Citrus Sinensis ID: 020678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHccccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEHHHHHHHcccccccccccccccEEEEccccccccHHHHHHHHHHHccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEccccHHHHHHHHcccccccccccccHHHHHcccccccccccccccEEEEccccccccccccccEEEEEEEccccEEEEEEEEEccccccEEEEccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccHHHcccccccHHHHcccccEEEEEcccccHcHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHEccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHccccccHHHcccccEEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEEEEccccccEEEEEEEEEEEEEccccHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccEEEcccHccccccHccccEEEEEEccccEEEEEEEEEcccccccEEEHHHHHEEEEHHHcccccHcccccc
Coil and Loop (DISEMBL)
marfrnskkkgFVKSFvkkkqptvdhitgdkipksfvfsrgklpgplrQLEMDLRKLMLPHTALNLKEKKRNNLKDFlnvagpmgvTHFLMLSktesapylrvartpqgptltfkIHEYSLAVDVaqsqlrprcpqdlfktsplivlsgfgtgdqhLKLTTIMFQnifpaidintvklsTCQRIVLLnynkdtklidfrhysirlqpvgvSRRLRKFVqshqvpdlrslqDVSDFVtkagygseseaddeAATVTLVSDlgrvnrastKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Flexible Loop (DISEMBL)
marfrnskkkgfvksfvkkkqptvdhitgdkipksfvfsrgklpgpLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLnynkdtklidfRHYSIRLQPVGVSRRLRKFVQshqvpdlrslqdvsDFVTKAGygseseaddeaATVTLvsdlgrvnrastksavklqeigprmtLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Low Complexity Region (SEG)
MARFRNskkkgfvksfvkkkQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAlnlkekkrnnlkDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Disordered region (IsUnstruct)
*************************HITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVT****************VTLVSDLGRV*******AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGL***
Disordered Region (DISOPRED)
**********************************SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ***********FKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRL***********LRSLQDV***************************************VKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCF**CIREGLL**
Disordered Region (DISEMBL)
************VKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG**********AATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Disordered Region (DISPRO)
*****************************DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA************ATVTLVS*L******STKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHFCIREGLLSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q9ASU7	345	Peter Pan-like protein OS	yes	no	0.934	0.875	0.821	1e-146
Q91YU8	470	Suppressor of SWI4 1 homo	yes	no	0.829	0.570	0.474	2e-67
Q9NQ55	473	Suppressor of SWI4 1 homo	no	no	0.832	0.568	0.472	3e-66
Q5REM3	473	Suppressor of SWI4 1 homo	yes	no	0.832	0.568	0.468	1e-65
Q9VDE5	460	Protein Peter pan OS=Dros	yes	no	0.832	0.584	0.433	4e-61
Q54N44	426	Peter Pan-like protein OS	yes	no	0.835	0.633	0.407	1e-60
O14206	389	Brix domain-containing pr	yes	no	0.897	0.745	0.394	2e-52
P38789	453	Ribosome biogenesis prote	yes	no	0.839	0.598	0.343	2e-45
Q12153	453	Ribosome biogenesis prote	no	no	0.839	0.598	0.337	3e-45

>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/303 (82%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEY 302
           SEY
Sbjct: 301 SEY 303

May play a role in cell growth, differentiation and cell cycle progression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 193/274 (70%), Gaps = 6/274 (2%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG+    +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct: 149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYG---SESEADDEAATVTLVSDL-GRVNRAST 268
            ++K +Q  + P++  LQD+S+ +   G G   SE E D E  T  L   + GR N  + 
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLA-TGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQ 266

Query: 269 KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           +SAV+L EIGPRMTLQLIK++EG+ +G+++F  +
Sbjct: 267 QSAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSF 300

May have a role in cell growth.

Mus musculus (taxid: 10090)

>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1

 Score =  252 bits (643), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 129/273 (47%), Positives = 186/273 (68%), Gaps = 4/273 (1%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTK 269
            ++K +Q  + P++  LQD+S+ +      SESEA+   D   T    +  GR N  + +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267

Query: 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           SAV+L EIGPRMTLQLIKV+EG+  G ++F  +
Sbjct: 268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300

May have a role in cell growth.

Homo sapiens (taxid: 9606)

>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1

 Score =  249 bits (637), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 185/273 (67%), Gaps = 4/273 (1%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++   P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNHDSQELDFRHYSIKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTK 269
            ++K +Q  + P++  LQD+S+ +      SESEA+   D   T    +  GR N  + +
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267

Query: 270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           SAV+L EIGPRMTLQLIKV+EG+  G ++F  +
Sbjct: 268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300

May have a role in cell growth.

Pongo abelii (taxid: 9601)

>sp|Q9VDE5|PPAN_DROME Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 118/272 (43%), Positives = 178/272 (65%), Gaps = 3/272 (1%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFV  RG     +  L +D R++M P TA NL+EK+ N +KDF++++    V+H  + 
Sbjct: 28  PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct: 88  NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
             +HLKL    FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct: 148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEA-DDEAATVTLVSDL-GRVNRASTKS 270
            ++K V+   VP+L    +V DFVTK GY SESEA DDE + V L   L  + N    KS
Sbjct: 208 AVQKIVKG-TVPNLGKCNEVVDFVTKDGYASESEAEDDEQSHVVLAQTLKSKGNLEDKKS 266

Query: 271 AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
           ++KL EIGPR+T+QLIK+EEGL +G +++ ++
Sbjct: 267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDH 298

Required for initiation of larval growth and normal mitotic growth but is not absolutely required for general biosynthesis or DNA replication. Required for progression of normal oogenesis and maturation of some imaginal tissues into adult structures.

Drosophila melanogaster (taxid: 7227)

>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/285 (40%), Positives = 181/285 (63%), Gaps = 15/285 (5%)

Query: 32  IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91
           I KS V+ RG     +++L  + R++M P+TA  L+E   N  KDF+N+A   GV+H + 
Sbjct: 45  ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVG 104

Query: 92  LSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG 151
            S T+   Y+ +AR P+GPT TFKI EYS   DVA++++RP   +  +  SPL+VL+GF 
Sbjct: 105 FSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFT 164

Query: 152 TGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
            G  HL++   M Q++FP+I++ T+KLSTC+R+VL NYNK+T  ++FRHY+I++  VGV+
Sbjct: 165 RGTPHLEMVQNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVN 224

Query: 212 RRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADD-EAATVTLVSDL---------- 260
           R +++ +QS ++PD+ +L D+SD+V      +ES+ +D     V L S +          
Sbjct: 225 RSIKRIIQS-KIPDISNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKL 283

Query: 261 ---GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
              G     + K A+KL+EIGPRM L L+KVE+ L  G +++ +Y
Sbjct: 284 ERKGLDINTTQKRAIKLEEIGPRMNLSLLKVEDDLYKGEVLYHQY 328

Dictyostelium discoideum (taxid: 44689)

>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/317 (39%), Positives = 182/317 (57%), Gaps = 27/317 (8%)

Query: 11  GFVKSFVKKK-QPTVDHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTALNLK 67
           G  K  VKK+     D I    IPKS V   G  ++   L  L  DLR +M PHTA+ LK
Sbjct: 3   GIGKKRVKKRTHLKADPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLK 62

Query: 68  EKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ 127
           E+K N +KD+L +AGP+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV +
Sbjct: 63  ERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRR 122

Query: 128 SQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQR 183
            Q  P+ P   F T PL+V++ F         H  L T  FQN+FP I +    +++ +R
Sbjct: 123 LQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKR 182

Query: 184 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTK- 238
           ++LLN  +D   ID RH+ I  +PVG+SR +R  ++  +    +PDL +++D+SD+V   
Sbjct: 183 VLLLNR-RDDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYVLHG 241

Query: 239 ---AGYGSESEADDEAATVTL---VSDLGRVNRAST-------KSAVKLQEIGPRMTLQL 285
              +G  S+SE  +E ATV +   V      N  S        + A+KL EIGPRMTL+L
Sbjct: 242 DGISGAASDSEI-EEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKLIEIGPRMTLEL 300

Query: 286 IKVEEGLCSGSIIFSEY 302
           IK+ E    G +++  +
Sbjct: 301 IKITEDAMGGKVLYHSH 317

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 176/335 (52%), Gaps = 64/335 (19%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGF------GTGDQHLKLTTI---MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
           VL+GF      G  DQ + +  +   MFQNIFP ++     L++ +R+ ++N +++T  I
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEI 201

Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
             RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query: 249 DEA-------------ATVTLVSDLGRVNRAST--------------------------- 268
           D+A              + +L S    V +                              
Sbjct: 262 DDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEPKPSENLQPTP 321

Query: 269 -KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
            K A+KL E+GPR+TL+L+K+EEG+CSG ++  E+
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEF 356

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 175/335 (52%), Gaps = 64/335 (19%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGFGTG------DQHLKLTTI---MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
           VL+GF T       DQ + +  +   MFQNIFP ++     L++ +RI ++N +++T  I
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201

Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
             RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query: 249 DEAATVTLVSDLGRVNRAST---------------------------------------- 268
           D+A    + +   +   + T                                        
Sbjct: 262 DDAIVRVVDNQDVKAKHSQTSLSQKTPVKMTDNEEREKGIEEEDVEMEEPKPSENSQPTP 321

Query: 269 -KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
            K A+KL E+GPR+TL+L+K+E+G+CSG ++  E+
Sbjct: 322 RKKAIKLTELGPRLTLKLVKIEDGICSGKVLHHEF 356

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
449469080	344	PREDICTED: peter Pan-like protein-like [	0.938	0.880	0.894	1e-158
225437370	330	PREDICTED: peter Pan-like protein [Vitis	0.934	0.915	0.864	1e-156
224128486	327	predicted protein [Populus trichocarpa]	0.938	0.926	0.874	1e-154
224068336	297	predicted protein [Populus trichocarpa]	0.913	0.993	0.881	1e-153
297793739	304	brix domain-containing protein [Arabidop	0.938	0.996	0.832	1e-146
255564174	341	Protein Peter pan, putative [Ricinus com	0.934	0.885	0.825	1e-145
30697573	346	Peter Pan-like protein [Arabidopsis thal	0.934	0.872	0.821	1e-144
30697571	345	Peter Pan-like protein [Arabidopsis thal	0.934	0.875	0.821	1e-144
356544390	348	PREDICTED: peter Pan-like protein-like [	0.916	0.850	0.807	1e-140
363814435	336	uncharacterized protein LOC100785073 [Gl	0.916	0.880	0.791	1e-137

>gi|449469080|ref|XP_004152249.1| PREDICTED: peter Pan-like protein-like [Cucumis sativus]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/303 (89%), Positives = 287/303 (94%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR  N KK+ FVK    KKQ  VDH+TG+KIPKSFVFSRGKLPGPL+QL+MDLRKLMLP
Sbjct: 1   MARIGNKKKQRFVKPIKVKKQSEVDHVTGEKIPKSFVFSRGKLPGPLKQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRNNLKD+LNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNNLKDYLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIQEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
           LAV++AQSQLRPRCP+DLFK  PLIVLSGFGTGDQHLKL TIMFQNIFPAIDINTVKLST
Sbjct: 121 LAVEIAQSQLRPRCPKDLFKNPPLIVLSGFGTGDQHLKLATIMFQNIFPAIDINTVKLST 180

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG 240
           CQRIVLLNYNKDTKLIDFRHYSIRLQPVGV+RRLRKFVQ+HQVPDLRSLQDVSDFVTKAG
Sbjct: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVTRRLRKFVQNHQVPDLRSLQDVSDFVTKAG 240

Query: 241 YGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300
           YGSESEADDEAATVTL SDLGRVN+ASTKSAVKLQEIGPR+TLQLIKVEEGLCSG IIF+
Sbjct: 241 YGSESEADDEAATVTLASDLGRVNQASTKSAVKLQEIGPRLTLQLIKVEEGLCSGGIIFN 300

Query: 301 EYG 303
           EYG
Sbjct: 301 EYG 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437370|ref|XP_002269158.1| PREDICTED: peter Pan-like protein [Vitis vinifera] gi|297743890|emb|CBI36860.3| unnamed protein product [Vitis vinifera]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 262/303 (86%), Positives = 291/303 (96%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MARFRN+KKKGFVK  V KKQP VDH+TG+KIP S VFSRGKLPG L+QL+MDLRKLMLP
Sbjct: 1   MARFRNNKKKGFVKP-VGKKQPGVDHVTGEKIPHSIVFSRGKLPGSLKQLQMDLRKLMLP 59

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TA+NLKEK+RNNLKDFLN+AGP+GVTHFLMLSKTE+APYL+VARTPQGPTLTFKIHEYS
Sbjct: 60  YTAVNLKEKRRNNLKDFLNIAGPLGVTHFLMLSKTETAPYLKVARTPQGPTLTFKIHEYS 119

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
           LAVDVAQSQLRPRCPQDLFK SPLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTVKLS+
Sbjct: 120 LAVDVAQSQLRPRCPQDLFKNSPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSS 179

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG 240
           CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS+R+RKFVQ+HQVPDL++LQDVSDF+TKAG
Sbjct: 180 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSKRVRKFVQNHQVPDLKNLQDVSDFITKAG 239

Query: 241 YGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300
           YGSESE DDEAATVTL SDLGR+N+AS+KSAVKLQEIGPRMTLQLIK+EEGLCSG +IF+
Sbjct: 240 YGSESEVDDEAATVTLASDLGRINKASSKSAVKLQEIGPRMTLQLIKIEEGLCSGGVIFN 299

Query: 301 EYG 303
            YG
Sbjct: 300 AYG 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128486|ref|XP_002320344.1| predicted protein [Populus trichocarpa] gi|222861117|gb|EEE98659.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/303 (87%), Positives = 284/303 (93%)

Query: 4   FRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTA 63
           F    KK FVK   KKKQ  VDHITGDKIPKSFVF+RGKLPGPLRQL+M+LRKLMLP TA
Sbjct: 24  FIQKNKKMFVKPTSKKKQADVDHITGDKIPKSFVFARGKLPGPLRQLQMNLRKLMLPFTA 83

Query: 64  LNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAV 123
           L LKEKKRN+LKDFLNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKIHEYSLAV
Sbjct: 84  LKLKEKKRNSLKDFLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIHEYSLAV 143

Query: 124 DVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQR 183
           DVAQSQL PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTVKLS+CQR
Sbjct: 144 DVAQSQLHPRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSSCQR 203

Query: 184 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGS 243
           IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ+ QVPDLR+LQDVSDFV+KAGYGS
Sbjct: 204 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVSKAGYGS 263

Query: 244 ESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYG 303
           ESE DDEAATVTL +DLGRVN+ASTKSAVKLQEIGPRMTLQL+K+EEGLCSG +IFSEYG
Sbjct: 264 ESEGDDEAATVTLANDLGRVNKASTKSAVKLQEIGPRMTLQLVKIEEGLCSGGVIFSEYG 323

Query: 304 MCI 306
           M I
Sbjct: 324 MFI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068336|ref|XP_002302711.1| predicted protein [Populus trichocarpa] gi|222844437|gb|EEE81984.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 260/295 (88%), Positives = 279/295 (94%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
           FVK  VKKKQ  VDHITGDKIPKSFVF+RGKLPG LRQL+MDLRKLMLP+TAL LKEKKR
Sbjct: 2   FVKPIVKKKQANVDHITGDKIPKSFVFARGKLPGSLRQLQMDLRKLMLPYTALKLKEKKR 61

Query: 72  NNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLR 131
           NNLKDFLNVAGPMGV+HFL+LSKTE+APYLRVARTPQGPTLTFKIHEYSLA DVAQSQL 
Sbjct: 62  NNLKDFLNVAGPMGVSHFLILSKTETAPYLRVARTPQGPTLTFKIHEYSLAADVAQSQLH 121

Query: 132 PRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNK 191
           PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQ IFPAIDINTVKLS+CQRIVLLNYNK
Sbjct: 122 PRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQKIFPAIDINTVKLSSCQRIVLLNYNK 181

Query: 192 DTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEA 251
           DTKLIDFRHYSI+LQPVGVSRRLRKFVQ+ QVPDLR+LQDVSDFVTKAGYGSESE DDEA
Sbjct: 182 DTKLIDFRHYSIKLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVTKAGYGSESEGDDEA 241

Query: 252 ATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCI 306
           ATVTL +DLGRVN+ASTKSAVKLQEIGPRM LQL+K+EEGLCSG +IFSEYGM I
Sbjct: 242 ATVTLANDLGRVNKASTKSAVKLQEIGPRMVLQLVKIEEGLCSGDVIFSEYGMFI 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793739|ref|XP_002864754.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310589|gb|EFH41013.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/304 (83%), Positives = 279/304 (91%), Gaps = 1/304 (0%)

Query: 1   MARFRNSKK-KGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK +  VK   KK Q  V H+TGDKIPKSFVFSR KLPGP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIVKPIPKKNQEDVSHVTGDKIPKSFVFSRMKLPGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ STKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGSTKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEYG 303
           SEYG
Sbjct: 301 SEYG 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564174|ref|XP_002523084.1| Protein Peter pan, putative [Ricinus communis] gi|223537646|gb|EEF39269.1| Protein Peter pan, putative [Ricinus communis]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/303 (82%), Positives = 277/303 (91%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR ++ K+K   K  VKK+   VDHITGDKIPKSFVF+RGKLPGPLRQL+MDLRKLMLP
Sbjct: 1   MARVQSKKRKFAAKPIVKKEHGNVDHITGDKIPKSFVFARGKLPGPLRQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRN L+DFLNVAGPMGVTHFLMLSKT +APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNTLRDFLNVAGPMGVTHFLMLSKTATAPYLRVARTPQGPTLTFKILEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
            A+DVAQSQLRPRCPQDLFK  PLIVLSGFG+ +QHLKLT IMFQNIFPAID+NTVKLS+
Sbjct: 121 TALDVAQSQLRPRCPQDLFKNPPLIVLSGFGS-EQHLKLTAIMFQNIFPAIDVNTVKLSS 179

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAG 240
           CQRIVLL YNKDTK  DFRHYSIRLQPVGV+RR+RKFVQ+H+VP+L   QDVSDF+TK+G
Sbjct: 180 CQRIVLLTYNKDTKHTDFRHYSIRLQPVGVTRRIRKFVQNHEVPNLSGHQDVSDFITKSG 239

Query: 241 YGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFS 300
           YGSESEAD+EAATVTL +DL RVNRASTKSAVKLQE+GPRMTLQLIKVEEGLCSG++IF+
Sbjct: 240 YGSESEADEEAATVTLANDLSRVNRASTKSAVKLQELGPRMTLQLIKVEEGLCSGALIFN 299

Query: 301 EYG 303
           EYG
Sbjct: 300 EYG 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697573|ref|NP_568939.2| Peter Pan-like protein [Arabidopsis thaliana] gi|42573760|ref|NP_974976.1| Peter Pan-like protein [Arabidopsis thaliana] gi|10176870|dbj|BAB10077.1| unnamed protein product [Arabidopsis thaliana] gi|332010132|gb|AED97515.1| Peter Pan-like protein [Arabidopsis thaliana] gi|332010133|gb|AED97516.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/303 (82%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEY 302
           SEY
Sbjct: 301 SEY 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697571|ref|NP_851242.1| Peter Pan-like protein [Arabidopsis thaliana] gi|24212091|sp|Q9ASU7.1|PPAN_ARATH RecName: Full=Peter Pan-like protein gi|13605686|gb|AAK32836.1|AF361824_1 AT5g61770/mac9_70 [Arabidopsis thaliana] gi|15810077|gb|AAL06964.1| At1g06730/F4H5_22 [Arabidopsis thaliana] gi|17979000|gb|AAL47460.1| AT5g61770/mac9_70 [Arabidopsis thaliana] gi|332010131|gb|AED97514.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/303 (82%), Positives = 276/303 (91%), Gaps = 1/303 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query: 240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
           GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct: 241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query: 300 SEY 302
           SEY
Sbjct: 301 SEY 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544390|ref|XP_003540635.1| PREDICTED: peter Pan-like protein-like [Glycine max]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/302 (80%), Positives = 272/302 (90%), Gaps = 6/302 (1%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  V KK      QP+VD ITG KIPKSFVFSRGKLP PL+QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVVIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPLKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++ YLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSSYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTC 181
           A D+A+SQL PRCP+DLFK S LIVLSGF +GD  L+LTT MFQNIFP ID+ TVKLSTC
Sbjct: 124 AADIARSQLHPRCPKDLFKNSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTVKLSTC 183

Query: 182 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGY 241
           QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RK VQSHQVPDLR+LQDVSDFVTKAGY
Sbjct: 184 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKLVQSHQVPDLRNLQDVSDFVTKAGY 243

Query: 242 GSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE 301
           GSESEAD+EAATVTL SD+GRVNRASTKSAVKLQE+GPRMTLQL+K+E+GLCSG ++FSE
Sbjct: 244 GSESEADEEAATVTLSSDIGRVNRASTKSAVKLQEVGPRMTLQLVKIEKGLCSGEVLFSE 303

Query: 302 YG 303
           YG
Sbjct: 304 YG 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814435|ref|NP_001242597.1| uncharacterized protein LOC100785073 [Glycine max] gi|255644918|gb|ACU22959.1| unknown [Glycine max]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/302 (79%), Positives = 271/302 (89%), Gaps = 6/302 (1%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  + KK      QP+VD ITG KIPKSFVFSRGKLP P +QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVIIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPPKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++PYLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSPYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTC 181
           A D+A+SQL PRCP+DLFK+S LIVLSGF +GD  L+LTT MFQNIFP ID+ TVKLSTC
Sbjct: 124 AADIARSQLHPRCPKDLFKSSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTVKLSTC 183

Query: 182 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGY 241
           QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RK VQSHQVPDLR+L DVS+FVTKAGY
Sbjct: 184 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKLVQSHQVPDLRNLLDVSNFVTKAGY 243

Query: 242 GSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSE 301
           GSESEAD+EAATVTL SD+GRVNRASTKSAVKL E+GPRMTLQL+++E+GLCSG ++FSE
Sbjct: 244 GSESEADEEAATVTLSSDIGRVNRASTKSAVKLHEVGPRMTLQLVRIEKGLCSGEVLFSE 303

Query: 302 YG 303
           YG
Sbjct: 304 YG 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2159213	346	PPAN "PETER PAN-like protein"	0.934	0.872	0.775	2.8e-121
MGI|MGI:2178445	470	Ppan "peter pan homolog (Droso	0.832	0.572	0.457	1e-59
UNIPROTKB|E2RGE3	559	PPAN "Uncharacterized protein"	0.832	0.481	0.465	1.7e-59
UNIPROTKB|Q9NQ55	473	PPAN "Suppressor of SWI4 1 hom	0.832	0.568	0.461	6.6e-58
FB|FBgn0010770	460	ppan "peter pan" [Drosophila m	0.832	0.584	0.411	1.9e-53
UNIPROTKB|A8MV53	420	PPAN "HCG2033702, isoform CRA_	0.755	0.580	0.459	1.9e-51
WB|WBGene00003062	573	lpd-6 [Caenorhabditis elegans	0.835	0.471	0.363	1.1e-46
SGD|S000001108	453	SSF1 "Constituent of 66S pre-r	0.681	0.485	0.358	8.5e-43
SGD|S000002720	453	SSF2 "Protein required for rib	0.767	0.547	0.343	2.2e-42
UNIPROTKB|G4NEI7	474	MGG_00087 "Ribosome biogenesis	0.569	0.388	0.378	1.7e-40

TAIR|locus:2159213 PPAN "PETER PAN-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 235/303 (77%), Positives = 258/303 (85%)

Query:     1 MARFRNXXXXXXXXX-XXXXXQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
             M RF+N               Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct:     1 MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query:    60 PHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
             P+TA            DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct:    61 PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query:   120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
             SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct:   121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query:   180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKA 239
             TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKA
Sbjct:   181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKA 240

Query:   240 GYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIF 299
             GYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIF
Sbjct:   241 GYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIF 300

Query:   300 SEY 302
             SEY
Sbjct:   301 SEY 303

GO:0005634 "nucleus" evidence=ISM

MGI|MGI:2178445 Ppan "peter pan homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 125/273 (45%), Positives = 184/273 (67%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct:   149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV-TKAGYG-SESEADDEAATVTLVSDL-GRVNRASTK 269
              ++K +Q  + P++  LQD+S+ + T  G   SE E D E  T  L   + GR N  + +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELLATGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQ 267

Query:   270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
             SAV+L EIGPRMTLQLIK++EG+ +G+++F  +
Sbjct:   268 SAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSF 300

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

UNIPROTKB|E2RGE3 PPAN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 127/273 (46%), Positives = 182/273 (66%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +DLR++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFARGRAGRGVRQLSLDLRRVMEPLTATRLQIRKKNTLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF+I++Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNIYFKLMRLPGGPTLTFRINKYTLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++ V L+T +R +L+NYN D++ +DFRHYSI++ PVG SR
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLINYNPDSQELDFRHYSIKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV-TKAGYG-SESEADDEAATVTLVSDL-GRVNRASTK 269
              ++K +Q  + P++  LQD+S+ + T AG   SE+E D E     L   + GR N  + +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGEHNITELPQAVAGRGNMRAQQ 267

Query:   270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
             SAV+L EIGPRMTLQLIK++EG+  G+++F  +
Sbjct:   268 SAVRLTEIGPRMTLQLIKIQEGVGEGNVLFHSF 300

GO:0016021 "integral to membrane" evidence=IEA

GO:0045028 "G-protein coupled purinergic nucleotide receptor activity" evidence=IEA

UNIPROTKB|Q9NQ55 PPAN "Suppressor of SWI4 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 126/273 (46%), Positives = 179/273 (65%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV-TKAGYG-SESEAD-DEAATVTLVSDLGRVNRASTK 269
              ++K +Q  + P++  LQD+S+ + T AG   SE+E D D   T    +  GR N  + +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQ 267

Query:   270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
             SAV+L EIGPRMTLQLIKV+EG+  G ++F  +
Sbjct:   268 SAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300

GO:0005634 "nucleus" evidence=IDA

GO:0008380 "RNA splicing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0010770 ppan "peter pan" [Drosophila melanogaster (taxid:7227)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 112/272 (41%), Positives = 169/272 (62%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFV  RG     +  L +D R++M P TA            DF++++    V+H  + 
Sbjct:    28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct:    88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
               +HLKL    FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct:   148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEA-DDEAATVTLVSDL-GRVNRASTKS 270
              ++K V+   VP+L    +V DFVTK GY SESEA DDE + V L   L  + N    KS
Sbjct:   208 AVQKIVKG-TVPNLGKCNEVVDFVTKDGYASESEAEDDEQSHVVLAQTLKSKGNLEDKKS 266

Query:   271 AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
             ++KL EIGPR+T+QLIK+EEGL +G +++ ++
Sbjct:   267 SIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDH 298

GO:0007444 "imaginal disc development" evidence=IMP

GO:0002164 "larval development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|A8MV53 PPAN "HCG2033702, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 114/248 (45%), Positives = 161/248 (64%)

Query:    58 MLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIH 117
             M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++ R P GPTLTF++ 
Sbjct:     1 MEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVK 60

Query:   118 EYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVK 177
             +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V 
Sbjct:    61 KYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVN 120

Query:   178 LSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFV- 236
             L+T +R +L++YN D++ +DFRHYSI++ PVG SR ++K +Q  + P++  LQD+S+ + 
Sbjct:   121 LNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASRGMKKLLQE-KFPNMSRLQDISELLA 179

Query:   237 TKAGYG-SESEAD-DEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCS 294
             T AG   SE+E D D   T    +  GR N  + +SAV+L EIGPRMTLQLIKV+EG+  
Sbjct:   180 TGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGE 239

Query:   295 GSIIFSEY 302
             G ++F  +
Sbjct:   240 GKVMFHSF 247

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

WB|WBGene00003062 lpd-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 101/278 (36%), Positives = 171/278 (61%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P   V  RG +   ++ LE DLR L+ P+TA            DF+     +GVT+ ++L
Sbjct:    56 PHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMMVL 115

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             + ++++  LR+ R  QGPTL+FK+ +YSLA  V   Q RP     LFK+SPL+V++GFG 
Sbjct:   116 TSSDASLQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNGFGD 175

Query:   153 GDQ-HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
             G Q HL L     QN+FP+I+++T++L   +R ++++Y+++T  I  RH++IR+   G++
Sbjct:   176 GTQKHLSLVQTFIQNMFPSINVDTIQLGNLKRCLIVSYDEETDEIQMRHFAIRVVASGLN 235

Query:   212 RRLRKFVQSHQ-----VPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDL--GRVN 264
             + ++K +Q+ +     +P+L + +D+SD+    G  S+SE + +   V L  D+  GR  
Sbjct:   236 KSVKKLMQAEKTMGKNIPNLSTYKDISDYFLNPGQLSDSEFEGDQQEVELPQDISEGRGC 295

Query:   265 RASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 302
                 KS V+L EIGPR+TL+L+K+EEG+  G +++ ++
Sbjct:   296 GVGQKSNVRLHEIGPRLTLELVKIEEGIDEGEVLYHKH 333

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

SGD|S000001108 SSF1 "Constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 346 (126.9 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 87/243 (35%), Positives = 132/243 (54%)

Query:    32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTH 88
             IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH
Sbjct:    22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81

Query:    89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
               M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct:    82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query:   146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
             VL+GF T       DQ +   K+   MFQNIFP ++     L++ +R+ ++N +++T  I
Sbjct:   142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEI 201

Query:   197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
               RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct:   202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query:   249 DEA 251
             D+A
Sbjct:   262 DDA 264

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IMP;IPI

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0019843 "rRNA binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0000747 "conjugation with cellular fusion" evidence=IGI

SGD|S000002720 SSF2 "Protein required for ribosomal large subunit maturation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 348 (127.6 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 94/274 (34%), Positives = 146/274 (53%)

Query:    32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTH 88
             IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH
Sbjct:    22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query:    89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
               M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct:    82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query:   146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
             VL+GF T       DQ +   K+   MFQNIFP ++     L++ +RI ++N +++T  I
Sbjct:   142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201

Query:   197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFVTK---AGYGSESEAD 248
               RHY I ++ V +SR L++  +     S  VP+L   +D+S  +       Y SESE +
Sbjct:   202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIE 261

Query:   249 DEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMT 282
             D+A  +  V D   V    +++++  Q+   +MT
Sbjct:   262 DDA--IVRVVDNQDVKAKHSQTSLS-QKTPVKMT 292

GO:0005730 "nucleolus" evidence=IEA;ISS;IDA

GO:0019843 "rRNA binding" evidence=IPI

GO:0000027 "ribosomal large subunit assembly" evidence=ISS;IMP

GO:0000747 "conjugation with cellular fusion" evidence=IGI

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G4NEI7 MGG_00087 "Ribosome biogenesis protein SSF1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 327 (120.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 76/201 (37%), Positives = 118/201 (58%)

Query:    33 PKSFVF--SRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFL 90
             PKS V     G++   + QL  D+R++M P TA            D+L + GP+GVTH L
Sbjct:    34 PKSMVIRIGAGEVGSSVSQLATDVRRVMEPGTASRLKERRANKLRDYLVMCGPLGVTHLL 93

Query:    91 MLSKTESAPY-LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG 149
             + S++ES    LRVA TP+GPTL F++ +YSL  DV +SQ RP+     F TSPL+V++ 
Sbjct:    94 LFSRSESGNVNLRVALTPRGPTLHFRVEKYSLTKDVQKSQRRPKGQGKEFVTSPLLVMNN 153

Query:   150 FGTGD--------QHLK-LTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKL----- 195
             F +          +HL+ LTT +FQ++F  I+     L + +R++L+N  +  ++     
Sbjct:   154 FSSSSADAPSKTPKHLESLTTTVFQSLFAPINPQKTSLKSIRRVLLMNREQSKEMDGSFI 213

Query:   196 IDFRHYSIRLQPVGVSRRLRK 216
             IDFRHY+I  +P G+S+ L++
Sbjct:   214 IDFRHYAITTKPTGISKPLKR 234

GO:0000027 "ribosomal large subunit assembly" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ASU7	PPAN_ARATH	No assigned EC number	0.8217	0.9349	0.8753	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028006001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (318 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•	•		•		0.850
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•	•		•		0.825
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•				0.809
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•	•				0.799
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•				0.785
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.746
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•					0.742
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.741
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)				•					0.734
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•			•		0.725

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
pfam04427	176	pfam04427, Brix, Brix domain	4e-34
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	6e-32

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  122 bits (309), Expect = 4e-34
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 37  VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE 96
           + +  K    LRQL  DLR L     A  L   K+  LKD L  AG  G T  L+  + +
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLF--PNAKKLNRGKKK-LKDLLEFAGEKGDTSLLVFGEHK 57

Query: 97  SAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQH 156
               L + R P GPTL F+I    L  D+       +       + PL+V +GF      
Sbjct: 58  KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKG------SRPLLVFNGFFFTRLG 111

Query: 157 LKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHY----SIRLQPVG 209
           LKL   + Q++FP  +++ + L    R++  +  +DT  I FRHY     + LQ +G
Sbjct: 112 LKLIKELLQDLFPGPNVHKIPLKGGDRVITFSNQRDT--IFFRHYRYKKKVELQEIG 166

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  117 bits (294), Expect = 6e-32
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 36  FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKT 95
            + +  K     RQL  DLR+L  P T +N  + K N L +F +  G       ++   +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKG--NTDLLVVFESS 58

Query: 96  ESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTG 153
                  L + R P GPTL FKI   SL  ++   +        L  + PL++ + F T 
Sbjct: 59  SKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTE 114

Query: 154 DQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR 213
                L   +FQ++FP    +   L   +R+V  +   D   I FRHY I+         
Sbjct: 115 LGK--LIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDY--IFFRHYRIKFGKKKPRVE 170

Query: 214 L 214
           L
Sbjct: 171 L 171

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	100.0
KOG3031	307	consensus Protein required for biogenesis of the r	99.93
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.81
PRK03972	208	ribosomal biogenesis protein; Validated	99.67
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	99.56
PRK00933	165	ribosomal biogenesis protein; Validated	94.77

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-83  Score=599.98  Aligned_cols=300  Identities=52%  Similarity=0.825  Sum_probs=280.1

Q ss_pred             hhhhhhcCCCCCCCcCCCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEE
Q 020678           14 KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLS   93 (323)
Q Consensus        14 ~~k~~~~~~~~~~~~~~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs   93 (323)
                      ++++++......+.++...|.++|+++|-.+..+++|..|||+||+||||.+||++|.|.||||+.+|+++|+|||++|+
T Consensus         7 kK~~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~ls   86 (405)
T KOG2963|consen    7 KKRTHAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLS   86 (405)
T ss_pred             hhhhhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEe
Confidence            34445556667778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCcEEEEeCCCCCeEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHhhcCCCCC
Q 020678           94 KTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAID  172 (323)
Q Consensus        94 ~~~k~~~L~I~rlP~GPTl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~-~~lkli~~mfq~mFp~~~  172 (323)
                      .++...+|+|+|+|.|||++|+|..|++.+||...+|+|+++...|+++||||||||++.. +|++++.+|||+|||+++
T Consensus        87 kt~~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsIn  166 (405)
T KOG2963|consen   87 KTETNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSIN  166 (405)
T ss_pred             cccCceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcC
Confidence            9999999999999999999999999999999999999999998889999999999999986 799999999999999999


Q ss_pred             CCcccCCCCCEEEEEEeecCCCeEEEEEEEEEeecccchhhhHhhhhccC----CCCCccccchhHHhhhcC-CCCCCcc
Q 020678          173 INTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTKAG-YGSESEA  247 (323)
Q Consensus       173 ~~~~~l~~~~RVv~f~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~----~~~l~~~~dis~~~~~~~-~~s~se~  247 (323)
                      +++++|..|+||++++|+.+++.|.||||.|.++++|+||+||+|+++++    +|||++++|||||+.+++ |+||||.
T Consensus       167 v~tvnlntikRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~  246 (405)
T KOG2963|consen  167 VATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEI  246 (405)
T ss_pred             cceeeccceeEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCccccccccc
Confidence            99999999999999999999999999999999999999999999999875    599999999999999987 9999999


Q ss_pred             ccccce-e----------eeeccc-ccccccCCcceeEEEEeCCcceeeEeEeecccCccceeeeecccchHHHHHhh
Q 020678          248 DDEAAT-V----------TLVSDL-GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFH  313 (323)
Q Consensus       248 e~~~~~-v----------~~~~~~-~~~~~~~~~~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt~~~~~~~  313 (323)
                      ||++.+ |          +||++. ++++...++++|+|+||||||||+|+|||||+|+|+||||+||.||++++...
T Consensus       247 e~d~~~~i~~~~~~~~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l  324 (405)
T KOG2963|consen  247 EDDATVRIVDNQDVKEEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKAL  324 (405)
T ss_pred             ccccceEEeccccchhhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHH
Confidence            886553 2          256654 77888888999999999999999999999999999999999999999999854

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.9e-45  Score=332.06  Aligned_cols=209  Identities=23%  Similarity=0.368  Sum_probs=189.8

Q ss_pred             CCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEE-EecCCCCcEEEEeCCCCC
Q 020678           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML-SKTESAPYLRVARTPQGP  110 (323)
Q Consensus        32 ~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~f-s~~~k~~~L~I~rlP~GP  110 (323)
                      .-++||++++.++-+.++||+|+..| +||+....+..++..+-.+.++|...+|+.+++| ++.++.+||||+..|+||
T Consensus        49 K~rvlv~ssRgis~R~RhLm~di~~L-lph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~Gp  127 (299)
T KOG2971|consen   49 KERVLVLSSRGISFRTRHLMKDISSL-LPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGP  127 (299)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHh-cccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCC
Confidence            34689999888999999999999999 6999988888877789999999999999999999 555555999999999999


Q ss_pred             eEEEEEeeeeehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEE
Q 020678          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN  188 (323)
Q Consensus       111 Tl~F~I~n~~~~~di~~~~k~~~~~~~~~~-s~PlLIfng-F~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~  188 (323)
                      |+.|.|+|.+||.|+..+       |||++ ++|+|.|+. |++ .+||++++++|++.|..|+.++.+.+++|||++|+
T Consensus       128 SvkFlv~n~hTM~Elkmt-------gN~lkgsrplLsFd~~Fd~-~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fs  199 (299)
T KOG2971|consen  128 SVKFLVHNVHTMAELKMT-------GNCLKGSRPLLSFDKAFDE-LPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFS  199 (299)
T ss_pred             ceEEehhhhhhHHHhCCc-------cccccCCcceeeccccccc-chHHHHHHHHHHHHcCCCCCCcccCCccceEEEEE
Confidence            999999999999999987       99986 999999999 555 68999999999999999999999999999999999


Q ss_pred             eecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCC
Q 020678          189 YNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAST  268 (323)
Q Consensus       189 ~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~~  268 (323)
                      +  .||.||||+|+|..                                         +|                    
T Consensus       200 i--~D~~IWfRnyqI~~-----------------------------------------~e--------------------  216 (299)
T KOG2971|consen  200 I--LDGKIWFRNYQISE-----------------------------------------EE--------------------  216 (299)
T ss_pred             E--ecCeEEEEEeEecc-----------------------------------------cc--------------------
Confidence            8  88999999999952                                         12                    


Q ss_pred             cceeEEEEeCCcceeeEeEeecccCccceeeeecccchHHHHHhhh
Q 020678          269 KSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFCFHF  314 (323)
Q Consensus       269 ~~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt~~~~~~~~  314 (323)
                        ...|+||||||+|.+++|.+|+|+|.+||.+-.+-++.|++...
T Consensus       217 --d~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~  260 (299)
T KOG2971|consen  217 --DKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVI  260 (299)
T ss_pred             --CcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHH
Confidence              26799999999999999999999999999999888999988553

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-41  Score=302.52  Aligned_cols=212  Identities=25%  Similarity=0.389  Sum_probs=187.4

Q ss_pred             CCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecC-CCCcEEEEeCCCC
Q 020678           31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE-SAPYLRVARTPQG  109 (323)
Q Consensus        31 ~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~-k~~~L~I~rlP~G  109 (323)
                      +..+++|++++.++-+++|||+||..| .||+.++.|+.-+..+.++.++|..++|+++++|..++ ..+|||+++.|+|
T Consensus        29 ~kq~~lilSsRGvsyr~RHL~~Dls~l-~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnG  107 (283)
T COG5154          29 PKQTSLILSSRGVSYRIRHLMKDLSRL-VPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNG  107 (283)
T ss_pred             ccceEEEEecCCchHHHHHHHHHHHHh-CcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCC
Confidence            345789999888999999999999999 69998888888777899999999999999999995544 4599999999999


Q ss_pred             CeEEEEEeeeeehhhhhhhcCCCCCCCCCCC-CccEEEecC-CCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEE
Q 020678          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFK-TSPLIVLSG-FGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLL  187 (323)
Q Consensus       110 PTl~F~I~n~~~~~di~~~~k~~~~~~~~~~-s~PlLIfng-F~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f  187 (323)
                      ||+.|+|+|.+||+|+...       ||+++ ++|.|.|+. |++ .|||+.+++++++.|.-|+....+.+++|||++|
T Consensus       108 ptvkF~~~NlhTMdelNft-------gN~lKgsrpvLsFdk~Fe~-~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f  179 (283)
T COG5154         108 PTVKFRMHNLHTMDELNFT-------GNSLKGSRPVLSFDKEFED-IPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCF  179 (283)
T ss_pred             CeEEEEEeccchHhhcCCc-------cccccCCcceEeecccccc-chHHHHHHHHHHHhccCCCcccccccchhheEEE
Confidence            9999999999999999987       89986 999999999 666 5799999999999999988888899999999999


Q ss_pred             EeecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccC
Q 020678          188 NYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAS  267 (323)
Q Consensus       188 ~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~  267 (323)
                      ++  .||.||+|.|.|..                                        |.||                  
T Consensus       180 ~i--~DgkIWvR~YeI~r----------------------------------------e~ed------------------  199 (283)
T COG5154         180 FI--LDGKIWVRCYEIGR----------------------------------------ENED------------------  199 (283)
T ss_pred             EE--ecCeEEEEEEeecc----------------------------------------cccc------------------
Confidence            88  89999999999963                                        2233                  


Q ss_pred             CcceeEEEEeCCcceeeEeEeecccCccceeeeecccchHHHHH
Q 020678          268 TKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCIFYMFC  311 (323)
Q Consensus       268 ~~~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt~~~~~  311 (323)
                      ....|+|+||||||+|.+++|.||+|+|.+||.+-..-+++|++
T Consensus       200 ~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vr  243 (283)
T COG5154         200 KSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVR  243 (283)
T ss_pred             ccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHH
Confidence            11249999999999999999999999999999887666777775

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=7e-42  Score=304.76  Aligned_cols=157  Identities=33%  Similarity=0.564  Sum_probs=75.7

Q ss_pred             EEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeEEEE
Q 020678           37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK  115 (323)
Q Consensus        37 V~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl~F~  115 (323)
                      |++++++++.+++|++||+.+|.|+ +..++..+.|.+++++++|..++|+|+++|++++++ ++|||+|+|+|||++|+
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~~p~-s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~   79 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLFPPN-SKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS   79 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS-TT-EEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCC-eEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence            6889999999999999999997355 667776676799999999999999999999888875 99999999999999999


Q ss_pred             EeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCc-hhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeecCCC
Q 020678          116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK  194 (323)
Q Consensus       116 I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~-~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~~~d  194 (323)
                      |++|++++|++++.+.      ..+++|+|||+||+++. ++++++++||++|||++.++.+.+.++||||+|++  ++|
T Consensus        80 I~~~~~~~~~~~~~~~------~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~--~~d  151 (191)
T PF04427_consen   80 IENYKLMKDIKSSSKR------PKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSN--QRD  151 (191)
T ss_dssp             EEEEE-HHHHT-------------S---EEEEE-----------------------------------------------
T ss_pred             EEeEEEhhHhcccccC------CCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccc--ccc
Confidence            9999999999976431      23678999999988763 78999999999999999999999999999999987  666


Q ss_pred             e-EEEEEEEE
Q 020678          195 L-IDFRHYSI  203 (323)
Q Consensus       195 ~-I~fRhY~I  203 (323)
                      . |||||| |
T Consensus       152 ~~I~fR~Y-i  160 (191)
T PF04427_consen  152 FVIFFRHY-I  160 (191)
T ss_dssp             ----------
T ss_pred             cccccccc-c
Confidence            6 999999 7

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=2.7e-36  Score=273.53  Aligned_cols=195  Identities=22%  Similarity=0.401  Sum_probs=171.8

Q ss_pred             CCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCC
Q 020678           30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ  108 (323)
Q Consensus        30 ~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~  108 (323)
                      +.+||+||++++.+|+++.+|+++|+-+ +||+ .++. |.+..+..+++.|..+|+|++++++++++. ..|.|+|+|.
T Consensus        80 ~~dPKimvTTSR~PSsrL~~FaKelkLv-fPNa-qr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPf  156 (290)
T KOG2781|consen   80 EEDPKIMVTTSRDPSSRLKMFAKELKLV-FPNA-QRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPF  156 (290)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHhheEe-ccCh-hhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCC
Confidence            3679999999999999999999999988 8995 4664 556699999999999999999999999998 9999999999


Q ss_pred             CCeEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEE
Q 020678          109 GPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN  188 (323)
Q Consensus       109 GPTl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~  188 (323)
                      |||+.|.+.|+.+.+||+..       |.+...+|+||||||++..  +++++++|..+||.|..      ..+|||+|.
T Consensus       157 GPTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~l--G~Rv~~iLkhLFP~pk~------ds~Rvvtf~  221 (290)
T KOG2781|consen  157 GPTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKL--GKRVKTILKHLFPVPKD------DSKRVVTFA  221 (290)
T ss_pred             CCceEeeeeeeeeccccccc-------ccccccCceEEeccccchH--HHHHHHHHHHhCCCCcC------CcccEEEEe
Confidence            99999999999999999987       7788889999999999976  58999999999997643      679999765


Q ss_pred             eecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCC
Q 020678          189 YNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRAST  268 (323)
Q Consensus       189 ~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~~  268 (323)
                        +.+|.|.||||.|...                                                             .
T Consensus       222 --N~~DyIsFRhhvy~~~-------------------------------------------------------------~  238 (290)
T KOG2781|consen  222 --NRNDYISFRHHVYKKT-------------------------------------------------------------D  238 (290)
T ss_pred             --cCCceEEEEEEEEecC-------------------------------------------------------------C
Confidence              5899999999999741                                                             1


Q ss_pred             cceeEEEEeCCcceeeEeEeecccCc---cceee--eecccc
Q 020678          269 KSAVKLQEIGPRMTLQLIKVEEGLCS---GSIIF--SEYGMC  305 (323)
Q Consensus       269 ~~~v~L~EIGPR~tL~LikI~~G~~~---G~vly--~~~v~k  305 (323)
                      ...+.|.|+||||.|+|+.|-.|+++   +++.|  +.|.+.
T Consensus       239 ~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nT  280 (290)
T KOG2781|consen  239 GKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNT  280 (290)
T ss_pred             CceEEEeeccccceeeeeeeeecceeccccceeEEecchhcc
Confidence            13589999999999999999999986   66665  678763

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=100.00  E-value=3e-36  Score=276.12  Aligned_cols=197  Identities=21%  Similarity=0.330  Sum_probs=171.1

Q ss_pred             CCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCC
Q 020678           31 KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG  109 (323)
Q Consensus        31 ~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~G  109 (323)
                      ..||+||+...........|+..|+.+ +||+....  +++..++.++++|...++|+++++.+.++. +.|.|+++|+|
T Consensus        95 ~spKvlITt~~~~~~~t~~~~~eL~~i-iPNs~~~~--R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~G  171 (302)
T KOG2780|consen   95 FSPKVLITTSKNPKRTTYKFASELLDI-IPNSTVKK--RDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNG  171 (302)
T ss_pred             cCccEEEEcCCCCcccHHHHHHHHHHh-CCCceEEe--cCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCC
Confidence            459999999888888999999999999 89987654  557799999999999999999999866655 99999999999


Q ss_pred             CeEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEe
Q 020678          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY  189 (323)
Q Consensus       110 PTl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~  189 (323)
                      ||++|.+++|++.+|+...       |....+.|.||+|||+++.+  ..|++||++|||..+ +    -.++|||+||+
T Consensus       172 PT~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG--~~v~r~f~sLfp~~p-~----f~gRrvvtFhn  237 (302)
T KOG2780|consen  172 PTAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLG--MTVGRLFASLFPHDP-Q----FTGRRVVTFHN  237 (302)
T ss_pred             CceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhh--HHHHHHHHHhCCCCc-c----ccceeEEEEEe
Confidence            9999999999999999987       77788999999999999875  489999999999752 2    16899998877


Q ss_pred             ecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeecccccccccCCc
Q 020678          190 NKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTK  269 (323)
Q Consensus       190 ~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~~~~~~  269 (323)
                        ++|.|+||||+|.++.                                                            +.
T Consensus       238 --QrD~IfFRhhRY~Fke------------------------------------------------------------e~  255 (302)
T KOG2780|consen  238 --QRDYIFFRHHRYEFKE------------------------------------------------------------EE  255 (302)
T ss_pred             --cCceEEEEEEEEeecc------------------------------------------------------------cc
Confidence              9999999999999832                                                            01


Q ss_pred             ceeEEEEeCCcceeeEeEeecccCccceeeeecccch
Q 020678          270 SAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGMCI  306 (323)
Q Consensus       270 ~~v~L~EIGPR~tL~LikI~~G~~~G~vly~~~v~kt  306 (323)
                      ..+.|+|+||||||+|.++++|.|+....-+.|+.+.
T Consensus       256 ~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~  292 (302)
T KOG2780|consen  256 IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK  292 (302)
T ss_pred             cccchhhcCCceeeeehhhhhccccccceeeeeeecc
Confidence            3688999999999999999999998655555666665

>smart00879 Brix Brix domain

Probab=100.00  E-value=2.1e-33  Score=246.74  Aligned_cols=159  Identities=29%  Similarity=0.460  Sum_probs=133.1

Q ss_pred             EEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccC-CCcEEEEEEec-CCC-CcEEEEeCCCCCeE
Q 020678           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKT-ESA-PYLRVARTPQGPTL  112 (323)
Q Consensus        36 lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~-~~T~li~fs~~-~k~-~~L~I~rlP~GPTl  112 (323)
                      ||++++++++.+++|++||+.++.|+++ .  .++++.+.++.+.|... +++++++++.+ +++ .+|||+++|+|||+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~-~--~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l   77 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTK-I--NRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL   77 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEe-e--cccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence            5889999999999999999999645543 3  34556777777776665 78788888664 444 99999999999999


Q ss_pred             EEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeecC
Q 020678          113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKD  192 (323)
Q Consensus       113 ~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~~  192 (323)
                      +|.|.++.+.+|+...+..    +...+++|+|||+||+++.+  +++++||++|||.+.+..+++++++|||+|++  +
T Consensus        78 ~f~i~~v~~~~~~~~~~~~----~~~~~~~P~li~~~~~~~~~--~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~--~  149 (180)
T smart00879       78 DFKILNVSLRKELKGFKTG----NCLTGSRPLLIFNNFFTELG--KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSN--Q  149 (180)
T ss_pred             EEEEECcccHhhhhhhhcC----CCcCCCccEEEECCCCCchH--HHHHHHHHHHCCCCCccccccCCCCEEEEEEe--c
Confidence            9999999999999975331    22356899999999988753  89999999999999999999999999999987  6


Q ss_pred             CCeEEEEEEEEEe
Q 020678          193 TKLIDFRHYSIRL  205 (323)
Q Consensus       193 ~d~I~fRhY~I~~  205 (323)
                      +|.||||||.|.+
T Consensus       150 ~~~I~~R~y~i~~  162 (180)
T smart00879      150 DDYIFFRHYRIKF  162 (180)
T ss_pred             CCEEEEEEEEEEc
Confidence            6899999999974

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=5.3e-26  Score=210.02  Aligned_cols=182  Identities=18%  Similarity=0.275  Sum_probs=157.2

Q ss_pred             hhhhcCCCCCCCcCCCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHh------hcccCCCcEE
Q 020678           16 FVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN------VAGPMGVTHF   89 (323)
Q Consensus        16 k~~~~~~~~~~~~~~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~------~a~~~~~T~l   89 (323)
                      +.+++...++++.+++....+++.+..++..+.+.|.|+..+..|.+. .  ..++|.+.+|.+      .+.+++|+-+
T Consensus        11 ~~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i-~--~~rkN~i~pFEd~ssleffseK~D~slf   87 (307)
T KOG3031|consen   11 RAKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEI-R--YNRKNNIHPFEDPSSLEFFSEKNDCSLF   87 (307)
T ss_pred             hhHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCcee-e--eccCCCcccCCCCchHHHHhhhhhhhhh
Confidence            345557778889999999999999999999999999999999999965 4  467889999865      5788999666


Q ss_pred             EEEEecCCC-CcEEEEeCCCCCe---EEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecC--CCCCchhhHHHHHH
Q 020678           90 LMLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTIM  163 (323)
Q Consensus        90 i~fs~~~k~-~~L~I~rlP~GPT---l~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfng--F~t~~~~lkli~~m  163 (323)
                      ++.++++++ +||+|||++++-.   ++|+|+||.+.+|+..+       +...+++|+|+|+|  |.+. +.+++++++
T Consensus        88 v~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~-------k~~~gtKP~l~f~G~~f~~~-~~~krlknL  159 (307)
T KOG3031|consen   88 VLGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAA-------KITEGTKPMLIFQGAVFDQH-PEYKRLKNL  159 (307)
T ss_pred             hhccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhcc-------CCCCCCCceEEEecchhccC-hHHHHHHHH
Confidence            666888888 9999999999998   59999999999999987       34567999999999  6664 579999999


Q ss_pred             HhhcCCCCCCCcccCCCCCEEEEEEeecCCCeEEEEEEEEEeeccc
Q 020678          164 FQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVG  209 (323)
Q Consensus       164 fq~mFp~~~~~~~~l~~~~RVv~f~~~~~~d~I~fRhY~I~~~~~g  209 (323)
                      |.++|.++.++.+.|.++++|+.|+... +..|+||||.+..++||
T Consensus       160 ~vDfFrge~vd~v~l~Gl~~v~vfta~~-~~~v~~r~Y~lklkKs~  204 (307)
T KOG3031|consen  160 FVDFFRGEKVDKVRLAGLEYVIVFTATE-ETNVLFRVYRLKLKKSG  204 (307)
T ss_pred             HHHHHcCCcccceeeccccEEEEEEeec-Cceeeeeeeeeeeeecc
Confidence            9999999999999999999999988643 33599999999987654

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.81  E-value=1.1e-18  Score=156.52  Aligned_cols=181  Identities=19%  Similarity=0.320  Sum_probs=151.5

Q ss_pred             CCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeC-CCC
Q 020678           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQG  109 (323)
Q Consensus        32 ~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rl-P~G  109 (323)
                      .|+.+||+++++|.++++|++||..+ +|++....  +.+..+.++.+.|...|.++++++++.++. ..|.+.++ |.|
T Consensus         1 ~~~~liTTSRkPS~Rtr~Fak~L~~~-lp~~~~~~--rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~   77 (191)
T COG2136           1 MPKMLLTTSRKPSRRTRSFAKDLSRV-LPNAYFLR--RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEG   77 (191)
T ss_pred             CCcEEEEecCCccHHHHHHHHHHHHh-CCcceEEe--cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCC
Confidence            38999999999999999999999999 79987533  346689999999999999999999999988 99999999 999


Q ss_pred             CeEEEEEeeeeehhhhhhhcCCCCCCCC-CCCCccEEEecCCCCCchhhHHHHHHHhhc----CCCCCCCcccCCCCCEE
Q 020678          110 PTLTFKIHEYSLAVDVAQSQLRPRCPQD-LFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAIDINTVKLSTCQRI  184 (323)
Q Consensus       110 PTl~F~I~n~~~~~di~~~~k~~~~~~~-~~~s~PlLIfngF~t~~~~lkli~~mfq~m----Fp~~~~~~~~l~~~~RV  184 (323)
                      |++.|.+.++++.+++...       +. .-.+-|++|+++|.+... ...+.++|+.+    |++..    .. ....|
T Consensus        78 ~~~~f~l~~v~l~re~~~~-------~~~~~~~~~~~I~~~~~~~~g-~~~~~~~~~~~~~~~f~~~~----~~-~~~~v  144 (191)
T COG2136          78 LTFSFKLSGVKLRREIPVL-------GPKSRLHGPELIFNNFTTLLG-FLKVAEAFSELLLVKFVPNP----AW-EHELV  144 (191)
T ss_pred             ceEEEEEecceEEEecccc-------CCcccCCCCceeeeccccccc-chhhHHHHHhhcccccccCc----cc-ceeee
Confidence            9999999999999999986       33 335789999999999864 47889999999    76531    11 34566


Q ss_pred             EEEEeecCCCeEEEEEEEEEeecccchhhhHhhhhccCCCCCccccchhHHhhhcCCCCCCccccccceeeeeccccccc
Q 020678          185 VLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVN  264 (323)
Q Consensus       185 v~f~~~~~~d~I~fRhY~I~~~~~g~s~~vk~l~~~~~~~~l~~~~dis~~~~~~~~~s~se~e~~~~~v~~~~~~~~~~  264 (323)
                      +.+  ..+++.+.+|.|.....                                                          
T Consensus       145 ~~~--~~~~~f~~~~~~~~~~~----------------------------------------------------------  164 (191)
T COG2136         145 ATG--ANKGDFKSLRRHRRVFE----------------------------------------------------------  164 (191)
T ss_pred             eec--cccceEEEEEeeeeEee----------------------------------------------------------
Confidence            655  44888999988877641                                                          


Q ss_pred             ccCCcceeEEEEeCCcceeeEeEeeccc
Q 020678          265 RASTKSAVKLQEIGPRMTLQLIKVEEGL  292 (323)
Q Consensus       265 ~~~~~~~v~L~EIGPR~tL~LikI~~G~  292 (323)
                          ...+++.|+||||+|++-.+++|.
T Consensus       165 ----~~~~~~~~vgp~~~~r~~~~~~g~  188 (191)
T COG2136         165 ----EDGIGLEEVGPRLTLRLWRMEDGR  188 (191)
T ss_pred             ----eeeeeEEEeCceeeeehhhhhhcc
Confidence                135899999999999999999984

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.67  E-value=8.3e-16  Score=138.98  Aligned_cols=125  Identities=14%  Similarity=0.253  Sum_probs=104.3

Q ss_pred             EEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCC---C
Q 020678           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQG---P  110 (323)
Q Consensus        35 ~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~G---P  110 (323)
                      ++||++.++|+.+++|++||..+ +||+.. + .|++..++++++.|...|+|+++++++.++. +.|.|++||+|   |
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v-~Pns~~-i-~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP   78 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERV-FPNSLY-L-TRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY   78 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHh-CCCCEE-E-ecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence            58999999999999999999999 799753 3 4678899999999999999999999999888 99999999855   5


Q ss_pred             eEEEEEeeeeehhhhh--hhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCC
Q 020678          111 TLTFKIHEYSLAVDVA--QSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA  170 (323)
Q Consensus       111 Tl~F~I~n~~~~~di~--~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~  170 (323)
                      |++|+|+|+.+.+|+.  ..       +....+.|++|.++|.+...+.+.. ..+..-+..
T Consensus        79 Ta~FkLsnV~l~~ei~~~~~-------~~~s~~~p~iItts~kt~~g~~~~A-k~lA~eLgi  132 (208)
T PRK03972         79 LGYLYLHGIKLQREMGFRNL-------RPIREDMPLVITTAKRVGLDHMAFA-QVFAELTGG  132 (208)
T ss_pred             eEEEEEccEEEHHHcccCCC-------CCccccccEEEEcCCCCCHHHHHHH-HHHHHHhCC
Confidence            9999999999999994  34       5567799999999999986543333 334444443

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=5e-15  Score=135.06  Aligned_cols=186  Identities=14%  Similarity=0.190  Sum_probs=147.2

Q ss_pred             cCccCchhhhhhhhhcCCCCCCCcCCCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHh-----
Q 020678            5 RNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN-----   79 (323)
Q Consensus         5 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~-----   79 (323)
                      |.-|.+-.|.   ++++..++|+.+++....+++.+-..++.+-..+-|+..+..|...   ..-++|+|.+|.+     
T Consensus         3 r~vkpkNaR~---kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~i---~f~rkn~ihpfEd~SplE   76 (316)
T COG5106           3 RAVKPKNARV---KRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKEI---GFIRKNTIHPFEDTSPLE   76 (316)
T ss_pred             cccCCcchHH---HHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccchhh---ccccCCcccccccCCHHH
Confidence            3334444444   4668999999999999999999988899999999999999999854   3467899998876     


Q ss_pred             -hcccCCCcEEEEEEecCCC-CcEEEEeCCCCCe---EEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecC--CCC
Q 020678           80 -VAGPMGVTHFLMLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGT  152 (323)
Q Consensus        80 -~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPT---l~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfng--F~t  152 (323)
                       ++.+++|.-..+|++.+++ +||.|+|..+--.   ++|.|.+|.+..|+..+       +...+.+|.++|.|  |.+
T Consensus        77 ffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~-------~~~~g~Kpmv~fQg~~fd~  149 (316)
T COG5106          77 FFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECA-------GPELGMKPMVVFQGINFDA  149 (316)
T ss_pred             HHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhcc-------CCccCCceEEEEecccccc
Confidence             4788999888888666666 9999999887766   58999999999999876       67788999999999  555


Q ss_pred             CchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeec--CCC----eEEEEEEEEE
Q 020678          153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNK--DTK----LIDFRHYSIR  204 (323)
Q Consensus       153 ~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~--~~d----~I~fRhY~I~  204 (323)
                       .|.+++|+++|-++|.+..-+.....+..+||..+-..  ++.    .+.||.|...
T Consensus       150 -hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k  206 (316)
T COG5106         150 -HPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTK  206 (316)
T ss_pred             -chHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecc
Confidence             46899999999999998766555556778888765311  121    2678888765

>PRK00933 ribosomal biogenesis protein; Validated

Probab=94.77  E-value=0.18  Score=44.57  Aligned_cols=75  Identities=13%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             EEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeEEE
Q 020678           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF  114 (323)
Q Consensus        36 lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl~F  114 (323)
                      +||++.+++..+.+++++|...+  ++..  -.|++.+++++.+.|..   .+++++++.++. ..|.|...-..+.+.+
T Consensus         2 IITTSrkPs~~t~~fAkeLa~~l--n~~y--v~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~   74 (165)
T PRK00933          2 IITTSRKPSQRTRSLVKDLARFL--NCKY--VNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY   74 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh--CCEE--EccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence            78899999999999999999994  6543  45778899998765543   488999998877 8999999776666666


Q ss_pred             EEe
Q 020678          115 KIH  117 (323)
Q Consensus       115 ~I~  117 (323)
                      .+.
T Consensus        75 ~~~   77 (165)
T PRK00933         75 RLS   77 (165)
T ss_pred             EEE
Confidence            553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 74/256 (28%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
             KS + K++  +DHI                   +        +L        L  K+ 
Sbjct: 41  MPKSILSKEE--IDHII-------------MSKDAVSGT----LRLFW-----TLLSKQE 76

Query: 72  NNLKDFLNVAGPMGVTH-FLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQL 130
             ++ F  V   + + + FLM           +    + P++  +++          +Q+
Sbjct: 77  EMVQKF--VEEVLRINYKFLMS---------PIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 131 -------RPRCPQDL------FKTSPLIVLSG-FGTGDQHL--------KLTTIMFQNIF 168
                  R +    L       + +  +++ G  G+G   +        K+   M   IF
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 169 PAIDINTVKLSTCQRIVL-------LNYNKDTKLID--FRHYSIRLQPVGVSRRLRKFVQ 219
                  + L  C            L Y  D           +I+L+   +   LR+ ++
Sbjct: 186 ------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 220 SHQVPD-LRSLQDVSD 234
           S    + L  L +V +
Sbjct: 240 SKPYENCLLVLLNVQN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.86
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	98.96

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.86  E-value=8.3e-22  Score=178.83  Aligned_cols=131  Identities=13%  Similarity=0.103  Sum_probs=116.9

Q ss_pred             CCCCcEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCC
Q 020678           30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ  108 (323)
Q Consensus        30 ~~~pk~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~  108 (323)
                      ...||+|||+++++++++++|++||..+ +||+.+ + .|++..++++++.|..++||+++++++.++. .+|||+++|.
T Consensus        31 ~~~pKvLITTSr~pS~r~r~fakeL~~~-lPns~~-i-~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~  107 (217)
T 2cxh_A           31 VGGYRILVTTSRRPSPRIRSFVKDLSAT-IPGAFR-F-TRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEG  107 (217)
T ss_dssp             --CCEEEEEESSSCCHHHHHHHHHHHTT-STTEEE-C-CCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHHH-CCCCEE-e-ecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCC
Confidence            3589999999999999999999999999 699753 3 3677899999999999999999999888877 9999999999


Q ss_pred             C---C-eEEEEEeeeeehhhhhhhcCCCCCCCCCC-CCccEEEecCCCCCchhhHHHHHHHhhcCCCCCC
Q 020678          109 G---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI  173 (323)
Q Consensus       109 G---P-Tl~F~I~n~~~~~di~~~~k~~~~~~~~~-~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~  173 (323)
                      |   | |++|+|+|+.+++|++..       |+++ +++|+|+ ++|+++  ++.++++||+++||.|..
T Consensus       108 G~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~--~g~~i~~~f~~lFp~P~~  167 (217)
T 2cxh_A          108 PERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSG--VAVEFADAFVIAFHARLK  167 (217)
T ss_dssp             SSCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSS--THHHHHHHHHHHHCCBSS
T ss_pred             CCCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCc--hHHHHHHHHHHHcCCCCC
Confidence            9   9 999999999999999987       5564 5899999 999986  578999999999998654

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=98.96  E-value=3.7e-09  Score=91.17  Aligned_cols=85  Identities=13%  Similarity=0.142  Sum_probs=72.3

Q ss_pred             cEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeE
Q 020678           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL  112 (323)
Q Consensus        34 k~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl  112 (323)
                      |.+||++.++++.+.+++++|..++  ++.. + .|++..++++++.|...    +++++++++. ..|.|+++|.|||+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l--n~~~-v-~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~   72 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM--GWRY-I-NRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG   72 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH--TCEE-C-CCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--CCEE-E-eeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence            5689999999999999999999994  6542 3 46778999999877543    7777777776 89999999999999


Q ss_pred             EEEEeeeeehhhhhh
Q 020678          113 TFKIHEYSLAVDVAQ  127 (323)
Q Consensus       113 ~F~I~n~~~~~di~~  127 (323)
                      +|++ |+.+.+|+..
T Consensus        73 ~f~~-nv~l~~~~~~   86 (156)
T 1w94_A           73 YILF-NPSFEMKKPE   86 (156)
T ss_dssp             EEEE-EEEECSSCCC
T ss_pred             EEEE-ceEEcccCcc
Confidence            9998 9999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	5e-18

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 78.0 bits (192), Expect = 5e-18
 Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 23/179 (12%)

Query: 47  LRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVART 106
           +R    DL   +          +   ++++    A   G    +++ +    P +     
Sbjct: 16  IRSFVKDLSATIPGAFRFT---RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYA 72

Query: 107 PQGP-----TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTT 161
            +GP      ++F +   SL+ +           +         + SG            
Sbjct: 73  VEGPERPDNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAV---EFADAF 126

Query: 162 I-MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ 219
           +  F            + +     V+ + +  T  + FR+      PVG   RL K  +
Sbjct: 127 VIAFHARLKP-----PEAAGYVEAVIESLDARTVAVTFRYGGA---PVGPMLRLGKPAE 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	99.95
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.74

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.95  E-value=3.4e-28  Score=213.22  Aligned_cols=160  Identities=13%  Similarity=0.102  Sum_probs=138.0

Q ss_pred             cEEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCCCcEEEEeCCCCC---
Q 020678           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGP---  110 (323)
Q Consensus        34 k~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~~~L~I~rlP~GP---  110 (323)
                      |+|||++.++++.+++|++||+.+ +||+..  ..|+++.++|++++|..+||||+++|+++++..+|+++++|+||   
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v-~Pns~~--~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p~l~i~~lP~GP~~~   79 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSAT-IPGAFR--FTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERP   79 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTT-STTEEE--CCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh-CCCCEE--eecCCCcHHHHHHHHHHCCCCeEEEEEccCCCCcEEEEECCCCCCCc
Confidence            789999999999999999999999 599764  45788999999999999999999999999888899999999999   


Q ss_pred             --eEEEEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEE
Q 020678          111 --TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN  188 (323)
Q Consensus       111 --Tl~F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~  188 (323)
                        |++|+|+|+++.+|+....   ...+....+.|++|||||.+.++  .++.++|+.+||++..      ..++|++|+
T Consensus        80 ~~t~~F~l~nv~l~~e~~~~~---~~~~~~t~~~p~lilnnf~t~Lg--~~~~~~f~~lf~~p~~------~~~~vvt~~  148 (180)
T d2cxha1          80 DNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAVEFA--DAFVIAFHARLKPPEA------AGYVEAVIE  148 (180)
T ss_dssp             EEEEEEEEEEEECHHHHTCCC---CCCCSCCEEEEEESSSSTHHHHH--HHHHHHHCCBSSCCSS------SCEEEEEEE
T ss_pred             cceEEEEEEEEEEehhhcccc---CCCCCCccccchhHhcccchHHH--HHHHHHHHhhCCCchh------cCcEEEEEE
Confidence              9999999999999997642   12355666899999999999764  5999999999987532      468888876


Q ss_pred             eecCCCeEEEEEEEEEeeccc
Q 020678          189 YNKDTKLIDFRHYSIRLQPVG  209 (323)
Q Consensus       189 ~~~~~d~I~fRhY~I~~~~~g  209 (323)
                      .  ++|.|++|+|++...+.|
T Consensus       149 n--~~d~if~~~~~~~~~~~G  167 (180)
T d2cxha1         149 S--LDARTVAVTFRYGGAPVG  167 (180)
T ss_dssp             E--EETTEEEEEEECSSSEEE
T ss_pred             e--cCCeEEEEEEecCCCCCC
Confidence            5  888999999987665555

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=7.7e-19  Score=149.11  Aligned_cols=133  Identities=11%  Similarity=0.089  Sum_probs=111.6

Q ss_pred             EEEEccCCCChHHHHHHHHHhhccCCcceeccccccCcchhhHHhhcccCCCcEEEEEEecCCC-CcEEEEeCCCCCeEE
Q 020678           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLT  113 (323)
Q Consensus        35 ~lV~~~g~~s~~~~~L~kDLr~lm~P~ta~~lk~~kkn~lkdf~~~a~~~~~T~li~fs~~~k~-~~L~I~rlP~GPTl~  113 (323)
                      +|||++.++++.+++|++||..+ +|++  .+ .|++..++++++.|    .|++++++++++. ..|.| ++|+|||++
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i-~P~~--~~-~Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~   71 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRI-MGWR--YI-NRGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERG   71 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHH-HTCE--EC-CCTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHh-CCCe--EE-EcCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEE
Confidence            48999999999999999999999 6985  33 36778999999876    5899999999988 77877 999999999


Q ss_pred             EEEeeeeehhhhhhhcCCCCCCCCCCCCccEEEecCCCCCchhhHHHHHHHhhcCCCCCCCcccCCCCCEEEEEEeecCC
Q 020678          114 FKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDT  193 (323)
Q Consensus       114 F~I~n~~~~~di~~~~k~~~~~~~~~~s~PlLIfngF~t~~~~lkli~~mfq~mFp~~~~~~~~l~~~~RVv~f~~~~~~  193 (323)
                      |.+.|+++.+|                 +|.|++|+|.+..+  ..++++|..+||.+...    ..-++|++|+.  ++
T Consensus        72 f~l~~v~l~~e-----------------~p~li~~~f~t~lg--~~v~~~L~~lf~~~~~~----~~~~~~itf~n--~~  126 (154)
T d1w94a1          72 YILFNPSFEMK-----------------KPELADKAVRVSSC--PPGSEGLCNLMGLEVDE----SSSRDAWSIRT--DE  126 (154)
T ss_dssp             EEEEEEEECSS-----------------CCCCSSCCCEESCC--CTTCHHHHHHHTCEECC----SCCTTEEEEEC--CS
T ss_pred             EEEeeEEcccc-----------------CCcCcccccccccc--hhHHHHHHHHcCCChhh----cceeeEEEEec--CC
Confidence            99999976433                 79999999999864  58899999999976432    23345888765  88


Q ss_pred             CeEEEEEE
Q 020678          194 KLIDFRHY  201 (323)
Q Consensus       194 d~I~fRhY  201 (323)
                      |.|+++||
T Consensus       127 d~i~~~~~  134 (154)
T d1w94a1         127 EYAWVMEL  134 (154)
T ss_dssp             SSSEEEEE
T ss_pred             CEEEEEEE
Confidence            99999999