LGSQ--KKRLISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATC 392

Query:   305 PLCKYNILKSSS 316
             PLCK  + +SSS
Sbjct:   393 PLCKNEVGESSS 404

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query:   261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
             +N D ECCICL+ Y +  E+R+LPC H FH  CVD+WL I + CPLCK ++
Sbjct:   283 ANNDPECCICLAKYKEKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 333

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
 Identities = 28/63 (44%), Positives = 42/63 (66%)

Query:   249 ECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
             +  +++ ++     +D ECCICL+ Y D  E+R+LPC H FH  CVD+WL I + CPLCK
Sbjct:   279 DSASDSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCK 338

Query:   309 YNI 311
              ++
Sbjct:   339 QDL 341

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LN71	RING1_ARATH	6, ., 3, ., 2, ., -	0.7126	0.9876	0.7818	yes	no
Q8LDB8	RING2_ARATH	6, ., 3, ., 2, ., -	0.7020	0.9907	0.8398	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001121001 SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (316 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-13
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	5e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-08
smart00184	40	smart00184, RING, Ring finger	2e-07
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	3e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	5e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	7e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
           EC ICL  ++ G E+  LPCGH FH  C+DKWL  + TCPLC+
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNI 311
           EC ICL  + + V L  LPCGH F  +C+DKWL     TCPLC+  I
Sbjct: 1   ECPICLEEFREPVVL--LPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWL--YINATCPLCK 308
           EC IC+S +     LR LPC H FH  CVDKWL  Y N  CP+C+
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNK-CPVCR 368

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLC 307
           C ICL  Y    +   LPCGH F  +C+ KWL   N TCP+C
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 263 EDAECCICLSAYD----------DGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
           ED  C IC + +D          D   +    CGH FH  C+ +WL    TCPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY 309
           E+ EC ICL    D V L   PCGH F   C+ ++L   + CP+C+ 
Sbjct: 1   EELECPICLDLLRDPVVL--TPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 253 ETPNEHVLSNEDAECCICLSAY----------DDGVELRELPCGHHFHCACVDKWLYINA 302
            T  E  L+N D  C IC+                +  + LPCGH  H  C+  WL    
Sbjct: 276 PTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ 335

Query: 303 TCPLCK 308
           TCP+C+
Sbjct: 336 TCPICR 341

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLC 307
           C ICL    D V +  LPCGH F   C+  WL   N TCPLC
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 241  GSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELP------CGHHFHCACV 294
               G  M   G    N     +   EC IC S  D  V+ R LP      C + FH  C+
Sbjct: 1446 KKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLD-MVD-RSLPSKRCATCKNKFHTRCL 1503

Query: 295  DKWLYI--NATCPLCKYNI 311
             KW      + CPLC+  I
Sbjct: 1504 YKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 260 LSNEDAECCICLS-AYDDGVELRE---LP-CGHHFHCACVDKWLYINATCPLCK 308
             ++D EC IC+   YD  ++      L  C H F   C+D W     TCP+C+
Sbjct: 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.81
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.57
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.38
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.35
PHA02929	238	N1R/p28-like protein; Provisional	99.33
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.25
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.06
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.0
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.99
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.97
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.94
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.93
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.91
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.88
PF14634	44	zf-RING_5: zinc-RING finger domain	98.72
PHA02926	242	zinc finger-like protein; Provisional	98.72
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.71
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.69
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.62
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.59
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.58
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.58
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.57
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.5
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.42
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.42
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.35
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.16
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.13
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.12
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.02
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.96
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.92
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.91
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.87
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.78
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.72
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.64
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.63
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.53
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.51
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.39
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.21
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.19
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.08
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.95
PHA02862	156	5L protein; Provisional	96.9
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.87
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.8
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.74
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.62
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.55
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.47
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.43
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.42
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.38
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.23
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.39
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.37
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.29
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.28
COG5152	259	Uncharacterized conserved protein, contains RING a	95.08
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.04
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.86
PHA03096	284	p28-like protein; Provisional	94.78
KOG2660	331	consensus Locus-specific chromosome binding protei	94.3
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.28
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.24
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.83
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	93.83
KOG1609	323	consensus Protein involved in mRNA turnover and st	93.78
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.34
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.19
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	92.97
COG5222	427	Uncharacterized conserved protein, contains RING Z	92.52
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	92.17
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	92.16
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	91.53
KOG1940	276	consensus Zn-finger protein [General function pred	91.3
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.08
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.41
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	89.81
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.61
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	89.39
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	89.38
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	88.17
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	86.85
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	86.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.52
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	86.4
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	85.87
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.95
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	84.38
KOG1001	674	consensus Helicase-like transcription factor HLTF/	84.13
PF04641	260	Rtf2: Rtf2 RING-finger	83.73
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.61
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	82.29
PF11023	114	DUF2614: Protein of unknown function (DUF2614); In	81.79
KOG0298	1394	consensus DEAD box-containing helicase-like transc	81.79
KOG3053	293	consensus Uncharacterized conserved protein [Funct	81.29

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.3e-20  Score=173.75  Aligned_cols=81  Identities=36%  Similarity=0.771  Sum_probs=69.3

Q ss_pred             hccCCCHHHHhhcccceeeeccccccCcCCCCCCCCCcccccCCCCCCcccCCCCCCccccccccccCCCceEEeCCCCc
Q 020673          209 DQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH  288 (323)
Q Consensus       209 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~  288 (323)
                      +.+++.++.++++|..+|+...+.+..                             ..|+|||++|++||++|.|||+|.
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-----------------------------~~CaIClEdY~~GdklRiLPC~H~  253 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-----------------------------DTCAICLEDYEKGDKLRILPCSHK  253 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCC-----------------------------ceEEEeecccccCCeeeEecCCCc
Confidence            456889999999999999876544211                             479999999999999999999999


Q ss_pred             cchHhHHHHHhcCCC-CccccccccCCCCcc
Q 020673          289 FHCACVDKWLYINAT-CPLCKYNILKSSSNQ  318 (323)
Q Consensus       289 FH~~CId~WL~~~~t-CPlCR~~i~~~~~~~  318 (323)
                      ||..|||+||..+.+ ||+||+++.+....+
T Consensus       254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~  284 (348)
T KOG4628|consen  254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE  284 (348)
T ss_pred             hhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence            999999999998755 999999998766544

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.57  E-value=8e-16  Score=104.16  Aligned_cols=43  Identities=49%  Similarity=1.291  Sum_probs=40.8

Q ss_pred             ccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccc
Q 020673          266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK  308 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR  308 (323)
                      +|+||+++|.+++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            6999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.3e-13  Score=124.72  Aligned_cols=52  Identities=44%  Similarity=1.051  Sum_probs=47.8

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~  313 (323)
                      ....+|+|||++|-.+|.++.|||+|.||..|+++|+. -+..||+||.+++.
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            34579999999999999999999999999999999998 67889999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.35  E-value=6.2e-13  Score=99.85  Aligned_cols=45  Identities=44%  Similarity=1.068  Sum_probs=36.6

Q ss_pred             CCccccccccccC----------CCceEEeCCCCccchHhHHHHHhcCCCCcccc
Q 020673          264 DAECCICLSAYDD----------GVELRELPCGHHFHCACVDKWLYINATCPLCK  308 (323)
Q Consensus       264 d~~C~ICL~~y~~----------~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR  308 (323)
                      +..|+||+++|.+          +-.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3469999999942          23456668999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.33  E-value=1.3e-12  Score=118.71  Aligned_cols=50  Identities=34%  Similarity=0.798  Sum_probs=41.9

Q ss_pred             CCCccccccccccCCCc----eEEe-CCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          263 EDAECCICLSAYDDGVE----LREL-PCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~----lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ++.+|+||++.+.+++.    +..+ +|+|.||.+||.+|++.+.+||+||.++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            34789999999876541    2344 59999999999999999999999999875

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.2e-12  Score=120.10  Aligned_cols=57  Identities=35%  Similarity=0.929  Sum_probs=47.4

Q ss_pred             cccCCCCCCcccccccc-ccCC---------CceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          257 EHVLSNEDAECCICLSA-YDDG---------VELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       257 e~~~~~ed~~C~ICL~~-y~~~---------~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      +.++..+|..|.||+++ ++.+         ...+.|||+|.||..|++.|+++++|||+||.++.-
T Consensus       280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if  346 (491)
T COG5243         280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF  346 (491)
T ss_pred             hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence            34556778999999999 5544         235789999999999999999999999999999543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.06  E-value=1.5e-10  Score=101.35  Aligned_cols=52  Identities=37%  Similarity=0.837  Sum_probs=43.3

Q ss_pred             CCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc----------------CCCCccccccccCC
Q 020673          260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----------------NATCPLCKYNILKS  314 (323)
Q Consensus       260 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~i~~~  314 (323)
                      ...++.+|+||++.++++   ..++|+|.||..||.+|+..                ...||+||.++...
T Consensus        14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            345678999999998877   67899999999999999852                35799999998653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.00  E-value=2.9e-10  Score=75.75  Aligned_cols=44  Identities=50%  Similarity=1.112  Sum_probs=36.9

Q ss_pred             ccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccc
Q 020673          266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNI  311 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i  311 (323)
                      +|+||++.+  .+.....+|+|.||..|+++|++. +..||.||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  334455669999999999999997 78899999764

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.2e-10  Score=103.95  Aligned_cols=54  Identities=30%  Similarity=0.778  Sum_probs=47.1

Q ss_pred             cCCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          259 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       259 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ...+.+..|.+||+.-+++   ..+||+|.|+..||..|+..++.||+||....+++
T Consensus       234 ~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  234 SIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             cCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            4455668999999998777   78999999999999999999999999999876643

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.97  E-value=2.8e-10  Score=79.03  Aligned_cols=47  Identities=40%  Similarity=0.875  Sum_probs=39.8

Q ss_pred             CCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCcccccccc
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      |+..|.||++...+   ...+||+|. |+..|+.+|++.+..||+||++|.
T Consensus         1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            35689999998655   588999999 999999999999999999999885

...

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=9.2e-10  Score=98.25  Aligned_cols=51  Identities=31%  Similarity=0.703  Sum_probs=43.2

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc---CCCCccccccccCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILKS  314 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~i~~~  314 (323)
                      ....-+|.|||+.=+|+   .++.|+|.|++.||.+||..   +..||+||..|...
T Consensus        44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            45568999999997777   67889999999999999986   45699999988654

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=3.4e-10  Score=115.32  Aligned_cols=59  Identities=34%  Similarity=0.772  Sum_probs=49.9

Q ss_pred             ccCCCCCCccccccccccCCCc--eEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673          258 HVLSNEDAECCICLSAYDDGVE--LRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  316 (323)
Q Consensus       258 ~~~~~ed~~C~ICL~~y~~~~~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~  316 (323)
                      +.....+..|.||++++..+++  .+.|||+|.||..|+.+|+++.++||.||..+..+..
T Consensus       285 ~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  285 RGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL  345 (543)
T ss_pred             hhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence            3345568899999999998765  7899999999999999999999999999995554433

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.91  E-value=9.5e-10  Score=83.93  Aligned_cols=51  Identities=35%  Similarity=0.769  Sum_probs=40.0

Q ss_pred             CCCcccccccccc--------CCC--ceEEeCCCCccchHhHHHHHhc---CCCCccccccccC
Q 020673          263 EDAECCICLSAYD--------DGV--ELRELPCGHHFHCACVDKWLYI---NATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~--------~~~--~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~i~~  313 (323)
                      +|..|.||...|+        .++  .+..-.|+|.||..||.+|+..   +.+||+||++...
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            4678999999987        333  3333359999999999999985   5789999997654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.88  E-value=1.1e-09  Score=72.06  Aligned_cols=39  Identities=44%  Similarity=1.056  Sum_probs=33.7

Q ss_pred             cccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccc
Q 020673          267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC  307 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlC  307 (323)
                      |.||++.+.+  .+..++|+|.|+.+|+.+|++.+.+||.|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8899999887  45688999999999999999999999998

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.72  E-value=8.5e-09  Score=69.64  Aligned_cols=44  Identities=32%  Similarity=0.773  Sum_probs=39.5

Q ss_pred             ccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673          266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY  309 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  309 (323)
                      .|.||.++|.++...+.++|+|.|+.+|+++.......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999977777899999999999999999867788999985

>PHA02926 zinc finger-like protein; Provisional

Probab=98.72  E-value=7.1e-09  Score=92.12  Aligned_cols=50  Identities=26%  Similarity=0.693  Sum_probs=38.0

Q ss_pred             CCCccccccccccCC-----CceEEeC-CCCccchHhHHHHHhcC------CCCcccccccc
Q 020673          263 EDAECCICLSAYDDG-----VELRELP-CGHHFHCACVDKWLYIN------ATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~-----~~lr~LP-C~H~FH~~CId~WL~~~------~tCPlCR~~i~  312 (323)
                      ++.+|+|||+..-+.     ..-..|+ |+|.||..||++|.+.+      .+||+||....
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            457899999886332     1233564 99999999999999753      45999998764

>smart00184 RING Ring finger

Probab=98.71  E-value=1.1e-08  Score=65.57  Aligned_cols=38  Identities=50%  Similarity=1.113  Sum_probs=33.1

Q ss_pred             cccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccc
Q 020673          267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLC  307 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlC  307 (323)
                      |+||++.   ......+||+|.||..|+++|++ .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899988   34568899999999999999998 67789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.69  E-value=8e-09  Score=68.42  Aligned_cols=39  Identities=51%  Similarity=1.187  Sum_probs=34.7

Q ss_pred             cccccccccCCCceEEeCCCCccchHhHHHHHh--cCCCCccc
Q 020673          267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLY--INATCPLC  307 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~--~~~tCPlC  307 (323)
                      |+||++.+.++.  +.++|+|.|+.+|+.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            889999988874  5889999999999999999  55779998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=9.1e-09  Score=93.41  Aligned_cols=53  Identities=32%  Similarity=0.694  Sum_probs=44.8

Q ss_pred             CCCCccccccccccCCC-------ceEEeCCCCccchHhHHHHHh--cCCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGV-------ELRELPCGHHFHCACVDKWLY--INATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~-------~lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~i~~~  314 (323)
                      .+|..|+||=..+...+       +...|.|+|.||..||+.|..  ++++||.||..+.-+
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            45689999998886555       678899999999999999975  689999999877543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.1e-08  Score=86.10  Aligned_cols=50  Identities=30%  Similarity=0.679  Sum_probs=43.3

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      -..|+|||+.|.+... .-+.|+|+|+++||+.-++....||+|++.|.++
T Consensus       131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            3789999999987743 3477999999999999999999999999987664

>smart00504 Ubox Modified RING finger domain

Probab=98.59  E-value=4.9e-08  Score=70.53  Aligned_cols=46  Identities=26%  Similarity=0.483  Sum_probs=41.6

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ..|+||.+.++++   ..+||+|.|...||.+|++.+.+||.|+.++..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4699999999987   678999999999999999999999999998754

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.58  E-value=3.3e-08  Score=66.13  Aligned_cols=38  Identities=39%  Similarity=0.989  Sum_probs=30.5

Q ss_pred             cccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccc
Q 020673          267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLC  307 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlC  307 (323)
                      |+||++-|+++   ..|+|+|.|...||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999   789999999999999999754    369988

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.58  E-value=4.2e-08  Score=73.22  Aligned_cols=49  Identities=31%  Similarity=0.686  Sum_probs=37.9

Q ss_pred             Cccccccccc-----------cCCCceEEe--CCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          265 AECCICLSAY-----------DDGVELREL--PCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       265 ~~C~ICL~~y-----------~~~~~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      +.|+||...|           ..+++....  -|+|.||..||.+||..+..||++|+.-.-
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            4566666554           356665544  399999999999999999999999987654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.57  E-value=4.3e-08  Score=67.78  Aligned_cols=42  Identities=33%  Similarity=0.786  Sum_probs=34.0

Q ss_pred             ccccccccccCCCceEEeCCC-----CccchHhHHHHHhc--CCCCcccc
Q 020673          266 ECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCK  308 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR  308 (323)
                      .|-||++ +.++++....||.     |.+|.+|+++|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4455556689986     99999999999965  45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.6e-07  Score=91.54  Aligned_cols=49  Identities=29%  Similarity=0.790  Sum_probs=39.6

Q ss_pred             CccccccccccCC---C-----------ceEEeCCCCccchHhHHHHHh-cCCCCccccccccC
Q 020673          265 AECCICLSAYDDG---V-----------ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILK  313 (323)
Q Consensus       265 ~~C~ICL~~y~~~---~-----------~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~  313 (323)
                      .+|+||+.+..-.   .           ....+||+|.||..|+.+|+. .+-.||.||.+++.
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            6899999886511   1           134569999999999999999 67799999998863

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.42  E-value=1.3e-07  Score=92.18  Aligned_cols=50  Identities=28%  Similarity=0.639  Sum_probs=43.8

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      .....|.||++.|.+.   ..+||+|.||..||..|+..+..||+||..+...
T Consensus        24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            3457999999999877   4689999999999999999888999999988653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=5.2e-08  Score=72.11  Aligned_cols=49  Identities=35%  Similarity=0.836  Sum_probs=37.4

Q ss_pred             CCcccccccccc--------CCCceEEe--CCCCccchHhHHHHHhc---CCCCcccccccc
Q 020673          264 DAECCICLSAYD--------DGVELREL--PCGHHFHCACVDKWLYI---NATCPLCKYNIL  312 (323)
Q Consensus       264 d~~C~ICL~~y~--------~~~~lr~L--PC~H~FH~~CId~WL~~---~~tCPlCR~~i~  312 (323)
                      +.+|-||..+|.        .+|..-.+  .|.|.||..||.+|+..   ++.||+||+.-.
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            348999999987        34433222  39999999999999975   467999998754

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.6e-07  Score=73.48  Aligned_cols=48  Identities=29%  Similarity=0.652  Sum_probs=36.9

Q ss_pred             CCccccccccc------------cCCCceEEeC--CCCccchHhHHHHHhcCCCCccccccc
Q 020673          264 DAECCICLSAY------------DDGVELRELP--CGHHFHCACVDKWLYINATCPLCKYNI  311 (323)
Q Consensus       264 d~~C~ICL~~y------------~~~~~lr~LP--C~H~FH~~CId~WL~~~~tCPlCR~~i  311 (323)
                      -+.|+||..-+            ...++..+--  |+|.||..||.+||+.+..||||.++-
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            46899997443            1334544443  999999999999999999999997754

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.16  E-value=1.4e-06  Score=58.53  Aligned_cols=38  Identities=34%  Similarity=0.728  Sum_probs=22.8

Q ss_pred             cccccccccCCC-ceEEeCCCCccchHhHHHHHhcC----CCCc
Q 020673          267 CCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYIN----ATCP  305 (323)
Q Consensus       267 C~ICL~~y~~~~-~lr~LPC~H~FH~~CId~WL~~~----~tCP  305 (323)
                      |+||.+ |.+++ .-..|||+|.|..+||+++++.+    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86644 45789999999999999999854    3476

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.13  E-value=9.3e-07  Score=85.64  Aligned_cols=50  Identities=34%  Similarity=0.943  Sum_probs=41.0

Q ss_pred             CCCCCccccccccccCCC-ceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          261 SNEDAECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ..|-.+|++||+.+.+.. -++...|+|.||..|+.+|  -..+||+||+--.
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence            356689999999998765 4566679999999999999  4567999998554

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.2e-06  Score=79.72  Aligned_cols=51  Identities=29%  Similarity=0.710  Sum_probs=44.1

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHH-HHhcCCC-CccccccccCCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDK-WLYINAT-CPLCKYNILKSS  315 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~i~~~~  315 (323)
                      ..|..|.||++..+..   ..+||+|.|+..||-. |-+++.. ||+||+.+..+.
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            4578999999997776   7899999999999999 9988866 999999876543

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.02  E-value=6.6e-07  Score=92.95  Aligned_cols=49  Identities=39%  Similarity=0.880  Sum_probs=37.8

Q ss_pred             CCCCccccccccccCCCceEEe-----C-CCCccchHhHHHHHhc--CCCCcccccccc
Q 020673          262 NEDAECCICLSAYDDGVELREL-----P-CGHHFHCACVDKWLYI--NATCPLCKYNIL  312 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~L-----P-C~H~FH~~CId~WL~~--~~tCPlCR~~i~  312 (323)
                      .+-.+|+||.+-..--|  |.|     | |.|-||..|+.+|++.  +.+||+||.++.
T Consensus      1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            34579999988765111  233     3 8899999999999985  578999998875

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.96  E-value=5.8e-06  Score=77.75  Aligned_cols=53  Identities=28%  Similarity=0.614  Sum_probs=40.0

Q ss_pred             CCCcccccccc-ccCCC-ceEEeCCCCccchHhHHHHHh-cCCCCccccccccCCC
Q 020673          263 EDAECCICLSA-YDDGV-ELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~-y~~~~-~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~~  315 (323)
                      ++..|++|..+ |-.++ .+..-+|+|.|+..||+..+. ....||.|+.++....
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            35689999986 54444 233337999999999999654 4568999999887654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.92  E-value=5.2e-06  Score=62.20  Aligned_cols=49  Identities=24%  Similarity=0.472  Sum_probs=39.4

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~  314 (323)
                      +.-.|+|+.+-+.|+   ..+|++|.|-..||.+|++. +.+||+|+.++...
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            346799999999999   78999999999999999998 89999999988764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=4.2e-06  Score=79.77  Aligned_cols=45  Identities=40%  Similarity=0.987  Sum_probs=36.0

Q ss_pred             CCccccccccccCCCceEEeC-CCCccchHhHHHHHhc---CCCCcccc
Q 020673          264 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI---NATCPLCK  308 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR  308 (323)
                      .+.|.||.+-+-...++.-.. |+|.||..|+..|+..   +.+||.||
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            378999944444455666666 9999999999999985   46899999

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.87  E-value=3.4e-06  Score=62.75  Aligned_cols=49  Identities=35%  Similarity=0.817  Sum_probs=24.4

Q ss_pred             CccccccccccCCCceEEe-----CCCCccchHhHHHHHhc---C--------CCCccccccccC
Q 020673          265 AECCICLSAYDDGVELREL-----PCGHHFHCACVDKWLYI---N--------ATCPLCKYNILK  313 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~L-----PC~H~FH~~CId~WL~~---~--------~tCPlCR~~i~~  313 (323)
                      .+|.||.+...+++++..+     .|++.||..|+.+||..   +        .+||.|+++|.-
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            5799999987644433222     37799999999999963   1        249999998864

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=2.1e-05  Score=74.72  Aligned_cols=52  Identities=33%  Similarity=0.708  Sum_probs=43.4

Q ss_pred             CCCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccCCCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKSSS  316 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~~~~  316 (323)
                      ++..+|.|||++-.|-   ..|||.|. .+..|-+.---+.+.||+||++|..--+
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~  340 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLE  340 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhhe
Confidence            4568999999996665   79999997 9999999976678889999999875433

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.8e-05  Score=78.20  Aligned_cols=48  Identities=29%  Similarity=0.700  Sum_probs=39.0

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-----CCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-----~tCPlCR~~i~~~  314 (323)
                      +..|+|||+...-.   ..+-|+|.|+..||-..+...     ..||+|+..|..+
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            78999999996655   344499999999999988643     5699999988763

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.2e-05  Score=73.92  Aligned_cols=45  Identities=36%  Similarity=0.827  Sum_probs=40.4

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKY  309 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  309 (323)
                      .+...|+||++.|.++   +.+||+|.|+..|+..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            4557899999999999   88999999999999999886677999993

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.72  E-value=1.2e-05  Score=75.54  Aligned_cols=48  Identities=29%  Similarity=0.732  Sum_probs=43.7

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ..|-||.+=|..+   ..+||+|.|+.-||.+.|..+..||+|+.++.+..
T Consensus        24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            5799999999888   78899999999999999999999999999887643

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.64  E-value=1.4e-05  Score=74.04  Aligned_cols=52  Identities=29%  Similarity=0.777  Sum_probs=43.7

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHh-----------------------cCCCCccccccccCCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----------------------INATCPLCKYNILKSSS  316 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~i~~~~~  316 (323)
                      -+|.|||--|.+++....++|.|.||..|+.+.|.                       ..+.||+||..|....+
T Consensus       116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            57999999999999999999999999999987661                       13469999998875443

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.63  E-value=9.9e-06  Score=83.05  Aligned_cols=50  Identities=28%  Similarity=0.551  Sum_probs=45.3

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ...|.+||..+.++.....-+|.|.||..||+.|-+.-+|||+||....+
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            36899999999999888888899999999999999999999999987654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.53  E-value=4.5e-05  Score=70.41  Aligned_cols=46  Identities=28%  Similarity=0.642  Sum_probs=41.5

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ..|-||-+-+..+   -.++|+|.|+.-||..-|..+..||+||.+-.+
T Consensus        26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            5799999998887   678899999999999999999999999987654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=4e-05  Score=73.49  Aligned_cols=52  Identities=29%  Similarity=0.798  Sum_probs=40.2

Q ss_pred             CCCCccccccccccCCC----ceEEeC-CCCccchHhHHHHH--hc-----CCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGV----ELRELP-CGHHFHCACVDKWL--YI-----NATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~i~~  313 (323)
                      ..+.+|.||++...+..    ....|| |+|.|+..||++|-  ++     +..||.||.....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            45689999999866553    134456 99999999999998  34     5679999986543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=6.5e-05  Score=72.30  Aligned_cols=47  Identities=38%  Similarity=0.937  Sum_probs=36.6

Q ss_pred             CCccccccccccCCC--ceEEeCCCCccchHhHHHHHhc--CCCCcccccc
Q 020673          264 DAECCICLSAYDDGV--ELRELPCGHHFHCACVDKWLYI--NATCPLCKYN  310 (323)
Q Consensus       264 d~~C~ICL~~y~~~~--~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~  310 (323)
                      ...|+|||+.|+-.-  .+..|.|+|.|-..||++||-+  +..||.|+..
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            357999999998443  3444559999999999999953  3569999754

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=8.7e-05  Score=68.95  Aligned_cols=49  Identities=27%  Similarity=0.577  Sum_probs=41.4

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~  314 (323)
                      .+++|.||+.+-.-+   ..|+|+|.|+-.||+.=.+. +.+||+||.+|.+.
T Consensus         6 ~~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    6 KKKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cCCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            347899999996665   68999999999999988765 56799999999764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.21  E-value=0.0001  Score=70.61  Aligned_cols=46  Identities=33%  Similarity=0.732  Sum_probs=39.3

Q ss_pred             CCccccccccccCC-CceEEeCCCCccchHhHHHHHhcC--CCCccccc
Q 020673          264 DAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYIN--ATCPLCKY  309 (323)
Q Consensus       264 d~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~  309 (323)
                      +.-|..|=+.|... +.+-.|||.|+||..|+.+.|.+|  .+||-||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            35799999988644 568889999999999999999887  56999994

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=5.4e-05  Score=71.67  Aligned_cols=51  Identities=31%  Similarity=0.584  Sum_probs=43.4

Q ss_pred             CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhc-CCCCccccccccCCCC
Q 020673          263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-NATCPLCKYNILKSSS  316 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~~  316 (323)
                      .+..|.|||+-++..   +..+ |.|-|+.+||.+=++. +.+||.||+.+..+-+
T Consensus        42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs   94 (381)
T KOG0311|consen   42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS   94 (381)
T ss_pred             hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence            457899999988776   5666 9999999999999975 7899999999877654

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00012  Score=51.05  Aligned_cols=45  Identities=31%  Similarity=0.663  Sum_probs=33.6

Q ss_pred             CccccccccccCCCceEEeCCCCc-cchHhHHHHHh-cCCCCcccccccc
Q 020673          265 AECCICLSAYDDGVELRELPCGHH-FHCACVDKWLY-INATCPLCKYNIL  312 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~-~~~tCPlCR~~i~  312 (323)
                      ++|.||.+.-.|.   ....|+|. .+-+|-.+-.+ .+..||+||.+|.
T Consensus         8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            7899998875544   34459997 66677555444 7899999999875

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00053  Score=67.14  Aligned_cols=51  Identities=33%  Similarity=0.818  Sum_probs=44.7

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ..+.+|+||...+.++   ..+||+|.|+..||++=+..+..||+||.++.+-.
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~  132 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVELP  132 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccch
Confidence            4568999999998888   67799999999999998888899999999988643

>PHA02862 5L protein; Provisional

Probab=96.90  E-value=0.00062  Score=56.93  Aligned_cols=45  Identities=29%  Similarity=0.677  Sum_probs=35.4

Q ss_pred             CccccccccccCCCceEEeCCC-----CccchHhHHHHHhc--CCCCccccccccC
Q 020673          265 AECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLCKYNILK  313 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~i~~  313 (323)
                      +.|=||.++-+++    .-||.     ..-|.+|+.+|++.  +.+||+||.++.-
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            5799999985433    36765     67999999999974  5779999998754

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.87  E-value=0.00028  Score=51.04  Aligned_cols=48  Identities=21%  Similarity=0.593  Sum_probs=23.3

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  316 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~  316 (323)
                      -.|++|-+-++++  +..-.|.|.|+..||..-+  ...||+|+.+--.++-
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~--~~~CPvC~~Paw~qD~   55 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCI--GSECPVCHTPAWIQDI   55 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGT--TTB-SSS--B-S-SS-
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhc--CCCCCCcCChHHHHHH
Confidence            4699999988776  2334599999999998833  3559999988755443

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.80  E-value=0.0006  Score=56.58  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=31.6

Q ss_pred             CccccccccccCCCceEEeCCC------CccchHhHHHHHhc
Q 020673          265 AECCICLSAYDDGVELRELPCG------HHFHCACVDKWLYI  300 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~------H~FH~~CId~WL~~  300 (323)
                      .+|+||++...+++.+..++|+      |.||.+|+.+|-+.
T Consensus        27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            6899999999997778888888      99999999999433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.74  E-value=0.00086  Score=45.84  Aligned_cols=40  Identities=30%  Similarity=0.853  Sum_probs=28.2

Q ss_pred             cccccccccCCCceEEeCCC-----CccchHhHHHHHhc--CCCCccc
Q 020673          267 CCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NATCPLC  307 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlC  307 (323)
                      |-||+++-++++ .-..||+     ..-|.+|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999877666 3457866     48999999999974  5679987

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.00066  Score=57.77  Aligned_cols=37  Identities=35%  Similarity=0.755  Sum_probs=33.0

Q ss_pred             CCcccCCCCCCccccccccccCCCceEEeCCCCccch
Q 020673          255 PNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHC  291 (323)
Q Consensus       255 ~~e~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~  291 (323)
                      .++.++..+.-+|.|||++++.++.+..|||-.+||+
T Consensus       168 YNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  168 YNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            3566777777899999999999999999999999997

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.55  E-value=0.001  Score=64.13  Aligned_cols=47  Identities=30%  Similarity=0.798  Sum_probs=39.3

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCccccccccCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKS  314 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~i~~~  314 (323)
                      .-|-||-+.   +..++.=||+|..+..|+..|-..  .++||.||.+|...
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            469999765   556788899999999999999854  68999999998654

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.47  E-value=0.0015  Score=64.24  Aligned_cols=54  Identities=30%  Similarity=0.699  Sum_probs=45.3

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  317 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~  317 (323)
                      .++..|++|.....++-..  ..|+|.|+..|+.+|+..+..||.|+.++......
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            4568899999999988322  57999999999999999999999998887665443

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.43  E-value=0.0015  Score=46.54  Aligned_cols=40  Identities=25%  Similarity=0.690  Sum_probs=28.8

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCcc
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPL  306 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPl  306 (323)
                      ..|+|.+..|+++  ++...|+|.|-++.|.++++.  +..||.
T Consensus        12 ~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   12 LKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             cCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            6899999998876  566789999999999999944  456998

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0027  Score=56.90  Aligned_cols=54  Identities=26%  Similarity=0.575  Sum_probs=43.9

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc--------CCCCccccccccCCCCc
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKYNILKSSSN  317 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~i~~~~~~  317 (323)
                      -+..|..|--....+|.+| |-|-|.||.+|+++|--.        .-.||-|..+|..+.+.
T Consensus        49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl  110 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL  110 (299)
T ss_pred             CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence            3467999999999998775 559999999999999853        23599999999876553

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.38  E-value=0.0022  Score=70.05  Aligned_cols=53  Identities=30%  Similarity=0.664  Sum_probs=44.1

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----------CCCccccccccC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----------ATCPLCKYNILK  313 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~i~~  313 (323)
                      ...|+.|-||..+--......+|.|+|+||..|.+.-|++.          -.||+|+.+|..
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            35678999999887777788899999999999999877653          259999998864

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.23  E-value=0.0038  Score=53.24  Aligned_cols=49  Identities=31%  Similarity=0.662  Sum_probs=36.3

Q ss_pred             CCCCCccccccccccCCCceEEeCCC--C---ccchHhHHHHHhc--CCCCccccccccC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNILK  313 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~i~~  313 (323)
                      +..+..|=||.++..  ++  .-||.  .   .-|.+|+++|+..  +.+||+|+++..-
T Consensus         5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            345678999998843  22  25755  4   6699999999975  4679999887654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.39  E-value=0.0062  Score=60.71  Aligned_cols=57  Identities=28%  Similarity=0.618  Sum_probs=44.0

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHh-----cCCCCccccccccCCCCccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-----INATCPLCKYNILKSSSNQDRE  321 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~i~~~~~~~~~~  321 (323)
                      .+..+|.+|-++-+|.   .+..|+|.|+.-||.+...     .|-+||.|-..+.-..++.+-+
T Consensus       534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ale  595 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALE  595 (791)
T ss_pred             cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhh
Confidence            3457899999885554   6788999999999988874     3688999988776665555443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.005  Score=63.90  Aligned_cols=48  Identities=25%  Similarity=0.609  Sum_probs=38.8

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~  315 (323)
                      -.|+.|=....|-   ....|+|.||.+||.+-+.. ...||.|..+...++
T Consensus       644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            5899998776654   44559999999999999974 678999988876654

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.0089  Score=58.02  Aligned_cols=46  Identities=30%  Similarity=0.725  Sum_probs=38.4

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcC--------CCCcccccc
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKYN  310 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~~  310 (323)
                      ..|+||.++....+-...|||+|+|++.|....+.+.        -.||-++.+
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            6899999998877888999999999999999999642        248877553

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.28  E-value=0.0069  Score=47.94  Aligned_cols=33  Identities=27%  Similarity=0.804  Sum_probs=28.0

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHH
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVD  295 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId  295 (323)
                      .++..|++|-..+.+ ......||+|.||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            445779999999987 567788999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.08  E-value=0.0079  Score=52.97  Aligned_cols=44  Identities=25%  Similarity=0.547  Sum_probs=39.3

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI  311 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i  311 (323)
                      ..|.||-.+|+.+   ..+.|+|+|+..|.-+=++...+|-+|-+..
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            4899999999998   6778999999999999899999999997654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.04  E-value=0.013  Score=40.13  Aligned_cols=44  Identities=25%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             cccccccccCCCceEEeC--CCCccchHhHHHHHh-cCCCCccccccc
Q 020673          267 CCICLSAYDDGVELRELP--CGHHFHCACVDKWLY-INATCPLCKYNI  311 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~i  311 (323)
                      |++|.+++. ......+|  |++.....|...=++ .+..||-||.++
T Consensus         1 cp~C~e~~d-~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELD-ETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccc-cCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            788999983 33335566  667778888666665 367899999875

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.86  E-value=0.012  Score=61.60  Aligned_cols=52  Identities=33%  Similarity=0.676  Sum_probs=38.7

Q ss_pred             CCCCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC-------CCCccccccc
Q 020673          260 LSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN-------ATCPLCKYNI  311 (323)
Q Consensus       260 ~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~-------~tCPlCR~~i  311 (323)
                      ++.+..+|.||.+.+...+.+=.-. |-|+||..||.+|-+..       =.||-|++..
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            3445679999999988776543333 77999999999998642       1499998543

>PHA03096 p28-like protein; Provisional

Probab=94.78  E-value=0.014  Score=54.83  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=32.2

Q ss_pred             CccccccccccCC----CceEEeC-CCCccchHhHHHHHhc---CCCCcccc
Q 020673          265 AECCICLSAYDDG----VELRELP-CGHHFHCACVDKWLYI---NATCPLCK  308 (323)
Q Consensus       265 ~~C~ICL~~y~~~----~~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR  308 (323)
                      .+|.||++...+.    ..-..|| |+|.|+..||..|-..   +.+||.|+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            6899999886543    2344688 9999999999999864   23444443

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.30  E-value=0.013  Score=55.50  Aligned_cols=49  Identities=29%  Similarity=0.547  Sum_probs=39.3

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ...|.+|-.=+-|..  ...-|-|.|++.||.+-|..+.+||.|.-.|.+.
T Consensus        15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            468999977666664  2234999999999999999999999998766543

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=0.015  Score=54.19  Aligned_cols=47  Identities=26%  Similarity=0.441  Sum_probs=41.6

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ..|-||-..|.++   ..+.|+|+|+..|--+=++....|++|-+.+-..
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence            4699999999998   6888999999999999999999999998876543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=0.003  Score=60.74  Aligned_cols=51  Identities=24%  Similarity=0.619  Sum_probs=46.2

Q ss_pred             CccccccccccCC-CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          265 AECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ..|+||-..|... +.+..+-|+|.+|.+|+.+||.....||.|++.+....
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            4699999999988 88899999999999999999999999999999887653

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.035  Score=52.96  Aligned_cols=50  Identities=26%  Similarity=0.592  Sum_probs=42.4

Q ss_pred             CCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       260 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ...||..|+||...   +-.-...||+|.=+..||.+-|.+++.|=.||..+.
T Consensus       418 p~sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  418 PDSEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCcccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            33688999999766   333467899999999999999999999999998776

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.068  Score=49.45  Aligned_cols=50  Identities=28%  Similarity=0.501  Sum_probs=38.7

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCcccccccc
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNIL  312 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~i~  312 (323)
                      ...+.+|++|=+.=..+  -...||+|.|+-.||..=+.-  ..+||.|-.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34568999998774444  345679999999999987653  468999988876

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=93.78  E-value=0.048  Score=51.44  Aligned_cols=50  Identities=30%  Similarity=0.680  Sum_probs=39.0

Q ss_pred             CCccccccccccCCCc-eEEeCCC-----CccchHhHHHHHh--cCCCCccccccccC
Q 020673          264 DAECCICLSAYDDGVE-LRELPCG-----HHFHCACVDKWLY--INATCPLCKYNILK  313 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~i~~  313 (323)
                      +..|-||..+...... .-+.||.     +..|..|+++|+.  .+.+|.+|++....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            5789999998665432 4577876     7789999999998  56779999886543

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.34  E-value=0.085  Score=45.05  Aligned_cols=37  Identities=30%  Similarity=0.595  Sum_probs=24.1

Q ss_pred             CCCccccccccccCCCc---------eEEeCCC-CccchHhHHHHHh
Q 020673          263 EDAECCICLSAYDDGVE---------LRELPCG-HHFHCACVDKWLY  299 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~---------lr~LPC~-H~FH~~CId~WL~  299 (323)
                      ||+.|+|||+-=.+...         .|-.-|+ -.=|..|+|+.-+
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            56899999987544411         2222354 3569999999764

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.19  E-value=0.1  Score=47.60  Aligned_cols=53  Identities=15%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ....|++|.+.+.+...+..|. |+|+|..+|+.+..+....||+|-.++.+.+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            4578999999999999988885 9999999999999998999999988776543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=0.079  Score=50.80  Aligned_cols=45  Identities=27%  Similarity=0.576  Sum_probs=33.6

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      -+..|.||+++..+   ...+||+|.=+  |..- -+...+||+||+.|..
T Consensus       304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence            34679999999776   47899999844  5554 3345669999998753

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.52  E-value=0.059  Score=50.40  Aligned_cols=45  Identities=29%  Similarity=0.748  Sum_probs=35.3

Q ss_pred             CccccccccccCCCceEEeC-CCCccchHhHHHHHhc-CCCCccc-ccccc
Q 020673          265 AECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYI-NATCPLC-KYNIL  312 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~-~~tCPlC-R~~i~  312 (323)
                      ..|+.|-.-..+.   ..+| |+|.|+.+||..-|.. ...||.| |++|.
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            5799988777666   4568 8899999999988764 5789999 44543

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=92.17  E-value=0.21  Score=47.44  Aligned_cols=50  Identities=22%  Similarity=0.521  Sum_probs=39.3

Q ss_pred             cCCCCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCccccccc
Q 020673          259 VLSNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNI  311 (323)
Q Consensus       259 ~~~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i  311 (323)
                      .++.+...|++|+..-.++   ..+. =+-+|+-.||-+.+...+.||+=-.+.
T Consensus       295 ~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  295 LLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             cCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            3455668999999997766   3444 478999999999999999999865543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.16  E-value=0.048  Score=37.05  Aligned_cols=33  Identities=21%  Similarity=0.549  Sum_probs=23.7

Q ss_pred             EeCCC-CccchHhHHHHHhcCCCCccccccccCC
Q 020673          282 ELPCG-HHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       282 ~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ...|+ |..+..|+..-|.++..||+|+.+++.+
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            45687 9999999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.53  E-value=0.12  Score=44.86  Aligned_cols=35  Identities=34%  Similarity=0.786  Sum_probs=27.6

Q ss_pred             EeCCCCccchHhHHHHHhc-----------CCCCccccccccCCCC
Q 020673          282 ELPCGHHFHCACVDKWLYI-----------NATCPLCKYNILKSSS  316 (323)
Q Consensus       282 ~LPC~H~FH~~CId~WL~~-----------~~tCPlCR~~i~~~~~  316 (323)
                      -..|+.-||.-|+..||+.           -..||.|-.+|.-+.+
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS  232 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS  232 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence            3569999999999999963           1359999999876543

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.30  E-value=0.099  Score=48.84  Aligned_cols=45  Identities=29%  Similarity=0.649  Sum_probs=38.3

Q ss_pred             CccccccccccCCC-ceEEeCCCCccchHhHHHHHhcCCCCccccc
Q 020673          265 AECCICLSAYDDGV-ELRELPCGHHFHCACVDKWLYINATCPLCKY  309 (323)
Q Consensus       265 ~~C~ICL~~y~~~~-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  309 (323)
                      ..|+||.+.+.+.. .+..+||+|.-|..|..+-...+-+||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            34999998876554 4678999999999999998888899999988

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.08  E-value=0.054  Score=50.53  Aligned_cols=44  Identities=30%  Similarity=0.724  Sum_probs=32.6

Q ss_pred             CCCccccccccccCCCceEEeCCCCcc-chHhHHHHHhcCCCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHF-HCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~F-H~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ++.-|+||++.   +-....|+|+|.- +.+|-..    -+.||+||+-|.+
T Consensus       299 ~~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  299 TRRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence            36789999998   4456899999964 4556433    4589999987754

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.41  E-value=0.11  Score=34.68  Aligned_cols=41  Identities=24%  Similarity=0.647  Sum_probs=21.5

Q ss_pred             cccccccccCCCceEEeCCCCccchHhHHHHHhcCC--CCccc
Q 020673          267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA--TCPLC  307 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~--tCPlC  307 (323)
                      |.+|-+-...|+....-.|+=.+|..|+++.++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            455555555553322224888899999999998654  79987

; PDB: 3NW0_A 2CT0_A.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=89.81  E-value=0.27  Score=51.72  Aligned_cols=54  Identities=22%  Similarity=0.569  Sum_probs=40.8

Q ss_pred             CCCCCccccccccccCCCceEEeCCC-----CccchHhHHHHHhcC--CCCccccccccCCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS  315 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~i~~~~  315 (323)
                      .+++..|-||..+=..++++ --||+     -.-|.+|+-+|+.-+  ..|-+|++++.-++
T Consensus         9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            45668999999886666554 34665     579999999999854  45999999876543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.61  E-value=0.52  Score=45.12  Aligned_cols=47  Identities=34%  Similarity=0.848  Sum_probs=35.7

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHH--HhcCCCCcccccc
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKW--LYINATCPLCKYN  310 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~  310 (323)
                      .++...|-||-....   ..-.+||+|..+--|--+-  |-....||+||.+
T Consensus        58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            345578999987743   3478999999888887553  4467889999975

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.39  E-value=0.25  Score=46.47  Aligned_cols=47  Identities=34%  Similarity=0.674  Sum_probs=38.7

Q ss_pred             CccccccccccCCC---ceEEeCCCCccchHhHHHHHhcC-CCCccccccc
Q 020673          265 AECCICLSAYDDGV---ELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNI  311 (323)
Q Consensus       265 ~~C~ICL~~y~~~~---~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i  311 (323)
                      .+|-||=++|..++   --|.|.|+|.|...|+.+-+... ..||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            47999999998764   35677799999999999877654 5699999984

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.38  E-value=0.18  Score=45.28  Aligned_cols=40  Identities=25%  Similarity=0.594  Sum_probs=29.3

Q ss_pred             cccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673          267 CCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       267 C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      |-.|-+.   +..+..|||+|+ ++..|=+.    -.+||+|+.....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            7777655   666889999976 77778554    4559999886543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.17  E-value=0.27  Score=50.54  Aligned_cols=51  Identities=33%  Similarity=0.855  Sum_probs=41.9

Q ss_pred             CCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673          260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  317 (323)
Q Consensus       260 ~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~  317 (323)
                      +.+....|.||+.+.    ..|..+|.   |..|+.+|+..+..||+|...+..++..
T Consensus       475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~  525 (543)
T KOG0802|consen  475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFL  525 (543)
T ss_pred             hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccccc
Confidence            334567899999997    55788899   9999999999999999998877665443

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=86.85  E-value=0.35  Score=34.04  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=33.0

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ..|-.|...   +..-..+||+|.-...|-+.+  +-+-||+|-.++...+
T Consensus         8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence            345555544   333478999999999997763  5577999998886543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=86.55  E-value=1.3  Score=43.04  Aligned_cols=28  Identities=25%  Similarity=0.821  Sum_probs=21.3

Q ss_pred             CCCccchHhHHHHHhc-------------CCCCcccccccc
Q 020673          285 CGHHFHCACVDKWLYI-------------NATCPLCKYNIL  312 (323)
Q Consensus       285 C~H~FH~~CId~WL~~-------------~~tCPlCR~~i~  312 (323)
                      |.-..+.+|+.+|+-.             +.+||.||+...
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            4467788999999832             457999998754

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.52  E-value=0.35  Score=51.18  Aligned_cols=42  Identities=26%  Similarity=0.720  Sum_probs=32.8

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI  311 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i  311 (323)
                      ..|..|--..+-+.  .-.-|+|.||..|+.   .....||-|+-+.
T Consensus       841 skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchhh
Confidence            58999988866652  344599999999998   5567899998743

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=86.40  E-value=0.24  Score=46.65  Aligned_cols=44  Identities=27%  Similarity=0.578  Sum_probs=30.0

Q ss_pred             ccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      .|--|=-.  ..-.-|..||+|+|+.+|-..  ..-+.||+|-..|..
T Consensus        92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen   92 FCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR  135 (389)
T ss_pred             eecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence            45555333  333458899999999999654  335689999776643

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.87  E-value=0.39  Score=51.07  Aligned_cols=36  Identities=25%  Similarity=0.552  Sum_probs=28.5

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHH
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL  298 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL  298 (323)
                      ..+..|.+|-..+... .-..-||+|.||.+||.+-.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            3456899998887655 55678999999999998754

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.95  E-value=0.26  Score=50.62  Aligned_cols=44  Identities=34%  Similarity=0.588  Sum_probs=34.0

Q ss_pred             CccccccccccCCCc-eEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673          265 AECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYINATCPLCKYNI  311 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i  311 (323)
                      ..|.||+..|..... -+-|-|+|.-+..|+..  ..|++|| |+++=
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De   56 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDE   56 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccc
Confidence            569999999876653 34455999999999987  4578899 77653

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=84.38  E-value=1.8  Score=30.43  Aligned_cols=43  Identities=28%  Similarity=0.739  Sum_probs=34.1

Q ss_pred             CCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCcc--cccc
Q 020673          264 DAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPL--CKYN  310 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPl--CR~~  310 (323)
                      ...|.+|-+.|.+++.+.+-| |+--+|.+|-++    ...|-.  |..+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            357999999999888888888 999999999554    556654  5443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=84.13  E-value=0.47  Score=49.96  Aligned_cols=47  Identities=32%  Similarity=0.650  Sum_probs=37.5

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhc--CCCCccccccccCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~i~~~~  315 (323)
                      ..|.||++    .+.....+|+|.|+.+|+.+=+..  +..||+||..+.+..
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999    445578889999999999887754  356999998776543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=83.73  E-value=1.3  Score=41.11  Aligned_cols=52  Identities=17%  Similarity=0.406  Sum_probs=41.3

Q ss_pred             CCCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      .....|+|...+|........| ||+|+|-..++++- +....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence            3457899999999776666666 79999999999996 3456799998876643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.61  E-value=0.82  Score=47.96  Aligned_cols=26  Identities=31%  Similarity=0.708  Sum_probs=22.8

Q ss_pred             EEeCCCCccchHhHHHHHhcCCCCcc
Q 020673          281 RELPCGHHFHCACVDKWLYINATCPL  306 (323)
Q Consensus       281 r~LPC~H~FH~~CId~WL~~~~tCPl  306 (323)
                      ....|.|.-|..|..+|+.+...||.
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCcCCC
Confidence            34568999999999999999999984

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=82.29  E-value=0.32  Score=50.68  Aligned_cols=49  Identities=37%  Similarity=0.649  Sum_probs=40.1

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC---CCCccccccccCCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKSS  315 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~i~~~~  315 (323)
                      ..+|.||+..|.++   ..+.|.|.|...|+-.=+...   ..||+|+..+.+.+
T Consensus        21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s   72 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS   72 (684)
T ss_pred             hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence            36899999999998   567899999999988766543   56999998776654

>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins

Probab=81.79  E-value=13  Score=30.09  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=18.2

Q ss_pred             HHHhcCCCCccccccccCCCCcccc
Q 020673          296 KWLYINATCPLCKYNILKSSSNQDR  320 (323)
Q Consensus       296 ~WL~~~~tCPlCR~~i~~~~~~~~~  320 (323)
                      +-+.+...|+.|++++.-..+....
T Consensus        80 KmLGr~D~CM~C~~pLTLd~~legk  104 (114)
T PF11023_consen   80 KMLGRVDACMHCKEPLTLDPSLEGK  104 (114)
T ss_pred             hhhchhhccCcCCCcCccCchhhcc
Confidence            3456677899999999876665543

; GO: 0005887 integral to plasma membrane

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=81.79  E-value=0.47  Score=52.41  Aligned_cols=46  Identities=35%  Similarity=0.806  Sum_probs=38.6

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccc
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI  311 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i  311 (323)
                      -..|.||++...+.-  ....|+|.+++.|...|+..+..||.|+...
T Consensus      1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence            358999999988432  4566999999999999999999999998644

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.29  E-value=0.9  Score=41.84  Aligned_cols=52  Identities=23%  Similarity=0.647  Sum_probs=36.4

Q ss_pred             CCCccccccccccCCCce-EEeCCC-----CccchHhHHHHHhcCC--------CCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVEL-RELPCG-----HHFHCACVDKWLYINA--------TCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~l-r~LPC~-----H~FH~~CId~WL~~~~--------tCPlCR~~i~~~  314 (323)
                      .+..|=||+..=+|+-.- =+-||.     |=-|..|+..|...+.        +||-|+.++...
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv   84 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV   84 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence            346788999885554321 234764     8899999999996432        499999877543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		9e-09
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		9e-09
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-06
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		6e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		6e-04
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		8e-04

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           +C ICLS  ++G ++R LPC H FH  CVD+WL  N  CP+C+ +I
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 254 TPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313
            PN H   +E   C +C+  ++    LR LPC H FH  CVDKWL  N TCP+C+ +   
Sbjct: 15  NPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72
Query: 314 SS 315
           SS
Sbjct: 73  SS 74

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 262 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 312
           ++  EC +CL+  +DG E R LP CGH FH  CVD WL  ++TCPLC+  ++
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 251 GTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYN 310
           G+    EHV S    EC +C   Y  G  +R+LPC H FH +C+  WL  + +CP+C+ +
Sbjct: 4   GSSGTEEHVGSG--LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 311 I 311
           +
Sbjct: 62  L 62

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 257 EHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
           +H    ++  C IC S Y  G    ELPC H+FH  CV  WL  + TCP+C+
Sbjct: 33  DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 267 CCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK 313
           C +CL  +    EL   PC H FH  C+ KWL +   CPLC   +L+
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 205 YAVADQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNED 264
           +A+ ++   SK+D E + + K + +  T++  +  Q  +  +++          VL NE 
Sbjct: 12  WALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMND------VLENE- 64
Query: 265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
            +C IC   + + V L    C H F   C+++W+     CP+C+ +I
Sbjct: 65  LQCIICSEYFIEAVTLN---CAHSFCSYCINEWMKRKIECPICRKDI 108

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           ++ ECCIC+    D +    LPC H F   C+DKW   +  CP+C+  +
Sbjct: 14  DEEECCICMDGRADLI----LPCAHSFCQKCIDKWSDRHRNCPICRLQM 58

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 212 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 271
             SK+D E + + K + +  T++  +  Q  +  +++          VL NE  +C IC 
Sbjct: 8   NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMND------VLENE-LQCIICS 60
Query: 272 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
             + + V L    C H F   C+++W+     CP+C+ +I
Sbjct: 61  EYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDI 97

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 212 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 271
             SK+D E + + K + +  T++  +  Q  +  +++          VL NE  +C IC 
Sbjct: 8   NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMND------VLENE-LQCIICS 60
Query: 272 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
             + + V L    C H F   C+++W+     CP+C+ +I
Sbjct: 61  EYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDI 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-27
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	8e-26
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	8e-23
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-21
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-20
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	4e-14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-12
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	9e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-09
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	5e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	8e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	9e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	8e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	9e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	5e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-06
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	6e-06
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	6e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	7e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	3e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	9e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-04
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	7e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	7e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  101 bits (254), Expect = 1e-27
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 29/103 (28%)

Query: 213 ASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLS 272
            S     +L  ++F                             N +   +E   C +C+ 
Sbjct: 1   GSSGSSGQLPSYRF-----------------------------NPNNHQSEQTLCVVCMC 31

Query: 273 AYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315
            ++    LR LPC H FH  CVDKWL  N TCP+C+ +   SS
Sbjct: 32  DFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 98.6 bits (246), Expect = 2e-26
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 257 EHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS 316
           E    + + +C ICLS  ++G ++R LPC H FH  CVD+WL  N  CP+C+ +I     
Sbjct: 7   EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66

Query: 317 NQ 318
           ++
Sbjct: 67  SE 68

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 97.1 bits (242), Expect = 8e-26
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQD 319
            N    C +CL  +    EL   PC H FH  C+ KWL +   CPLC   +L+ +    
Sbjct: 12  LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 88.4 bits (220), Expect = 8e-23
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 261 SNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 312
            ++  EC +CL+  +DG E R LP CGH FH  CVD WL  ++TCPLC+  ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 28/100 (28%)

Query: 212 GASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICL 271
            ASKE I+ L +                                 +H    ++  C IC 
Sbjct: 16  PASKESIDALPEILVTE----------------------------DHGAVGQEMCCPICC 47

Query: 272 SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           S Y  G    ELPC H+FH  CV  WL  + TCP+C+   
Sbjct: 48  SEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 82.1 bits (203), Expect = 3e-20
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 251 GTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYN 310
           G+    EHV      EC +C   Y  G  +R+LPC H FH +C+  WL  + +CP+C+ +
Sbjct: 4   GSSGTEEHV--GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61

Query: 311 ILKSSSNQD 319
           +   ++  +
Sbjct: 62  LTGQNTATN 70

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317
           ++ ECCIC+    DG     LPC H F   C+DKW   +  CP+C+  +  ++ +
Sbjct: 14  DEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           ++     C ICL    +      LPC H F   C+ +W+  N TCPLCK  +
Sbjct: 1   MATVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 64.2 bits (157), Expect = 6e-14
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 261 SNEDAECCICLSAYDDGVEL-RELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           S+  + C ICL        +   LPCGH  H  C ++ L     CPLC    
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 59.9 bits (145), Expect = 3e-12
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 251 GTETPNEHVLSNEDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPL 306
            + +    +  +    C IC+  Y + V+         CGH F   C+   L    TCP 
Sbjct: 2   SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61

Query: 307 CKYNI 311
           C+  I
Sbjct: 62  CRKKI 66

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 64.5 bits (156), Expect = 9e-12
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 16/78 (20%)

Query: 250 CGTETPNEHVLSNEDAECCICLSAYDDGVELRE-----LPCGHHFHCACVDKWL------ 298
             ++ P      NE+  C IC +   DG E+         C    H  C+++W       
Sbjct: 294 DWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDG 353

Query: 299 -----YINATCPLCKYNI 311
                     CP CK  +
Sbjct: 354 KTFLEVSFGQCPFCKAKL 371

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 56.8 bits (137), Expect = 5e-11
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 261 SNEDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315
            +    C IC+  Y + V+         CGH F   C+   L    TCP C+  I    
Sbjct: 7   PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 263 EDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPLCKYNILKSS 315
               C IC+  Y + V+         CGH F   C+   L    TCP C+  I    
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           S    EC ICL      V L   PC H F   CV    ++   C LC+  I
Sbjct: 12  SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVKGASWLGKRCALCRQEI 59

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 261 SNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLC 307
                 C  C +       +     C H FH  C+  W+  N  CPLC
Sbjct: 23  VQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.5 bits (121), Expect = 8e-09
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS 314
                C IC     D   +    C H F  +C+ +  Y +  CP C   + ++
Sbjct: 13  TPYILCSICKGYLIDATTI--TECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 52.7 bits (126), Expect = 9e-09
 Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 209 DQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECC 268
            +  A  E++ R  K     +    K  +  +  +  +  +      + + +   + +C 
Sbjct: 9   QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCI 68

Query: 269 ICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN 317
           IC   + + V L    C H F   C+++W+     CP+C+ +I   + +
Sbjct: 69  ICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
                C IC  A+ + V      C H+F  +C  +       C +C 
Sbjct: 13  EIPFRCFICRQAFQNPVVT---KCRHYFCESCALEHFRATPRCYICD 56

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQ 318
           N    C +C   + D   +  + C H F   C+ ++L  +  CP+C   + K+    
Sbjct: 13  NPHLMCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLL 67

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.7 bits (116), Expect = 9e-08
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS 315
            E   C IC+    D        C      +C+ +WL    A CP C+  +    
Sbjct: 20  AEVFRCFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 15/91 (16%)

Query: 238 DGQGSQGGIMTECGTETPNEHVLSNEDAE-----------CCICLSAYDDGVELRELPCG 286
           DG+     +   C     +   ++ E  E           C IC     D       PCG
Sbjct: 295 DGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIE---PCG 351

Query: 287 HHFHCACVDKWLYI-NATCPLCKYNILKSSS 316
           H    +C+  W       CP C+  I  +  
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCK 308
            C IC S    G       CG   H  CV K+        CP C 
Sbjct: 17  ICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 20/82 (24%)

Query: 257 EHVLSNEDAECCICL---------------SAYDDGVELRELPCGHHFHCACVDKWL--- 298
           E +    + +C IC+                A    V  R   C H FH  C+       
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 299 --YINATCPLCKYNILKSSSNQ 318
               +  CP CK    + +  Q
Sbjct: 78  NKDGSLQCPSCKTIYGEKTGTQ 99

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 260 LSNEDAECCICLSAYDDGVELRE----LPCGHHFHCACVDKWLYINATCPLCKYNI 311
           + +    C IC+  Y + V+         CGH F   C+   L    TCP C+  I
Sbjct: 3   MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
           ++   C IC   ++  + + +  C H++   C+ K+L     CP C 
Sbjct: 20  DDLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTCC 64

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 254 TPNEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNIL 312
            P + + S  + +C IC+    + V L   PC H     C    +   +  CP C+  + 
Sbjct: 5   LPKDAIPSLSECQCGICMEILVEPVTL---PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61

Query: 313 KSSSNQDREE 322
             +    R  
Sbjct: 62  SWTRYHTRRN 71

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 263 EDAECCICL---------------SAYDDGVELRELPCGHHFHCACVDKWLYINATCPLC 307
               C IC                SA  +   +    C H FH  C+ +WL     CPL 
Sbjct: 47  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 267 CCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLC 307
           C    ++            C H FH  C+ +WL     CPL 
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKSSS 316
           +   C  C       V      C H+    C+ +       +CP C++++ ++  
Sbjct: 77  QSFMCVCCQELVYQPVTT---ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI 128

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCK 308
           +   C  C +   + V L    C H F   CV     I   CP+C 
Sbjct: 21  KLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC--IGTGCPVCY 62

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 251 GTETPNEHVLSNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYI--NAT 303
            + +    +  +    C IC    DD   L   PC      H  H AC+ +W+       
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRC 60

Query: 304 CPLCKY 309
           C LCKY
Sbjct: 61  CELCKY 66

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCK 308
           E  +C  C       +      C H+    C+D+       +CP C+
Sbjct: 51  ETFQCICCQELVFRPITT---VCQHNVCKDCLDRSFRAQVFSCPACR 94

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKSSSNQDR 320
               EC ICL A  + V+    PCGH F  AC+ K +      CP+    +L++    D 
Sbjct: 16  ESKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILKSSS 316
           + +  C ICL    + +  +E  C H F   C+   L   N  CP C+  ++   S
Sbjct: 52  HSELMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 261 SNEDAECCICLSAYDDGVELRELPCGHHFHC-ACVDKWLYINATCPLCKYNI 311
            N    C +C     DG  +     GH   C  C  +     A+CP+CK  I
Sbjct: 4   QNLLKPCSLCEKRPRDGNIIH-GRTGHLVTCFHCARRLKKAGASCPICKKEI 54

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL-YINATCPLCKYNILK 313
           +  +C  C        +     CGH F  +C+   L   +  C  C+ +I+K
Sbjct: 14  DKYKCEKCHLVLCSPKQT---ECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 256 NEHVLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--NATCPLCK 308
                 +    C IC S    G       CG   H  CV K+        CP C 
Sbjct: 172 IRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCN 224

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS 314
           +   C IC     D VE     C H F   C+ + L +  + CP C+Y    +
Sbjct: 22  KSISCQICEHILADPVET---SCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKSSSNQDR 320
              EC ICL A  + V+    PCGH F  AC+ K +      CP+    +L++    D 
Sbjct: 17  SKYECPICLMALREAVQT---PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 263 EDAECCICLSAYDDGVEL-RELPCGHHFHCACVDKWLYINA---TCPLCK 308
           E  EC IC+ ++ +     + L CGH     C++K L  +     CP C 
Sbjct: 14  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHC-ACVDKWLYINATCPLCKYNI 311
           N    C IC     +G  +     GH   C  C  K    N  CP+C+  I
Sbjct: 6   NAIEPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 263 EDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWLYIN-ATCPLCKYNILKSS 315
           +D  C  C +       L+ +   CGH    +CVD         CP C   + KS+
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL---YINATCPLCK 308
           +  EC ICL    + V      C H F   C+ K L      + CPLCK
Sbjct: 20  KILECPICLELIKEPVST---KCDHIFCKFCMLKLLNQKKGPSQCPLCK 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.71
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.68
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.6
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.59
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.59
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.58
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.53
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.49
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.49
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.47
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.46
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.45
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.43
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.42
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.38
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.38
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.37
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.37
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.35
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.33
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.32
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.31
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.29
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.24
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.23
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.21
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.21
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.21
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.19
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.18
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.16
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.16
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.15
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.15
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.14
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.1
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.09
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.07
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.03
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.99
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.99
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.98
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.96
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.95
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.91
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.89
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.89
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.88
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.84
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.84
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.82
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.81
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.79
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.79
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.76
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.76
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.74
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.7
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.64
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.53
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.51
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.44
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.36
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.3
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.21
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.2
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.72
3nw0_A	238	Non-structural maintenance of chromosomes element	97.62
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.59
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.32
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.67
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	89.68
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	88.71
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	87.34
1we9_A	64	PHD finger family protein; structural genomics, PH	87.34
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	87.13
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	86.6
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	84.62
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	84.52
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	84.16
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	83.43
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	83.11
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	82.91
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	80.57
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	80.55

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.71  E-value=5.5e-18  Score=131.39  Aligned_cols=77  Identities=35%  Similarity=0.645  Sum_probs=65.9

Q ss_pred             hccCCCHHHHhhcccceeeeccccccCcCCCCCCCCCcccccCCCCCCcccCCCCCCccccccccccCCCceEEeCCCCc
Q 020673          209 DQEGASKEDIERLSKFKFRRMVDTEKLSDDGQGSQGGIMTECGTETPNEHVLSNEDAECCICLSAYDDGVELRELPCGHH  288 (323)
Q Consensus       209 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~  288 (323)
                      ...|++++.+++||.+++......                            ..++.+|+||+++|.+++.++.|||+|.
T Consensus        13 ~~~~~s~~~i~~lp~~~~~~~~~~----------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~   64 (91)
T 2l0b_A           13 ANPPASKESIDALPEILVTEDHGA----------------------------VGQEMCCPICCSEYVKGDVATELPCHHY   64 (91)
T ss_dssp             CCCCCCHHHHHTSCEEECCTTCSS----------------------------SSSCSEETTTTEECCTTCEEEEETTTEE
T ss_pred             CCCCCCHHHHHhCCCeeecccccc----------------------------cCCCCCCcccChhhcCCCcEEecCCCCh
Confidence            357999999999999887643211                            1345789999999999999999999999


Q ss_pred             cchHhHHHHHhcCCCCccccccccC
Q 020673          289 FHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       289 FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ||..||++|++.+.+||+||+.+..
T Consensus        65 Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           65 FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            9999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=7.7e-18  Score=125.59  Aligned_cols=53  Identities=45%  Similarity=1.014  Sum_probs=49.0

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+||+++....
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS   74 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence            45789999999999999999999999999999999999999999999987653

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=113.30  Aligned_cols=56  Identities=36%  Similarity=0.812  Sum_probs=50.8

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  317 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~  317 (323)
                      .++.+|+||++.|.+++.++.|||+|.||..||++|++.+.+||+||+++......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence            45679999999999999999999999999999999999999999999999765543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=111.20  Aligned_cols=56  Identities=41%  Similarity=1.012  Sum_probs=50.3

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  316 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~  316 (323)
                      ..++..|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+.....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            34567899999999999899999999999999999999999999999999876543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.59  E-value=5.5e-16  Score=108.28  Aligned_cols=50  Identities=50%  Similarity=1.194  Sum_probs=46.6

Q ss_pred             CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCcccccccc
Q 020673          263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ++.+|+||+++|.+++....+| |+|.||..||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4578999999999999999998 9999999999999999999999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.58  E-value=2e-15  Score=113.03  Aligned_cols=57  Identities=32%  Similarity=0.828  Sum_probs=51.1

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  317 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~  317 (323)
                      ..++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||..+......
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence            345679999999999999999999999999999999999999999999999775543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.2e-15  Score=112.63  Aligned_cols=52  Identities=31%  Similarity=0.657  Sum_probs=43.3

Q ss_pred             CCCCccccccccccC-----------CCceEEeC-CCCccchHhHHHHHhcCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDD-----------GVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~-----------~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      .++.+|+||+++|.+           ++.++.+| |+|.||.+||++||+.+.+||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            355678888888854           45577776 99999999999999999999999998764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.49  E-value=1.7e-14  Score=100.52  Aligned_cols=50  Identities=34%  Similarity=0.690  Sum_probs=44.1

Q ss_pred             CCCccccccccccCC-CceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          263 EDAECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~-~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ++.+|+||++.|.++ +..+.+||+|.||..||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            457899999999765 45788899999999999999999999999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.49  E-value=1.9e-14  Score=115.48  Aligned_cols=56  Identities=25%  Similarity=0.473  Sum_probs=45.8

Q ss_pred             CCCccccccccccCCC---------------ceEEeCCCCccchHhHHHHH-----hcCCCCccccccccCCCCcc
Q 020673          263 EDAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWL-----YINATCPLCKYNILKSSSNQ  318 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~---------------~lr~LPC~H~FH~~CId~WL-----~~~~tCPlCR~~i~~~~~~~  318 (323)
                      .+.+|+|||++|.++.               .++.+||+|.||..||++|+     +.+.+||+||..+.....++
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q   99 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ   99 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence            3468999999997653               44578999999999999999     45779999999987665543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.9e-14  Score=107.88  Aligned_cols=54  Identities=33%  Similarity=0.779  Sum_probs=46.2

Q ss_pred             CCCCCccccccccccCCCceEEeCCC-----CccchHhHHHHHhcC--CCCccccccccCCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCG-----HHFHCACVDKWLYIN--ATCPLCKYNILKSS  315 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~i~~~~  315 (323)
                      +.++..|.||+++|++++.+ .+||+     |.||.+||++||+.+  .+||+||+++....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            45567899999999988776 69997     999999999999875  48999999987544

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.2e-14  Score=102.87  Aligned_cols=52  Identities=29%  Similarity=0.643  Sum_probs=45.6

Q ss_pred             CCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      .++.+|+||++.|.+.    +.+..+||+|.||..||++|++.+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4568899999999864    345788999999999999999999999999998864

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.45  E-value=4.4e-14  Score=112.50  Aligned_cols=51  Identities=27%  Similarity=0.541  Sum_probs=44.1

Q ss_pred             CCCCccccccccccCC---------------CceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          262 NEDAECCICLSAYDDG---------------VELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~---------------~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      .++..|+||++.|++.               ..++.+||+|.||..||++||+.+.+||+||++..
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            3567899999999865               13677899999999999999999999999999853

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.43  E-value=4e-14  Score=103.77  Aligned_cols=54  Identities=28%  Similarity=0.618  Sum_probs=47.1

Q ss_pred             CCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          262 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      .++.+|+||++.|.+.    +....+||+|.||..||++|++.+.+||+||.++....
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            4567899999999764    55678899999999999999999999999999987654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.42  E-value=5.4e-14  Score=100.74  Aligned_cols=53  Identities=28%  Similarity=0.610  Sum_probs=46.2

Q ss_pred             CCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          263 EDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ++.+|+||++.|.++    +....+||+|.||.+||++|++.+.+||+||.++...+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            457899999999864    45678999999999999999999999999999987653

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.5e-13  Score=100.64  Aligned_cols=51  Identities=35%  Similarity=0.989  Sum_probs=45.4

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSS  316 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~  316 (323)
                      .++..|+||++.+.+    ..+||+|.||..||++|++.+.+||+||+++.....
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            456789999999887    789999999999999999999999999999886543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.38  E-value=1.8e-13  Score=99.54  Aligned_cols=50  Identities=36%  Similarity=0.806  Sum_probs=43.9

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      .++.+|+||++.+.++  ...+||+|.||..|+.+|++.+.+||+||.++..
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3457899999998764  4788999999999999999999999999998864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=2.2e-13  Score=100.18  Aligned_cols=49  Identities=33%  Similarity=0.689  Sum_probs=44.0

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      .++..|+||++.+.+.   ..+||+|.||..||++|++.+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4567899999999776   678999999999999999999999999998864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=8.3e-13  Score=97.35  Aligned_cols=52  Identities=23%  Similarity=0.586  Sum_probs=45.3

Q ss_pred             CCCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCCCC
Q 020673          262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKSSS  316 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~  316 (323)
                      .++..|+||++.|.+.   ..+ ||+|.||..||++|++.+.+||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A           13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred             CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence            4567899999999885   455 899999999999999999999999999876544

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=97.53  Aligned_cols=54  Identities=26%  Similarity=0.598  Sum_probs=45.7

Q ss_pred             CCCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC--CCCccccccccCCCCc
Q 020673          261 SNEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNILKSSSN  317 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~i~~~~~~  317 (323)
                      ..++..|+||++.|.++   ..+| |+|.||..||++|++.+  .+||+||.++...+..
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2yur_A           12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL   68 (74)
T ss_dssp             SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred             CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence            34567999999999987   6799 99999999999999876  6899999987665443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.7e-12  Score=98.93  Aligned_cols=53  Identities=28%  Similarity=0.626  Sum_probs=46.4

Q ss_pred             CCCCccccccccccCCCc-eEEeCCCCccchHhHHHHHhcC---CCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~-lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~i~~~  314 (323)
                      .++.+|+||++.|.+++. .+.+||+|.||..||.+|++.+   .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            456789999999998765 6788999999999999999876   7899999988654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.33  E-value=1.4e-13  Score=111.29  Aligned_cols=51  Identities=27%  Similarity=0.529  Sum_probs=1.5

Q ss_pred             CCCCccccccccccCC-------------C--ceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          262 NEDAECCICLSAYDDG-------------V--ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~-------------~--~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      .+++.|+||+++|++.             +  .+..+||+|.||..||++||+.+.+||+||++..
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CCC---------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            3567899999999762             2  2333589999999999999999999999999854

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.7e-12  Score=95.56  Aligned_cols=51  Identities=31%  Similarity=0.641  Sum_probs=43.7

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHh---cCCCCccccccccCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLCKYNILKS  314 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~~i~~~  314 (323)
                      ..++..|+||++.|.+.   ..+||+|.||..||.+|++   .+.+||+||.++..+
T Consensus        17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            34568999999999875   6779999999999999997   466899999998764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-12  Score=98.07  Aligned_cols=48  Identities=21%  Similarity=0.450  Sum_probs=43.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++.+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4557899999999775   56899999999999999999999999999986

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.6e-12  Score=92.95  Aligned_cols=50  Identities=24%  Similarity=0.560  Sum_probs=43.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++.+.++.   .+||+|.||..||.+|++ .+.+||+||.++...
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            45688999999998873   479999999999999994 578999999998764

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=88.54  Aligned_cols=44  Identities=32%  Similarity=0.688  Sum_probs=38.5

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHh---cCCCCccc
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY---INATCPLC  307 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~---~~~tCPlC  307 (323)
                      ..++..|+||++.|.++   ..+||+|.||..||.+|++   .+.+||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34568999999999976   6789999999999999998   45689998

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.23  E-value=2.1e-12  Score=107.36  Aligned_cols=48  Identities=27%  Similarity=0.837  Sum_probs=43.1

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      +..|+||++.|.++   ..+||+|.||..||.+|++.+.+||+||.++...
T Consensus        53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            35799999999876   6799999999999999999999999999998643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.21  E-value=4.4e-12  Score=103.45  Aligned_cols=54  Identities=28%  Similarity=0.618  Sum_probs=47.1

Q ss_pred             CCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          262 NEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      .++.+|+||++.|.++    +....++|+|.||.+||++|++.+.+||+||+.+....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            4567899999999764    55688999999999999999999999999999887654

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.1e-11  Score=92.02  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=44.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--CCCccccccccCCCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNILKSSS  316 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~i~~~~~  316 (323)
                      ....+|+||.+.+..++...  .|+|.||..||++||+.+  .+||+||++......
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~   67 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP   67 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred             CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence            34478999999999876443  799999999999999987  899999998765443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.21  E-value=2.1e-11  Score=91.89  Aligned_cols=50  Identities=26%  Similarity=0.593  Sum_probs=44.3

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc------CCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++.      +..||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4567999999999887   57899999999999999987      77899999998764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=2.5e-11  Score=91.46  Aligned_cols=51  Identities=29%  Similarity=0.683  Sum_probs=44.5

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc------CCCCccccccccCCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI------NATCPLCKYNILKSS  315 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~i~~~~  315 (323)
                      .++..|+||++.|.+.   ..+||+|.||..|+.+|++.      +.+||+||..+....
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            4568999999999876   56799999999999999987      789999999987643

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.7e-11  Score=85.99  Aligned_cols=43  Identities=33%  Similarity=0.931  Sum_probs=37.3

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHH---hcCCCCccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWL---YINATCPLC  307 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL---~~~~tCPlC  307 (323)
                      .++..|+||++.|.++   ..+||+|.||..||++|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4567899999999887   558999999999999995   456889998

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.16  E-value=6.2e-12  Score=98.75  Aligned_cols=49  Identities=29%  Similarity=0.685  Sum_probs=42.7

Q ss_pred             CCCccccccccccCCCceEE-eCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELRE-LPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~-LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~  314 (323)
                      ++..|+||++.|.++   .. ++|+|.||..||.+|++.+ .+||+||.++...
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            457899999999875   55 8999999999999999987 7999999998643

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.16  E-value=1.7e-11  Score=91.49  Aligned_cols=50  Identities=26%  Similarity=0.507  Sum_probs=44.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++. +.+||+||.++...
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4567899999999887   67899999999999999987 78999999998754

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.9e-11  Score=88.12  Aligned_cols=54  Identities=28%  Similarity=0.515  Sum_probs=43.9

Q ss_pred             CCCccccccc-cccCCCce-EEeCCCCccchHhHHHHHhc-CCCCccccccccCCCC
Q 020673          263 EDAECCICLS-AYDDGVEL-RELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSS  316 (323)
Q Consensus       263 ed~~C~ICL~-~y~~~~~l-r~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~~  316 (323)
                      ++..|+||++ .|.++... ..+||+|.||..||++|+.. +.+||+||..+..++-
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            3578999999 78777543 45789999999999999765 4679999999876543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.15  E-value=7.4e-12  Score=93.42  Aligned_cols=50  Identities=28%  Similarity=0.613  Sum_probs=43.5

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-------CCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-------NATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-------~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++.|.+.   ..+||+|.||..||.+|++.       +.+||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            4568899999999886   45899999999999999987       67899999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.15  E-value=1.5e-11  Score=100.26  Aligned_cols=54  Identities=28%  Similarity=0.622  Sum_probs=46.7

Q ss_pred             CCCCCccccccccccCC----CceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          261 SNEDAECCICLSAYDDG----VELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~----~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ..++..|+||++.|.+.    .....++|+|.||..||++|++.+.+||+||.++.++
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            34567899999999863    4457889999999999999999999999999998765

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.14  E-value=1.1e-11  Score=96.87  Aligned_cols=48  Identities=23%  Similarity=0.692  Sum_probs=42.7

Q ss_pred             CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|++.+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            457899999999875   455 899999999999999999999999998875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.10  E-value=3.3e-11  Score=95.72  Aligned_cols=49  Identities=24%  Similarity=0.670  Sum_probs=43.3

Q ss_pred             CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            457899999999875   455 9999999999999999999999999998764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.09  E-value=1e-10  Score=89.89  Aligned_cols=49  Identities=29%  Similarity=0.678  Sum_probs=42.7

Q ss_pred             CCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC--CCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN--ATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~i~~  313 (323)
                      .++..|+||++.|.++   ..+| |+|.||..||.+|+..+  .+||+||..+..
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   62 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   62 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence            4568999999999987   6899 99999999999999754  589999998743

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.07  E-value=5e-11  Score=96.97  Aligned_cols=48  Identities=23%  Similarity=0.566  Sum_probs=42.2

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~  313 (323)
                      ++..|+||++.|.++   ..+||+|.||..||.+|+..+ .+||+||.++..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            346899999999976   678999999999999999855 489999999976

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.03  E-value=7.2e-11  Score=93.89  Aligned_cols=49  Identities=39%  Similarity=0.666  Sum_probs=42.2

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC---CCccccccccCCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA---TCPLCKYNILKSS  315 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~---tCPlCR~~i~~~~  315 (323)
                      +..|+||++.|.++   ..+||+|.||..||.+|+..+.   +||+||.++....
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            35899999999877   4579999999999999998754   8999999887643

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.99  E-value=1.6e-10  Score=98.52  Aligned_cols=49  Identities=27%  Similarity=0.646  Sum_probs=41.8

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~  313 (323)
                      ++..|+||++.|.++  +..+||+|.||..||++|++. +.+||+||.++..
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            456899999999875  333499999999999999997 7889999999854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.99  E-value=1.7e-10  Score=93.16  Aligned_cols=50  Identities=34%  Similarity=0.673  Sum_probs=43.6

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-CCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~i~~~  314 (323)
                      .++..|+||++.+.++   ..+||+|.||..||.+|++.+. +||+||.++...
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            4457899999999877   6689999999999999998765 999999998764

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.98  E-value=5e-11  Score=95.65  Aligned_cols=50  Identities=24%  Similarity=0.635  Sum_probs=43.5

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK  313 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~  313 (323)
                      ..++..|+||++.|.+.   ..+||+|.||..||.+|++. +.+||+||..+..
T Consensus        12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            34567899999999877   67899999999999999976 6789999998863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.96  E-value=1.5e-10  Score=92.91  Aligned_cols=50  Identities=28%  Similarity=0.666  Sum_probs=43.4

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~  315 (323)
                      ++..|+||++.+.++   ..+||+|.||..||.+|++. +.+||+||.++....
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            346899999999876   56899999999999999987 789999999987543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.95  E-value=2.3e-10  Score=96.40  Aligned_cols=48  Identities=17%  Similarity=0.446  Sum_probs=42.5

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-CCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~i~~~  314 (323)
                      +..|+||++.|.++   ..+||+|.||..||.+|+..+. +||+||.++...
T Consensus        78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            46899999999877   5689999999999999998764 899999998765

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.91  E-value=7.3e-10  Score=78.95  Aligned_cols=48  Identities=31%  Similarity=0.708  Sum_probs=38.3

Q ss_pred             CCCCccccccccccCCCceEEeCCC--C---ccchHhHHHHHhc--CCCCcccccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCG--H---HFHCACVDKWLYI--NATCPLCKYNIL  312 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~i~  312 (323)
                      .+...|.||+++.  ++++ .+||+  |   .||..|+++|+..  +.+||+||+++.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3457899999983  3344 69966  4   9999999999975  678999999875

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.89  E-value=5.1e-10  Score=80.67  Aligned_cols=47  Identities=28%  Similarity=0.541  Sum_probs=40.5

Q ss_pred             CCCccccccccccCCCceEEe--CCCCc-cchHhHHHHHhcCCCCcccccccc
Q 020673          263 EDAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ++.+|.||++...+.   ..+  ||+|. |..+|+++|.+.+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            457899999987665   444  99999 789999999999999999999885

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.89  E-value=3.3e-10  Score=79.40  Aligned_cols=47  Identities=21%  Similarity=0.517  Sum_probs=40.6

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~  315 (323)
                      ++..|+||++.|.+.   +.|||+|.||..||.+|   +.+||+||+.+....
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            457899999999987   67999999999999884   678999999987654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.88  E-value=1.4e-09  Score=81.53  Aligned_cols=53  Identities=19%  Similarity=0.450  Sum_probs=41.9

Q ss_pred             CCCCccccccccccCCCceEEe--CCCCccchHhHHHHHh-cCCCCccccccccCCC
Q 020673          262 NEDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWLY-INATCPLCKYNILKSS  315 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~~  315 (323)
                      .++.+|+||++.+...+. ..+  +|+|.|+..|+.++.+ .+..||.||+.+....
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            456899999999865432 344  4999999999999875 4678999999987654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.84  E-value=1.6e-09  Score=104.07  Aligned_cols=48  Identities=29%  Similarity=0.695  Sum_probs=42.5

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHh-cCCCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLY-INATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~i~~~  314 (323)
                      +.+|+||++.+.+.   ..+||+|.||..|+.+|+. .+.+||+||.++...
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            36999999998665   7899999999999999999 789999999988653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.84  E-value=4.1e-09  Score=82.44  Aligned_cols=50  Identities=14%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             CCCCccccccccccCCCceEEeCCC-CccchHhHHHHHhcCCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++-|.|+   ..+||+ |.|...||.+|+..+.+||+||.++...
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            5678999999999998   679999 9999999999999999999999988654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.82  E-value=9.4e-10  Score=91.75  Aligned_cols=49  Identities=18%  Similarity=0.455  Sum_probs=42.6

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC-CCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA-TCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~i~~  313 (323)
                      .++..|+||++.+.++   ..++|+|.||..||.+|++.+. +||+||.++..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4567999999999888   6689999999999999998664 89999998643

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.81  E-value=3.3e-09  Score=80.72  Aligned_cols=50  Identities=16%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++-|.++   ..+||+|.|...||.+|+..+.+||+||.++...
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4568999999999998   7899999999999999999999999999987643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.79  E-value=8.3e-09  Score=81.00  Aligned_cols=51  Identities=16%  Similarity=0.194  Sum_probs=46.0

Q ss_pred             CCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ..++..|+||++-|.++   ..+||+|.|...||.+|+..+.+||+||.++...
T Consensus        26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            35678999999999999   7899999999999999999999999999988653

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.79  E-value=1e-09  Score=102.93  Aligned_cols=53  Identities=32%  Similarity=0.752  Sum_probs=42.1

Q ss_pred             CCCCccccccccccCCCceE-----EeCCCCccchHhHHHHHhcC-----------CCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELR-----ELPCGHHFHCACVDKWLYIN-----------ATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr-----~LPC~H~FH~~CId~WL~~~-----------~tCPlCR~~i~~~  314 (323)
                      .+..+|+||++.+.++.++.     ..+|+|.||..||.+||+..           .+||.||++|..+
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            34578999999998844332     24699999999999999753           4699999998754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.76  E-value=2.1e-09  Score=77.20  Aligned_cols=47  Identities=28%  Similarity=0.557  Sum_probs=40.2

Q ss_pred             CCccccccccccCCCceEEe--CCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673          264 DAECCICLSAYDDGVELREL--PCGHH-FHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      +..|.||++...+.   ..+  ||+|. |+.+|+.+|.+.+..||+||++|..
T Consensus         7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            46899999986655   345  99998 9999999999988999999998853

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=1.2e-09  Score=87.96  Aligned_cols=47  Identities=23%  Similarity=0.507  Sum_probs=41.1

Q ss_pred             CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|+.  ..||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            457899999999887   566 8999999999999998  7899999998543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.74  E-value=1.4e-09  Score=80.48  Aligned_cols=44  Identities=30%  Similarity=0.583  Sum_probs=38.4

Q ss_pred             CCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ++..|.||++.+.+.   ..+||+|. |+..|+.+|    .+||+||.++..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            456899999997765   67899999 999999998    889999998864

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=1.5e-08  Score=73.84  Aligned_cols=49  Identities=24%  Similarity=0.595  Sum_probs=40.1

Q ss_pred             cCCCCCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccCC
Q 020673          259 VLSNEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       259 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ....++..|.||++...+.   ..+||+|. |+..|+..    ...||+||.+|...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           10 PSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             ccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            3445678999999986654   78999999 99999984    57899999988653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.64  E-value=1e-08  Score=87.69  Aligned_cols=50  Identities=34%  Similarity=0.664  Sum_probs=43.4

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~  314 (323)
                      .++..|+||++.+.++   ..+||+|.|+..||.+|++.+ .+||+||.++...
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4557999999999887   568999999999999999864 4999999988764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=3.5e-08  Score=76.38  Aligned_cols=46  Identities=20%  Similarity=0.425  Sum_probs=39.7

Q ss_pred             CCCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcC------CCCcc--cccc
Q 020673          262 NEDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYIN------ATCPL--CKYN  310 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~------~tCPl--CR~~  310 (323)
                      .++..|+||++.|.++   ..+| |+|.|...||.+|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            3457899999999987   6786 99999999999999864      48999  9865

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=1.5e-08  Score=74.96  Aligned_cols=45  Identities=29%  Similarity=0.574  Sum_probs=37.6

Q ss_pred             CCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ++..|.||++.+.+.   ..+||+|. |+..|+.+    ...||+||.++...
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            456899999998765   56899999 99999964    47899999988653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.51  E-value=5.9e-08  Score=88.45  Aligned_cols=49  Identities=10%  Similarity=0.083  Sum_probs=43.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~  313 (323)
                      .++..|+||++-|.++   ..+||+|.|+..||.+|+..+ .+||+||.++..
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            4567899999999998   789999999999999999874 459999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.44  E-value=7.3e-08  Score=74.33  Aligned_cols=48  Identities=21%  Similarity=0.549  Sum_probs=40.1

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhc--------CCCCcc--cccc
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPL--CKYN  310 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~--------~~tCPl--CR~~  310 (323)
                      +..+|.||++++.+++-++..+|+|.|+.+|+..+++.        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            45689999999988766666689999999999999964        236999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.36  E-value=5.9e-08  Score=72.73  Aligned_cols=43  Identities=23%  Similarity=0.665  Sum_probs=36.7

Q ss_pred             CCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      +..|.||++.+.+.   ..+||+|. |+..|+..|    ..||+||.++..
T Consensus        18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            46899999987664   78999999 999999987    389999998864

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.30  E-value=2.8e-07  Score=79.64  Aligned_cols=50  Identities=10%  Similarity=0.076  Sum_probs=43.3

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~  314 (323)
                      .++..|+||++-|.++   ..+||+|.|...||.+|+..+ .+||+|+.++...
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            4567899999999998   678999999999999999874 5799999987643

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.21  E-value=2.7e-07  Score=87.67  Aligned_cols=45  Identities=27%  Similarity=0.646  Sum_probs=39.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCc-cchHhHHHHHhcCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHH-FHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      .++..|+||++.+.+.   ..+||+|. |+..|+..|    ..||+||.++..
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            3567999999998765   77899999 999999998    789999998864

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.20  E-value=4.3e-07  Score=64.64  Aligned_cols=47  Identities=9%  Similarity=0.049  Sum_probs=42.0

Q ss_pred             CccccccccccCCCceEEe-CCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          265 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ..|+||++.++|+   ..+ +|+|.|-..||.+|++.+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            4699999999987   667 7999999999999999999999999988654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.04  E-value=2.1e-06  Score=78.07  Aligned_cols=50  Identities=22%  Similarity=0.442  Sum_probs=41.6

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--CCCcc--ccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPL--CKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--~tCPl--CR~~i~~  313 (323)
                      ..+..|+||++.|.++  ++.+.|+|.|...||.+|++.+  .+||+  |+..+..
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            4567999999999877  3445899999999999999865  47999  9987754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.72  E-value=1.6e-05  Score=61.53  Aligned_cols=47  Identities=26%  Similarity=0.428  Sum_probs=37.9

Q ss_pred             ccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673          266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  314 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~  314 (323)
                      -|.+|--.+.  ...|.+||+|.|+-+|+..|.++ .++||.|+.+|..-
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            3667765544  35699999999999999999865 68899999988653

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.62  E-value=2.5e-05  Score=70.35  Aligned_cols=49  Identities=31%  Similarity=0.605  Sum_probs=39.9

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--CCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--ATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~i~~~  314 (323)
                      -.+|.||-+-...+....  .|+|.||..|+++|++.+  .+||.|+.+-...
T Consensus       180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            478999999988774332  299999999999999865  4899999986554

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.59  E-value=0.028  Score=40.18  Aligned_cols=47  Identities=23%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC----CCccccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA----TCPLCKYNI  311 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~----tCPlCR~~i  311 (323)
                      ..+..|.||-+.   ++-+.-=.|...||..|++..|....    .||.|+.+-
T Consensus        10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            345789999743   43332223889999999999886543    599997653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.67  E-value=0.03  Score=42.82  Aligned_cols=35  Identities=14%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHH
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKW  297 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~W  297 (323)
                      ++..|.||+++|..+....-++|+|.|...|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            45789999988655544555899999999999983

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=89.68  E-value=0.37  Score=35.83  Aligned_cols=33  Identities=24%  Similarity=0.671  Sum_probs=24.5

Q ss_pred             CCCCCccccccccccCCCceEEeC---CCCccchHhHHHH
Q 020673          261 SNEDAECCICLSAYDDGVELRELP---CGHHFHCACVDKW  297 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CId~W  297 (323)
                      ...|..|.|| ..|..++   .+|   |+-.||..|+.+-
T Consensus        12 ~~~D~~C~VC-~~~t~~~---l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           12 VVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCcccCcc-ccccccc---eeccccccccccHhhcccc
Confidence            3467899999 4445453   455   6799999999996

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=88.71  E-value=0.23  Score=34.61  Aligned_cols=46  Identities=22%  Similarity=0.551  Sum_probs=31.0

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc----CCCCcccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCKYN  310 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~  310 (323)
                      .++..|.+|-..   ++-+.--.|...||..|++.=+..    .=.||.|++.
T Consensus         9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            456789999863   332222237789999999985543    2359999753

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=87.34  E-value=0.24  Score=37.19  Aligned_cols=55  Identities=22%  Similarity=0.359  Sum_probs=34.7

Q ss_pred             CCCCCCcccccccccc-CCCceEEeC-CCCccchHhHHHHHh--cCCCCccccccccCC
Q 020673          260 LSNEDAECCICLSAYD-DGVELRELP-CGHHFHCACVDKWLY--INATCPLCKYNILKS  314 (323)
Q Consensus       260 ~~~ed~~C~ICL~~y~-~~~~lr~LP-C~H~FH~~CId~WL~--~~~tCPlCR~~i~~~  314 (323)
                      ...++..|.||...-. +++.+..-. |.-.||..|+..=+.  ..=.||.|+.....+
T Consensus        21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~   79 (88)
T 2l43_A           21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP   79 (88)
T ss_dssp             CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred             cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence            3456789999987642 233333333 778999999985321  123499997765443

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=87.34  E-value=0.18  Score=35.25  Aligned_cols=49  Identities=22%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCCCccccccccccCCCceEEe-CCCCccchHhHHHHHh-----cCCCCcccccc
Q 020673          262 NEDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLY-----INATCPLCKYN  310 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~  310 (323)
                      .++..|.||-..|.++.....- .|..=||..|+.---.     .+-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            4557799999998755433333 4888899999875332     24569999763

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=87.13  E-value=0.21  Score=33.32  Aligned_cols=44  Identities=27%  Similarity=0.562  Sum_probs=28.2

Q ss_pred             ccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccc
Q 020673          266 ECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY  309 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~  309 (323)
                      .|.||-..-.+++-+.--.|...||..|++.=+...    =.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588998764333323222388999999997644332    23999965

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=86.60  E-value=0.38  Score=36.24  Aligned_cols=50  Identities=24%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             cCCCCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccc
Q 020673          259 VLSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI  311 (323)
Q Consensus       259 ~~~~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i  311 (323)
                      ....++..|.+|-..   ++-+.--.|.-.||..|+++=+...    -.||.|+..-
T Consensus        20 ~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           20 TLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             SSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             ccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            344567889999865   4322222377899999998755432    2499997643

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=84.62  E-value=0.19  Score=42.74  Aligned_cols=47  Identities=23%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNI  311 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i  311 (323)
                      .++..|.+|-..   ++-+--=.|...||..|+++-+...    =.||.|+..-
T Consensus         2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            355789999754   4422222377999999998876543    3499998643

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=84.52  E-value=0.2  Score=34.87  Aligned_cols=48  Identities=27%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~  313 (323)
                      ++..|.+|-+.   ++-+.-=.|...||..|++.=+...    =.||.|+....+
T Consensus         8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k   59 (61)
T 1mm2_A            8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK   59 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred             CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence            45779999753   3322222377899999998655432    249999775543

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=84.16  E-value=0.22  Score=35.20  Aligned_cols=49  Identities=24%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~  313 (323)
                      .++..|.||-+.   ++-+.-=-|...||..|+++=+...    =.||.|+..-.+
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~   58 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ   58 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred             CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence            456789999864   3322222388999999998655432    249999765443

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=83.43  E-value=0.12  Score=35.88  Aligned_cols=48  Identities=29%  Similarity=0.596  Sum_probs=32.3

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~~i~~  313 (323)
                      ++..|.+|-..   ++-+.-=-|...||..|+++=+...    =.||.|+....+
T Consensus         4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~   55 (60)
T 2puy_A            4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK   55 (60)
T ss_dssp             CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred             CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence            45789999874   4333222377999999999655432    249999776554

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=83.11  E-value=0.35  Score=34.88  Aligned_cols=51  Identities=25%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CCCccccccccccCCCceEEe-CCCCccchHhHHHHHhc----CCCCccccccccCC
Q 020673          263 EDAECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYI----NATCPLCKYNILKS  314 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~----~~tCPlCR~~i~~~  314 (323)
                      ++..|.||-.... ++....- -|.--||..|+..-...    .-.||.|+..+.+.
T Consensus        17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~   72 (75)
T 2k16_A           17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD   72 (75)
T ss_dssp             EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred             CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence            3456999988764 3323222 37789999999865432    34599998876543

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=82.91  E-value=0.35  Score=37.60  Aligned_cols=47  Identities=32%  Similarity=0.613  Sum_probs=30.9

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc----CCCCcccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCK  308 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR  308 (323)
                      .++..|.||.+.-+..+-+.--.|...||..|++..+..    .-.||-|+
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence            456789999887332222333458899999999987642    23466664

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=80.57  E-value=0.38  Score=37.33  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=34.4

Q ss_pred             CccccccccccCCCceEEe--CCCCccchHhHHHHH----h------cCCCCccccccccCC
Q 020673          265 AECCICLSAYDDGVELREL--PCGHHFHCACVDKWL----Y------INATCPLCKYNILKS  314 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~L--PC~H~FH~~CId~WL----~------~~~tCPlCR~~i~~~  314 (323)
                      ..|.||...|.++.....-  .|..=||..|+.-=-    +      .+-.||.|+..-..+
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~   65 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS   65 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCC
Confidence            5799999999776554444  377889999986321    0      245699998765443

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.55  E-value=0.19  Score=34.27  Aligned_cols=45  Identities=27%  Similarity=0.562  Sum_probs=29.6

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC----CCCccccc
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN----ATCPLCKY  309 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~----~tCPlCR~  309 (323)
                      .++..|.+|-..   ++-+.--.|...||..|+++=+...    =.||.|+.
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            455789999874   3323222378999999998655432    23888854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-09
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-07
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL 312
           +  EC +CL+  +DG E R LP CGH FH  CVD WL  ++TCPLC+  ++
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 60.7 bits (147), Expect = 7e-13
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 260 LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           ++     C ICL    +      LPC H F   C+ +W+  N TCPLCK  +
Sbjct: 1   MATVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 254 TPNEHV------------LSNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN 301
           TP +H+            + +    C IC     D       PCGH    +C+  W    
Sbjct: 1   TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIE---PCGHLMCTSCLTSWQESE 57

Query: 302 -ATCPLCKYNI 311
              CP C+  I
Sbjct: 58  GQGCPFCRCEI 68

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 15/61 (24%)

Query: 263 EDAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWLYINATCPLC 307
               C IC +   D                  +    C H FH  C+ +WL     CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 308 K 308
            
Sbjct: 80  N 80

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 6e-09
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNI 311
           +   C  C +       L   PC H     C++        CP+C+   
Sbjct: 5   QFLRCQQCQAEAKCPKLL---PCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 263 EDAECCICLSAYDDGVELREL--PCGHHFHCACVDKWL-YINATCPLCKYNILKS 314
           +D  C  C +       L+ +   CGH    +CVD         CP C   + KS
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 20/82 (24%)

Query: 257 EHVLSNEDAECCICL---------------SAYDDGVELRELPCGHHFHCACVDKWL--- 298
           E +    + +C IC+                A    V  R   C H FH  C+       
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 299 --YINATCPLCKYNILKSSSNQ 318
               +  CP CK    + +  Q
Sbjct: 78  NKDGSLQCPSCKTIYGEKTGTQ 99

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 266 ECCICLSAYDDG-VELRELPCGHHFHCACVDKWLYI-NATCPLCK 308
           EC +C+   +   +      CG+     C  +     N  CP C+
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKSSSNQD 319
           +  EC ICL    + V      C H F   C+ K L      + CPLCK +I K S  + 
Sbjct: 20  KILECPICLELIKEPVST---KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76

Query: 320 R 320
            
Sbjct: 77  T 77

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 8/57 (14%)

Query: 261 SNEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI--------NATCPLCKY 309
           S+  + C +CL  Y          C   F   C+ +++ +          +CP    
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 41.8 bits (97), Expect = 3e-06
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 263 EDAECCICLSAYDDGVEL--RELPCGHHFHCACVDKWL--YINATCPLCKYNI 311
           +   C IC     +             + H +C+  WL    N  C +C    
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSSNQ 318
           +   C IC     D VE     C H F   C+ + L +  + CP C+Y    +    
Sbjct: 22  KSISCQICEHILADPVET---SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSNQDR 320
            +   C  C +   + V L    C H F   CV   +     CP+C           +R
Sbjct: 20  EKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDLKINR 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.73
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.52
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.49
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.47
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.44
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.43
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.2
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.2
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.19
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.09
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.08
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.88
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.83
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.83
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.67
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.38
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	93.0
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	90.91
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	89.58
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	88.7
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	85.95
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	85.77
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	85.76
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.1
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	80.81
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	80.65

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.73  E-value=5.2e-19  Score=122.92  Aligned_cols=50  Identities=50%  Similarity=1.194  Sum_probs=46.6

Q ss_pred             CCCccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCcccccccc
Q 020673          263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      ++.+|+|||++|++++.++.+| |+|.||.+||++|++++.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4578999999999999999986 9999999999999999999999999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.52  E-value=2e-15  Score=108.97  Aligned_cols=49  Identities=37%  Similarity=0.819  Sum_probs=43.0

Q ss_pred             CCCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccC
Q 020673          263 EDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILK  313 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~  313 (323)
                      ...+|+||++.+.++  .+.+||+|.||.+||.+|++.+.+||+||+++..
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            346799999999754  5778999999999999999999999999998853

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1e-14  Score=115.55  Aligned_cols=56  Identities=27%  Similarity=0.497  Sum_probs=44.4

Q ss_pred             CCCccccccccccC---------------CCceEEeCCCCccchHhHHHHHhcC-----CCCccccccccCCCCcc
Q 020673          263 EDAECCICLSAYDD---------------GVELRELPCGHHFHCACVDKWLYIN-----ATCPLCKYNILKSSSNQ  318 (323)
Q Consensus       263 ed~~C~ICL~~y~~---------------~~~lr~LPC~H~FH~~CId~WL~~~-----~tCPlCR~~i~~~~~~~  318 (323)
                      .+.+|+||++++.+               ...++.+||+|.||.+||++||+.+     .+||+||+.+..+..++
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~q   99 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ   99 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCC
Confidence            45689999998853               2346778899999999999999853     47999999887665443

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-14  Score=110.19  Aligned_cols=49  Identities=29%  Similarity=0.595  Sum_probs=41.6

Q ss_pred             CCccccccccccCCC---------------ceEEeCCCCccchHhHHHHHhcCCCCcccccccc
Q 020673          264 DAECCICLSAYDDGV---------------ELRELPCGHHFHCACVDKWLYINATCPLCKYNIL  312 (323)
Q Consensus       264 d~~C~ICL~~y~~~~---------------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~  312 (323)
                      +.+|+||++++.+..               .+..+||+|.||..||++||+.+.+||+||++..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            456999998886433               3677899999999999999999999999999764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.7e-15  Score=100.02  Aligned_cols=48  Identities=21%  Similarity=0.451  Sum_probs=41.3

Q ss_pred             ccccccccccCCCc-eEEeCCCCccchHhHHHHHhc-CCCCccccccccC
Q 020673          266 ECCICLSAYDDGVE-LRELPCGHHFHCACVDKWLYI-NATCPLCKYNILK  313 (323)
Q Consensus       266 ~C~ICL~~y~~~~~-lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~  313 (323)
                      +|+|||++|.+++. ++.+||+|.||.+|+++|++. +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999999987765 455689999999999999985 5679999998864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-14  Score=101.22  Aligned_cols=53  Identities=28%  Similarity=0.526  Sum_probs=43.0

Q ss_pred             CCCccccccccccCCC--ceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCC
Q 020673          263 EDAECCICLSAYDDGV--ELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  315 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~--~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~  315 (323)
                      |+..|+||++++..+.  .+..+||+|.||.+||.+|++. +.+||+||+++..++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            5678999999865433  3456789999999999999965 568999999987654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=102.27  Aligned_cols=50  Identities=28%  Similarity=0.678  Sum_probs=42.7

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSSS  316 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~~  316 (323)
                      ...|+||++.+.+.   +.+||+|.||.+||++||+. +.+||+||++|.....
T Consensus        23 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          23 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            45799999988764   78999999999999999984 5789999999976543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.20  E-value=3.5e-12  Score=89.30  Aligned_cols=49  Identities=24%  Similarity=0.591  Sum_probs=39.0

Q ss_pred             CCCCccccccccccCCCceEEeCC-----CCccchHhHHHHHh--cCCCCccccccccC
Q 020673          262 NEDAECCICLSAYDDGVELRELPC-----GHHFHCACVDKWLY--INATCPLCKYNILK  313 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC-----~H~FH~~CId~WL~--~~~tCPlCR~~i~~  313 (323)
                      +++..|.||++++.++   ...||     .|.||..||++|++  .+.+||+||+++..
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            4567899999998765   33454     49999999999995  46789999998753

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-12  Score=90.78  Aligned_cols=47  Identities=21%  Similarity=0.544  Sum_probs=40.8

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCCCCc
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSN  317 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~~~~  317 (323)
                      .+|+||++.|.+.   +.+||+|.||..||++|   +.+||+||+++..+...
T Consensus         7 l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~   53 (56)
T d1bora_           7 LRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT   53 (56)
T ss_dssp             SSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred             CCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCCC
Confidence            5899999999887   67899999999999876   77899999999766544

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=2.1e-12  Score=89.28  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=41.6

Q ss_pred             ccccccccccCCCceEEeC-CCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          266 ECCICLSAYDDGVELRELP-CGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       266 ~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      .|+||++.++++   ..+| |+|.||.+||.+|++.+.+||+||+++..+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            599999999887   5676 999999999999999999999999988764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.1e-11  Score=91.44  Aligned_cols=48  Identities=29%  Similarity=0.682  Sum_probs=42.1

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~~  315 (323)
                      ..|+||++.+.+.   ..+||+|.|+..||.+|++. +.+||.||.++...+
T Consensus        24 l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            5799999999877   78999999999999999975 568999999886543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.8e-11  Score=93.74  Aligned_cols=48  Identities=40%  Similarity=0.717  Sum_probs=41.2

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHHHHHhcC---CCCccccccccCCC
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN---ATCPLCKYNILKSS  315 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~i~~~~  315 (323)
                      ..|+||++.|.++   ..+||+|.||..||.+|++.+   ..||+||.++...+
T Consensus        22 l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            5799999999887   568999999999999999764   47999999886543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.4e-10  Score=88.74  Aligned_cols=47  Identities=21%  Similarity=0.452  Sum_probs=38.8

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCCCCccccccccCC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ...|+||++.|.++  +...+|+|.||..||.+|+.  ..||.||.++...
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             cCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            35899999999887  23357999999999999985  4599999987654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=9.4e-10  Score=80.98  Aligned_cols=50  Identities=10%  Similarity=0.100  Sum_probs=43.7

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhc-CCCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI-NATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~i~~~  314 (323)
                      .++..|+||++-|.++   ..+||+|.|+..||.+|+.. +.+||.|+.++...
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            4678899999999998   67899999999999999975 56899999987643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=1.3e-09  Score=79.70  Aligned_cols=50  Identities=26%  Similarity=0.501  Sum_probs=44.1

Q ss_pred             CCCCccccccccccCCCceEEeCCCCccchHhHHHHHhcC-CCCccccccccCC
Q 020673          262 NEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN-ATCPLCKYNILKS  314 (323)
Q Consensus       262 ~ed~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~i~~~  314 (323)
                      .++..|+||++-|.++   ..++|+|.|+..||.+|++.+ .+||.|+.++...
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            4668999999999998   678999999999999999875 6799999988654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.3e-08  Score=77.79  Aligned_cols=51  Identities=14%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             CCCCCccccccccccCCCceEEeCCC-CccchHhHHHHHhcCCCCccccccccCC
Q 020673          261 SNEDAECCICLSAYDDGVELRELPCG-HHFHCACVDKWLYINATCPLCKYNILKS  314 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~i~~~  314 (323)
                      ..++..|+||++-|.|+   ..+||+ |.|...||.+||+.+.+||+|+.++...
T Consensus        19 ~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            45679999999999999   789966 5799999999999999999999988654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.5e-08  Score=74.34  Aligned_cols=46  Identities=20%  Similarity=0.488  Sum_probs=37.3

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcC--------CCCccccc
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYIN--------ATCPLCKY  309 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~--------~tCPlCR~  309 (323)
                      ..+|+||++++..++-.+.++|+|.||.+|+..|++.+        -+||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            36799999999877767777899999999999999631        25998643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.015  Score=37.52  Aligned_cols=44  Identities=32%  Similarity=0.680  Sum_probs=29.6

Q ss_pred             CccccccccccCCCceEEe-CCCCccchHhHHHHHhcCC----CCccccc
Q 020673          265 AECCICLSAYDDGVELREL-PCGHHFHCACVDKWLYINA----TCPLCKY  309 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~L-PC~H~FH~~CId~WL~~~~----tCPlCR~  309 (323)
                      +.|.||-..-.++ .+..- .|+..||..|++.-+....    .||.||.
T Consensus         1 a~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           1 ARCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            3588897664333 33222 3789999999998765432    4999975

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.91  E-value=0.034  Score=37.45  Aligned_cols=48  Identities=23%  Similarity=0.433  Sum_probs=34.3

Q ss_pred             CCCccccccccccCCCceEEeC-CCCccchHhHHHHHh-----cCCCCcccccc
Q 020673          263 EDAECCICLSAYDDGVELRELP-CGHHFHCACVDKWLY-----INATCPLCKYN  310 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~-----~~~tCPlCR~~  310 (323)
                      .+..|.+|...+.+++....=. |+.-||..|++.=..     .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3468999999888876644444 899999999963211     13469999753

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.055  Score=37.14  Aligned_cols=47  Identities=23%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhcCC----CCccccccccC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINA----TCPLCKYNILK  313 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~~~----tCPlCR~~i~~  313 (323)
                      ...|.+|-..   ++-+.-=.|...||..|++..+....    .||.|+..-..
T Consensus         7 c~~C~~C~~~---~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~   57 (70)
T d1fp0a1           7 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL   57 (70)
T ss_dssp             SSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred             CCCCCCCCCc---CEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCcc
Confidence            3467777532   43222223889999999998875432    39999754433

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.70  E-value=0.12  Score=35.64  Aligned_cols=45  Identities=27%  Similarity=0.598  Sum_probs=26.4

Q ss_pred             CCCccccccccccCCCceEEe--CCCC-ccchHhHHHHHhc----CCCCcccccc
Q 020673          263 EDAECCICLSAYDDGVELREL--PCGH-HFHCACVDKWLYI----NATCPLCKYN  310 (323)
Q Consensus       263 ed~~C~ICL~~y~~~~~lr~L--PC~H-~FH~~CId~WL~~----~~tCPlCR~~  310 (323)
                      ++..++||..... ++.+...  .|.+ -||..|+.  |..    +-.||.|+..
T Consensus        14 ~e~~~CiC~~~~~-~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          14 NEPTYCLCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             SSCCCSTTCCCCC-SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred             CCCCEEEeCCCCC-CCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence            3445679987643 3322221  1444 59999985  333    2359999764

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.95  E-value=0.29  Score=34.46  Aligned_cols=33  Identities=24%  Similarity=0.671  Sum_probs=25.9

Q ss_pred             CCCCCccccccccccCCCceEEeC---CCCccchHhHHHH
Q 020673          261 SNEDAECCICLSAYDDGVELRELP---CGHHFHCACVDKW  297 (323)
Q Consensus       261 ~~ed~~C~ICL~~y~~~~~lr~LP---C~H~FH~~CId~W  297 (323)
                      ...|..|.|| +.|..++   .+|   |+-.||..|+.+-
T Consensus        12 v~~D~mC~vC-~v~t~~~---l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Ccccccc---eecceeecchhhHHHHHHh
Confidence            3567889999 7777664   346   5699999999997

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.77  E-value=0.76  Score=31.75  Aligned_cols=47  Identities=26%  Similarity=0.496  Sum_probs=31.9

Q ss_pred             CccccccccccCCCceEEeC-CCCccchHhHH--HHH-h--cCCCCccccccc
Q 020673          265 AECCICLSAYDDGVELRELP-CGHHFHCACVD--KWL-Y--INATCPLCKYNI  311 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LP-C~H~FH~~CId--~WL-~--~~~tCPlCR~~i  311 (323)
                      ..++||-..+.+++....-- |+--||..|+.  ..- .  .+-.||.|+..-
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            56779998877665443333 88889999985  222 1  135799998644

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.76  E-value=0.11  Score=37.05  Aligned_cols=52  Identities=17%  Similarity=0.365  Sum_probs=32.7

Q ss_pred             CCccccccccccCC-CceEEeC-CCCccchHhHHHHHh-----c---CCCCccccccccCCC
Q 020673          264 DAECCICLSAYDDG-VELRELP-CGHHFHCACVDKWLY-----I---NATCPLCKYNILKSS  315 (323)
Q Consensus       264 d~~C~ICL~~y~~~-~~lr~LP-C~H~FH~~CId~WL~-----~---~~tCPlCR~~i~~~~  315 (323)
                      +..|.||-....++ ..+..-- |+..||..|++..+.     .   .-.||.|+.......
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~   77 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA   77 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhhh
Confidence            35799998654332 3333333 779999999875432     1   235999977554433

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.097  Score=34.77  Aligned_cols=47  Identities=28%  Similarity=0.490  Sum_probs=30.5

Q ss_pred             CCccccccccccCCCceEEeCCCCccchHhHHHHHhc----CCCCccccccccC
Q 020673          264 DAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYI----NATCPLCKYNILK  313 (323)
Q Consensus       264 d~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId~WL~~----~~tCPlCR~~i~~  313 (323)
                      +..|.+|-+.   ++-+.-=.|.-.||..|++.-+..    .-.||.|+..-.+
T Consensus         9 ~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~k   59 (61)
T d1mm2a_           9 MEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK   59 (61)
T ss_dssp             CSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred             cCCCcCCCCC---CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcccC
Confidence            3569999743   432222237789999999876653    2359999765544

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.81  E-value=0.81  Score=31.08  Aligned_cols=46  Identities=26%  Similarity=0.510  Sum_probs=28.7

Q ss_pred             CccccccccccCCCceEEeCCCCccchHhHH------HHH---hcCCCCccccccc
Q 020673          265 AECCICLSAYDDGVELRELPCGHHFHCACVD------KWL---YINATCPLCKYNI  311 (323)
Q Consensus       265 ~~C~ICL~~y~~~~~lr~LPC~H~FH~~CId------~WL---~~~~tCPlCR~~i  311 (323)
                      ..| ||-..+.+++-+.-=.|.--||..|+.      ...   ..+-.||.|+..-
T Consensus        17 ~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~   71 (76)
T d1wema_          17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcC
Confidence            345 898776555433222377889999982      111   2346899996543

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.65  E-value=0.18  Score=34.38  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=29.1

Q ss_pred             ccccccccCCCceEEeC-CCCccchHhHHHHHh----cCCCCcccccc
Q 020673          268 CICLSAYDDGVELRELP-CGHHFHCACVDKWLY----INATCPLCKYN  310 (323)
Q Consensus       268 ~ICL~~y~~~~~lr~LP-C~H~FH~~CId~WL~----~~~tCPlCR~~  310 (323)
                      +||...+.+++....-. |+.-||..|+..=..    ..-.||.|+..
T Consensus        19 C~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~   66 (72)
T d1weea_          19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             CTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             eeCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCc
Confidence            38988777776544444 889999999764111    23469999764