Citrus Sinensis ID: 020682

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEEEEcccccEEEEccEEEEEcccccccccEEEcccccEEEccccccccccccEEEcccccEEEEEEEcccccccccccEEEEEcccccccEEEccccccccccEEEEEEccEEEEEEccccccccccEEEEEEccccEEEEcccccccccccEEEEEEEccEEEEEcccccccccccccEEEEEEcccccEEccccccccccccEEEEEccEEEEEcccccccccccEEEEEcEEEccccccccEEEcccccccccccEEEEEccEEEEEccccccccccccccEEEccccEEEEccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHEEEEHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccEEEccccccccccccEEEEEEccccccccccccHHHcccccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEcccccccccccccccccccccEEEEEcccEEEEEEccccccccccccEEEEEccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccEEEEEccEEEEEEccccccccccccccEEcccHHHHEEHEEHHHcc
Coil and Loop (DISEMBL)
marfdhhnkhtytktgCWFLCVLGLLGAALIADFmwasssssfssssahLSVASNWALEKSGVvviphvnatkidrqrESVAVIDKKGQDAERFLSAtfadlpapdleweqmpsapvprldgaAIQIKNLFYVFAGygsldyvhshvdvynftdnkwvdrfdmpkdmahshlgvvsDGRYIYIVsgqygpqcrgptsrtfvldsetrkwdsipplpspryspatqlwrgrlhvmggskenrhtpglehwsiAVKDGKALEKAWrteipiprggphracfvfndrlfvvggqegdfmakpgspifkcsrrHEFMVMFICWMMK
Flexible Loop (DISEMBL)
marfdhhnkhtytktgCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHvnatkidrqresvAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGqygpqcrgptSRTFVLDsetrkwdsipplpspryspATQLWRGRLHVMGGSkenrhtpglehwsiAVKDGKALEKAWRTeipiprggphRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Low Complexity Region (SEG)
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWasssssfssssahlsvasNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Disordered region (IsUnstruct)
*********HTYTKTGCWFLCVLGLLGAALIADFMWA************LSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDK*****ERFLSATFADLPAPDLEWE*****PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD********************TQLWRGRLHVM*********PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWM**
Disordered Region (DISOPRED)
***********YTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGV**********IDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Disordered Region (DISEMBL)
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWAS*************VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Disordered Region (DISPRO)
*************KTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFMVMFICWMMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q9LK31	426	Kelch repeat-containing p	no	no	0.878	0.664	0.641	1e-105
Q5ZKD9	610	Kelch-like protein 20 OS=	yes	no	0.537	0.283	0.254	8e-10
Q6DFF6	604	Kelch-like protein 20 OS=	N/A	no	0.537	0.286	0.254	9e-10
Q8VCK5	604	Kelch-like protein 20 OS=	yes	no	0.537	0.286	0.248	2e-09
D3Z8N4	609	Kelch-like protein 20 OS=	yes	no	0.537	0.284	0.248	3e-09
Q9Y2M5	609	Kelch-like protein 20 OS=	yes	no	0.537	0.284	0.248	3e-09
Q08DK3	609	Kelch-like protein 20 OS=	yes	no	0.537	0.284	0.248	3e-09
Q5R7B8	609	Kelch-like protein 20 OS=	yes	no	0.537	0.284	0.248	3e-09
B4J045	624	Kelch-like protein diablo	N/A	no	0.537	0.277	0.232	6e-09
B4L0G9	617	Kelch-like protein diablo	N/A	no	0.490	0.256	0.251	6e-09

>sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 223/293 (76%), Gaps = 10/293 (3%)

Query: 20  LCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE 79
           L    +LG   IA F+    SSS  S SA  S+   W       + IP +++  +  Q+ 
Sbjct: 22  LYFTSVLGIGFIAAFL--CLSSSIPSVSAVFSI---WVPVNRPEIQIPIIDSKIV--QKR 74

Query: 80  SVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS 139
           S    D K  D  RFLSA FAD+PAP+L+WE+M SAPVPRLDG ++QI NL YVF+GYGS
Sbjct: 75  SKQSNDTK--DHVRFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFSGYGS 132

Query: 140 LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT 199
           LDYVHSHVDV+NFTDNKW DRF  PK+MA+SHLG+V+DGRY+Y+VSGQ GPQCRGPTSR+
Sbjct: 133 LDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGPTSRS 192

Query: 200 FVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKAL 259
           FVLDS T+ W   P LP+PRY+PATQ+WRGRLHVMGGSKENR+    +HWSIAVKDGKAL
Sbjct: 193 FVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKDGKAL 252

Query: 260 EKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEF 312
           ++ WR E+PIPRGGPHRAC V ND+L V+GGQEGDFMAKP SPIFKCSRR E 
Sbjct: 253 DE-WREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREI 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZKD9|KLH20_CHICK Kelch-like protein 20 OS=Gallus gallus GN=KLHL20 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 345 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 402

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 403 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 459

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 460 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 512

Query: 288 VGGQE 292
           VGG++
Sbjct: 513 VGGRD 517

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Gallus gallus (taxid: 9031)

>sp|Q6DFF6|KLH20_XENLA Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 339 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 396

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 397 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 453

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 454 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 506

Query: 288 VGGQE 292
           VGG++
Sbjct: 507 VGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Xenopus laevis (taxid: 8355)

>sp|Q8VCK5|KLH20_MOUSE Kelch-like protein 20 OS=Mus musculus GN=Klhl20 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 339 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 396

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 397 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 453

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 454 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 506

Query: 288 VGGQE 292
           VGG++
Sbjct: 507 VGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Mus musculus (taxid: 10090)

>sp|D3Z8N4|KLH20_RAT Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2M5|KLH20_HUMAN Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Homo sapiens (taxid: 9606)

>sp|Q08DK3|KLH20_BOVIN Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Bos taurus (taxid: 9913)

>sp|Q5R7B8|KLH20_PONAB Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct: 344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV   G ++Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct: 402 CRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct: 459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query: 288 VGGQE 292
           VGG++
Sbjct: 512 VGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Pongo abelii (taxid: 9601)

>sp|B4J045|KLHDB_DROGR Kelch-like protein diablo OS=Drosophila grimshawi GN=dbo PE=3 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           +W+ +      R       + +L Y   G+    Y++S ++ Y+   N+W      P   
Sbjct: 349 DWKMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTS 406

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             + +GV     ++Y V GQ G QC     R    D +  KW  + P+ + R   A  + 
Sbjct: 407 CRTSVGVAVLDGFLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVAVAVL 463

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            G L+ +GGS        +E +          +  W    P+     H  C VFN+ ++ 
Sbjct: 464 SGHLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYA 516

Query: 288 VGGQE 292
           VGG++
Sbjct: 517 VGGRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila grimshawi (taxid: 7222)

>sp|B4L0G9|KLHDB_DROMO Kelch-like protein diablo OS=Drosophila mojavensis GN=dbo PE=3 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 13/171 (7%)

Query: 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181
           G A+ + +L Y   G+    Y++S ++ Y+   N+W      P     + +GV     ++
Sbjct: 364 GVAV-LNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCRTSVGVAVLDGFL 420

Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241
           Y V GQ G QC     R    D +  KW  + P+ + R   A  +  G L+ +GGS    
Sbjct: 421 YAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVAVAVLSGHLYAIGGSDGQC 477

Query: 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE 292
               +E +          +  W    P+     H  C VFN+ ++ VGG++
Sbjct: 478 PLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVGGRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila mojavensis (taxid: 7230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
296090252	431	unnamed protein product [Vitis vinifera]	0.916	0.684	0.709	1e-126
225452169	423	PREDICTED: kelch repeat-containing prote	0.916	0.697	0.709	1e-126
449449581	418	PREDICTED: kelch repeat-containing prote	0.913	0.703	0.673	1e-123
449479719	418	PREDICTED: LOW QUALITY PROTEIN: kelch re	0.913	0.703	0.669	1e-122
225443351	426	PREDICTED: kelch repeat-containing prote	0.913	0.690	0.699	1e-120
255536987	430	conserved hypothetical protein [Ricinus	0.956	0.716	0.691	1e-119
255561818	425	conserved hypothetical protein [Ricinus	0.872	0.661	0.694	1e-116
449512779	383	PREDICTED: kelch repeat-containing prote	0.894	0.751	0.702	1e-115
224097430	424	predicted protein [Populus trichocarpa]	0.903	0.686	0.675	1e-115
449453359	427	PREDICTED: kelch repeat-containing prote	0.894	0.674	0.702	1e-115

>gi|296090252|emb|CBI40071.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 252/306 (82%), Gaps = 11/306 (3%)

Query: 9   KHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPH 68
           KH  +K        +G LGA L+AD++WAS+S       A+LS+ASNWAL KS  VVIP 
Sbjct: 7   KHYTSKKLVLLASFVGFLGAILVADYLWASASF------AYLSIASNWALTKSSTVVIP- 59

Query: 69  VNATKIDRQ-RESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQI 127
              T  D + ++ V V DKK + + R LSATFADLPAP+L+WE+M  APVPRLDGA+IQI
Sbjct: 60  ---TNFDEKLQQRVDVKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQI 116

Query: 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187
           KNL YVFAGYG+L+YVHSHVD+YN TDN W  RFDMPK+MAHSHLG+ +DGRYIYIVSGQ
Sbjct: 117 KNLLYVFAGYGTLNYVHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQ 176

Query: 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLE 247
           YGPQCRGPT+R FVLD+ET+KW  +P LP+PRY+PATQLWRGRLHVMGG KENRHTPGLE
Sbjct: 177 YGPQCRGPTARCFVLDTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLE 236

Query: 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCS 307
           HWS+AVK+GKALEK WR+EIPIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIFKCS
Sbjct: 237 HWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCS 296

Query: 308 RRHEFM 313
           RRHE +
Sbjct: 297 RRHEVV 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452169|ref|XP_002270625.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/306 (70%), Positives = 252/306 (82%), Gaps = 11/306 (3%)

Query: 9   KHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPH 68
           KH  +K        +G LGA L+AD++WAS+S       A+LS+ASNWAL KS  VVIP 
Sbjct: 7   KHYTSKKLVLLASFVGFLGAILVADYLWASASF------AYLSIASNWALTKSSTVVIP- 59

Query: 69  VNATKIDRQ-RESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQI 127
              T  D + ++ V V DKK + + R LSATFADLPAP+L+WE+M  APVPRLDGA+IQI
Sbjct: 60  ---TNFDEKLQQRVDVKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQI 116

Query: 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187
           KNL YVFAGYG+L+YVHSHVD+YN TDN W  RFDMPK+MAHSHLG+ +DGRYIYIVSGQ
Sbjct: 117 KNLLYVFAGYGTLNYVHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQ 176

Query: 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLE 247
           YGPQCRGPT+R FVLD+ET+KW  +P LP+PRY+PATQLWRGRLHVMGG KENRHTPGLE
Sbjct: 177 YGPQCRGPTARCFVLDTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLE 236

Query: 248 HWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCS 307
           HWS+AVK+GKALEK WR+EIPIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIFKCS
Sbjct: 237 HWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCS 296

Query: 308 RRHEFM 313
           RRHE +
Sbjct: 297 RRHEVV 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449581|ref|XP_004142543.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/309 (67%), Positives = 253/309 (81%), Gaps = 15/309 (4%)

Query: 5   DHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVV 64
           +H    + T T  + +   GLLGAALIAD +W SSSS   +S+        WA+ ++ + 
Sbjct: 4   NHLKNASSTNTLLFLITCAGLLGAALIADLLWTSSSSFSIAST--------WAIGRTKLY 55

Query: 65  VIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAA 124
           VIPH +         +   +D K  D+ +FL+ TF DLPAPDLEWE++PSAPVPRLDGA+
Sbjct: 56  VIPHSST-------NNATQVDDKETDSRKFLTGTFFDLPAPDLEWEEIPSAPVPRLDGAS 108

Query: 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184
           IQI N+FYVFAGYG+++YVH+HVD++NF+DNKW+ +FDMPK+MAHSHLG+  DGRY+Y+V
Sbjct: 109 IQINNIFYVFAGYGNINYVHTHVDMFNFSDNKWIGKFDMPKEMAHSHLGMACDGRYVYVV 168

Query: 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP 244
           SGQYGPQCRGPT+RTFVLD+ET+KW+S+PPLP+PRY+PATQLWRGRLHVMGGSKENRHTP
Sbjct: 169 SGQYGPQCRGPTARTFVLDTETKKWNSMPPLPAPRYAPATQLWRGRLHVMGGSKENRHTP 228

Query: 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIF 304
           GLEHWSIAVKDGK LEK WRTE+PIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIF
Sbjct: 229 GLEHWSIAVKDGKVLEKKWRTEVPIPRGGPHRACIVVDDRLFVIGGQEGDFMAKPGSPIF 288

Query: 305 KCSRRHEFM 313
           KCSRRHE +
Sbjct: 289 KCSRRHEVV 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479719|ref|XP_004155687.1| PREDICTED: LOW QUALITY PROTEIN: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/309 (66%), Positives = 252/309 (81%), Gaps = 15/309 (4%)

Query: 5   DHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVV 64
           +H    + T T  + +   GLLGAALIAD +W SSSS   +S+        WA+ ++ + 
Sbjct: 4   NHLKNASSTNTLLFLITCAGLLGAALIADLLWTSSSSFSIAST--------WAIGRTKLY 55

Query: 65  VIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAA 124
           VIPH +         +   +D K  D+ +FL+ TF DLPAPDLEWE++PSAPVPRLDGA+
Sbjct: 56  VIPHSST-------NNATQVDDKETDSRKFLTGTFFDLPAPDLEWEEIPSAPVPRLDGAS 108

Query: 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184
           IQI N+FYVFAGYG+++YVH+HVD++NF+DNKW+ +FDMPK+MAHSHLG+  DGRY+Y+V
Sbjct: 109 IQINNIFYVFAGYGNINYVHTHVDMFNFSDNKWIGKFDMPKEMAHSHLGMACDGRYVYVV 168

Query: 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP 244
           SGQYGPQCRGPT+RTFVLD+ET+KW+S+ PLP+PRY+PATQLWRGRLHVMGGSKENRHTP
Sbjct: 169 SGQYGPQCRGPTARTFVLDTETKKWNSMXPLPAPRYAPATQLWRGRLHVMGGSKENRHTP 228

Query: 245 GLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIF 304
           GLEHWSIAVKDGK LEK WRTE+PIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIF
Sbjct: 229 GLEHWSIAVKDGKVLEKKWRTEVPIPRGGPHRACIVVDDRLFVIGGQEGDFMAKPGSPIF 288

Query: 305 KCSRRHEFM 313
           KCSRRHE +
Sbjct: 289 KCSRRHEVV 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443351|ref|XP_002265018.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera] gi|297735771|emb|CBI18458.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/303 (69%), Positives = 249/303 (82%), Gaps = 9/303 (2%)

Query: 13  TKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKS-GVVVIPHVNA 71
           ++T  + +   GLL A L+AD +WASS SS    S + S+A+NWA + S   V++PH   
Sbjct: 10  SRTFVFVISCFGLLAAGLVADLLWASSKSS----SGYHSIATNWAFDDSRSTVIVPHQQP 65

Query: 72  TKIDRQRESVAVIDKKGQDA-ERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
            K    +E   V DKK  D  ER LSATFADLPAP+LEWE+M  APVPRLDGAAIQIKNL
Sbjct: 66  QK---AKEGSDVKDKKKADVPERVLSATFADLPAPELEWEKMAPAPVPRLDGAAIQIKNL 122

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            YVFAGYG++D+VHSHVDVYNFTDN W  RFDMPK+MAHSHLG+V+DGRYIY+V+GQYGP
Sbjct: 123 LYVFAGYGTIDFVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGP 182

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250
           QCRGPT+RTFVLD++T++W  +PPLP PRY+PATQLWRGRLHVMGGS ENRHTP LEHWS
Sbjct: 183 QCRGPTARTFVLDTKTKQWSDMPPLPVPRYAPATQLWRGRLHVMGGSGENRHTPALEHWS 242

Query: 251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRH 310
           +AVK+GKALEK WR+EIPIPRGGPHRAC V +DRL V+GGQEGDFMAKPGSPIFKCSRR+
Sbjct: 243 LAVKNGKALEKEWRSEIPIPRGGPHRACIVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRN 302

Query: 311 EFM 313
           E +
Sbjct: 303 EVV 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536987|ref|XP_002509560.1| conserved hypothetical protein [Ricinus communis] gi|223549459|gb|EEF50947.1| conserved hypothetical protein [Ricinus communis]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 254/314 (80%), Gaps = 6/314 (1%)

Query: 1   MARFDHHNKHTYTKTGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEK 60
           MAR  H N   ++K   + L  +GLLGA  I D +W +SSSS S SSA+ S+ASNW L  
Sbjct: 1   MARLGHTNH--FSKKSVFLLSCVGLLGALFIVDVLW-TSSSSLSISSAYQSIASNWVLVN 57

Query: 61  SGV-VVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPR 119
            G   V+P+++A+K D ++E++    K    AER LSATFADLPAP+LEWEQMPSAPVPR
Sbjct: 58  PGNNAVLPNISASK-DHEKEALKG-RKDSVGAERLLSATFADLPAPELEWEQMPSAPVPR 115

Query: 120 LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179
           LDG ++QI NL YVF GYG++++VHSHVDVYNFTDN W ++FD PKDMAHSHLGV +DGR
Sbjct: 116 LDGYSVQINNLLYVFVGYGNINHVHSHVDVYNFTDNTWGEKFDTPKDMAHSHLGVATDGR 175

Query: 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE 239
           YIYIVSGQYGPQCR   S TF LD+ET+ W  +P LP+PRY+PATQLWRGRLHVMGGSKE
Sbjct: 176 YIYIVSGQYGPQCRTAISLTFSLDTETKIWRRMPSLPAPRYAPATQLWRGRLHVMGGSKE 235

Query: 240 NRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP 299
           NRHTPG++HWSIAVKDGKALEK WRTEIPIPRGGPHRAC V NDRLFV+GGQEGDFM KP
Sbjct: 236 NRHTPGVDHWSIAVKDGKALEKEWRTEIPIPRGGPHRACIVVNDRLFVIGGQEGDFMPKP 295

Query: 300 GSPIFKCSRRHEFM 313
           GSPIFKCSRR+E +
Sbjct: 296 GSPIFKCSRRNEVV 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561818|ref|XP_002521918.1| conserved hypothetical protein [Ricinus communis] gi|223538843|gb|EEF40442.1| conserved hypothetical protein [Ricinus communis]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/301 (69%), Positives = 240/301 (79%), Gaps = 20/301 (6%)

Query: 20  LCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE 79
           L  + LLG   +A+++WASS         HLS   NW    +    +P+V   K    R+
Sbjct: 15  LVCVALLGFGAVANYLWASSF-------PHLS---NWVNVDN---YVPNVILPKDQNPRQ 61

Query: 80  SVAVIDKKGQDA-------ERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFY 132
             A  +KK +         ERFLSATFADLPAPDL+WE+M SAPVPRLDGAAIQIKNL Y
Sbjct: 62  VGADKEKKPKKDKDKKDIPERFLSATFADLPAPDLKWEKMTSAPVPRLDGAAIQIKNLLY 121

Query: 133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC 192
           VFAGYG++DYVHSHVD+YNFTDN W  RFDMPK+MAHSHLG+V+DGRYIY+VSGQYGPQC
Sbjct: 122 VFAGYGTIDYVHSHVDIYNFTDNTWGKRFDMPKEMAHSHLGMVTDGRYIYVVSGQYGPQC 181

Query: 193 RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA 252
           RGPT+ TFVLD+ET++W  +PPLP PRY+PATQLWRGRLHVMGGSKENRHTPGLEHWS+A
Sbjct: 182 RGPTAHTFVLDTETKQWQDMPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPGLEHWSLA 241

Query: 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEF 312
           VKDGKALEK WRTEIPIPRGGPHRAC V ND+L V+GGQEGDFMAKPGSPIFKCSRR+E 
Sbjct: 242 VKDGKALEKEWRTEIPIPRGGPHRACVVVNDQLIVIGGQEGDFMAKPGSPIFKCSRRNEV 301

Query: 313 M 313
           +
Sbjct: 302 V 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512779|ref|XP_004164137.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 237/296 (80%), Gaps = 8/296 (2%)

Query: 20  LCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE 79
           L  L LLG ALIAD++WASSS    S S    +ASNWA        IP    TK D    
Sbjct: 15  LICLALLGFALIADYIWASSSRFSYSLS----IASNWAPPYHPDTSIP--VTTKPDSANP 68

Query: 80  SVAVIDKKGQDAE--RFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGY 137
           +     K G+D    R LSATFADLPAP+L W++M +APVPRLDGAAIQIKNL +VFAGY
Sbjct: 69  TKGEAAKGGKDVNPGRALSATFADLPAPELTWKKMTTAPVPRLDGAAIQIKNLLFVFAGY 128

Query: 138 GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTS 197
           G++D VHSHVDVYNFTDN W  RFDMPK+MAHSHLG+ +DGRYIY+V+GQYGPQCRGPT+
Sbjct: 129 GTIDSVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMATDGRYIYVVTGQYGPQCRGPTA 188

Query: 198 RTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257
            TFVLD+ETR+W  +PPLP PRY+PATQLWRGRLHVMGGS ENRHTP LEHWS+AVKDGK
Sbjct: 189 HTFVLDTETRQWQDMPPLPVPRYAPATQLWRGRLHVMGGSMENRHTPALEHWSLAVKDGK 248

Query: 258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFM 313
           ALEK WR+EIPIPRGGPHRAC V +DRL+V+GGQEGDFMAKPGSPIFKCSRR+E +
Sbjct: 249 ALEKEWRSEIPIPRGGPHRACIVVDDRLYVIGGQEGDFMAKPGSPIFKCSRRNEVV 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097430|ref|XP_002310931.1| predicted protein [Populus trichocarpa] gi|222850751|gb|EEE88298.1| predicted protein [Populus trichocarpa]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/299 (67%), Positives = 235/299 (78%), Gaps = 8/299 (2%)

Query: 15  TGCWFLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKI 74
           T    +CV+ LLG  LI D++WASS    SSS     V   +       V+IP       
Sbjct: 11  TKLVIVCVV-LLGFGLIGDYLWASSPHFASSSYISNRVPPKYPQSN---VIIPKQEPHLA 66

Query: 75  DRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVF 134
           D + + + V        +R LSATFADLPAP+L+WE+M +APVPRLDGAAIQIK+L YVF
Sbjct: 67  DTKPQKIKVDGVH----DRSLSATFADLPAPELKWEKMANAPVPRLDGAAIQIKDLLYVF 122

Query: 135 AGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRG 194
           AGYG++D+VHSHVD+YNFT N W  RFDMPK+MAHSHLG+V+DGRYIY+V+GQYGPQCRG
Sbjct: 123 AGYGTIDFVHSHVDIYNFTGNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRG 182

Query: 195 PTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254
           PT+R FVLD+ETRKW  +PPLP PRY+PATQLWRGRLHVMGGSKENRHTP LEHWS+AVK
Sbjct: 183 PTARNFVLDTETRKWQDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVK 242

Query: 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFM 313
           DGKALEK WRTEIPIP GGPHRAC V NDRL ++GGQEGDFMAKPGSPIFKCSRR+E +
Sbjct: 243 DGKALEKEWRTEIPIPHGGPHRACVVVNDRLLIIGGQEGDFMAKPGSPIFKCSRRNEIV 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453359|ref|XP_004144425.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 237/296 (80%), Gaps = 8/296 (2%)

Query: 20  LCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE 79
           L  L LLG ALIAD++WASSS    S S    +ASNWA        IP    TK D    
Sbjct: 15  LICLALLGFALIADYIWASSSRFSYSLS----IASNWAPPYHPDTSIP--VTTKPDSANP 68

Query: 80  SVAVIDKKGQDAE--RFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGY 137
           +     K G+D    R LSATFADLPAP+L W++M +APVPRLDGAAIQIKNL +VFAGY
Sbjct: 69  TKGEAAKGGKDVNPGRALSATFADLPAPELTWKKMTTAPVPRLDGAAIQIKNLLFVFAGY 128

Query: 138 GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTS 197
           G++D VHSHVDVYNFTDN W  RFDMPK+MAHSHLG+ +DGRYIY+V+GQYGPQCRGPT+
Sbjct: 129 GTIDSVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMATDGRYIYVVTGQYGPQCRGPTA 188

Query: 198 RTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257
            TFVLD+ETR+W  +PPLP PRY+PATQLWRGRLHVMGGS ENRHTP LEHWS+AVKDGK
Sbjct: 189 HTFVLDTETRQWQDMPPLPVPRYAPATQLWRGRLHVMGGSMENRHTPALEHWSLAVKDGK 248

Query: 258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEFM 313
           ALEK WR+EIPIPRGGPHRAC V +DRL+V+GGQEGDFMAKPGSPIFKCSRR+E +
Sbjct: 249 ALEKEWRSEIPIPRGGPHRACIVVDDRLYVIGGQEGDFMAKPGSPIFKCSRRNEVV 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2033944	415	AT1G51540 [Arabidopsis thalian	0.857	0.665	0.656	1.8e-101
TAIR|locus:2086528	426	AT3G27220 "AT3G27220" [Arabido	0.919	0.694	0.601	5.8e-98
UNIPROTKB|B4L0G9	617	dbo "Kelch-like protein diablo	0.524	0.273	0.275	1e-09
UNIPROTKB|B4J045	624	dbo "Kelch-like protein diablo	0.524	0.270	0.275	1e-09
UNIPROTKB|B4LIG6	624	dbo "Kelch-like protein diablo	0.524	0.270	0.275	1e-09
UNIPROTKB|Q6DFF6	604	klhl20 "Kelch-like protein 20"	0.537	0.286	0.254	1.7e-09
UNIPROTKB|F1NMM8	609	KLHL20 "Kelch-like protein 20"	0.537	0.284	0.254	1.7e-09
UNIPROTKB|Q5ZKD9	610	KLHL20 "Kelch-like protein 20"	0.537	0.283	0.254	1.7e-09
UNIPROTKB|F1NGH0	617	KLHL20 "Kelch-like protein 20"	0.537	0.280	0.254	1.7e-09
UNIPROTKB|B0WWP2	582	dbo "Kelch-like protein diablo	0.524	0.290	0.275	2.1e-09

TAIR|locus:2033944 AT1G51540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 191/291 (65%), Positives = 221/291 (75%)

Query:    21 CVLGLLGAALIADFMWXXXXXXXXXXXXXXXXXXNWALEKSGVVVIPHVNATKIDRQRES 80
             C+  LL   LIADF+W                    +L  S   VI  V   + D ++  
Sbjct:    15 CI-ALLATGLIADFLWATSHRFSSAAISAGL-----SLPSSLTTVI--VPGQEKDTKK-- 64

Query:    81 VAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSL 140
                  KK    ER LS TF DLPAP+L+WE+M ++PVPRLDGAAIQI++L YVFAGYG++
Sbjct:    65 -----KKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTI 119

Query:   141 DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF 200
             D VHSHVD+YNFTDN W  RF+MPKDMAHSHLG+V+DGRYIYIV+GQ+GPQCRGPT++TF
Sbjct:   120 DLVHSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTF 179

Query:   201 VLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260
             VLD++T  W    PLP PRY+PATQLWRGRLHVMGGSKENR TPGLEHWSIAVKDGK+LE
Sbjct:   180 VLDTDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLE 239

Query:   261 KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHE 311
               WR+EIPIPRGGPHRAC V +DRLFV+GGQEGDFMAKPGSPIFKCSRR E
Sbjct:   240 NEWRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRME 290

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2086528 AT3G27220 "AT3G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 184/306 (60%), Positives = 221/306 (72%)

Query:     6 HHNKHTYTKTGCWFLCVLGLLGAALIADFMWXXXXXXXXXXXXXXXXXXNWALEKSGVVV 65
             HH+ H  ++     L    +LG   IA F+                    W       + 
Sbjct:     8 HHHHHQSSRRLMLVLYFTSVLGIGFIAAFLCLSSSIPSVSAVFSI-----WVPVNRPEIQ 62

Query:    66 IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAI 125
             IP +++  +  Q+ S    D K  D  RFLSA FAD+PAP+L+WE+M SAPVPRLDG ++
Sbjct:    63 IPIIDSKIV--QKRSKQSNDTK--DHVRFLSAIFADIPAPELKWEEMESAPVPRLDGYSV 118

Query:   126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185
             QI NL YVF+GYGSLDYVHSHVDV+NFTDNKW DRF  PK+MA+SHLG+V+DGRY+Y+VS
Sbjct:   119 QINNLLYVFSGYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVS 178

Query:   186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG 245
             GQ GPQCRGPTSR+FVLDS T+ W   P LP+PRY+PATQ+WRGRLHVMGGSKENR+   
Sbjct:   179 GQLGPQCRGPTSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVA 238

Query:   246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFK 305
              +HWSIAVKDGKAL++ WR E+PIPRGGPHRAC V ND+L V+GGQEGDFMAKP SPIFK
Sbjct:   239 FDHWSIAVKDGKALDE-WREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFK 297

Query:   306 CSRRHE 311
             CSRR E
Sbjct:   298 CSRRRE 303

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|B4L0G9 dbo "Kelch-like protein diablo" [Drosophila mojavensis (taxid:7230)]

 Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   349 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 403

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   404 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 459

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   460 VAVLSGHLYAIGGSDGQCPLNTVERY-----DPR--QNKWVAVNPMSTRRKHLGCAVFNN 512

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   513 YIYAVGGRD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|B4J045 dbo "Kelch-like protein diablo" [Drosophila grimshawi (taxid:7222)]

 Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   349 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 403

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   404 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 459

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   460 VAVLSGHLYAIGGSDGQCPLNTVERY-----DPR--QNKWVAVNPMSTRRKHLGCAVFNN 512

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   513 YIYAVGGRD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|B4LIG6 dbo "Kelch-like protein diablo" [Drosophila virilis (taxid:7244)]

 Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   349 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 403

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   404 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 459

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   460 VAVLSGHLYAIGGSDGQCPLNTVERY-----DPR--QNKWVAVNPMSTRRKHLGCAVFNN 512

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   513 YIYAVGGRD 521

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|Q6DFF6 klhl20 "Kelch-like protein 20" [Xenopus laevis (taxid:8355)]

 Score = 166 (63.5 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   339 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 396

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   397 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 453

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   454 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 506

Query:   288 VGGQE 292
             VGG++
Sbjct:   507 VGGRD 511

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0044444 "cytoplasmic part" evidence=ISS

UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   344 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 401

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   402 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 458

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   459 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 511

Query:   288 VGGQE 292
             VGG++
Sbjct:   512 VGGRD 516

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5ZKD9 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   345 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 402

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   403 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 459

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   460 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 512

Query:   288 VGGQE 292
             VGG++
Sbjct:   513 VGGRD 517

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044444 "cytoplasmic part" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F1NGH0 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 47/185 (25%), Positives = 75/185 (40%)

Query:   108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
             EW  + S    R       + +L Y   G+    Y++S V+ Y+   N+W      P   
Sbjct:   352 EWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTST 409

Query:   168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               + +GV   G Y+Y V GQ G  C     R    D +  KW  +  + + R   A  + 
Sbjct:   410 CRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAVL 466

Query:   228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              G L+ +GGS        +E ++         E  W T  P+     H  C V+ D ++ 
Sbjct:   467 GGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIYA 519

Query:   288 VGGQE 292
             VGG++
Sbjct:   520 VGGRD 524

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|B0WWP2 dbo "Kelch-like protein diablo" [Culex quinquefasciatus (taxid:7176)]

 Score = 165 (63.1 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 52/189 (27%), Positives = 87/189 (46%)

Query:   108 EWEQMPSAPVP-RLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-P 164
             +W+ +  AP+  R  G  + + N L Y   G+    Y++S ++ Y+   N+W    D+ P
Sbjct:   317 DWKMV--APMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQW--SCDVAP 371

Query:   165 KDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
                  + +GV V DG ++Y V GQ G QC     R    D +  KW  + P+ + R   A
Sbjct:   372 TTSCRTSVGVAVLDG-FLYAVGGQDGVQCLNHVER---YDPKENKWSKVAPMTTRRLGVA 427

Query:   224 TQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
               +  G L+ +GGS        +E +     D +  +  W    P+     H  C VFN+
Sbjct:   428 VAVLGGYLYAIGGSDGQCPLNTVERY-----DPR--QNKWCAVSPMSTRRKHLGCAVFNN 480

Query:   284 RLFVVGGQE 292
              ++ VGG++
Sbjct:   481 FIYAVGGRD 489

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0016049 "cell growth" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020557001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (423 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-08
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	3e-08
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	4e-08
pfam13964	50	pfam13964, Kelch_6, Kelch motif	3e-06
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-05
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	2e-05
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	1e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	6e-04
PHA02790	480	PHA02790, PHA02790, Kelch-like protein; Provisiona	0.003
smart00612	47	smart00612, Kelch, Kelch domain	0.004

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164
           PR    +  I     Y+F G      V S V V++ + N W     +P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLP 48

Length = 49

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 13/169 (7%)

Query: 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY 182
            ++ + N+ Y   G    +   + V  Y+     W    ++       + GV      IY
Sbjct: 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL--IYPRKNPGVTVFNNRIY 346

Query: 183 IVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-R 241
           ++ G Y        +          KW   PPL  PRY+P        ++V+GG  +N  
Sbjct: 347 VIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDE 403

Query: 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290
               +E +S+           W    P+P           + +++V+GG
Sbjct: 404 LLKTVECFSL-------NTNKWSKGSPLPISHYGGCAIYHDGKIYVIGG 445

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 2/147 (1%)

Query: 109 WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168
           W + P    PR +   + + NL YV  G    D +   V+ ++   NKW     +P  ++
Sbjct: 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS 427

Query: 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWR 228
           H     +     IY++ G          +     +  T KW  +  L  PR + +  ++ 
Sbjct: 428 HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFN 487

Query: 229 GRLHVMGGSKENRHTPGLEHWSIAVKD 255
            +++V+GG K   +   +E +      
Sbjct: 488 NKIYVVGGDKYEYYINEIEVYDDKTNT 514

Length = 534

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219
             +    VS G  IY+  G         +++  V D ET  W+ +PPLP+PR
Sbjct: 1   PRTGHSAVSVGGKIYVFGGYSNGSK--ASNKVLVYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 13/185 (7%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W ++P    PR +       N  YV  G  +   + + V+ +   ++KW  R + P   
Sbjct: 322 SWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISL-NTVESWKPGESKW--REEPPLIF 378

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
              +  VV+    IY++ G         T         T KW    PLP   Y       
Sbjct: 379 PRYNPCVVNVNNLIYVIGGISKNDELLKTVE--CFSLNTNKWSKGSPLPISHYGGCAIYH 436

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRACFVFNDRL 285
            G+++V+GG     +   ++ ++I V+    +   W     +  PR      C +FN+++
Sbjct: 437 DGKIYVIGGIS---YIDNIKVYNI-VESYNPVTNKWTELSSLNFPRINAS-LC-IFNNKI 490

Query: 286 FVVGG 290
           +VVGG
Sbjct: 491 YVVGG 495

Length = 534

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221
           G  IY+  G      R   +  +V D +T  W+ +  LP PR  
Sbjct: 1   GGKIYVFGGLGDGGTR--LNDLWVYDLDTNTWEKLGDLPGPRAG 42

Length = 48

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF---- 161
           +L+W +    P     GA+I  +N  Y   G  S +   S   VY  T ++  +      
Sbjct: 50  NLKWVKAGQLPYAAAYGASISTENGIYYIGGSNSSE---SFSSVYRITLDESKEALIIET 106

Query: 162 --DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SP 218
              +P  M  +      DG+         G     P+++ +  + ET++W+ +P  P +P
Sbjct: 107 LPSLPFAM-DNGSATYKDGKLYVGGGNANGK----PSNKFYCFNLETQEWEELPDFPGAP 161

Query: 219 RYSPATQLWRGRLHVMGGSKENRHTPGL 246
           R  P     +  L+V GG     +T G 
Sbjct: 162 RVQPVCVKLQNELYVFGGGDNIAYTDGY 189

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216
           S  GVV  G  IY++ G  G Q     S   V D ET  W  +P +P
Sbjct: 3   SGAGVVVLGGKIYVIGGYDGGQ---SLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 30/172 (17%)

Query: 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYI 183
           +  +  + Y+  G+ + + +H++    N+  N W+    M     ++  GV ++ + +Y+
Sbjct: 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GVPANNK-LYV 323

Query: 184 VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243
           V G   P       R F  D+    W ++P L  PR +PA       ++V+GG  E   T
Sbjct: 324 VGGLPNPT---SVERWFHGDAA---WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTT 377

Query: 244 -----PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC-FVFNDRLFVVG 289
                P  + W                  P      +++C  VF  RLF+VG
Sbjct: 378 TEYLLPNHDQWQFG---------------PSTYYPHYKSCALVFGRRLFLVG 414

Length = 480

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA 223
           IY+V G  G Q         V D ET KW  +P +P+PR    
Sbjct: 2   IYVVGGFDGGQR---LKSVEVYDPETNKWTPLPSMPTPRSGHG 41

Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	99.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.97
PLN02153	341	epithiospecifier protein	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
PLN02153	341	epithiospecifier protein	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.96
PLN02193	470	nitrile-specifier protein	99.96
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.96
PLN02193	470	nitrile-specifier protein	99.96
PHA03098	534	kelch-like protein; Provisional	99.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.95
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.95
PHA02790	480	Kelch-like protein; Provisional	99.95
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.94
KOG1230	521	consensus Protein containing repeated kelch motifs	99.93
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.92
KOG1230	521	consensus Protein containing repeated kelch motifs	99.9
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.9
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.86
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.84
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.69
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.62
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.51
PF13964	50	Kelch_6: Kelch motif	99.32
PF13964	50	Kelch_6: Kelch motif	99.27
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.1
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.09
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.99
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.97
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.97
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.96
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.96
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.95
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.92
smart00612	47	Kelch Kelch domain.	98.85
smart00612	47	Kelch Kelch domain.	98.73
PLN02772	398	guanylate kinase	98.66
PF13854	42	Kelch_5: Kelch motif	98.56
PLN02772	398	guanylate kinase	98.48
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.43
PF13854	42	Kelch_5: Kelch motif	98.4
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.75
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.73
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.63
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.4
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.98
PF03089	337	RAG2: Recombination activating protein 2; InterPro	96.98
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.95
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.35
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.63
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.98
PRK04922	433	tolB translocation protein TolB; Provisional	94.24
PRK00178	430	tolB translocation protein TolB; Provisional	93.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.8
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.6
PRK04792	448	tolB translocation protein TolB; Provisional	92.84
smart00284	255	OLF Olfactomedin-like domains.	92.79
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.69
PRK03629	429	tolB translocation protein TolB; Provisional	92.53
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.28
KOG2055	514	consensus WD40 repeat protein [General function pr	92.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.92
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.84
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	91.66
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	90.12
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	89.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.25
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	89.19
PRK04792	448	tolB translocation protein TolB; Provisional	88.99
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	88.43
PRK01742	429	tolB translocation protein TolB; Provisional	88.22
PRK02889	427	tolB translocation protein TolB; Provisional	88.18
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	86.06
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	85.94
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	85.44
PRK05137	435	tolB translocation protein TolB; Provisional	85.43
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.68
PRK05137	435	tolB translocation protein TolB; Provisional	84.67
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	83.99
KOG0649	325	consensus WD40 repeat protein [General function pr	82.92
PRK00178	430	tolB translocation protein TolB; Provisional	81.7
PRK04922	433	tolB translocation protein TolB; Provisional	81.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	80.98
KOG2055	514	consensus WD40 repeat protein [General function pr	80.09

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=290.40  Aligned_cols=203  Identities=20%  Similarity=0.357  Sum_probs=182.6

Q ss_pred             hhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           94 FLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        94 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      ...++++.||+..++|+.+++|+.+|..+++++++++||++||.++...+ +++++|||.+++|+.+++|+.  +|++++
T Consensus       346 ~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l-~svE~YDp~~~~W~~va~m~~--~r~~~g  422 (571)
T KOG4441|consen  346 DRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSL-NSVECYDPVTNKWTPVAPMLT--RRSGHG  422 (571)
T ss_pred             cccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccc-ccEEEecCCCCcccccCCCCc--ceeeeE
Confidence            34458999999999999999999999999999999999999999976654 569999999999999999998  899999


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeee
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV  253 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v  253 (322)
                      +++.+++||++||.++...  .++++++|||.+++|+.+++|+.+|.++++++++++||++||+++.....++++||   
T Consensus       423 v~~~~g~iYi~GG~~~~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd---  497 (571)
T KOG4441|consen  423 VAVLGGKLYIIGGGDGSSN--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD---  497 (571)
T ss_pred             EEEECCEEEEEcCcCCCcc--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc---
Confidence            9999999999999988772  27999999999999999999999999999999999999999998855555566665   


Q ss_pred             eccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCC------CCCCCCCeeeeeE
Q 020682          254 KDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF------MAKPGSPIFKCSR  308 (322)
Q Consensus       254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~------~~~p~~~~~~~~~  308 (322)
                          |++++|+.+++|+..+.+.++++++++||++||+++..      .|+|.+..|+...
T Consensus       498 ----p~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~  554 (571)
T KOG4441|consen  498 ----PETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT  554 (571)
T ss_pred             ----CCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence                77999999999999999999999999999999998874      5788887775543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=289.34  Aligned_cols=203  Identities=22%  Similarity=0.367  Sum_probs=184.7

Q ss_pred             hhhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCcee
Q 020682           93 RFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (322)
Q Consensus        93 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~  172 (322)
                      ......+..||+.+++|..+++||.+|..+++++++++||++||.+......+++|+||+.+++|..+++|+.  +|..+
T Consensus       297 ~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~  374 (571)
T KOG4441|consen  297 GQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDF  374 (571)
T ss_pred             CcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccc
Confidence            3455589999999999999999999999999999999999999998533455789999999999999999999  89999


Q ss_pred             EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCC-CCCCcceEee
Q 020682          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSI  251 (322)
Q Consensus       173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~-~~~~~~~~~~  251 (322)
                      ++++++++||++||.++...   ++++++|||.+++|+.+++|+.+|+++++++++++||++||.++.. .++++++|| 
T Consensus       375 ~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD-  450 (571)
T KOG4441|consen  375 GVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD-  450 (571)
T ss_pred             eeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc-
Confidence            99999999999999998776   6899999999999999999999999999999999999999998776 777777777 


Q ss_pred             eeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC------CCCCCCCCCeeeee
Q 020682          252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG------DFMAKPGSPIFKCS  307 (322)
Q Consensus       252 ~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~------~~~~~p~~~~~~~~  307 (322)
                            |.+++|+.+++|+..|.++++++++++||++||+++      ...|+|....|.-.
T Consensus       451 ------P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  451 ------PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             ------CCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence                  789999999999999999999999999999999998      34688888776544

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=286.55  Aligned_cols=203  Identities=14%  Similarity=0.221  Sum_probs=175.0

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++++.||+.+++|..+++||.+|..+++++++++||++||.++.. ..+++++|||.+++|+.+++||.  +|.+++++
T Consensus       319 ~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~--~r~~~~~~  395 (557)
T PHA02713        319 LNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI--ALSSYGMC  395 (557)
T ss_pred             cceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc--ccccccEE
Confidence            3478999999999999999999999999999999999999986544 34679999999999999999998  78999999


Q ss_pred             EeCCEEEEEecccCCCC---------------CCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCC
Q 020682          176 SDGRYIYIVSGQYGPQC---------------RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN  240 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~---------------~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~  240 (322)
                      +++++|||+||.++...               ...++++++|||++++|+.+++|+.+|..+++++++|+|||+||.++.
T Consensus       396 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~  475 (557)
T PHA02713        396 VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDE  475 (557)
T ss_pred             EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCC
Confidence            99999999999864311               012578999999999999999999999999999999999999998643


Q ss_pred             CC-CCCcceEeeeeecccccc-CceEeccCCCCCcCceeEEEECCEEEEEecCCC---CCCCCCCCCeeeeeE
Q 020682          241 RH-TPGLEHWSIAVKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG---DFMAKPGSPIFKCSR  308 (322)
Q Consensus       241 ~~-~~~~~~~~~~v~~~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~---~~~~~p~~~~~~~~~  308 (322)
                      .. .+.       ++.|||++ ++|+.+++||..+..+++++++|+||++||+++   ...|||....|+...
T Consensus       476 ~~~~~~-------ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        476 KNVKTC-------IFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             Ccccee-------EEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence            21 122       34455889 899999999999999999999999999999988   678999998776543

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=277.86  Aligned_cols=203  Identities=17%  Similarity=0.203  Sum_probs=171.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.||+.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++|+.  +|..+++++.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEEE
Confidence            57889999999999999999999999999999999999986444445789999999999999999998  8999999999


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCC-CCc----------
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT-PGL----------  246 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~-~~~----------  246 (322)
                      +++||++||.++...   ++++++|||.+++|+.+++||.+|..+++++++|+||++||.++.... +..          
T Consensus       351 ~g~IYviGG~~~~~~---~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNV---ERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCC---CceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence            999999999876543   588999999999999999999999999999999999999998642100 000          


Q ss_pred             ceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC-------CCCCCCCC-Ceee
Q 020682          247 EHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG-------DFMAKPGS-PIFK  305 (322)
Q Consensus       247 ~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~-------~~~~~p~~-~~~~  305 (322)
                      ......++.|||++++|+.+++|+.++..+++++++|+|||+||.++       ...|+|.. ..|+
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence            00012355566889999999999999988899999999999999763       13688887 4554

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=261.28  Aligned_cols=172  Identities=19%  Similarity=0.347  Sum_probs=154.8

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++++.||+.+++|..+++||.+|..++++.++++||++||.+..    +++++||+.+++|..+++||.  +|.+++++
T Consensus       286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~--~r~~~~~~  359 (480)
T PHA02790        286 HNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLK--PRCNPAVA  359 (480)
T ss_pred             CCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCC--CCcccEEE
Confidence            347889999999999999999999999999999999999997532    469999999999999999998  78899999


Q ss_pred             EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeec
Q 020682          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD  255 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~  255 (322)
                      +.+++|||+||.++.     .+.+++|||.+++|+.+++||.+|..+++++++|+||++||.        .++|+     
T Consensus       360 ~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~yd-----  421 (480)
T PHA02790        360 SINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYC-----  421 (480)
T ss_pred             EECCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEec-----
Confidence            999999999997542     367999999999999999999999999999999999999983        34444     


Q ss_pred             cccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC
Q 020682          256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG  293 (322)
Q Consensus       256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~  293 (322)
                        |++++|+.+++||.++.++++++++|+||++||.++
T Consensus       422 --p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~  457 (480)
T PHA02790        422 --ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR  457 (480)
T ss_pred             --CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCC
Confidence              679999999999999988999999999999999864

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=9e-31  Score=258.78  Aligned_cols=204  Identities=17%  Similarity=0.301  Sum_probs=171.2

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++++.||+.+++|..+++||.||.+++++.++++||++||.+... ..+++++||+.+++|+.++++|.  +|.+++++
T Consensus       310 ~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~--~r~~~~~~  386 (534)
T PHA03098        310 VNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIF--PRYNPCVV  386 (534)
T ss_pred             eccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCc--CCccceEE
Confidence            3478999999999999999999999999999999999999987433 45679999999999999999988  78999999


Q ss_pred             EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeec
Q 020682          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD  255 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~  255 (322)
                      +.+++|||+||......  .++++++||+.+++|+.++++|.+|.+++++..+++||++||.+.....   ..++ .++.
T Consensus       387 ~~~~~iYv~GG~~~~~~--~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~-~v~~  460 (534)
T PHA03098        387 NVNNLIYVIGGISKNDE--LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI---KVYN-IVES  460 (534)
T ss_pred             EECCEEEEECCcCCCCc--ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC---cccc-eEEE
Confidence            99999999999754332  2689999999999999999999999999999999999999998643211   1121 2556


Q ss_pred             cccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeeeeE
Q 020682          256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKCSR  308 (322)
Q Consensus       256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~~~  308 (322)
                      |||++++|+.++++|.++.++++++++++|||+||.++.      ..|||....|....
T Consensus       461 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        461 YNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             ecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence            668899999999998888888899999999999997743      35677766665443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.97  E-value=2.8e-30  Score=239.83  Aligned_cols=199  Identities=13%  Similarity=0.224  Sum_probs=156.5

Q ss_pred             hhhccccccCCCCE----EECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCce
Q 020682           96 SATFADLPAPDLEW----EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH  171 (322)
Q Consensus        96 ~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~  171 (322)
                      ..+++.||+.+++|    +.+++||.+|..+++++++++|||+||..... ..+++++||+.+++|++++++|.+ +|..
T Consensus        87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~-~r~~  164 (323)
T TIGR03548        87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE-PRVQ  164 (323)
T ss_pred             ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC-CCCc
Confidence            34789999988887    78899999999999999999999999975333 357899999999999999988754 6888


Q ss_pred             eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC-----CCCCCcE-EEEECCEEEEEeccCCCCCCCC
Q 020682          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-----SPRYSPA-TQLWRGRLHVMGGSKENRHTPG  245 (322)
Q Consensus       172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p-----~~r~~~~-~~~~~~~Lyv~GG~~~~~~~~~  245 (322)
                      +++++.+++|||+||.++..    ..++++||+++++|+.+++|+     ..+..++ +++.+++|||+||.++....+.
T Consensus       165 ~~~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  240 (323)
T TIGR03548       165 PVCVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA  240 (323)
T ss_pred             ceEEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence            99999999999999986543    367899999999999998753     2333444 3455789999999864321111


Q ss_pred             c-------------------------ceEeeeeeccccccCceEeccCCC-CCcCceeEEEECCEEEEEecCCCCCCCCC
Q 020682          246 L-------------------------EHWSIAVKDGKALEKAWRTEIPIP-RGGPHRACFVFNDRLFVVGGQEGDFMAKP  299 (322)
Q Consensus       246 ~-------------------------~~~~~~v~~~~~~~~~W~~~~~~p-~~~~~~~~~~~~~~lyv~GG~~~~~~~~p  299 (322)
                      +                         ..|.-+++.|||.+++|+.++++| ..+.++++++++++||++||.....+..|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~  320 (323)
T TIGR03548       241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPGVRTP  320 (323)
T ss_pred             HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCCcCCc
Confidence            1                         112234666678899999999887 47777889999999999999877666555


Q ss_pred             C
Q 020682          300 G  300 (322)
Q Consensus       300 ~  300 (322)
                      .
T Consensus       321 ~  321 (323)
T TIGR03548       321 D  321 (323)
T ss_pred             C
Confidence            3

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.97  E-value=1.3e-29  Score=237.02  Aligned_cols=212  Identities=16%  Similarity=0.226  Sum_probs=161.2

Q ss_pred             hhhhccccccCCCCEEECCCCC-CCCc---ccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC---CC
Q 020682           95 LSATFADLPAPDLEWEQMPSAP-VPRL---DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DM  167 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p-~~r~---~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---p~  167 (322)
                      ..++++.||+.+++|+.+++++ .||.   ++++++++++||||||.+... ..+++++||+++++|+.+++++.   |.
T Consensus        48 ~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~  126 (341)
T PLN02153         48 IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPE  126 (341)
T ss_pred             eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCC
Confidence            4458999999999999998764 4543   688899999999999986554 34689999999999999887722   44


Q ss_pred             CCceeEEEEeCCEEEEEecccCCCC---CCCCceEEEEeCCCCcEEEcCCCC---CCCCCcEEEEECCEEEEEeccCCCC
Q 020682          168 AHSHLGVVSDGRYIYIVSGQYGPQC---RGPTSRTFVLDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKENR  241 (322)
Q Consensus       168 ~r~~~~~~~~~~~Iyv~GG~~~~~~---~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~~~~Lyv~GG~~~~~  241 (322)
                      +|..|++++.+++|||+||......   ...++++++||+++++|+++++++   .+|.+|++++++++|||+||.....
T Consensus       127 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~  206 (341)
T PLN02153        127 ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSI  206 (341)
T ss_pred             CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccc
Confidence            8999999999999999999864321   112578999999999999998654   7899999999999999999975321


Q ss_pred             CCCCcc-eEeeeeeccccccCceEeccC---CCCCcCceeEEEECCEEEEEecCC---------------CCCCCCCCCC
Q 020682          242 HTPGLE-HWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQE---------------GDFMAKPGSP  302 (322)
Q Consensus       242 ~~~~~~-~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~---------------~~~~~~p~~~  302 (322)
                      ...... ....+++.||+++++|+++.+   +|..+..+++++++++||||||..               ....|+|...
T Consensus       207 ~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        207 LPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             ccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            000000 001124445577999999864   677788889999999999999963               1235677776


Q ss_pred             eeeee
Q 020682          303 IFKCS  307 (322)
Q Consensus       303 ~~~~~  307 (322)
                      .|+..
T Consensus       287 ~W~~~  291 (341)
T PLN02153        287 VWEKL  291 (341)
T ss_pred             EEEec
Confidence            66544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=9.6e-30  Score=238.36  Aligned_cols=190  Identities=19%  Similarity=0.236  Sum_probs=147.8

Q ss_pred             hcccccc--CCCCEEECCCCC-CCCcccEEEEECCEEEEEeecCCCC-----CCcceeEEEECCCCceEECCCCCCCCCC
Q 020682           98 TFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAH  169 (322)
Q Consensus        98 ~~~~yd~--~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~~~~p~~r  169 (322)
                      .++.||.  .+++|..+++|| .+|..+++++++++|||+||.....     ..++++|+||+.+++|++++. +.|.+|
T Consensus        30 ~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~  108 (346)
T TIGR03547        30 SWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGL  108 (346)
T ss_pred             eeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcc
Confidence            5677774  678999999999 5899999999999999999985422     245689999999999999874 233367


Q ss_pred             ceeEEE-EeCCEEEEEecccCCCC-------------------------------CCCCceEEEEeCCCCcEEEcCCCCC
Q 020682          170 SHLGVV-SDGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS  217 (322)
Q Consensus       170 ~~~~~~-~~~~~Iyv~GG~~~~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~p~  217 (322)
                      .+++++ +.+++||++||.+....                               ...++++++||+.+++|+.+++||.
T Consensus       109 ~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~  188 (346)
T TIGR03547       109 LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF  188 (346)
T ss_pred             cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCC
Confidence            777766 78999999999753210                               0013789999999999999999996


Q ss_pred             -CCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCc-------CceeEEEECCEEEEEe
Q 020682          218 -PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG-------PHRACFVFNDRLFVVG  289 (322)
Q Consensus       218 -~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~-------~~~~~~~~~~~lyv~G  289 (322)
                       +|..++++.++++|||+||..... ....+.|   +|++++++++|+.+++||..+       .++++++++++|||+|
T Consensus       189 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~---~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~G  264 (346)
T TIGR03547       189 LGTAGSAIVHKGNKLLLINGEIKPG-LRTAEVK---QYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAG  264 (346)
T ss_pred             CcCCCceEEEECCEEEEEeeeeCCC-ccchheE---EEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEee
Confidence             689999999999999999985432 1222222   345567889999999987543       3445788999999999


Q ss_pred             cCC
Q 020682          290 GQE  292 (322)
Q Consensus       290 G~~  292 (322)
                      |.+
T Consensus       265 G~~  267 (346)
T TIGR03547       265 GAN  267 (346)
T ss_pred             cCC
Confidence            975

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=99.97  E-value=2.9e-29  Score=234.65  Aligned_cols=185  Identities=16%  Similarity=0.246  Sum_probs=146.7

Q ss_pred             cCCCCEEECCC----CCCCCcccEEEEECCEEEEEeecCCC-CCCcceeEEEECCCCceEECCCCCC-CC-CCceeEEEE
Q 020682          104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK-DM-AHSHLGVVS  176 (322)
Q Consensus       104 ~~~~~W~~~~~----~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~-p~-~r~~~~~~~  176 (322)
                      +.+.+|..+.+    +|.||..|+++.++++|||+||.... ....+++++||+.+++|+.++++.. |. .+.++++++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~   83 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA   83 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence            35678999976    79999999999999999999998543 3345789999999999999887643 32 234788899


Q ss_pred             eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC-----CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       177 ~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ++++|||+||.+....   ++++++||+++++|+++++|     |.+|..|++++.+++|||+||............+ .
T Consensus        84 ~~~~iyv~GG~~~~~~---~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~  159 (341)
T PLN02153         84 VGTKLYIFGGRDEKRE---FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R  159 (341)
T ss_pred             ECCEEEEECCCCCCCc---cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence            9999999999876543   68999999999999999877     7899999999999999999998643222111111 1


Q ss_pred             eeeccccccCceEeccCC---CCCcCceeEEEECCEEEEEecCC
Q 020682          252 AVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQE  292 (322)
Q Consensus       252 ~v~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~lyv~GG~~  292 (322)
                      +++.|||++++|+.++++   |..+.++++++++++|||+||.+
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  203 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFA  203 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccc
Confidence            244455779999998765   36677778899999999999864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.96  E-value=8.5e-29  Score=231.96  Aligned_cols=194  Identities=19%  Similarity=0.358  Sum_probs=148.1

Q ss_pred             hhhccccccCCCCEEECC-CCCCCCcccEEE-EECCEEEEEeecCCCC--------------------------------
Q 020682           96 SATFADLPAPDLEWEQMP-SAPVPRLDGAAI-QIKNLFYVFAGYGSLD--------------------------------  141 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~--------------------------------  141 (322)
                      ..+++.||+.+++|+.++ ++|.+|.+++++ .++++|||+||.+...                                
T Consensus        84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T TIGR03547        84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED  163 (346)
T ss_pred             cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence            347999999999999997 456667777766 6899999999985320                                


Q ss_pred             -CCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEe--CCCCcEEEcCCCCCC
Q 020682          142 -YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD--SETRKWDSIPPLPSP  218 (322)
Q Consensus       142 -~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd--~~t~~W~~~~~~p~~  218 (322)
                       ...+++++||+.+++|+.+++||.+ +|.++++++++++|||+||.......  ..+++.||  +++++|+++++||.+
T Consensus       164 ~~~~~~v~~YDp~t~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~y~~~~~~~~W~~~~~m~~~  240 (346)
T TIGR03547       164 YFWNKNVLSYDPSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGLR--TAEVKQYLFTGGKLEWNKLPPLPPP  240 (346)
T ss_pred             cCccceEEEEECCCCceeECccCCCC-cCCCceEEEECCEEEEEeeeeCCCcc--chheEEEEecCCCceeeecCCCCCC
Confidence             0136799999999999999999853 58889999999999999998644321  34565555  577899999999876


Q ss_pred             CC-------CcEEEEECCEEEEEeccCCCCCC------------CCcceEeeeeeccccccCceEeccCCCCCcCceeEE
Q 020682          219 RY-------SPATQLWRGRLHVMGGSKENRHT------------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF  279 (322)
Q Consensus       219 r~-------~~~~~~~~~~Lyv~GG~~~~~~~------------~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~  279 (322)
                      |.       .|.+++++++|||+||.+.....            ........++|+  +++++|+.+.+||..+.+++++
T Consensus       241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~lp~~~~~~~~~  318 (346)
T TIGR03547       241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA--LDNGKWSKVGKLPQGLAYGVSV  318 (346)
T ss_pred             CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE--ecCCcccccCCCCCCceeeEEE
Confidence            53       45577899999999998531100            000112333443  5599999999999988888888


Q ss_pred             EECCEEEEEecCCCC
Q 020682          280 VFNDRLFVVGGQEGD  294 (322)
Q Consensus       280 ~~~~~lyv~GG~~~~  294 (322)
                      +++++|||+||.+..
T Consensus       319 ~~~~~iyv~GG~~~~  333 (346)
T TIGR03547       319 SWNNGVLLIGGENSG  333 (346)
T ss_pred             EcCCEEEEEeccCCC
Confidence            999999999998754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.96  E-value=3e-28  Score=236.70  Aligned_cols=186  Identities=15%  Similarity=0.244  Sum_probs=154.3

Q ss_pred             hhhhccccccCCCCEEECCCC---CCC-CcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCC
Q 020682           95 LSATFADLPAPDLEWEQMPSA---PVP-RLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAH  169 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~---p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r  169 (322)
                      +.++++.||+.+++|+.++++   |.+ |..++++.++++||||||.+... .++++|+||+.+++|++++++.. |.+|
T Consensus       191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R  269 (470)
T PLN02193        191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR  269 (470)
T ss_pred             eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence            445799999999999988653   332 46888899999999999987554 45789999999999999988732 4489


Q ss_pred             ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEECCEEEEEeccCCCCCCCCc
Q 020682          170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGL  246 (322)
Q Consensus       170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~  246 (322)
                      ..|++++.+++|||+||.+....   ++++++||+.+++|+.+++   +|.+|..|++++++++||++||.++.. .+++
T Consensus       270 ~~h~~~~~~~~iYv~GG~~~~~~---~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv  345 (470)
T PLN02193        270 SFHSMAADEENVYVFGGVSATAR---LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDV  345 (470)
T ss_pred             cceEEEEECCEEEEECCCCCCCC---cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCce
Confidence            99999999999999999876544   6899999999999999874   677899999999999999999986532 3455


Q ss_pred             ceEeeeeeccccccCceEeccCC---CCCcCceeEEEECCEEEEEecCC
Q 020682          247 EHWSIAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQE  292 (322)
Q Consensus       247 ~~~~~~v~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~lyv~GG~~  292 (322)
                      ++||       +.+++|+++.++   |..|..+++++++++|||+||..
T Consensus       346 ~~yD-------~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~  387 (470)
T PLN02193        346 HYYD-------PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI  387 (470)
T ss_pred             EEEE-------CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence            5555       669999998654   77777789999999999999975

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.96  E-value=3.9e-28  Score=225.47  Aligned_cols=182  Identities=18%  Similarity=0.279  Sum_probs=144.6

Q ss_pred             hccccc-cC-CCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCce----EECCCCCCCCCCce
Q 020682           98 TFADLP-AP-DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSH  171 (322)
Q Consensus        98 ~~~~yd-~~-~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~p~~r~~  171 (322)
                      +++.|+ +. +.+|..+++||.||..+++++++++||++||.+... ..+++++||+.+++|    +.++++|.  +|..
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~--~~~~  116 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPF--TFEN  116 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCc--CccC
Confidence            555553 32 237999999999999888899999999999986544 356899999999998    67888887  7888


Q ss_pred             eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCC-CCCCcEEEEECCEEEEEeccCCCCCCCCcceEe
Q 020682          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS  250 (322)
Q Consensus       172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~  250 (322)
                      +++++.+++|||+||......   .+++++||+.+++|++++++|. +|..+.+++++++|||+||.+... ..++    
T Consensus       117 ~~~~~~~~~iYv~GG~~~~~~---~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~----  188 (323)
T TIGR03548       117 GSACYKDGTLYVGGGNRNGKP---SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDG----  188 (323)
T ss_pred             ceEEEECCEEEEEeCcCCCcc---CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccce----
Confidence            999999999999999754332   6899999999999999999884 799999999999999999986432 2223    


Q ss_pred             eeeeccccccCceEeccCC-----CCCcCce-eEEEECCEEEEEecCCC
Q 020682          251 IAVKDGKALEKAWRTEIPI-----PRGGPHR-ACFVFNDRLFVVGGQEG  293 (322)
Q Consensus       251 ~~v~~~~~~~~~W~~~~~~-----p~~~~~~-~~~~~~~~lyv~GG~~~  293 (322)
                         +.|||++++|+.++++     |+.+..+ ++++.+++|||+||.++
T Consensus       189 ---~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~  234 (323)
T TIGR03548       189 ---YKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK  234 (323)
T ss_pred             ---EEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence               3445779999998765     4443333 34555799999999863

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=99.96  E-value=7.4e-28  Score=233.96  Aligned_cols=191  Identities=18%  Similarity=0.291  Sum_probs=155.5

Q ss_pred             CCEEECCC---CCCCCcccEEEEECCEEEEEeecCCC-CCCcceeEEEECCCCceEECCCCC-CCC-CCceeEEEEeCCE
Q 020682          107 LEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMP-KDM-AHSHLGVVSDGRY  180 (322)
Q Consensus       107 ~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~~-~p~-~r~~~~~~~~~~~  180 (322)
                      ++|.++.+   +|.||..|+++.++++|||+||.... ....+++|+||+++++|+.++.+. .|. +|.++++++++++
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~  230 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST  230 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence            79999876   58899999999999999999998543 334467999999999999876542 222 3568899999999


Q ss_pred             EEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC---CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccc
Q 020682          181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK  257 (322)
Q Consensus       181 Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~  257 (322)
                      |||+||.+....   ++++++||+.+++|++++++   |.+|..|++++.+++|||+||.+.....++++.|+       
T Consensus       231 lYvfGG~~~~~~---~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd-------  300 (470)
T PLN02193        231 LYVFGGRDASRQ---YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYN-------  300 (470)
T ss_pred             EEEECCCCCCCC---CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEE-------
Confidence            999999876543   68999999999999999887   88999999999999999999997655555555555       


Q ss_pred             cccCceEeccC---CCCCcCceeEEEECCEEEEEecCCCC-----CCCCCCCCeeeee
Q 020682          258 ALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGD-----FMAKPGSPIFKCS  307 (322)
Q Consensus       258 ~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~~-----~~~~p~~~~~~~~  307 (322)
                      +.+++|+.+++   +|..+.++++++++++||++||.++.     ..|+|....|+..
T Consensus       301 ~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~  358 (470)
T PLN02193        301 IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV  358 (470)
T ss_pred             CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence            66999998764   56667777889999999999997643     4577777666544

>PHA03098 kelch-like protein; Provisional

Probab=99.96  E-value=4.1e-28  Score=239.85  Aligned_cols=194  Identities=19%  Similarity=0.306  Sum_probs=161.6

Q ss_pred             ccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeC
Q 020682           99 FADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG  178 (322)
Q Consensus        99 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~  178 (322)
                      +..|+....+|..++++|. +..+++++++++||++||.+......+++++||+.+++|..+++++.  +|.++++++.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~R~~~~~~~~~  342 (534)
T PHA03098        266 YITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY--PRKNPGVTVFN  342 (534)
T ss_pred             eeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc--ccccceEEEEC
Confidence            4467888889988876664 34568889999999999997766566789999999999999999987  78999999999


Q ss_pred             CEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCC-CCCCCcceEeeeeeccc
Q 020682          179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDGK  257 (322)
Q Consensus       179 ~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~-~~~~~~~~~~~~v~~~~  257 (322)
                      ++||++||.++...   .+++++||+.+++|+.++++|.+|..++++.++|+||++||.... ...+++++||       
T Consensus       343 ~~lyv~GG~~~~~~---~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd-------  412 (534)
T PHA03098        343 NRIYVIGGIYNSIS---LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS-------  412 (534)
T ss_pred             CEEEEEeCCCCCEe---cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe-------
Confidence            99999999874433   689999999999999999999999999999999999999997432 2234455554       


Q ss_pred             cccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC---------CCCCCCCCeee
Q 020682          258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD---------FMAKPGSPIFK  305 (322)
Q Consensus       258 ~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~---------~~~~p~~~~~~  305 (322)
                      |.+++|+.++++|.++.++++++++++|||+||.+..         ..|+|....|.
T Consensus       413 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            6799999999999999888999999999999997542         34677665544

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.96  E-value=1.6e-27  Score=225.66  Aligned_cols=189  Identities=19%  Similarity=0.218  Sum_probs=145.1

Q ss_pred             ccccccC--CCCEEECCCCC-CCCcccEEEEECCEEEEEeecCC-C----CCCcceeEEEECCCCceEECCCCCCCCCCc
Q 020682           99 FADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGS-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHS  170 (322)
Q Consensus        99 ~~~yd~~--~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~-~----~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~  170 (322)
                      ++.||..  +++|..++++| .+|..++++.++++|||+||... .    ....+++|+||+.+++|+.++++ .|.++.
T Consensus        52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~  130 (376)
T PRK14131         52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLA  130 (376)
T ss_pred             EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCccc
Confidence            5666664  57899999998 58999999999999999999864 1    12357899999999999999853 233667


Q ss_pred             eeEEEE-eCCEEEEEecccCCCC-------------------------------CCCCceEEEEeCCCCcEEEcCCCCC-
Q 020682          171 HLGVVS-DGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPS-  217 (322)
Q Consensus       171 ~~~~~~-~~~~Iyv~GG~~~~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~p~-  217 (322)
                      +|++++ .+++||++||.+....                               ....+++++||+.+++|+.++++|. 
T Consensus       131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~  210 (376)
T PRK14131        131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL  210 (376)
T ss_pred             ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC
Confidence            777776 8999999999753100                               0014789999999999999999996 


Q ss_pred             CCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcC--------ceeEEEECCEEEEEe
Q 020682          218 PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVG  289 (322)
Q Consensus       218 ~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~lyv~G  289 (322)
                      +|..++++.++++|||+||..... ....+.|+   ++++|++++|+.+++||..+.        ++.+++++++|||+|
T Consensus       211 ~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~---~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~G  286 (376)
T PRK14131        211 GTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQ---GKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAG  286 (376)
T ss_pred             CCCcceEEEECCEEEEEeeeECCC-cCChhheE---EEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEee
Confidence            788899999999999999975322 22333342   345678999999998876542        233578899999999


Q ss_pred             cCC
Q 020682          290 GQE  292 (322)
Q Consensus       290 G~~  292 (322)
                      |.+
T Consensus       287 G~~  289 (376)
T PRK14131        287 GAN  289 (376)
T ss_pred             ccC
Confidence            975

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.95  E-value=3.5e-27  Score=223.39  Aligned_cols=193  Identities=19%  Similarity=0.341  Sum_probs=147.4

Q ss_pred             hhhccccccCCCCEEECCC-CCCCCcccEEEE-ECCEEEEEeecCCCC--------------------------------
Q 020682           96 SATFADLPAPDLEWEQMPS-APVPRLDGAAIQ-IKNLFYVFAGYGSLD--------------------------------  141 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~--------------------------------  141 (322)
                      ..+++.||+.+++|+.+++ +|.+|.+|+++. .+++|||+||.+...                                
T Consensus       105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~  184 (376)
T PRK14131        105 FDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED  184 (376)
T ss_pred             cccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence            4589999999999999986 466677777776 799999999975310                                


Q ss_pred             -CCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceE--EEEeCCCCcEEEcCCCCCC
Q 020682          142 -YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWDSIPPLPSP  218 (322)
Q Consensus       142 -~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v--~~yd~~t~~W~~~~~~p~~  218 (322)
                       ...+++++||+.+++|+.++++|.+ +|.++++++.+++|||+||.......  ..++  +.||+++++|+.+++||.+
T Consensus       185 ~~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~~--~~~~~~~~~~~~~~~W~~~~~~p~~  261 (376)
T PRK14131        185 YFFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGLR--TDAVKQGKFTGNNLKWQKLPDLPPA  261 (376)
T ss_pred             cCcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCcC--ChhheEEEecCCCcceeecCCCCCC
Confidence             1236799999999999999988853 68888999999999999997654322  2444  4568899999999999887


Q ss_pred             CCC--------cEEEEECCEEEEEeccCCCCC----------C--CCcceEeeeeeccccccCceEeccCCCCCcCceeE
Q 020682          219 RYS--------PATQLWRGRLHVMGGSKENRH----------T--PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC  278 (322)
Q Consensus       219 r~~--------~~~~~~~~~Lyv~GG~~~~~~----------~--~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~  278 (322)
                      |..        +.+++.+++|||+||.+....          .  .....+..++  |||++++|+.+++||..+.++++
T Consensus       262 ~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--yd~~~~~W~~~~~lp~~r~~~~a  339 (376)
T PRK14131        262 PGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI--YALVNGKWQKVGELPQGLAYGVS  339 (376)
T ss_pred             CcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe--EEecCCcccccCcCCCCccceEE
Confidence            642        225678999999999753210          0  0011233333  33669999999999999988889


Q ss_pred             EEECCEEEEEecCCC
Q 020682          279 FVFNDRLFVVGGQEG  293 (322)
Q Consensus       279 ~~~~~~lyv~GG~~~  293 (322)
                      ++++++|||+||...
T Consensus       340 v~~~~~iyv~GG~~~  354 (376)
T PRK14131        340 VSWNNGVLLIGGETA  354 (376)
T ss_pred             EEeCCEEEEEcCCCC
Confidence            999999999999764

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.95  E-value=3.3e-27  Score=203.65  Aligned_cols=208  Identities=19%  Similarity=0.322  Sum_probs=170.5

Q ss_pred             hccccccCCCCEEECCC-------------CCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCC-C
Q 020682           98 TFADLPAPDLEWEQMPS-------------APVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-M  163 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~  163 (322)
                      ++..+|..+..|+++++             .|-.|.+|+++.+++++||-||.+......+.++.||++++.|.+..- -
T Consensus        45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G  124 (392)
T KOG4693|consen   45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG  124 (392)
T ss_pred             eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee
Confidence            68889999999999976             244589999999999999999998877777889999999999987432 1


Q ss_pred             CCCCCCceeEEEEeCCEEEEEecccCCC-CCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEECCEEEEEeccCC
Q 020682          164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKE  239 (322)
Q Consensus       164 ~~p~~r~~~~~~~~~~~Iyv~GG~~~~~-~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyv~GG~~~  239 (322)
                      -.|.+|-+|++|+.++.+|||||+.... ++  .++++.+|..|.+|+.+.   ..|.-|..|+++++++.+|||||...
T Consensus       125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~F--S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D  202 (392)
T KOG4693|consen  125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRF--SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSD  202 (392)
T ss_pred             ecCCccCCceeeEECcEEEEecChHHHHHhh--hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccc
Confidence            1244899999999999999999986533 33  689999999999999995   45667999999999999999999854


Q ss_pred             C--CCCCCcceEeeeeeccccccCceEeccC---CCCCcCceeEEEECCEEEEEecCCCC--------CCCCCCCCeeee
Q 020682          240 N--RHTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGD--------FMAKPGSPIFKC  306 (322)
Q Consensus       240 ~--~~~~~~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~~--------~~~~p~~~~~~~  306 (322)
                      .  .+..--+.|+-++..+|..++.|...++   .|.+|-+|+..+++++||+|||+++.        ..|+|.+.+|.-
T Consensus       203 ~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~  282 (392)
T KOG4693|consen  203 ESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSV  282 (392)
T ss_pred             cCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchhee
Confidence            2  3444456676666667778999998654   67888888999999999999998874        457888877754


Q ss_pred             e
Q 020682          307 S  307 (322)
Q Consensus       307 ~  307 (322)
                      .
T Consensus       283 I  283 (392)
T KOG4693|consen  283 I  283 (392)
T ss_pred             e
Confidence            3

>PHA02790 Kelch-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=226.28  Aligned_cols=189  Identities=17%  Similarity=0.227  Sum_probs=146.9

Q ss_pred             cccccccCCceeecCCCccchhhhhhhhhhhhhccCCchhhhhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEE
Q 020682           53 ASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFY  132 (322)
Q Consensus        53 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ly  132 (322)
                      ...|++.++.+..+|.+...+.........+.+--..+...  ..+++.||+.+++|+.+++||.+|..+++++++++||
T Consensus       289 v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY  366 (480)
T PHA02790        289 AIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY  366 (480)
T ss_pred             EEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence            34567777778888776332222111111222211111111  1468999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc
Q 020682          133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI  212 (322)
Q Consensus       133 v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~  212 (322)
                      |+||.+...   +.+++|||++++|+.+++|+.  +|..+++++++++|||+||.           +++||+++++|+.+
T Consensus       367 viGG~~~~~---~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~~~~~~IYv~GG~-----------~e~ydp~~~~W~~~  430 (480)
T PHA02790        367 VIGGHSETD---TTTEYLLPNHDQWQFGPSTYY--PHYKSCALVFGRRLFLVGRN-----------AEFYCESSNTWTLI  430 (480)
T ss_pred             EecCcCCCC---ccEEEEeCCCCEEEeCCCCCC--ccccceEEEECCEEEEECCc-----------eEEecCCCCcEeEc
Confidence            999985432   569999999999999999998  78889999999999999982           57899999999999


Q ss_pred             CCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEec
Q 020682          213 PPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (322)
Q Consensus       213 ~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~  266 (322)
                      ++||.+|..+++++++|+||++||.++....+++++||       |++++|+..
T Consensus       431 ~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd-------~~~~~W~~~  477 (480)
T PHA02790        431 DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN-------NRTYSWNIW  477 (480)
T ss_pred             CCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEE-------CCCCeEEec
Confidence            99999999999999999999999987544445556665       779999764

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.94  E-value=1.6e-26  Score=199.35  Aligned_cols=197  Identities=17%  Similarity=0.267  Sum_probs=156.6

Q ss_pred             hhhhhhhccccccCCCCEEEC---CCCCCCCcccEEEEECCEEEEEeecCC-CCCCcceeEEEECCCCceEECCCCCCC-
Q 020682           92 ERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFDMPKD-  166 (322)
Q Consensus        92 ~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~p-  166 (322)
                      .+...+.++.||+++++|.+.   .-+|..|.+|++|++++.+|||||+.+ ...+.++++++|+.+-+|+.+.....| 
T Consensus       100 ~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp  179 (392)
T KOG4693|consen  100 DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP  179 (392)
T ss_pred             cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence            355666899999999999876   457899999999999999999999954 456778999999999999998766554 


Q ss_pred             CCCceeEEEEeCCEEEEEecccCCCCC------CCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEECCEEEEEecc
Q 020682          167 MAHSHLGVVSDGRYIYIVSGQYGPQCR------GPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGS  237 (322)
Q Consensus       167 ~~r~~~~~~~~~~~Iyv~GG~~~~~~~------~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyv~GG~  237 (322)
                      .=|-.|+++++++.+|||||.......      .--+.+..+|.+|..|.+.++   .|..|..|++.+++++||+|||+
T Consensus       180 rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGY  259 (392)
T KOG4693|consen  180 RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGY  259 (392)
T ss_pred             hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEeccc
Confidence            237889999999999999998543211      013678899999999999864   57789999999999999999999


Q ss_pred             CCCCCCCCcceEeeeeeccccccCceEeccC---CCCCcCceeEEEECCEEEEEecCCC
Q 020682          238 KENRHTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEG  293 (322)
Q Consensus       238 ~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~  293 (322)
                      ++.     +.+.-.++|.|||.+..|..+.+   -|.+|-..++++.++|+|+|||..-
T Consensus       260 ng~-----ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  260 NGT-----LNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             chh-----hhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence            874     22222345556699999998733   3433333489999999999999653

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.93  E-value=3.1e-25  Score=201.28  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=152.4

Q ss_pred             hhhhccccccCCCCEE--ECCCCCCCCcccEEEEE--CCEEEEEeecCC---CCCCcceeEEEECCCCceEECCCCCCCC
Q 020682           95 LSATFADLPAPDLEWE--QMPSAPVPRLDGAAIQI--KNLFYVFAGYGS---LDYVHSHVDVYNFTDNKWVDRFDMPKDM  167 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~p~  167 (322)
                      +...+..++..+.+=.  ...+.|.||.++.+.+.  .+.|++|||.--   ...+++++|.||+++++|+++.....|.
T Consensus        41 i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~  120 (521)
T KOG1230|consen   41 IAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPP  120 (521)
T ss_pred             HHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcC
Confidence            3334556655554222  22456899999988865  678999999832   3457789999999999999998887777


Q ss_pred             CCceeEEEEeC-CEEEEEecccCC---CCCCCCceEEEEeCCCCcEEEcC--CCCCCCCCcEEEEECCEEEEEeccCCCC
Q 020682          168 AHSHLGVVSDG-RYIYIVSGQYGP---QCRGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKENR  241 (322)
Q Consensus       168 ~r~~~~~~~~~-~~Iyv~GG~~~~---~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~Lyv~GG~~~~~  241 (322)
                      +|+.|.++++- +.+|+|||....   ..+.+..++|+||..+++|+++.  .-|.+|++|.|+++..+|++|||+... 
T Consensus       121 pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~-  199 (521)
T KOG1230|consen  121 PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS-  199 (521)
T ss_pred             CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC-
Confidence            99999999884 899999998532   23455799999999999999994  578999999999999999999999763 


Q ss_pred             CCCCcceEeeeeeccccccCceEeccC---CCCCcCceeEEEE-CCEEEEEecCCCC
Q 020682          242 HTPGLEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGD  294 (322)
Q Consensus       242 ~~~~~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~-~~~lyv~GG~~~~  294 (322)
                        +..++|-.+||.||..+-+|+++.+   -|.+|+++.+.+. +|.|||.|||...
T Consensus       200 --nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~  254 (521)
T KOG1230|consen  200 --NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQ  254 (521)
T ss_pred             --CCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHh
Confidence              2234444455555556999999744   4677777788887 9999999997644

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.92  E-value=3.2e-24  Score=208.50  Aligned_cols=188  Identities=18%  Similarity=0.297  Sum_probs=163.7

Q ss_pred             hccccccCCCCEEECC---CCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCCceeE
Q 020682           98 TFADLPAPDLEWEQMP---SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r~~~~  173 (322)
                      +++.+|..+..|....   ..|.+|.+|.++.++++||+|||.+......++++.||+.+.+|..+..... |.+|.+|+
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs  168 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS  168 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence            5999999999998764   4678999999999999999999998644446789999999999999876655 66899999


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEECCEEEEEeccC-CCCCCCCcceE
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHW  249 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyv~GG~~-~~~~~~~~~~~  249 (322)
                      ++++++++|||||.+.....  .+++++||+++.+|.++.   +.|.||++|++++++++++|+||.. +..++++++.+
T Consensus       169 ~~~~g~~l~vfGG~~~~~~~--~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l  246 (482)
T KOG0379|consen  169 ATVVGTKLVVFGGIGGTGDS--LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL  246 (482)
T ss_pred             EEEECCEEEEECCccCcccc--eeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee
Confidence            99999999999999876632  799999999999999994   6788999999999999999999987 66788888888


Q ss_pred             eeeeeccccccCceEecc---CCCCCcCceeEEEECCEEEEEecCCCC
Q 020682          250 SIAVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGD  294 (322)
Q Consensus       250 ~~~v~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~lyv~GG~~~~  294 (322)
                      |+.       +.+|..+.   ..|.+|..|..++.+++++++||....
T Consensus       247 dl~-------~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~  287 (482)
T KOG0379|consen  247 DLS-------TWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP  287 (482)
T ss_pred             ecc-------cceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence            865       89998653   478888888999999999999997764

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.90  E-value=3e-23  Score=188.51  Aligned_cols=203  Identities=19%  Similarity=0.316  Sum_probs=153.0

Q ss_pred             chhhhhhhhccccccCCCCEEEC--CCCCCCCcccEEEEEC-CEEEEEeecCCC---C--CCcceeEEEECCCCceEECC
Q 020682           90 DAERFLSATFADLPAPDLEWEQM--PSAPVPRLDGAAIQIK-NLFYVFAGYGSL---D--YVHSHVDVYNFTDNKWVDRF  161 (322)
Q Consensus        90 ~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~-~~lyv~GG~~~~---~--~~~~~v~~yd~~~~~W~~~~  161 (322)
                      ..+..+-++++.||...++|+++  +..|.||+.|.++++. +.+|+|||.-..   .  .-+.|+|.||..+++|+++.
T Consensus        91 gqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~  170 (521)
T KOG1230|consen   91 GQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE  170 (521)
T ss_pred             ceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence            34556667999999999999998  4568999999998874 899999998321   1  23468999999999999998


Q ss_pred             CCCCCCCCceeEEEEeCCEEEEEecccCCCC-CCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEE-CCEEEEEec
Q 020682          162 DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQC-RGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLW-RGRLHVMGG  236 (322)
Q Consensus       162 ~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~-~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~-~~~Lyv~GG  236 (322)
                      ....|.+|++|-+++..++|++|||...... ..-++++++||+.|-+|+++.+   .|.+|++|.+.+. +|.|||+||
T Consensus       171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG  250 (521)
T KOG1230|consen  171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG  250 (521)
T ss_pred             cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence            7777779999999999999999999865432 2226999999999999999953   4889999999988 999999999


Q ss_pred             cCCCCCCCC-------cceEeeeeeccccccCceEeccC---CCCCcCceeEEEE-CCEEEEEecCC
Q 020682          237 SKENRHTPG-------LEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQE  292 (322)
Q Consensus       237 ~~~~~~~~~-------~~~~~~~v~~~~~~~~~W~~~~~---~p~~~~~~~~~~~-~~~lyv~GG~~  292 (322)
                      +.......+       .+.|.+.-.+.+..+-+|+.+.|   -|.+|.++++++. +++.|.|||.-
T Consensus       251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~  317 (521)
T KOG1230|consen  251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC  317 (521)
T ss_pred             hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence            964321111       12333331111111367888754   3555555577766 55999999943

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.90  E-value=1.7e-22  Score=196.50  Aligned_cols=180  Identities=23%  Similarity=0.385  Sum_probs=146.1

Q ss_pred             CCCCCCCcccEEEEECCEEEEEeecCCCCCCcc-eeEEEECCCCceEECCCC-CCCCCCceeEEEEeCCEEEEEecccCC
Q 020682          113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGP  190 (322)
Q Consensus       113 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~Iyv~GG~~~~  190 (322)
                      ...|.+|..|+++.+++++|||||........+ ++|++|.++..|.....- ..|.+|.+|.++..+++||+|||.+..
T Consensus        55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~  134 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK  134 (482)
T ss_pred             CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence            346889999999999999999999865544333 699999999999875432 335589999999999999999999862


Q ss_pred             CCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEECCEEEEEeccCCCC-CCCCcceEeeeeeccccccCceEec
Q 020682          191 QCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTE  266 (322)
Q Consensus       191 ~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~Lyv~GG~~~~~-~~~~~~~~~~~v~~~~~~~~~W~~~  266 (322)
                      .  ..+++++.||+.|.+|..+.   ..|.+|.+|++++.+++||||||.+... ..++++.||       +++.+|.++
T Consensus       135 ~--~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d-------~~~~~W~~~  205 (482)
T KOG0379|consen  135 Y--RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD-------LETSTWSEL  205 (482)
T ss_pred             C--CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec-------cccccceec
Confidence            2  22789999999999999985   4688999999999999999999987654 444444444       569999986


Q ss_pred             ---cCCCCCcCceeEEEECCEEEEEecCC-CCCCCCCCC
Q 020682          267 ---IPIPRGGPHRACFVFNDRLFVVGGQE-GDFMAKPGS  301 (322)
Q Consensus       267 ---~~~p~~~~~~~~~~~~~~lyv~GG~~-~~~~~~p~~  301 (322)
                         .+.|.+|.+|+++++++++++|||.+ +..++++..
T Consensus       206 ~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~  244 (482)
T KOG0379|consen  206 DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH  244 (482)
T ss_pred             ccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceE
Confidence               45677888889999999999999998 555554443

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=6.8e-21  Score=177.05  Aligned_cols=200  Identities=16%  Similarity=0.212  Sum_probs=159.0

Q ss_pred             hhhhhhhccccccCCCCEEEC---CCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC-----
Q 020682           92 ERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-----  163 (322)
Q Consensus        92 ~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----  163 (322)
                      .+.+.+.+..||..+++|...   .+.|.+-..|..+..|.+||+|||+-+.+.+.+++|..-....+|+++.+-     
T Consensus        52 NEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG  131 (830)
T KOG4152|consen   52 NEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNG  131 (830)
T ss_pred             cccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCC
Confidence            344556899999999999875   467888888898999999999999999998888888777778888887543     


Q ss_pred             CCCCCCceeEEEEeCCEEEEEecccCCCC------CCCCceEEEEeCCCC----cEEEc---CCCCCCCCCcEEEEE---
Q 020682          164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQC------RGPTSRTFVLDSETR----KWDSI---PPLPSPRYSPATQLW---  227 (322)
Q Consensus       164 ~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~------~~~~~~v~~yd~~t~----~W~~~---~~~p~~r~~~~~~~~---  227 (322)
                      +.|.+|-+|+....++|-|+|||..+...      ..-++|++.+++.-+    .|...   ..+|.+|..|.++++   
T Consensus       132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eK  211 (830)
T KOG4152|consen  132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEK  211 (830)
T ss_pred             CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEec
Confidence            23668999999999999999999743221      112789999888744    38876   478999999999988   


Q ss_pred             ---CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEe-----ccCCCCCcCceeEEEECCEEEEEecCCCCCCCCC
Q 020682          228 ---RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT-----EIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKP  299 (322)
Q Consensus       228 ---~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~-----~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p  299 (322)
                         ..++||+||..+-+ +.+++..|++       +..|.+     +.||||..+  ++.+++||+|||||+.-..+-+-
T Consensus       212 Ds~~skmvvyGGM~G~R-LgDLW~Ldl~-------Tl~W~kp~~~G~~PlPRSLH--sa~~IGnKMyvfGGWVPl~~~~~  281 (830)
T KOG4152|consen  212 DSKKSKMVVYGGMSGCR-LGDLWTLDLD-------TLTWNKPSLSGVAPLPRSLH--SATTIGNKMYVFGGWVPLVMDDV  281 (830)
T ss_pred             cCCcceEEEEccccccc-ccceeEEecc-------eeecccccccCCCCCCcccc--cceeecceeEEecceeeeecccc
Confidence               34799999998754 6677777765       999987     467888776  88999999999999876655544


Q ss_pred             CC
Q 020682          300 GS  301 (322)
Q Consensus       300 ~~  301 (322)
                      ..
T Consensus       282 ~~  283 (830)
T KOG4152|consen  282 KV  283 (830)
T ss_pred             cc
Confidence            43

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=3.6e-20  Score=172.23  Aligned_cols=189  Identities=21%  Similarity=0.349  Sum_probs=149.5

Q ss_pred             hhhhhccccccCCCCEEECCC-------CCCCCcccEEEEECCEEEEEeecCC--------CCCCcceeEEEECCCC---
Q 020682           94 FLSATFADLPAPDLEWEQMPS-------APVPRLDGAAIQIKNLFYVFAGYGS--------LDYVHSHVDVYNFTDN---  155 (322)
Q Consensus        94 ~~~~~~~~yd~~~~~W~~~~~-------~p~~r~~~~~~~~~~~lyv~GG~~~--------~~~~~~~v~~yd~~~~---  155 (322)
                      ..+++++.+...+-+|+++.+       +|.||.+|+...+++|-|+|||..+        -..+++|+|+.+..-.   
T Consensus       105 kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv  184 (830)
T KOG4152|consen  105 KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV  184 (830)
T ss_pred             cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence            345567777777778988843       5789999999999999999999722        2246789999888733   


Q ss_pred             -ceEECC-CCCCCCCCceeEEEEe------CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEE
Q 020682          156 -KWVDRF-DMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPAT  224 (322)
Q Consensus       156 -~W~~~~-~~~~p~~r~~~~~~~~------~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~  224 (322)
                       .|...- .-+.|.+|..|.++++      ..++||+||..+-.    +.|+|.+|++|-+|.+..   ..|.||+-|++
T Consensus       185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa  260 (830)
T KOG4152|consen  185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSA  260 (830)
T ss_pred             EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccCCCCCCcccccc
Confidence             387632 2333558999999987      35899999998755    799999999999999874   45778999999


Q ss_pred             EEECCEEEEEeccCC-----C---------CCCCCcceEeeeeeccccccCceEec-------cCCCCCcCceeEEEECC
Q 020682          225 QLWRGRLHVMGGSKE-----N---------RHTPGLEHWSIAVKDGKALEKAWRTE-------IPIPRGGPHRACFVFND  283 (322)
Q Consensus       225 ~~~~~~Lyv~GG~~~-----~---------~~~~~~~~~~~~v~~~~~~~~~W~~~-------~~~p~~~~~~~~~~~~~  283 (322)
                      ++++|++|||||.--     .         ...+++-+|+++       +..|+.+       ..+||+|.+|+++.++.
T Consensus       261 ~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld-------t~~W~tl~~d~~ed~tiPR~RAGHCAvAigt  333 (830)
T KOG4152|consen  261 TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD-------TMAWETLLMDTLEDNTIPRARAGHCAVAIGT  333 (830)
T ss_pred             eeecceeEEecceeeeeccccccccccceeeeccceeeeeec-------chheeeeeeccccccccccccccceeEEecc
Confidence            999999999999621     1         124556677765       9999985       23899999999999999


Q ss_pred             EEEEEecCCC
Q 020682          284 RLFVVGGQEG  293 (322)
Q Consensus       284 ~lyv~GG~~~  293 (322)
                      +|||..|.+|
T Consensus       334 RlYiWSGRDG  343 (830)
T KOG4152|consen  334 RLYIWSGRDG  343 (830)
T ss_pred             EEEEEeccch
Confidence            9999999876

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.69  E-value=5.2e-16  Score=139.73  Aligned_cols=193  Identities=20%  Similarity=0.319  Sum_probs=144.5

Q ss_pred             cccccCCCCEEECCCCC-CCCcccEEEEECCEEEEEeecCCCC----CCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682          100 ADLPAPDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus       100 ~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~----~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~  174 (322)
                      ...+.....|++++.+| .+|.+...++++++||||||.....    ...+++|+|||.+|+|+++.... |..-.++.+
T Consensus        63 ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~  141 (381)
T COG3055          63 LDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGAST  141 (381)
T ss_pred             hhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-cccccccee
Confidence            34455567999999998 5688888899999999999985433    35689999999999999986553 335677888


Q ss_pred             EEeCC-EEEEEecccCCC-------------------------------CCCCCceEEEEeCCCCcEEEcCCCCC-CCCC
Q 020682          175 VSDGR-YIYIVSGQYGPQ-------------------------------CRGPTSRTFVLDSETRKWDSIPPLPS-PRYS  221 (322)
Q Consensus       175 ~~~~~-~Iyv~GG~~~~~-------------------------------~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~  221 (322)
                      +.+++ +||++||.+...                               .......+..|||++++|+.+...|- ++++
T Consensus       142 ~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG  221 (381)
T COG3055         142 FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG  221 (381)
T ss_pred             EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC
Confidence            88876 999999963211                               01124678999999999999986554 5666


Q ss_pred             cEEEEECCEEEEEeccCCC--C----------------------------------------------------------
Q 020682          222 PATQLWRGRLHVMGGSKEN--R----------------------------------------------------------  241 (322)
Q Consensus       222 ~~~~~~~~~Lyv~GG~~~~--~----------------------------------------------------------  241 (322)
                      .+.+.-+|+|.++-|.-..  +                                                          
T Consensus       222 sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~  301 (381)
T COG3055         222 SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALK  301 (381)
T ss_pred             cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHH
Confidence            6655566667777664110  0                                                          


Q ss_pred             ---------CCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCC
Q 020682          242 ---------HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF  295 (322)
Q Consensus       242 ---------~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~  295 (322)
                               +..-...|+-+||.+|  ++.|+.+..+|++......+..++++|++||.+...
T Consensus       302 ~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~G  362 (381)
T COG3055         302 AYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGG  362 (381)
T ss_pred             HHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCC
Confidence                     0001234566889988  999999999999888878889999999999988654

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.62  E-value=6.7e-15  Score=132.62  Aligned_cols=182  Identities=19%  Similarity=0.286  Sum_probs=141.1

Q ss_pred             EECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECC--CCceEECCCCCCCCCCceeEEEEeCCEEEEEecc
Q 020682          110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ  187 (322)
Q Consensus       110 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~  187 (322)
                      .++|++|.+-.+.+-+.+++.+||--|..+.     +.+..|.+  .+.|+.++..|.+ +|.+..+++.+++||||||.
T Consensus        28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~  101 (381)
T COG3055          28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY  101 (381)
T ss_pred             ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence            3568899998888888999999998774333     35666665  4689999999986 79999999999999999998


Q ss_pred             cCCCC--CCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEECC-EEEEEeccCCCCC---------------------
Q 020682          188 YGPQC--RGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRG-RLHVMGGSKENRH---------------------  242 (322)
Q Consensus       188 ~~~~~--~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~-~Lyv~GG~~~~~~---------------------  242 (322)
                      .....  .+.++++++|||.+++|+++. ..|....++.++..++ +||++||++....                     
T Consensus       102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~  181 (381)
T COG3055         102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII  181 (381)
T ss_pred             ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence            54433  334799999999999999996 4567788888999888 8999999854211                     


Q ss_pred             ------CCCcceEeeeeeccccccCceEeccCCCC-CcCceeEEEECCEEEEEecCCCCCCC
Q 020682          243 ------TPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMA  297 (322)
Q Consensus       243 ------~~~~~~~~~~v~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~lyv~GG~~~~~~~  297 (322)
                            ...-+.|+-++..|+|++++|+.+...|- +.++.+++.-+|++.++-|+-.....
T Consensus       182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLR  243 (381)
T COG3055         182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLR  243 (381)
T ss_pred             HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCcc
Confidence                  22334677788999999999999887664 34444555667889999996655443

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.51  E-value=7.7e-15  Score=136.76  Aligned_cols=188  Identities=18%  Similarity=0.233  Sum_probs=137.5

Q ss_pred             ccCCCCEEECCCC----------CCCCcccEEEEEC--CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC-CCCCC
Q 020682          103 PAPDLEWEQMPSA----------PVPRLDGAAIQIK--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAH  169 (322)
Q Consensus       103 d~~~~~W~~~~~~----------p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~p~~r  169 (322)
                      .+....|.++++.          |..|.+|.++...  +.||+.||+++...+ .|+|.|+...+.|..+.... .|..|
T Consensus       235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l-~DFW~Y~v~e~~W~~iN~~t~~PG~R  313 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDL-ADFWAYSVKENQWTCINRDTEGPGAR  313 (723)
T ss_pred             ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhH-HHHHhhcCCcceeEEeecCCCCCcch
Confidence            3445689887542          5678999999775  499999999998876 56999999999999876543 45589


Q ss_pred             ceeEEEEeC--CEEEEEecccCCCC---CCCCceEEEEeCCCCcEEEcC------CCCCCCCCcEEEEECCE--EEEEec
Q 020682          170 SHLGVVSDG--RYIYIVSGQYGPQC---RGPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGG  236 (322)
Q Consensus       170 ~~~~~~~~~--~~Iyv~GG~~~~~~---~~~~~~v~~yd~~t~~W~~~~------~~p~~r~~~~~~~~~~~--Lyv~GG  236 (322)
                      ++|-+++.-  .|+|++|-+-+...   ...-+++|.||..++.|.-+.      ..|...+.|.|++.+++  |||+||
T Consensus       314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG  393 (723)
T KOG2437|consen  314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG  393 (723)
T ss_pred             hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence            999999984  49999997754332   122489999999999999884      35677899999999998  999999


Q ss_pred             cCCCCCCCCcceEeeeeeccccccCceEeccC------------CCCCcCceeEEEECCEEEEEecCCCCC
Q 020682          237 SKENRHTPGLEHWSIAVKDGKALEKAWRTEIP------------IPRGGPHRACFVFNDRLFVVGGQEGDF  295 (322)
Q Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~------------~p~~~~~~~~~~~~~~lyv~GG~~~~~  295 (322)
                      ..-...   ...|. -+|.|+.+...|..+..            ..|-+..+-.+.-++++|++||+....
T Consensus       394 r~~~~~---e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~  460 (723)
T KOG2437|consen  394 RILTCN---EPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT  460 (723)
T ss_pred             eeccCC---Ccccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce
Confidence            854321   12222 14445566888886422            122233334566788999999977653

>PF13964 Kelch_6: Kelch motif

Probab=99.32  E-value=5.2e-12  Score=84.21  Aligned_cols=50  Identities=28%  Similarity=0.530  Sum_probs=44.9

Q ss_pred             CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCC
Q 020682          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR  219 (322)
Q Consensus       168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r  219 (322)
                      +|.++++++.+++|||+||.....  ..++++++||++|++|+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~--~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSG--KYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCC--CccccEEEEcCCCCcEEECCCCCCCC
Confidence            588999999999999999998742  23799999999999999999999987

>PF13964 Kelch_6: Kelch motif

Probab=99.27  E-value=1.4e-11  Score=82.18  Aligned_cols=48  Identities=29%  Similarity=0.556  Sum_probs=44.3

Q ss_pred             CCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC
Q 020682          118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK  165 (322)
Q Consensus       118 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~  165 (322)
                      ||.+++++.++++|||+||........+++++||+++++|+++++||.
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            689999999999999999998766667889999999999999999998

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.10  E-value=1.2e-10  Score=76.49  Aligned_cols=47  Identities=34%  Similarity=0.592  Sum_probs=42.8

Q ss_pred             CCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC
Q 020682          118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP  164 (322)
Q Consensus       118 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~  164 (322)
                      ||.++++++++++|||+||.+......+++++||+++++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            68999999999999999999886777889999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.09  E-value=1.1e-10  Score=76.51  Aligned_cols=47  Identities=36%  Similarity=0.695  Sum_probs=41.3

Q ss_pred             CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC
Q 020682          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP  216 (322)
Q Consensus       168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p  216 (322)
                      ||.++++++.+++|||+||..+..  ..++++++||+++++|+++++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence            589999999999999999998832  23799999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.99  E-value=9.4e-10  Score=72.89  Aligned_cols=49  Identities=24%  Similarity=0.488  Sum_probs=41.8

Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW  227 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~  227 (322)
                      +++|||+||.+... ...++++++||+.+++|++++++|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            58999999998322 12379999999999999999999999999999864

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.97  E-value=1.9e-09  Score=71.44  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=40.1

Q ss_pred             CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC
Q 020682          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP  216 (322)
Q Consensus       168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p  216 (322)
                      +|.+|++++.+++|||+||..........+++++||+++++|++++++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            5899999999999999999921111122699999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.97  E-value=1.8e-09  Score=71.49  Aligned_cols=47  Identities=28%  Similarity=0.515  Sum_probs=41.6

Q ss_pred             CCcccEEEEECCEEEEEeec--CCCCCCcceeEEEECCCCceEECCCCC
Q 020682          118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP  164 (322)
Q Consensus       118 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~~~~W~~~~~~~  164 (322)
                      ||.+|++++++++|||+||.  +......+++++||+++++|+++++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            68999999999999999999  455566789999999999999988774

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.96  E-value=3.6e-10  Score=105.95  Aligned_cols=128  Identities=15%  Similarity=0.245  Sum_probs=99.6

Q ss_pred             CCceEECCCC--------CCCCCCceeEEEEeCC--EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCC
Q 020682          154 DNKWVDRFDM--------PKDMAHSHLGVVSDGR--YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRY  220 (322)
Q Consensus       154 ~~~W~~~~~~--------~~p~~r~~~~~~~~~~--~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~  220 (322)
                      +..|.++...        ..|..|.+|.++...+  .||+.||.++.+.   +.++|.|....+.|..+.   ..|..|.
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~---l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs  314 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD---LADFWAYSVKENQWTCINRDTEGPGARS  314 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh---HHHHHhhcCCcceeEEeecCCCCCcchh
Confidence            4568876543        2366899999999855  9999999999886   799999999999999985   4788899


Q ss_pred             CcEEEEECC--EEEEEeccCCCC------CCCCcceEeeeeeccccccCceEeccC------CCCCcCceeEEEECCE--
Q 020682          221 SPATQLWRG--RLHVMGGSKENR------HTPGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHRACFVFNDR--  284 (322)
Q Consensus       221 ~~~~~~~~~--~Lyv~GG~~~~~------~~~~~~~~~~~v~~~~~~~~~W~~~~~------~p~~~~~~~~~~~~~~--  284 (322)
                      .|.|+..-.  +||++|-+-+..      ...+.+.||       ..++.|..+.-      -|..-+.|.++|.+++  
T Consensus       315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FD-------i~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~  387 (723)
T KOG2437|consen  315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFD-------IDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM  387 (723)
T ss_pred             hhhhhhhhhHhHHhhhhhccccccccccccccceEEEe-------cCCceeEEecccccccCCcceeecceeeEecCcce
Confidence            999997655  899999874432      223444555       44999998632      3666677889999999  


Q ss_pred             EEEEecC
Q 020682          285 LFVVGGQ  291 (322)
Q Consensus       285 lyv~GG~  291 (322)
                      |||+||.
T Consensus       388 iyVfGGr  394 (723)
T KOG2437|consen  388 IYVFGGR  394 (723)
T ss_pred             EEEecCe
Confidence            9999993

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.96  E-value=2e-09  Score=71.32  Aligned_cols=48  Identities=27%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             CCEEEEEeecC-CCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682          128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus       128 ~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      +++||||||.+ ......+++|+||+.+++|+++.++|.  +|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence            58999999998 456677899999999999999977776  8999999863

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.95  E-value=7.9e-10  Score=73.19  Aligned_cols=47  Identities=30%  Similarity=0.544  Sum_probs=32.2

Q ss_pred             CCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC
Q 020682          118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP  164 (322)
Q Consensus       118 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~  164 (322)
                      ||.+|+++.+ +++||||||.+.....++++|+||+++++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            6999999998 5899999999887777889999999999999997776

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.92  E-value=1.5e-09  Score=71.81  Aligned_cols=48  Identities=27%  Similarity=0.544  Sum_probs=30.9

Q ss_pred             CCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCC
Q 020682          168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS  217 (322)
Q Consensus       168 ~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~  217 (322)
                      ||.+|+++.. +++|||+||.+....  .+++++.||+++++|++++++|.
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~--~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGS--PLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TE--E---EEEEETTTTEEEE--SS--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCc--ccCCEEEEECCCCEEEECCCCCC
Confidence            5888999988 589999999987642  27999999999999999988874

>smart00612 Kelch Kelch domain

Probab=98.85  E-value=5.1e-09  Score=68.14  Aligned_cols=47  Identities=36%  Similarity=0.650  Sum_probs=41.0

Q ss_pred             EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECC
Q 020682          180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG  229 (322)
Q Consensus       180 ~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~  229 (322)
                      +||++||..+..   ..+++++||+.+++|+++++||.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQ---RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCc---eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            489999986532   26899999999999999999999999999988764

>smart00612 Kelch Kelch domain

Probab=98.73  E-value=2e-08  Score=65.29  Aligned_cols=47  Identities=30%  Similarity=0.426  Sum_probs=39.8

Q ss_pred             EEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCC
Q 020682          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR  179 (322)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~  179 (322)
                      +|||+||.... ...+++++||+.+++|+.+++|+.  +|..++++++++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccceEEEeCC
Confidence            48999998653 345789999999999999999988  788998888764

>PLN02772 guanylate kinase

Probab=98.66  E-value=1.9e-07  Score=87.56  Aligned_cols=87  Identities=16%  Similarity=0.257  Sum_probs=69.2

Q ss_pred             CCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC-CCCCCCceeEEEEe-CCEEEEEecccCCCCC
Q 020682          116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSD-GRYIYIVSGQYGPQCR  193 (322)
Q Consensus       116 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~  193 (322)
                      ..|+..++++.+++++||+||.+......+.+++||..+.+|....-. ..|.+|.+|+++++ +++|+|+++.....  
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--   99 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--   99 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence            358899999999999999999877654667899999999999875422 22458999999988 68999998754432  


Q ss_pred             CCCceEEEEeCCCC
Q 020682          194 GPTSRTFVLDSETR  207 (322)
Q Consensus       194 ~~~~~v~~yd~~t~  207 (322)
                         +++|.+...|.
T Consensus       100 ---~~~w~l~~~t~  110 (398)
T PLN02772        100 ---DSIWFLEVDTP  110 (398)
T ss_pred             ---cceEEEEcCCH
Confidence               67888776653

>PF13854 Kelch_5: Kelch motif

Probab=98.56  E-value=1.6e-07  Score=59.98  Aligned_cols=40  Identities=25%  Similarity=0.532  Sum_probs=35.9

Q ss_pred             CCCCCcccEEEEECCEEEEEeecCC-CCCCcceeEEEECCC
Q 020682          115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTD  154 (322)
Q Consensus       115 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~  154 (322)
                      +|.||.+|+++.++++|||+||... .....+++|+||+.+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            4889999999999999999999984 667778999999876

>PLN02772 guanylate kinase

Probab=98.48  E-value=1e-06  Score=82.75  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             CCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC---CCCCCCCCcEEEEE-CCEEEEEeccC
Q 020682          168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSK  238 (322)
Q Consensus       168 ~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~Lyv~GG~~  238 (322)
                      ++.+++++.+++++||+||.+.....  .+.+++||+.|.+|....   +.|.+|.+|+++++ +++|+|+++..
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~~~--~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGNTL--SIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCccc--cceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            67889999999999999998764321  589999999999999874   67889999999988 56899998754

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.43  E-value=4.9e-05  Score=67.03  Aligned_cols=181  Identities=14%  Similarity=0.218  Sum_probs=109.2

Q ss_pred             hccccccCCCCEEECCCCCCCCc--cc--EEEEEC-----CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCC
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRL--DG--AAIQIK-----NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA  168 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~--~~--~~~~~~-----~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~  168 (322)
                      .+..+||.+.+|..+++.+.++.  ..  .....+     -||..+....... ....+++|+..++.|+.+...+....
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~   93 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHP   93 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCcc
Confidence            57889999999999987554321  11  111122     2565554432111 22468999999999999875432111


Q ss_pred             CceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEE-cCCCCCCC----CCcEEEEECCEEEEEeccCCCCCC
Q 020682          169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS-IPPLPSPR----YSPATQLWRGRLHVMGGSKENRHT  243 (322)
Q Consensus       169 r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r----~~~~~~~~~~~Lyv~GG~~~~~~~  243 (322)
                      ... ..+.++|.||-+........   ...+..||..+.+|++ ++ +|..+    ....++.++|+|.++.....   .
T Consensus        94 ~~~-~~v~~~G~lyw~~~~~~~~~---~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~  165 (230)
T TIGR01640        94 LKS-RGVCINGVLYYLAYTLKTNP---DYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD---T  165 (230)
T ss_pred             ccC-CeEEECCEEEEEEEECCCCC---cEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC---C
Confidence            122 25667888888874322111   1379999999999996 54 34332    23467788999988765432   1


Q ss_pred             CCcceEeeeeeccccccCceEeccCCC-----CCc--CceeEEEECCEEEEEecC
Q 020682          244 PGLEHWSIAVKDGKALEKAWRTEIPIP-----RGG--PHRACFVFNDRLFVVGGQ  291 (322)
Q Consensus       244 ~~~~~~~~~v~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~lyv~GG~  291 (322)
                      ..++.|.++  +++  +.+|++.-.++     ...  .....+..+++|++..+.
T Consensus       166 ~~~~IWvl~--d~~--~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~  216 (230)
T TIGR01640       166 NNFDLWVLN--DAG--KQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED  216 (230)
T ss_pred             CcEEEEEEC--CCC--CCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence            347788754  343  55699853322     111  123456678888887763

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF13854 Kelch_5: Kelch motif

Probab=98.40  E-value=7.3e-07  Score=56.87  Aligned_cols=41  Identities=24%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       166 p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      |.+|.+|++++++++|||+||... .....++++|+||+.+.
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence            348999999999999999999985 11223799999999763

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.75  E-value=0.0013  Score=58.64  Aligned_cols=157  Identities=13%  Similarity=0.144  Sum_probs=94.4

Q ss_pred             EEEeecCCCCCCcceeEEEECCCCc--------eE---ECCCCCCCCCCceeEEEEe----CCEEEEEecccCCC-----
Q 020682          132 YVFAGYGSLDYVHSHVDVYNFTDNK--------WV---DRFDMPKDMAHSHLGVVSD----GRYIYIVSGQYGPQ-----  191 (322)
Q Consensus       132 yv~GG~~~~~~~~~~v~~yd~~~~~--------W~---~~~~~~~p~~r~~~~~~~~----~~~Iyv~GG~~~~~-----  191 (322)
                      ++-||...++++.+++|+.......        .+   .+.+.|.  +|++|++-++    +....+|||..-..     
T Consensus        42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT  119 (337)
T PF03089_consen   42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT  119 (337)
T ss_pred             EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence            4458888888888888887665433        11   1334555  8999999887    34578889863110     


Q ss_pred             ------CCCCCceEEEEeCCCCcEE--EcCCCCCCCCCcEEEEECCEEEEEeccCCC--CCCCCcceEeeeeeccccccC
Q 020682          192 ------CRGPTSRTFVLDSETRKWD--SIPPLPSPRYSPATQLWRGRLHVMGGSKEN--RHTPGLEHWSIAVKDGKALEK  261 (322)
Q Consensus       192 ------~~~~~~~v~~yd~~t~~W~--~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~--~~~~~~~~~~~~v~~~~~~~~  261 (322)
                            .......|+..|++-+..+  .+|.+....+.|.+..-+|.+|++||..-.  ...+.+.+..+++....|. -
T Consensus       120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~-v  198 (337)
T PF03089_consen  120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPA-V  198 (337)
T ss_pred             hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCce-e
Confidence                  0011356888898877665  356777888999999999999999998543  2344454444432222211 0


Q ss_pred             ceEeccCCCCCcCceeEE---EECCEEEEEecCCCC
Q 020682          262 AWRTEIPIPRGGPHRACF---VFNDRLFVVGGQEGD  294 (322)
Q Consensus       262 ~W~~~~~~p~~~~~~~~~---~~~~~lyv~GG~~~~  294 (322)
                      .-+.   ++.+..-.+++   +-.++.+|+|||..+
T Consensus       199 sC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd  231 (337)
T PF03089_consen  199 SCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD  231 (337)
T ss_pred             EEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence            1111   22222111111   224778899998754

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.73  E-value=0.0011  Score=58.85  Aligned_cols=141  Identities=14%  Similarity=0.171  Sum_probs=87.1

Q ss_pred             eEEEECCCCceEECCCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCC----CcEEEcC-CCCCCCC
Q 020682          147 VDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPRY  220 (322)
Q Consensus       147 v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~r~  220 (322)
                      -..||+.+++++.+.....   -.+.+.++ -++++.+.||....     ...+..|++.+    ..|.+.+ .|..+|.
T Consensus        48 s~~yD~~tn~~rpl~v~td---~FCSgg~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTD---TFCSGGAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEeccCCCC---CcccCcCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCc
Confidence            4569999999998765433   23333333 37899999997542     35677788765    6799886 5889999


Q ss_pred             CcEEEEE-CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEecc----CCCCCcCceeEEEECCEEEEEecCCCCC
Q 020682          221 SPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFNDRLFVVGGQEGDF  295 (322)
Q Consensus       221 ~~~~~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~lyv~GG~~~~~  295 (322)
                      +++++.+ +|+++|+||....    +.|.|.-.-  .......|..+.    ..+...+-+..+.-+|+||+++... ..
T Consensus       120 YpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~--~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~  192 (243)
T PF07250_consen  120 YPTATTLPDGRVLIVGGSNNP----TYEFWPPKG--PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SI  192 (243)
T ss_pred             cccceECCCCCEEEEeCcCCC----cccccCCcc--CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cE
Confidence            9988765 6789999998632    122221000  000111222222    2334444445666799999999864 33


Q ss_pred             CCCCCCC
Q 020682          296 MAKPGSP  302 (322)
Q Consensus       296 ~~~p~~~  302 (322)
                      .+|+...
T Consensus       193 i~d~~~n  199 (243)
T PF07250_consen  193 IYDYKTN  199 (243)
T ss_pred             EEeCCCC
Confidence            4455543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.63  E-value=0.0034  Score=55.19  Aligned_cols=136  Identities=13%  Similarity=0.118  Sum_probs=79.2

Q ss_pred             eeEEEECCCCceEECCCCCCCC---CCceeEEEEe---CC-EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCC
Q 020682          146 HVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD---GR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP  218 (322)
Q Consensus       146 ~v~~yd~~~~~W~~~~~~~~p~---~r~~~~~~~~---~~-~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~  218 (322)
                      .+.++||.|.+|..+++.+.+.   .+...+....   ++ ||..+....+..   ....+++|+..++.|+.+...+..
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~Vys~~~~~Wr~~~~~~~~   91 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQVYTLGSNSWRTIECSPPH   91 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEEEEEeCCCCccccccCCCC
Confidence            5899999999999997654310   1111222221   12 455554322111   136789999999999998743321


Q ss_pred             -CCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCc----CceeEEEECCEEEEEecC
Q 020682          219 -RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----PHRACFVFNDRLFVVGGQ  291 (322)
Q Consensus       219 -r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~lyv~GG~  291 (322)
                       ......+.++|.||-+.-.........+-.||       ..+++|....++|...    ....++.++|+|.++...
T Consensus        92 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFD-------l~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~  162 (230)
T TIGR01640        92 HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFD-------VSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQK  162 (230)
T ss_pred             ccccCCeEEECCEEEEEEEECCCCCcEEEEEEE-------cccceEeeeeecCccccccccceEEEEECCEEEEEEec
Confidence             11222677899999887533211111233333       4588898533444332    234678889999988764

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.40  E-value=0.0028  Score=56.21  Aligned_cols=148  Identities=13%  Similarity=0.130  Sum_probs=87.9

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCC----CceEECC-CCCCCCCCcee
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRF-DMPKDMAHSHL  172 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~p~~r~~~  172 (322)
                      .-..||+.+++++.+.-..-.-+...+..-++++.+.||.....   ..+-.|++.+    ..|.+.. .|..  +|-..
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~~~~m~~--~RWYp  121 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTESPNDMQS--GRWYP  121 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceECcccccC--CCccc
Confidence            45678999999987643222222222222378999999975422   2467788875    6798875 4777  67777


Q ss_pred             EEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC-----CcEEEcCC----CCCCCCCcEEEEECCEEEEEeccCCCCC
Q 020682          173 GVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET-----RKWDSIPP----LPSPRYSPATQLWRGRLHVMGGSKENRH  242 (322)
Q Consensus       173 ~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t-----~~W~~~~~----~p~~r~~~~~~~~~~~Lyv~GG~~~~~~  242 (322)
                      ++..+ +++++|+||....       ..+.+....     ..|..+..    .+..-+=+....-+|+||+++...    
T Consensus       122 T~~~L~DG~vlIvGG~~~~-------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~----  190 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNP-------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG----  190 (243)
T ss_pred             cceECCCCCEEEEeCcCCC-------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC----
Confidence            77776 8899999998632       223333321     12322221    222333334455688999998853    


Q ss_pred             CCCcceEeeeeeccccccCce-EeccCCCC
Q 020682          243 TPGLEHWSIAVKDGKALEKAW-RTEIPIPR  271 (322)
Q Consensus       243 ~~~~~~~~~~v~~~~~~~~~W-~~~~~~p~  271 (322)
                         ...||       +.++++ ..++++|.
T Consensus       191 ---s~i~d-------~~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  191 ---SIIYD-------YKTNTVVRTLPDLPG  210 (243)
T ss_pred             ---cEEEe-------CCCCeEEeeCCCCCC
Confidence               22233       336666 56666663

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.98  E-value=0.019  Score=53.78  Aligned_cols=113  Identities=13%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCc----ceeEEE--E--------CCCCceEECCCC
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDVY--N--------FTDNKWVDRFDM  163 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y--d--------~~~~~W~~~~~~  163 (322)
                      ....||..+..-..+|.++.+.....++.++++||++..........    ..++++  +        .....|+.+++.
T Consensus        87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P  166 (342)
T PF07893_consen   87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP  166 (342)
T ss_pred             CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence            36788998888888888888777778888899999998763332110    034444  4        233468887765


Q ss_pred             CCCCCCc-----eeEEEEe-CCEEEE-EecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCC
Q 020682          164 PKDMAHS-----HLGVVSD-GRYIYI-VSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP  218 (322)
Q Consensus       164 ~~p~~r~-----~~~~~~~-~~~Iyv-~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~  218 (322)
                      |-.....     -.+-+++ +..||| .-|..        .-.+.||+.+.+|+++....-|
T Consensus       167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LP  220 (342)
T PF07893_consen  167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLP  220 (342)
T ss_pred             CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecC
Confidence            5421111     2344445 788998 43321        2478999999999999754333

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=96.98  E-value=0.07  Score=47.85  Aligned_cols=126  Identities=12%  Similarity=0.116  Sum_probs=72.7

Q ss_pred             CCCCCCCCcccEEEEE---C-CEEEEEeecCCC-------C------CCcceeEEEECCCCceEE--CCCCCCCCCCcee
Q 020682          112 MPSAPVPRLDGAAIQI---K-NLFYVFAGYGSL-------D------YVHSHVDVYNFTDNKWVD--RFDMPKDMAHSHL  172 (322)
Q Consensus       112 ~~~~p~~r~~~~~~~~---~-~~lyv~GG~~~~-------~------~~~~~v~~yd~~~~~W~~--~~~~~~p~~r~~~  172 (322)
                      +.+.|.+|.+|++.++   | .-..+|||..-.       +      .....|+..|++-...+.  ++.+..  .-+.|
T Consensus        81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~d--G~SFH  158 (337)
T PF03089_consen   81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQD--GQSFH  158 (337)
T ss_pred             cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcC--CeEEE
Confidence            4678999999999766   2 236778987210       0      122357777887665543  455555  67888


Q ss_pred             EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC---CcEEEcCCCCCCCCCcEEE--EE-CCEEEEEeccCCC
Q 020682          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET---RKWDSIPPLPSPRYSPATQ--LW-RGRLHVMGGSKEN  240 (322)
Q Consensus       173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t---~~W~~~~~~p~~r~~~~~~--~~-~~~Lyv~GG~~~~  240 (322)
                      .+..-++.+|++||..-..... ...++....+-   .-...-.-++...+-.++.  .. .++.+|+||+...
T Consensus       159 vslar~D~VYilGGHsl~sd~R-pp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd  231 (337)
T PF03089_consen  159 VSLARNDCVYILGGHSLESDSR-PPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD  231 (337)
T ss_pred             EEEecCceEEEEccEEccCCCC-CCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence            8888899999999986433211 23444443221   1111111233333322222  22 3568889998643

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.95  E-value=0.09  Score=49.33  Aligned_cols=124  Identities=23%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             EEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeee
Q 020682          175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (322)
Q Consensus       175 ~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~  254 (322)
                      +..+++|+.++..         ..+.+||++|..=..+|.|+.+.....++.++++||++..............-.+++.
T Consensus        73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence            3358999998653         4478999999998888888888778888889999999987643321111110034444


Q ss_pred             ccc--------cccCceEeccCCCCCcC-------ceeEEEE-CCEEEE-EecC-CCCCCCCCCCCeeeee
Q 020682          255 DGK--------ALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFV-VGGQ-EGDFMAKPGSPIFKCS  307 (322)
Q Consensus       255 ~~~--------~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~lyv-~GG~-~~~~~~~p~~~~~~~~  307 (322)
                      .|+        ...-.|..+++.|-...       -.+-+++ +..|+| +-|. .|.+.|+..+..|.++
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence            443        23446777766542221       1234555 777888 5543 2556666666644433

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.35  E-value=0.072  Score=48.44  Aligned_cols=120  Identities=14%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             EEEEeecCCCCC-CcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCc
Q 020682          131 FYVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK  208 (322)
Q Consensus       131 lyv~GG~~~~~~-~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~  208 (322)
                      |||-|-+...+. ....+-.||+++.+|..+..-..  . .-.++... ++++|+.|-..-...  ....+-.||.++.+
T Consensus         1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~--G-~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~   75 (281)
T PF12768_consen    1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS--G-TVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQT   75 (281)
T ss_pred             CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce--E-EEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCe
Confidence            355555555443 23468889999999998765432  2 22334433 788888875543331  14778899999999


Q ss_pred             EEEcCCC-----CCCCCCcEEEEE---CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccC
Q 020682          209 WDSIPPL-----PSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP  268 (322)
Q Consensus       209 W~~~~~~-----p~~r~~~~~~~~---~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~  268 (322)
                      |..++..     |.+.  .+....   .+++++.|....  -..-+..||         ..+|..+..
T Consensus        76 w~~~~~~~s~~ipgpv--~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d---------Gs~W~~i~~  130 (281)
T PF12768_consen   76 WSSLGGGSSNSIPGPV--TALTFISNDGSNFWVAGRSAN--GSTFLMKYD---------GSSWSSIGS  130 (281)
T ss_pred             eeecCCcccccCCCcE--EEEEeeccCCceEEEeceecC--CCceEEEEc---------CCceEeccc
Confidence            9998752     3332  122221   235777766421  122344554         678887654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.63  E-value=1.3  Score=38.32  Aligned_cols=161  Identities=20%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             hccccccCCC--CEEECCCCCCCCcccE--EEEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCCCCCce
Q 020682           98 TFADLPAPDL--EWEQMPSAPVPRLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSH  171 (322)
Q Consensus        98 ~~~~yd~~~~--~W~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p~~r~~  171 (322)
                      .+..+|+.+.  .|+.-  +..+.....  .+..++.+|+..+.       ..++++|+.+.+  |+.-.  +.   +..
T Consensus         4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~--~~---~~~   69 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDL--PG---PIS   69 (238)
T ss_dssp             EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEEC--SS---CGG
T ss_pred             EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeec--cc---ccc
Confidence            3556666544  47652  211233333  34478999998432       469999986654  76643  32   111


Q ss_pred             eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EE-EcCCCCC--CCCCcEEEEECCEEEEEeccCCCCCCCCc
Q 020682          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WD-SIPPLPS--PRYSPATQLWRGRLHVMGGSKENRHTPGL  246 (322)
Q Consensus       172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~-~~~~~p~--~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~  246 (322)
                      ....+.++.||+..+         -..+..+|.++.+  |+ .....+.  .+......+.++.+|+...      ...+
T Consensus        70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l  134 (238)
T PF13360_consen   70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKL  134 (238)
T ss_dssp             SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEE
T ss_pred             ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcE
Confidence            224778999998763         2588999987765  98 4543232  2334445556777776653      1124


Q ss_pred             ceEeeeeeccccccCceEeccCCCCCcC--------ceeEEEECCEEEEEecCC
Q 020682          247 EHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQE  292 (322)
Q Consensus       247 ~~~~~~v~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~lyv~GG~~  292 (322)
                      ..++++     ..+..|+.....++...        ....+..++.+|+..+..
T Consensus       135 ~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g  183 (238)
T PF13360_consen  135 VALDPK-----TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG  183 (238)
T ss_dssp             EEEETT-----TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred             EEEecC-----CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence            444422     33556777555544322        123444567888887655

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.10  E-value=2.1  Score=40.70  Aligned_cols=117  Identities=18%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             hccccccCCC--CEEECCCCC--------CCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCC
Q 020682           98 TFADLPAPDL--EWEQMPSAP--------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK  165 (322)
Q Consensus        98 ~~~~yd~~~~--~W~~~~~~p--------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~  165 (322)
                      .+..+|..+.  .|+.-..-.        .++.....+..+++||+.+..       ..++++|.++-  .|+.-.+  .
T Consensus        80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~--~  150 (394)
T PRK11138         80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKVA--G  150 (394)
T ss_pred             eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccCC--C
Confidence            4677887654  687542210        112233456678999975431       35899998754  5876322  1


Q ss_pred             CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCC--CCCCcEEEEECCEEEEEe
Q 020682          166 DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMG  235 (322)
Q Consensus       166 p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~Lyv~G  235 (322)
                      +   ...+-++.++.+|+..+         ...++.+|+++.+  |+.-...|.  .+...+-++.++.+|+..
T Consensus       151 ~---~~ssP~v~~~~v~v~~~---------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~  212 (394)
T PRK11138        151 E---ALSRPVVSDGLVLVHTS---------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGG  212 (394)
T ss_pred             c---eecCCEEECCEEEEECC---------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEc
Confidence            1   12233556888888543         2578999998876  876543222  122233345677776643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.98  E-value=0.88  Score=43.32  Aligned_cols=137  Identities=16%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCC------CCCCceeEEEEeCCEEEEEecccCCCCCCC
Q 020682          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPK------DMAHSHLGVVSDGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~------p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~  195 (322)
                      -++.+++||+....       ..+++||.++.  .|+.-..-..      +.++...+.++.+++||+.+.         
T Consensus        65 Pvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------  128 (394)
T PRK11138         65 PAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------  128 (394)
T ss_pred             cEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---------
Confidence            35679999998653       25888998744  4876322110      002333456778999997432         


Q ss_pred             CceEEEEeCCCCc--EEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCC-
Q 020682          196 TSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRG-  272 (322)
Q Consensus       196 ~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~-  272 (322)
                      ...++.+|.+|.+  |+.-.+-  + ...+-++.++.+|+..+.      ..+..+|.+     ..+..|+.....|.. 
T Consensus       129 ~g~l~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~~------g~l~ald~~-----tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        129 KGQVYALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTSN------GMLQALNES-----DGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECCC------CEEEEEEcc-----CCCEeeeecCCCCccc
Confidence            2578999988764  8754321  1 112234568888875432      124444432     334558775433311 


Q ss_pred             -cCceeEEEECCEEEEEec
Q 020682          273 -GPHRACFVFNDRLFVVGG  290 (322)
Q Consensus       273 -~~~~~~~~~~~~lyv~GG  290 (322)
                       +...+-++.++.+|+..+
T Consensus       195 ~~~~~sP~v~~~~v~~~~~  213 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGD  213 (394)
T ss_pred             ccCCCCCEEECCEEEEEcC
Confidence             111133445666655443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.24  E-value=3  Score=40.33  Aligned_cols=104  Identities=9%  Similarity=-0.002  Sum_probs=56.2

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+-+.+...+..........-+++|++....++.    .+++++|+.+.+-+++.....  .....+....
T Consensus       229 ~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~spD  302 (433)
T PRK04922        229 AIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNHFG--IDTEPTWAPD  302 (433)
T ss_pred             EEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCC----ceEEEEECCCCCeEECccCCC--CccceEECCC
Confidence            3566677666666665544322222222234566554433322    369999999887766654322  1112222223


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  213 (322)
                      +.+|+......+      ...++.+|..++..+++.
T Consensus       303 G~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        303 GKSIYFTSDRGG------RPQIYRVAASGGSAERLT  332 (433)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence            445555433221      257899999888888775

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.90  E-value=4.9  Score=38.58  Aligned_cols=104  Identities=11%  Similarity=0.039  Sum_probs=56.6

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+-+.+...+..-.......-+++|++....++.    .+++++|..+...+++.....  .-........
T Consensus       224 ~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~--~~~~~~~spD  297 (430)
T PRK00178        224 RIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGN----PEIYVMDLASRQLSRVTNHPA--IDTEPFWGKD  297 (430)
T ss_pred             EEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCC----ceEEEEECCCCCeEEcccCCC--CcCCeEECCC
Confidence            4566676666666655433211111222224556544332222    469999999998887765332  1111222223


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  213 (322)
                      +++|+......+      ...++.+|..+++++++.
T Consensus       298 g~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt  327 (430)
T PRK00178        298 GRTLYFTSDRGG------KPQIYKVNVNGGRAERVT  327 (430)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence            456665532211      257899999999888875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.80  E-value=4  Score=35.23  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=86.3

Q ss_pred             hhccccccCCC--CEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceE-ECCCCCCCCCCce
Q 020682           97 ATFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWV-DRFDMPKDMAHSH  171 (322)
Q Consensus        97 ~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~-~~~~~~~p~~r~~  171 (322)
                      ..+..+|..+.  .|+.-.  +.+-... ....++.||+..+.       ..++.+|.++.  .|+ .....+....+..
T Consensus        46 ~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~  115 (238)
T PF13360_consen   46 GNLYALDAKTGKVLWRFDL--PGPISGA-PVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSS  115 (238)
T ss_dssp             SEEEEEETTTSEEEEEEEC--SSCGGSG-EEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--
T ss_pred             CEEEEEECCCCCEEEEeec--cccccce-eeecccccccccce-------eeeEecccCCcceeeeeccccccccccccc
Confidence            35778887665  466543  2221222 46778999888732       25899997654  498 4433222112345


Q ss_pred             eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCCCCC--------CcEEEEECCEEEEEeccCCCC
Q 020682          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRY--------SPATQLWRGRLHVMGGSKENR  241 (322)
Q Consensus       172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~~~Lyv~GG~~~~~  241 (322)
                      ....+.++.+|+...         ...+..+|+++++  |+.-...+..-.        ....+..++.+|+..+...  
T Consensus       116 ~~~~~~~~~~~~~~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~--  184 (238)
T PF13360_consen  116 SSPAVDGDRLYVGTS---------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR--  184 (238)
T ss_dssp             SEEEEETTEEEEEET---------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS--
T ss_pred             cCceEecCEEEEEec---------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe--
Confidence            556666888887654         2788999999875  776544333111        1233444678888766431  


Q ss_pred             CCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEe
Q 020682          242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG  289 (322)
Q Consensus       242 ~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~G  289 (322)
                          +-..++     ......|+..  +. ... ......++.||+..
T Consensus       185 ----~~~~d~-----~tg~~~w~~~--~~-~~~-~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  185 ----VVAVDL-----ATGEKLWSKP--IS-GIY-SLPSVDGGTLYVTS  219 (238)
T ss_dssp             ----EEEEET-----TTTEEEEEEC--SS--EC-ECEECCCTEEEEEE
T ss_pred             ----EEEEEC-----CCCCEEEEec--CC-Ccc-CCceeeCCEEEEEe
Confidence                222232     2222338443  11 111 12556677787777

...

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.60  E-value=0.69  Score=42.09  Aligned_cols=111  Identities=14%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEE-ECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC---CCCCCce
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP---KDMAHSH  171 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~p~~r~~  171 (322)
                      ...+..||....+|..+..--... -..+.- -+++||+.|-....+.-...+-.||.++.+|..+....   .|.+-..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence            346889999999999876531111 112222 27888888876444422345889999999998876621   1112221


Q ss_pred             eEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682          172 LGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (322)
Q Consensus       172 ~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  214 (322)
                      ..... ..+.+++.|.. ...    ..-+..||  -.+|+.+..
T Consensus        94 ~~~~~~d~~~~~~aG~~-~~g----~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRS-ANG----STFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             EEeeccCCceEEEecee-cCC----CceEEEEc--CCceEeccc
Confidence            12121 24578887765 221    35666775  558998864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=92.84  E-value=6.4  Score=38.27  Aligned_cols=104  Identities=9%  Similarity=0.000  Sum_probs=58.3

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+-+.+...+..........-++.|++....++.    .+++.+|.++.+.+++.....  .....+....
T Consensus       243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~----~~Iy~~dl~tg~~~~lt~~~~--~~~~p~wSpD  316 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQ----PEIYVVDIATKALTRITRHRA--IDTEPSWHPD  316 (448)
T ss_pred             EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCC----eEEEEEECCCCCeEECccCCC--CccceEECCC
Confidence            4666677666655555443222222222335566665443322    369999999988887755322  1111222223


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  213 (322)
                      +.+|++.....+      ...++.+|..+++++++.
T Consensus       317 G~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        317 GKSLIFTSERGG------KPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence            455655442211      268999999999998874

>smart00284 OLF Olfactomedin-like domains

Probab=92.79  E-value=1.9  Score=38.58  Aligned_cols=141  Identities=17%  Similarity=0.220  Sum_probs=76.5

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEEC----CCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEe
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNF----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD  203 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd  203 (322)
                      .+++|++.+.+...   +.++.|..    ....+...-.+|.  +-.+.+.++.++.+|.--..        ...+..||
T Consensus        34 ~~~~wv~~~~~~~~---~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~~--------s~~iiKyd  100 (255)
T smart00284       34 KSLYWYMPLNTRVL---RSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKFN--------SHDICRFD  100 (255)
T ss_pred             CceEEEEccccCCC---cEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEecC--------CccEEEEE
Confidence            47888886653111   23555532    2333333334555  56778889999999984331        47899999


Q ss_pred             CCCCcEEEcCCCCCCC----C-----C---cEEEEECCEEEEE---eccCCCCCCCCcceEeeeeeccccccCceEeccC
Q 020682          204 SETRKWDSIPPLPSPR----Y-----S---PATQLWRGRLHVM---GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP  268 (322)
Q Consensus       204 ~~t~~W~~~~~~p~~r----~-----~---~~~~~~~~~Lyv~---GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~  268 (322)
                      +.+.+=.....+|.+.    .     +   .-.++..+-|+|+   ....+......++-.++++      ...|..  +
T Consensus       101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~v------e~tW~T--~  172 (255)
T smart00284      101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTI------ENTWIT--T  172 (255)
T ss_pred             CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceE------EEEEEc--C
Confidence            9998865444344321    1     1   2233444556665   2222221212222222221      456766  4


Q ss_pred             CCCCcCceeEEEECCEEEEEec
Q 020682          269 IPRGGPHRACFVFNDRLFVVGG  290 (322)
Q Consensus       269 ~p~~~~~~~~~~~~~~lyv~GG  290 (322)
                      .++...+ .+.++-|.||++-.
T Consensus       173 ~~k~sa~-naFmvCGvLY~~~s  193 (255)
T smart00284      173 YNKRSAS-NAFMICGILYVTRS  193 (255)
T ss_pred             CCccccc-ccEEEeeEEEEEcc
Confidence            4444443 56677789999963

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.69  E-value=2.1  Score=33.89  Aligned_cols=82  Identities=13%  Similarity=0.276  Sum_probs=55.4

Q ss_pred             EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      ..||-+|-..-.....    ...+..||.++.+|+.++.   .........++.++|+|-++.-..... ...++.|-++
T Consensus         3 cinGvly~~a~~~~~~----~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe   77 (129)
T PF08268_consen    3 CINGVLYWLAWSEDSD----NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE   77 (129)
T ss_pred             EECcEEEeEEEECCCC----CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence            3567677665541111    4789999999999998853   234566778889999998875543222 3457777755


Q ss_pred             eeccccccCceEec
Q 020682          253 VKDGKALEKAWRTE  266 (322)
Q Consensus       253 v~~~~~~~~~W~~~  266 (322)
                        |++  +.+|++.
T Consensus        78 --D~~--k~~Wsk~   87 (129)
T PF08268_consen   78 --DYE--KQEWSKK   87 (129)
T ss_pred             --ccc--cceEEEE
Confidence              443  7899975

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=92.53  E-value=11  Score=36.51  Aligned_cols=171  Identities=9%  Similarity=-0.001  Sum_probs=79.0

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+-+.+...+..-.......-+.+|++.....+.    .+++.+|.++.+.+++.....  .-......-.
T Consensus       224 ~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~----~~I~~~d~~tg~~~~lt~~~~--~~~~~~wSPD  297 (429)
T PRK03629        224 ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDGRS--NNTEPTWFPD  297 (429)
T ss_pred             EEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEccCCCC--CcCceEECCC
Confidence            3445555555545554443221122222224556555332221    258999999888777654432  1111121222


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCE-EEEEeccCCCCCCCCcceEeeeeecc
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGR-LHVMGGSKENRHTPGLEHWSIAVKDG  256 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~-Lyv~GG~~~~~~~~~~~~~~~~v~~~  256 (322)
                      ++.|+......+      ...++.+|+.+..-+++..... ........-+|+ |+..+...+   ...+..++      
T Consensus       298 G~~I~f~s~~~g------~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~d------  361 (429)
T PRK03629        298 SQNLAYTSDQAG------RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQD------  361 (429)
T ss_pred             CCEEEEEeCCCC------CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEE------
Confidence            444544332211      2588899998887776643211 111222233454 444433222   11233333      


Q ss_pred             ccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC
Q 020682          257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG  293 (322)
Q Consensus       257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~  293 (322)
                       ..++.++.+..... ... ....-+++.+++.+.++
T Consensus       362 -l~~g~~~~Lt~~~~-~~~-p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        362 -LATGGVQVLTDTFL-DET-PSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             -CCCCCeEEeCCCCC-CCC-ceECCCCCEEEEEEcCC
Confidence             34677776653221 111 22335666666665543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.46  E-value=2.6  Score=38.81  Aligned_cols=143  Identities=11%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             CEEEEEeec-C--CCCCCc-ceeEEEECCCC-----ceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceE
Q 020682          129 NLFYVFAGY-G--SLDYVH-SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT  199 (322)
Q Consensus       129 ~~lyv~GG~-~--~~~~~~-~~v~~yd~~~~-----~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v  199 (322)
                      ...+++|.. .  +..... ..+.+|+..+.     +.+.+.....  .-.-.+++..+++|.+.-|          ..+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g----------~~l  109 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVG----------NKL  109 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEET----------TEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeec----------CEE
Confidence            456666654 1  112122 56899999885     5555544433  2235677778998776665          678


Q ss_pred             EEEeCCCCc-EEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeE
Q 020682          200 FVLDSETRK-WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC  278 (322)
Q Consensus       200 ~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~  278 (322)
                      ..|+...+. +.+.+.+..+-....+.+.++.|++- -.     ..++..+.     |+.+..+-..++.-+..+.-.++
T Consensus       110 ~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vg-D~-----~~sv~~~~-----~~~~~~~l~~va~d~~~~~v~~~  178 (321)
T PF03178_consen  110 YVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVG-DA-----MKSVSLLR-----YDEENNKLILVARDYQPRWVTAA  178 (321)
T ss_dssp             EEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEE-ES-----SSSEEEEE-----EETTTE-EEEEEEESS-BEEEEE
T ss_pred             EEEEccCcccchhhheecceEEEEEEeccccEEEEE-Ec-----ccCEEEEE-----EEccCCEEEEEEecCCCccEEEE
Confidence            888888888 88888766665667777888866643 32     12233332     22333444555443333333355


Q ss_pred             EEE-CCEEEEEecCCCC
Q 020682          279 FVF-NDRLFVVGGQEGD  294 (322)
Q Consensus       279 ~~~-~~~lyv~GG~~~~  294 (322)
                      ..+ ++..++++-..+.
T Consensus       179 ~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  179 EFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             EEE-SSSEEEEEETTSE
T ss_pred             EEecCCcEEEEEcCCCe
Confidence            555 5555555544444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.28  E-value=6.3  Score=37.04  Aligned_cols=132  Identities=14%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             ECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeC
Q 020682          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (322)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~  204 (322)
                      .++.+|+..+.       ..++.+|+++.  .|+.-...+....+...+.++.++.+|+ |..        ...+..+|+
T Consensus       144 ~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~--------~g~v~ald~  207 (377)
T TIGR03300       144 ANGLVVVRTND-------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA--------GGKLVALDL  207 (377)
T ss_pred             ECCEEEEECCC-------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC--------CCEEEEEEc
Confidence            45666664321       35888998754  4875432221001222344556676654 321        257889998


Q ss_pred             CCCc--EEEcCCCCCCC--------CCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcC
Q 020682          205 ETRK--WDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP  274 (322)
Q Consensus       205 ~t~~--W~~~~~~p~~r--------~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~  274 (322)
                      ++.+  |+.--..+...        .....++.++.+|+.+..      ..+.+++.+     ..+..|+....   .. 
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~-----tG~~~W~~~~~---~~-  272 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLR-----SGRVLWKRDAS---SY-  272 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECC-----CCcEEEeeccC---Cc-
Confidence            8764  86532222111        122334567888875432      125555532     33455866421   11 


Q ss_pred             ceeEEEECCEEEEEec
Q 020682          275 HRACFVFNDRLFVVGG  290 (322)
Q Consensus       275 ~~~~~~~~~~lyv~GG  290 (322)
                       ...++.++++|+...
T Consensus       273 -~~p~~~~~~vyv~~~  287 (377)
T TIGR03300       273 -QGPAVDDNRLYVTDA  287 (377)
T ss_pred             -cCceEeCCEEEEECC
Confidence             134456777877653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=92.10  E-value=2.2  Score=40.81  Aligned_cols=154  Identities=14%  Similarity=0.113  Sum_probs=85.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ...|.+.+|.++.-    .++.-|-++|.  .+..+.- ..|-..+..+..|....+++|.        ..-++.||.++
T Consensus       224 ~~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~  289 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLET  289 (514)
T ss_pred             CCceEEEecCCCcE----EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence            45688888876543    36667777776  3333321 0122222333334436666664        35678999999


Q ss_pred             CcEEEcCCC---CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECC
Q 020682          207 RKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND  283 (322)
Q Consensus       207 ~~W~~~~~~---p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  283 (322)
                      .+-+++.++   +..-...-.+.-++.++++-|..+..     ...       ...+++|-.--.++..-...+...-+.
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I-----~lL-------hakT~eli~s~KieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI-----HLL-------HAKTKELITSFKIEGVVSDFTFSSDSK  357 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceE-----Eee-------hhhhhhhhheeeeccEEeeEEEecCCc
Confidence            998888654   21111222334455677777765531     111       134666654444443333333344456


Q ss_pred             EEEEEecCCCCCCCCCCCCeeeeeEe
Q 020682          284 RLFVVGGQEGDFMAKPGSPIFKCSRR  309 (322)
Q Consensus       284 ~lyv~GG~~~~~~~~p~~~~~~~~~~  309 (322)
                      +|++.||+....++|.+.+  .|.+|
T Consensus       358 ~l~~~~~~GeV~v~nl~~~--~~~~r  381 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQN--SCLHR  381 (514)
T ss_pred             EEEEEcCCceEEEEecCCc--ceEEE
Confidence            6888888776677777776  44443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.92  E-value=11  Score=35.37  Aligned_cols=117  Identities=19%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             eeEEEECCCC--ceEECCCCCCC---CC---CceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCC
Q 020682          146 HVDVYNFTDN--KWVDRFDMPKD---MA---HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPL  215 (322)
Q Consensus       146 ~v~~yd~~~~--~W~~~~~~~~p---~~---r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~  215 (322)
                      .+..+|+++.  .|+.-...+..   ..   ......++.++.||+...         ...+++||+++.+  |..-.  
T Consensus       201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---------~g~l~a~d~~tG~~~W~~~~--  269 (377)
T TIGR03300       201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---------QGRVAALDLRSGRVLWKRDA--  269 (377)
T ss_pred             EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---------CCEEEEEECCCCcEEEeecc--
Confidence            5788888754  48653222110   00   112234456888888653         2578899998764  76531  


Q ss_pred             CCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEe
Q 020682          216 PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG  289 (322)
Q Consensus       216 p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~G  289 (322)
                      +   .....++.+++||+...      ...+.+++..     ..+..|+... +... ...+.++.+++||+..
T Consensus       270 ~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~-----tG~~~W~~~~-~~~~-~~ssp~i~g~~l~~~~  327 (377)
T TIGR03300       270 S---SYQGPAVDDNRLYVTDA------DGVVVALDRR-----SGSELWKNDE-LKYR-QLTAPAVVGGYLVVGD  327 (377)
T ss_pred             C---CccCceEeCCEEEEECC------CCeEEEEECC-----CCcEEEcccc-ccCC-ccccCEEECCEEEEEe
Confidence            1   12234467888988642      1224455432     2344576522 1111 1113344566666543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.84  E-value=1.6  Score=39.26  Aligned_cols=112  Identities=19%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             ceeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcce
Q 020682          170 SHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH  248 (322)
Q Consensus       170 ~~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~  248 (322)
                      .--+..+ .++.+|.--|..+      .+.+..||++|++=....++|..-++=+++.++++||.+-=..     .....
T Consensus        46 FTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~  114 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGFV  114 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEEE
Confidence            4445555 6789999888765      3789999999999877778888888889999999999873221     12333


Q ss_pred             EeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       249 ~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                      ||         .+..+.+...+-...+-+.+.-+..|++--|.+.....+|..
T Consensus       115 yd---------~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  115 YD---------PNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             EE---------TTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred             Ec---------cccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcc
Confidence            44         233445444333345558888888899999988777788875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=91.66  E-value=12  Score=35.40  Aligned_cols=127  Identities=12%  Similarity=0.031  Sum_probs=64.5

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+-..+...+..........-+..|++....++.    .+++.+|..+...+.+.....  ..........
T Consensus       215 ~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~----~~i~~~d~~~~~~~~l~~~~~--~~~~~~~s~d  288 (417)
T TIGR02800       215 EIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGN----PDIYVMDLDGKQLTRLTNGPG--IDTEPSWSPD  288 (417)
T ss_pred             EEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCC----ccEEEEECCCCCEEECCCCCC--CCCCEEECCC
Confidence            4666777666555554433222222222224456655433222    368999999888777654432  1111122223


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS  237 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~  237 (322)
                      +.+|++.....+      ...++.+|..+..++++........ .....-+++.+++...
T Consensus       289 g~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~~~~-~~~~spdg~~i~~~~~  341 (417)
T TIGR02800       289 GKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGGYNA-SPSWSPDGDLIAFVHR  341 (417)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEeecCCCCcc-CeEECCCCCEEEEEEc
Confidence            455655443221      2589999999988887753221111 1122335555555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=90.12  E-value=15  Score=34.84  Aligned_cols=103  Identities=8%  Similarity=-0.021  Sum_probs=60.3

Q ss_pred             CCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC-------CCCCCCcEEEE
Q 020682          154 DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-------PSPRYSPATQL  226 (322)
Q Consensus       154 ~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-------p~~r~~~~~~~  226 (322)
                      .+.|+.+..+.    ...--++.++|++|++.-         ..+++.+|.+- .=.++.+.       ...+.....+.
T Consensus       189 ~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVE  254 (373)
T PLN03215        189 GNVLKALKQMG----YHFSDIIVHKGQTYALDS---------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVE  254 (373)
T ss_pred             CCeeeEccCCC----ceeeEEEEECCEEEEEcC---------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEE
Confidence            48999986433    345678889999999832         25566666421 11222211       11112334667


Q ss_pred             ECCEEEEEeccCCCCCC-------CCcceEeeeeeccccccCceEeccCCC
Q 020682          227 WRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPIP  270 (322)
Q Consensus       227 ~~~~Lyv~GG~~~~~~~-------~~~~~~~~~v~~~~~~~~~W~~~~~~p  270 (322)
                      ..|+|+++.........       .......++||..|.+..+|.++..+.
T Consensus       255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg  305 (373)
T PLN03215        255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG  305 (373)
T ss_pred             ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence            78999999875321100       011234566777778889999987654

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=89.47  E-value=4.3  Score=36.30  Aligned_cols=143  Identities=17%  Similarity=0.245  Sum_probs=78.2

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECC-----CCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEE
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL  202 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~-----~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~y  202 (322)
                      ++++|++.|..+.     .++.|.-.     .+.....-.+|.  +-.+.+.++.++.+|---.    .    .+.+..|
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~--~~~GtG~vVYngslYY~~~----~----s~~Ivky   94 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPY--PWQGTGHVVYNGSLYYNKY----N----SRNIVKY   94 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEec--eeccCCeEEECCcEEEEec----C----CceEEEE
Confidence            5789999886544     35555332     223333334444  4567778888888887433    1    5899999


Q ss_pred             eCCCCcEE---EcCCC------CCCCC---CcEEEEECCEEEEEeccCCC---CCCCCcceEeeeeeccccccCceEecc
Q 020682          203 DSETRKWD---SIPPL------PSPRY---SPATQLWRGRLHVMGGSKEN---RHTPGLEHWSIAVKDGKALEKAWRTEI  267 (322)
Q Consensus       203 d~~t~~W~---~~~~~------p~~r~---~~~~~~~~~~Lyv~GG~~~~---~~~~~~~~~~~~v~~~~~~~~~W~~~~  267 (322)
                      |+.+..=.   .++..      |-...   ..-.++..+-|+|+=.....   .....++.-+++      ....|... 
T Consensus        95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~------v~~tw~T~-  167 (250)
T PF02191_consen   95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLS------VEQTWNTS-  167 (250)
T ss_pred             ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCc------eEEEEEec-
Confidence            99988744   44421      11111   12234555557777433221   111112111221      15667653 


Q ss_pred             CCCCCcCceeEEEECCEEEEEecCCCC
Q 020682          268 PIPRGGPHRACFVFNDRLFVVGGQEGD  294 (322)
Q Consensus       268 ~~p~~~~~~~~~~~~~~lyv~GG~~~~  294 (322)
                       .++...+ .+.++-|.||++...+..
T Consensus       168 -~~k~~~~-naFmvCGvLY~~~s~~~~  192 (250)
T PF02191_consen  168 -YPKRSAG-NAFMVCGVLYATDSYDTR  192 (250)
T ss_pred             -cCchhhc-ceeeEeeEEEEEEECCCC
Confidence             4544444 466777899999887643

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.25  E-value=4.4  Score=36.41  Aligned_cols=99  Identities=19%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             EEEE-ECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020682          123 AAIQ-IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV  201 (322)
Q Consensus       123 ~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~  201 (322)
                      ++.. .++.+|.--|..+.    +.+.+||+++.+-....++|.  .-.+=++++.+++||..-=.        ....+.
T Consensus        49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk--------~~~~f~  114 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLTWK--------EGTGFV  114 (264)
T ss_dssp             EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEESS--------SSEEEE
T ss_pred             cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEEec--------CCeEEE
Confidence            4444 57899998886543    468899999988777677776  56788899999999998642        478899


Q ss_pred             EeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc
Q 020682          202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS  237 (322)
Q Consensus       202 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~  237 (322)
                      ||..+-  +.+...+.+..+-+++..+..|++--|.
T Consensus       115 yd~~tl--~~~~~~~y~~EGWGLt~dg~~Li~SDGS  148 (264)
T PF05096_consen  115 YDPNTL--KKIGTFPYPGEGWGLTSDGKRLIMSDGS  148 (264)
T ss_dssp             EETTTT--EEEEEEE-SSS--EEEECSSCEEEE-SS
T ss_pred             Eccccc--eEEEEEecCCcceEEEcCCCEEEEECCc
Confidence            999863  5555555566778888777788888775

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=89.19  E-value=16  Score=32.77  Aligned_cols=169  Identities=14%  Similarity=0.062  Sum_probs=76.6

Q ss_pred             ccEEEEECCEEEEEeecCCCCCCcc-eeEEEECC----CCce-EECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCC
Q 020682          121 DGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFT----DNKW-VDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRG  194 (322)
Q Consensus       121 ~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~----~~~W-~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~  194 (322)
                      -|+.+.+++.-|.+|=.++.-..+. -+..|...    ...- +.++.--.+ .-+-.++-..++++|+.--......  
T Consensus       138 ~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~-~AsEPCvkyY~g~LyLtTRgt~~~~--  214 (367)
T PF12217_consen  138 LHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYER-NASEPCVKYYDGVLYLTTRGTLPTN--  214 (367)
T ss_dssp             EEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-T-TEEEEEEEEETTEEEEEEEES-TTS--
T ss_pred             eeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhhcc-ccccchhhhhCCEEEEEEcCcCCCC--
Confidence            5788889988888885544332221 12222111    1111 222211111 3345566668999999864333322  


Q ss_pred             CCceEEEEeCCCCcEEEcCC-CCCCCCCcEEEEECCEEEEEeccCC----------CCCC---CCcceEeeeeecccccc
Q 020682          195 PTSRTFVLDSETRKWDSIPP-LPSPRYSPATQLWRGRLHVMGGSKE----------NRHT---PGLEHWSIAVKDGKALE  260 (322)
Q Consensus       195 ~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~~Lyv~GG~~~----------~~~~---~~~~~~~~~v~~~~~~~  260 (322)
                      +-+.+.+=+..-..|+.+.- -..-....-.+..++.||+||-...          .++.   +....-.+.+-+++++.
T Consensus       215 ~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~  294 (367)
T PF12217_consen  215 PGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDD  294 (367)
T ss_dssp             ---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT
T ss_pred             CcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccc
Confidence            13777788877888998742 1222333445678999999996421          1111   11222233455566778


Q ss_pred             CceEeccC------CCCCcCce-eEEEECCEEE-EEecCC
Q 020682          261 KAWRTEIP------IPRGGPHR-ACFVFNDRLF-VVGGQE  292 (322)
Q Consensus       261 ~~W~~~~~------~p~~~~~~-~~~~~~~~ly-v~GG~~  292 (322)
                      -+|..+..      +.....+. ++|+-++-|| +|||.+
T Consensus       295 ~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED  334 (367)
T PF12217_consen  295 VEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED  334 (367)
T ss_dssp             ---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred             eEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence            88877643      22233333 4456677765 788855

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=88.99  E-value=23  Score=34.37  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=39.1

Q ss_pred             ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (322)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  214 (322)
                      ..++++|+.+.+-+.+...+.  .-......-.+.+|++....++      ..+++.+|..+++.+++..
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~  303 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPG--INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR  303 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCC--CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence            469999998877666655543  1122222223556766543322      3689999999999888764

>cd00094 HX Hemopexin-like repeats

Probab=88.43  E-value=15  Score=31.30  Aligned_cols=96  Identities=15%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             EEEECCEEEEEeecCCCCCCcceeEEEECCCCce--EECCCC-CCCCCCceeEEEEeC-CEEEEEecccCCCCCCCCceE
Q 020682          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRFDM-PKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGPTSRT  199 (322)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~-~~p~~r~~~~~~~~~-~~Iyv~GG~~~~~~~~~~~~v  199 (322)
                      +....+++|+|-|        +.+|+++......  ..+... +..+....++....+ +++|+|-|          +..
T Consensus        12 ~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg----------~~y   73 (194)
T cd00094          12 VTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG----------DKY   73 (194)
T ss_pred             EEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC----------CEE
Confidence            3445699999988        3578887652211  112111 110022333333223 89999977          567


Q ss_pred             EEEeCCCCcEE---EcC--CCCC-CCCCcEEEEE--CCEEEEEecc
Q 020682          200 FVLDSETRKWD---SIP--PLPS-PRYSPATQLW--RGRLHVMGGS  237 (322)
Q Consensus       200 ~~yd~~t~~W~---~~~--~~p~-~r~~~~~~~~--~~~Lyv~GG~  237 (322)
                      ++||..+..+.   .+.  .+|. +..--++..+  ++++|+|.|.
T Consensus        74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~  119 (194)
T cd00094          74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD  119 (194)
T ss_pred             EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence            77876642221   111  1111 1111233344  5789999884

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=88.22  E-value=25  Score=33.81  Aligned_cols=121  Identities=12%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             eeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEE
Q 020682          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ  225 (322)
Q Consensus       146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~  225 (322)
                      ++|.+|..+...+.+.....  .-........+.+|+......+      ...++.+|..+..-+.+..   .... ...
T Consensus       273 ~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l~~---~~~~-~~~  340 (429)
T PRK01742        273 NIYVMGANGGTPSQLTSGAG--NNTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGGASLVGG---RGYS-AQI  340 (429)
T ss_pred             EEEEEECCCCCeEeeccCCC--CcCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEecC---CCCC-ccC
Confidence            58899998877766654322  1111222222445555443222      2577778776654444321   1111 122


Q ss_pred             EECCE-EEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC
Q 020682          226 LWRGR-LHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD  294 (322)
Q Consensus       226 ~~~~~-Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~  294 (322)
                      .-+|+ |++.++       ..+..|++       .+..++.+..-.. ... ....-+++++++++.++.
T Consensus       341 SpDG~~ia~~~~-------~~i~~~Dl-------~~g~~~~lt~~~~-~~~-~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        341 SADGKTLVMING-------DNVVKQDL-------TSGSTEVLSSTFL-DES-PSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             CCCCCEEEEEcC-------CCEEEEEC-------CCCCeEEecCCCC-CCC-ceECCCCCEEEEEEcCCC
Confidence            22444 544433       12444543       3666665432111 111 223446777777665543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=88.18  E-value=26  Score=33.79  Aligned_cols=104  Identities=11%  Similarity=-0.019  Sum_probs=51.4

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+=..+...+..........-+++|++....++.    .++|.+|..+...+++.....  ........-.
T Consensus       221 ~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~--~~~~~~wSpD  294 (427)
T PRK02889        221 VVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGN----SQIYTVNADGSGLRRLTQSSG--IDTEPFFSPD  294 (427)
T ss_pred             EEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCC----ceEEEEECCCCCcEECCCCCC--CCcCeEEcCC
Confidence            3566666555444443333111111111224456554443322    468999988777666644221  1122222223


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  213 (322)
                      +.+|+......+      ...++.+|..+...+++.
T Consensus       295 G~~l~f~s~~~g------~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        295 GRSIYFTSDRGG------APQIYRMPASGGAAQRVT  324 (427)
T ss_pred             CCEEEEEecCCC------CcEEEEEECCCCceEEEe
Confidence            455655432211      257888898887777764

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=86.06  E-value=11  Score=29.66  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=55.2

Q ss_pred             EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC-CCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEE-e
Q 020682          126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D  203 (322)
Q Consensus       126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~y-d  203 (322)
                      .++|-+|-.+-.  .......+..||.++++|+.+..+ ...........+.++|+|-++.-.....  ...-++|++ |
T Consensus         3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD   78 (129)
T PF08268_consen    3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED   78 (129)
T ss_pred             EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence            457788877765  222234689999999999886543 1112456677788899998876543322  113678887 4


Q ss_pred             CCCCcEEEcC
Q 020682          204 SETRKWDSIP  213 (322)
Q Consensus       204 ~~t~~W~~~~  213 (322)
                      .++.+|.+..
T Consensus        79 ~~k~~Wsk~~   88 (129)
T PF08268_consen   79 YEKQEWSKKH   88 (129)
T ss_pred             cccceEEEEE
Confidence            6677899763

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=85.94  E-value=24  Score=31.07  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=36.7

Q ss_pred             EEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      .+|+.++.+      ..+.+||+.+.+-........ .++   +++..  ++.+|+.++.        ...+..||..+.
T Consensus         2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~-~~~---~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~   63 (300)
T TIGR03866         2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQ-RPR---GITLSKDGKLLYVCASD--------SDTIQVIDLATG   63 (300)
T ss_pred             cEEEEecCC------CEEEEEECCCCceEEEEECCC-CCC---ceEECCCCCEEEEEECC--------CCeEEEEECCCC
Confidence            567776643      258888988765433222211 022   23332  4467777653        257888999887


Q ss_pred             cEEE
Q 020682          208 KWDS  211 (322)
Q Consensus       208 ~W~~  211 (322)
                      +...
T Consensus        64 ~~~~   67 (300)
T TIGR03866        64 EVIG   67 (300)
T ss_pred             cEEE
Confidence            7654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=85.44  E-value=19  Score=31.50  Aligned_cols=182  Identities=15%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC---CCCCcee
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHL  172 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---p~~r~~~  172 (322)
                      .++.+++.+.+-..+. .+.   -.+++..  ++++|+....        ...++|+.+.+++.+...+.   +..+.+-
T Consensus        23 ~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND   90 (246)
T PF08450_consen   23 RIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPND   90 (246)
T ss_dssp             EEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEEE
T ss_pred             EEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCce
Confidence            5667777666443321 122   2233333  6888888652        35667999999988766531   2234444


Q ss_pred             EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEE-CC-EEEEEeccCCCCCCCCcceE
Q 020682          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPGLEHW  249 (322)
Q Consensus       173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~  249 (322)
                      .++--++.||+-.-............++++++. .+...+. .+..+   -.++.- ++ .||+.--.     ...+..|
T Consensus        91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-----~~~i~~~  161 (246)
T PF08450_consen   91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-----NGRIWRF  161 (246)
T ss_dssp             EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-----TTEEEEE
T ss_pred             EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccc-----cceeEEE
Confidence            444447888885432222111101679999999 6666553 22222   133332 34 57774222     2235555


Q ss_pred             eeeeeccccccCceEe---ccCCCCCc-CceeEEE-ECCEEEEEec-CCCCCCCCCCCCeee
Q 020682          250 SIAVKDGKALEKAWRT---EIPIPRGG-PHRACFV-FNDRLFVVGG-QEGDFMAKPGSPIFK  305 (322)
Q Consensus       250 ~~~v~~~~~~~~~W~~---~~~~p~~~-~~~~~~~-~~~~lyv~GG-~~~~~~~~p~~~~~~  305 (322)
                      +++     .....+..   +..++... .-.++++ -++.||+..- .....+++|.-....
T Consensus       162 ~~~-----~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~  218 (246)
T PF08450_consen  162 DLD-----ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR  218 (246)
T ss_dssp             EEE-----TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred             ecc-----ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence            543     22333332   22223221 1123333 3678888743 233445666654433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK05137 tolB translocation protein TolB; Provisional

Probab=85.43  E-value=36  Score=32.77  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=59.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|..+.+.+.+...+..-.......-+.+|++....++.    .++|++|.++..-+++...+.  .-........
T Consensus       227 ~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~----~~Iy~~d~~~~~~~~Lt~~~~--~~~~~~~spD  300 (435)
T PRK05137        227 RVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGN----TDIYTMDLRSGTTTRLTDSPA--IDTSPSYSPD  300 (435)
T ss_pred             EEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCC----ceEEEEECCCCceEEccCCCC--ccCceeEcCC
Confidence            5677777777777766554332233333335556554443322    469999999888777655432  1111222223


Q ss_pred             CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682          178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (322)
Q Consensus       178 ~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  214 (322)
                      +.+|+......+      ...++.+|..+...+++..
T Consensus       301 G~~i~f~s~~~g------~~~Iy~~d~~g~~~~~lt~  331 (435)
T PRK05137        301 GSQIVFESDRSG------SPQLYVMNADGSNPRRISF  331 (435)
T ss_pred             CCEEEEEECCCC------CCeEEEEECCCCCeEEeec
Confidence            445554332111      2578999998888777753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.68  E-value=25  Score=35.01  Aligned_cols=95  Identities=19%  Similarity=0.327  Sum_probs=55.1

Q ss_pred             EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCC-C-----CceeEEEEeCCEEEEEecccCCCCCCC
Q 020682          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM-A-----HSHLGVVSDGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~-~-----r~~~~~~~~~~~Iyv~GG~~~~~~~~~  195 (322)
                      -++.++.||+....       ..++.+|.++-  .|+.-...+... +     ....+.++.+++||+...         
T Consensus        65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---------  128 (527)
T TIGR03075        65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---------  128 (527)
T ss_pred             CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence            35668999996542       24888888754  487643322100 0     112345677888887432         


Q ss_pred             CceEEEEeCCCCc--EEEcC-CCCCC-CCCcEEEEECCEEEEE
Q 020682          196 TSRTFVLDSETRK--WDSIP-PLPSP-RYSPATQLWRGRLHVM  234 (322)
Q Consensus       196 ~~~v~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~~~Lyv~  234 (322)
                      -..+..+|.+|.+  |+.-. ..... ....+-++.+++||+-
T Consensus       129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg  171 (527)
T TIGR03075       129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG  171 (527)
T ss_pred             CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence            2678999998876  77542 22111 1222345678887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=84.67  E-value=39  Score=32.53  Aligned_cols=63  Identities=13%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL  215 (322)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  215 (322)
                      ..++++|+.+.+.+.+...+.  .-......-.+.+|++....++      ..+++.+|..+..-.++...
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~  288 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDS  288 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCC--cccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCC
Confidence            469999999888877765543  1122222223456655443222      36899999999888777543

>cd00094 HX Hemopexin-like repeats

Probab=83.99  E-value=25  Score=29.81  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=49.4

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceE---ECCCCCCCC--CCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEE
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWV---DRFDMPKDM--AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVL  202 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~---~~~~~~~p~--~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~y  202 (322)
                      +++|+|-|        +..|+||..+..+.   .+.....|.  ....++.... ++++|+|.|          +..+.|
T Consensus        63 ~~~yfFkg--------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg----------~~y~ry  124 (194)
T cd00094          63 GKIYFFKG--------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG----------DKYWRY  124 (194)
T ss_pred             CEEEEECC--------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC----------CEEEEE
Confidence            89999987        46888887642221   111111110  2222233222 689999987          677888


Q ss_pred             eCCCCcEEEc---------CCCCCCCCCcEEEEEC-CEEEEEecc
Q 020682          203 DSETRKWDSI---------PPLPSPRYSPATQLWR-GRLHVMGGS  237 (322)
Q Consensus       203 d~~t~~W~~~---------~~~p~~r~~~~~~~~~-~~Lyv~GG~  237 (322)
                      |..+++-.+-         +.+|.  .-.++..++ +++|+|-|.
T Consensus       125 ~~~~~~v~~~yP~~i~~~w~g~p~--~idaa~~~~~~~~yfF~g~  167 (194)
T cd00094         125 DEKTQKMDPGYPKLIETDFPGVPD--KVDAAFRWLDGYYYFFKGD  167 (194)
T ss_pred             eCCCccccCCCCcchhhcCCCcCC--CcceeEEeCCCcEEEEECC
Confidence            8766554211         11222  223444455 889999774

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=82.92  E-value=34  Score=30.49  Aligned_cols=151  Identities=20%  Similarity=0.280  Sum_probs=78.5

Q ss_pred             CCCCEEECCCC-----CCCCcccEEE-EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-
Q 020682          105 PDLEWEQMPSA-----PVPRLDGAAI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-  177 (322)
Q Consensus       105 ~~~~W~~~~~~-----p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-  177 (322)
                      ....|+...||     ++|-.+.... .-.+.|+..||.       ..++..|.++.+-++.-.-.   .-+-|+++.- 
T Consensus        97 ~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~  166 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRN  166 (325)
T ss_pred             chhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC---cceeeeeeecc
Confidence            34467766665     3444443333 346888888873       25788899988876643222   2344555542 


Q ss_pred             -CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc-C-----CCCCCCCCc-EEEE-ECCEEEEEeccCCCCCCCCcce
Q 020682          178 -GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI-P-----PLPSPRYSP-ATQL-WRGRLHVMGGSKENRHTPGLEH  248 (322)
Q Consensus       178 -~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~-----~~p~~r~~~-~~~~-~~~~Lyv~GG~~~~~~~~~~~~  248 (322)
                       ++.|+ -|++++        .+-.+|.+|.+=..+ .     .+-.|..+- .+++ .+..-.|.||-      +.+..
T Consensus       167 ~~~qil-sG~EDG--------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lsl  231 (325)
T KOG0649|consen  167 ANGQIL-SGAEDG--------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSL  231 (325)
T ss_pred             cCccee-ecCCCc--------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeE
Confidence             33333 455543        455788888775554 1     111121221 2333 33334555552      23556


Q ss_pred             EeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEec
Q 020682          249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG  290 (322)
Q Consensus       249 ~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG  290 (322)
                      |.+-       ..+=+.+-|+|..-.  -+...+ +.+++||
T Consensus       232 whLr-------sse~t~vfpipa~v~--~v~F~~-d~vl~~G  263 (325)
T KOG0649|consen  232 WHLR-------SSESTCVFPIPARVH--LVDFVD-DCVLIGG  263 (325)
T ss_pred             Eecc-------CCCceEEEeccccee--Eeeeec-ceEEEec
Confidence            6653       555566667775554  333444 4445555

>PRK00178 tolB translocation protein TolB; Provisional

Probab=81.70  E-value=50  Score=31.58  Aligned_cols=62  Identities=15%  Similarity=0.225  Sum_probs=37.8

Q ss_pred             ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (322)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  214 (322)
                      ..++++|+.+.+-+.+...+.  .-......-.+++|++....++      ..+++.+|.++...+++..
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g--~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEG--LNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCC--CcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence            369999999888777655442  1111111123455655432211      2689999999999888764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=81.45  E-value=53  Score=31.64  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=38.0

Q ss_pred             ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (322)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  214 (322)
                      ..++++|..+.+-+.+...+.  .-........+++|++....++      ..+++.+|+.+++-+++..
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g--~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~  289 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRG--INGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN  289 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCC--CccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence            468999998888777665543  1112222223556665443222      2689999999988777654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=80.98  E-value=51  Score=31.17  Aligned_cols=63  Identities=11%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             ceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL  215 (322)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  215 (322)
                      ..++++|..+.+-..+.....  .....+....+..|++.....+      ..+++.+|..++..+.+...
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~--~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~  276 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG--MNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNG  276 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC--CccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCC
Confidence            368999998876666554432  1222222222445665543221      36799999999888877543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=80.09  E-value=18  Score=34.87  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=58.1

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE-EEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV-VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~-~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      |....+++|..      .=++.||.++.+-+++.++-.-..++-... +..++.+.++-|.        ...++.+...|
T Consensus       269 G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--------~G~I~lLhakT  334 (514)
T KOG2055|consen  269 GHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--------NGHIHLLHAKT  334 (514)
T ss_pred             CceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--------CceEEeehhhh
Confidence            44466666632      237889999988888766543112222222 2334445555554        35677788888


Q ss_pred             CcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682          207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      ++|-.--.++..........-+..|++.||...      ++.|++.
T Consensus       335 ~eli~s~KieG~v~~~~fsSdsk~l~~~~~~Ge------V~v~nl~  374 (514)
T KOG2055|consen  335 KELITSFKIEGVVSDFTFSSDSKELLASGGTGE------VYVWNLR  374 (514)
T ss_pred             hhhhheeeeccEEeeEEEecCCcEEEEEcCCce------EEEEecC
Confidence            887543333322222222233345888888643      7777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		1e-06
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		7e-05
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		1e-04
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		2e-04
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		5e-04

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 96/234 (41%), Gaps = 26/234 (11%)
Query: 66  IPHVNATKIDRQRESVAV----IDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLD 121
           IP  +++ + +Q +   V    +D++ +D  + L + F  L     EW  +P  P  R  
Sbjct: 45  IPRNHSSIVTQQNQVYVVGGLYVDEENKD--QPLQSYFFQLDNVSSEWVGLPPLPSARCL 102
Query: 122 GAAIQIKNLFYVFAGY-----GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176
               ++ +  YV AG       SLD V      Y+    KW +  ++P  + + H  V+S
Sbjct: 103 FGLGEVDDKIYVVAGKDLQTEASLDSVL----CYDPVAAKWSEVKNLPIKV-YGH-NVIS 156
Query: 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG 236
               IY + G+     +  T+R F+ + +   W  + P+ +PR      + +G++ + GG
Sbjct: 157 HNGMIYCLGGKTDD--KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG 214
Query: 237 SKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290
             E+  +  +E + +           W      P+     +       L+ +GG
Sbjct: 215 VTEDGLSASVEAFDLKT-------NKWEVMTEFPQERSSISLVSLAGSLYAIGG 261

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 26/235 (11%)
Query: 73  KIDRQRESVAVIDK-------KGQDA-ERFLSATFADLPA-PDLEWEQMPSAPVPRLDGA 123
            I R+R  VA +          G D   R  S    D  A  D  W  +    V R    
Sbjct: 48  SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107
Query: 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLGVVSDGRYI 181
           A  + ++ YV  G+   D    H  +  +  N  +D++ M  DM  A    G+V     I
Sbjct: 108 ATTLGDMIYVSGGF---DGSRRHTSMERYDPN--IDQWSMLGDMQTAREGAGLVVASGVI 162
Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241
           Y + G  G        +    D  T  W ++ P+ + R      L    ++V+GG     
Sbjct: 163 YCLGGYDGLNILNSVEK---YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA 219
Query: 242 HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFM 296
           H   +E ++I          +W T   +     +    V   RL+ + G +G+ +
Sbjct: 220 HLSSVEAYNIRT-------DSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL 267

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 71/191 (37%), Gaps = 15/191 (7%)
Query: 106 DLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD--M 163
           D  W  +      R D A +   N+ Y+  G  S  +    +D YN   + W  +     
Sbjct: 33  DYSWTDIRCPFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDCYNVVKDSWYSKLGPPT 90
Query: 164 PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF-VLDSETRKWDSIPPLPSPRYSP 222
           P+D   S     ++G+ IY   G    +        F   D+ T  W + P + + R S 
Sbjct: 91  PRD---SLAACAAEGK-IYTSGGS---EVGNSALYLFECYDTRTESWHTKPSMLTQRCSH 143
Query: 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN 282
                 G ++V GGS  N +  G    S  V D     + W    P+     +       
Sbjct: 144 GMVEANGLIYVCGGSLGN-NVSGRVLNSCEVYD--PATETWTELCPMIEARKNHGLVFVK 200
Query: 283 DRLFVVGGQEG 293
           D++F VGGQ G
Sbjct: 201 DKIFAVGGQNG 211

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKD 166
           EW  +      R       +  L Y   GY  +     S V+ YN T N+W    +M   
Sbjct: 135 EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR 194
Query: 167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL 226
            + + +GV+++   +Y V G  GP  R       V D  T  W  +  +   R +     
Sbjct: 195 RSGAGVGVLNN--LLYAVGGHDGPLVRKSVE---VYDPTTNAWRQVADMNMCRRNAGVCA 249
Query: 227 WRGRLHVMGGSKENRHTPGLEHWS 250
             G L+V+GG   + +   +E+++
Sbjct: 250 VNGLLYVVGGDDGSCNLASVEYYN 273

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 12/178 (6%)
Query: 117 VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176
           VPR    A ++  L Y   GY       S+++ YN +D  W+   D+   +  S L    
Sbjct: 14  VPRGSHMAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 69
Query: 177 DGRYIYIVSGQYG-PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235
            G  +Y V G+   P     +S     +  T +W    P+  PR      +  G ++ +G
Sbjct: 70  VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 129
Query: 236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293
           GS    H   +E +       +     W    P+          V N  L+ VGG +G
Sbjct: 130 GSHGCIHHNSVERY-------EPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-26
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	7e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	5e-22
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-16
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-16
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-13
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-23
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-16
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-14
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-08
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-20
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-19
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-18
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	9e-08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	6e-21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	5e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	6e-22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-15
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	6e-04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-11
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	4e-10
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	5e-04

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  105 bits (263), Expect = 4e-26
 Identities = 36/215 (16%), Positives = 57/215 (26%), Gaps = 35/215 (16%)

Query: 111 QMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170
            +P  PVP   G      +  Y+  G         +       D KW      P      
Sbjct: 2   VLPETPVPFKSGTGAIDNDTVYIGLGSAG---TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58

Query: 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWDSI-PPLPSPRYSPATQLW 227
                 DG  +Y+  G                  + +T  W  +    P       T + 
Sbjct: 59  ATSAFIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH 117

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA------------------------- 262
            G+ +V GG  +N      E  + A KD  A++K                          
Sbjct: 118 NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177

Query: 263 --WRTEIPIPRGGPHRAC-FVFNDRLFVVGGQEGD 294
             W      P  G   A      D+ +++ G+   
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKP 212

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 85.0 bits (210), Expect = 7e-19
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 41/237 (17%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
                  V + K     G +   F    F DL     +   +        D  A      
Sbjct: 109 MAGHVTFVHNGKAYVTGGVNQNIFNG-YFEDLNEAGKDSTAIDKINAHYFDKKA------ 161

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
                 Y    ++      ++ +  +W    + P     +   VV+ G   ++++G+  P
Sbjct: 162 ----EDYFFNKFLL----SFDPSTQQWSYAGESPWY-GTAGAAVVNKGDKTWLINGEAKP 212

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYS--PATQLWRGRLHVMGGS----------- 237
             R              KW+ + P+ SP         +    L   GG+           
Sbjct: 213 GLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQN 272

Query: 238 -KENRHTPGLEHWSIAVKDGKALEKAWR--TEIPIPRGGPHRACFVFNDRLFVVGGQ 291
            K   H    + +S  +      +  W    E+   R         +N+ L ++GG+
Sbjct: 273 GKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAYG--VSLPWNNSLLIIGGE 325

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 22/152 (14%), Positives = 36/152 (23%), Gaps = 17/152 (11%)

Query: 108 EWEQMPSAPVPRLDGAAI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMP 164
           +W     +P     GAA+    +  ++  G          V   +FT    KW     + 
Sbjct: 179 QWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238

Query: 165 KDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF--------------VLDSETRKWD 210
                +          +    G      R                     +      KWD
Sbjct: 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298

Query: 211 SIPPLPSPRYSPATQLWRGRLHVMGGSKENRH 242
               L   R    +  W   L ++GG      
Sbjct: 299 KSGELSQGRAYGVSLPWNNSLLIIGGETAGGK 330

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 97.0 bits (242), Expect = 2e-23
 Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 21/226 (9%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R+  +    D       G            +    D  W      P PR   AA   +  
Sbjct: 46  RRDAACVFWDNVVYILGGSQLFPIKRMDCYN-VVKD-SWYSKLGPPTPRDSLAACAAEGK 103

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            Y   G    +      + Y+     W  +  M         G+V     IY+  G  G 
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSHGMVEANGLIYVCGGSLGN 161

Query: 191 QCRGPTSRT-FVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249
              G    +  V D  T  W  + P+   R +      + ++  +GG         +E++
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221

Query: 250 SIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEG 293
            I           W+    +P         C      ++V+ G +G
Sbjct: 222 DIK-------LNEWKMVSPMPWKGVTV--KCAAVGSIVYVLAGFQG 258

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 93.2 bits (232), Expect = 5e-22
 Identities = 39/197 (19%), Positives = 59/197 (29%), Gaps = 31/197 (15%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W  +      R D A +   N+ Y+  G          +D YN   + W  +   P   
Sbjct: 35  SWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI--KRMDCYNVVKDSWYSKLGPP--T 90

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               L   +    IY   G             +  D+ T  W + P + + R S      
Sbjct: 91  PRDSLAACAAEGKIYTSGGSEVGNSALYLFECY--DTRTESWHTKPSMLTQRCSHGMVEA 148

Query: 228 RGRLHVMGGSKENRHT-----------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276
            G ++V GGS  N  +           P  E W+                +   R     
Sbjct: 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE------------LCPMIEARKNH-- 194

Query: 277 ACFVFNDRLFVVGGQEG 293
                 D++F VGGQ G
Sbjct: 195 GLVFVKDKIFAVGGQNG 211

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 29/181 (16%)

Query: 76  RQRESVAVIDKK-----GQD--------AERFLSATFADLPAPDLEWEQMPSAPVPRLDG 122
           R   +    + K     G +         E + + T          W   PS    R   
Sbjct: 92  RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE--------SWHTKPSMLTQRCSH 143

Query: 123 AAIQIKNLFYVFAGYGSLDYVH---SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179
             ++   L YV  G    +      +  +VY+     W +   M +  A  + G+V    
Sbjct: 144 GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE--ARKNHGLVFVKD 201

Query: 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE 239
            I+ V GQ G             D +  +W  + P+P    +         ++V+ G + 
Sbjct: 202 KIFAVGGQNGLGG---LDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG 258

Query: 240 N 240
            
Sbjct: 259 V 259

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 31/175 (17%), Positives = 45/175 (25%), Gaps = 33/175 (18%)

Query: 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187
                +F G             +N  D  W D               V     +YI+ G 
Sbjct: 12  DYRIALFGGSQP-----QSCRYFNPKDYSWTDIRCPF--EKRRDAACVFWDNVVYILGGS 64

Query: 188 YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT---- 243
                  P  R    +     W S    P+PR S A     G+++  GGS+         
Sbjct: 65  QL----FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLF 120

Query: 244 ----PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294
                  E W                 +   R          N  ++V GG  G+
Sbjct: 121 ECYDTRTESWHTK------------PSMLTQRCSH--GMVEANGLIYVCGGSLGN 161

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W ++      R +   + +K+  +   G   L  + + V+ Y+   N+W     MP   
Sbjct: 180 TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMP--W 236

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
               +   + G  +Y+++G  G    G        ++ET KW +   + +   +      
Sbjct: 237 KGVTVKCAAVGSIVYVLAGFQGV---GRLGHILEYNTETDKWVANSKVRAFPVTSCLI-- 291

Query: 228 RGRLHVMGGSKENRHT 243
              +   G ++E   T
Sbjct: 292 -CVVDTCGANEETLET 306

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 19/125 (15%), Positives = 31/125 (24%), Gaps = 27/125 (21%)

Query: 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235
                I +  G                + +   W  I      R   A   W   ++++G
Sbjct: 10  KHDYRIALFGGS-------QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILG 62

Query: 236 GSKENRHT------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289
           GS+              + W                  P PR     AC     +++  G
Sbjct: 63  GSQLFPIKRMDCYNVVKDSWYSK------------LGPPTPRDS-LAAC-AAEGKIYTSG 108

Query: 290 GQEGD 294
           G E  
Sbjct: 109 GSEVG 113

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R+   +  +  K     GQ+    L          + EW+ +   P   +      + ++
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN-EWKMVSPMPWKGVTVKCAAVGSI 249

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175
            YV AG+  +  +   +  YN   +KWV    +      +   + 
Sbjct: 250 VYVLAGFQGVGRLGH-ILEYNTETDKWVANSKVRA-FPVTSCLIC 292

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 95.8 bits (239), Expect = 5e-23
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 29/195 (14%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W Q+   P  R     + +  L +   G+     V + VD Y+   ++W    +M    
Sbjct: 41  RWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRT-VDSYDPVKDQWTSVANMRD-- 97

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
             S LG       +Y V G  G       S     + ++ +W  + P+ + R S    + 
Sbjct: 98  RRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV 154

Query: 228 RGRLHVMGGSKENRHT---------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC 278
            G L+ +GG                     W+               E+   R G     
Sbjct: 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY------------IAEMSTRRSGA--GV 200

Query: 279 FVFNDRLFVVGGQEG 293
            V N+ L+ VGG +G
Sbjct: 201 GVLNNLLYAVGGHDG 215

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 23/227 (10%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFA-DLPAPDLEWEQMPSAPVPRLDGAAIQIKN 129
           R R  +  +        G +    +    + D P  D +W  + +    R    A  +  
Sbjct: 52  RCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYD-PVKD-QWTSVANMRDRRSTLGAAVLNG 109

Query: 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189
           L Y   G+       S V+ YN   N+W     M      S +GV   G  +Y V G Y 
Sbjct: 110 LLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLYAVGG-YD 165

Query: 190 PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249
              R   S     ++ T +W  I  + + R      +    L+ +GG         +E +
Sbjct: 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY 225

Query: 250 SIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGD 294
                       AWR   ++ + R          N  L+VVGG +G 
Sbjct: 226 DPT-------TNAWRQVADMNMCRRNA--GVCAVNGLLYVVGGDDGS 263

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 48/223 (21%), Positives = 72/223 (32%), Gaps = 32/223 (14%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R     AV++       G D    LS+  A     + EW  +      R       +  L
Sbjct: 99  RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN-EWFHVAPMNTRRSSVGVGVVGGL 157

Query: 131 FYVFAGY-GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG 189
            Y   GY  +     S V+ YN T N+W    +M      S  GV      +Y V G  G
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST--RRSGAGVGVLNNLLYAVGGHDG 215

Query: 190 PQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT------ 243
           P  R       V D  T  W  +  +   R +       G L+V+GG   + +       
Sbjct: 216 PLVR---KSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYY 272

Query: 244 -PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRL 285
            P  + W++             + +   R        V + RL
Sbjct: 273 NPTTDKWTVV-----------SSCMSTGRSYA--GVTVIDKRL 302

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181
              + +  L  V  G      + S V+ Y+F + +W    ++P        G+V     +
Sbjct: 9   RTPMNLPKLMVVVGGQAP-KAIRS-VECYDFKEERWHQVAELPS--RRCRAGMVYMAGLV 64

Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR 241
           + V G  G             D    +W S+  +   R +    +  G L+ +GG   + 
Sbjct: 65  FAVGGFNG---SLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121

Query: 242 HTPGLEHWSIAVKDGKALEKAWR--TEIPIPRGGPHRACFVFNDRLFVVGG 290
               +E ++I           W     +   R        V    L+ VGG
Sbjct: 122 GLSSVEAYNIK-------SNEWFHVAPMNTRRSSV--GVGVVGGLLYAVGG 163

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 15/122 (12%)

Query: 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVM 234
           ++  + + +V GQ               D +  +W  +  LPS R         G +  +
Sbjct: 12  MNLPKLMVVVGGQAP----KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAV 67

Query: 235 GGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP--IPRGGPHRACFVFNDRLFVVGGQE 292
           GG   +     ++ +          +  W +       R     A  V N  L+ VGG +
Sbjct: 68  GGFNGSLRVRTVDSYDPV-------KDQWTSVANMRDRRST-LGAA-VLNGLLYAVGGFD 118

Query: 293 GD 294
           G 
Sbjct: 119 GS 120

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 93.9 bits (234), Expect = 3e-22
 Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 29/196 (14%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSH---VDVYNFTDNKWVDRFDMP 164
            W ++    VPR   A   +  L Y   G  +    ++    +D YN   N+W     M 
Sbjct: 50  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109

Query: 165 KDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224
                + +GV     +IY V G +G       +     + E  +W  + P+ + R     
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164

Query: 225 QLWRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRA 277
            +    L+ +GG              P    W +             T +   R G    
Sbjct: 165 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM------------ITAMNTIRSGA--G 210

Query: 278 CFVFNDRLFVVGGQEG 293
             V ++ ++  GG +G
Sbjct: 211 VCVLHNCIYAAGGYDG 226

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 27/229 (11%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADL----PAPDLEWEQMPSAPVPRLDGAAIQ 126
           R   +  V+        G++     +   + L    P  + +W       VPR       
Sbjct: 61  RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QWSPCAPMSVPRNRIGVGV 119

Query: 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186
           I    Y   G     + +S V+ Y    ++W     M        +GV    R +Y V G
Sbjct: 120 IDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPML--TRRIGVGVAVLNRLLYAVGG 176

Query: 187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGL 246
             G       +       E  +W  I  + + R      +    ++  GG         +
Sbjct: 177 FDGTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSV 233

Query: 247 EHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEG 293
           E + +         + W     +   R        V   R++V+GG +G
Sbjct: 234 ERYDVE-------TETWTFVAPMKHRRSAL--GITVHQGRIYVLGGYDG 273

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 12/173 (6%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R R  V VID       G       ++     P  D EW  +      R+      +  L
Sbjct: 112 RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD-EWHLVAPMLTRRIGVGVAVLNRL 170

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            Y   G+   + ++S  + Y    N+W     M      S  GV      IY   G  G 
Sbjct: 171 LYAVGGFDGTNRLNS-AECYYPERNEWRMITAMNT--IRSGAGVCVLHNCIYAAGGYDGQ 227

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243
                 +     D ET  W  + P+   R +    + +GR++V+GG   +   
Sbjct: 228 DQ---LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFL 277

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 82.4 bits (204), Expect = 3e-18
 Identities = 42/189 (22%), Positives = 65/189 (34%), Gaps = 17/189 (8%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
                 S  VPR   A   +  L Y   GY       S+++ YN ++  W+   D+   +
Sbjct: 5   HHHHHSSGLVPRGSHAPK-VGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ--V 59

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT-FVLDSETRKWDSIPPLPSPRYSPATQL 226
             S L     G  +Y V G+         S      +  T +W    P+  PR      +
Sbjct: 60  PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV 119

Query: 227 WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR--TEIPIPRGGPHRACFVFNDR 284
             G ++ +GGS    H   +E +             W     +   R G      V N  
Sbjct: 120 IDGHIYAVGGSHGCIHHNSVERYEPE-------RDEWHLVAPMLTRRIGV--GVAVLNRL 170

Query: 285 LFVVGGQEG 293
           L+ VGG +G
Sbjct: 171 LYAVGGFDG 179

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 13/123 (10%)

Query: 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVM 234
              GR IY   G +        S     +     W  +  L  PR   A  +  G L+ +
Sbjct: 21  PKVGRLIYTAGGYFR----QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAV 76

Query: 235 GGSKENRHTPGLEHWSIAVK-DGKALEKAWRTEIP--IPRGGPHRACFVFNDRLFVVGGQ 291
           GG   N    G    S     +       W    P  +PR        V +  ++ VGG 
Sbjct: 77  GG--RNNSPDGNTDSSALDCYNPMT--NQWSPCAPMSVPRNR-IGVG-VIDGHIYAVGGS 130

Query: 292 EGD 294
            G 
Sbjct: 131 HGC 133

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 26/232 (11%)

Query: 76  RQRESVAVIDKK----------GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAI 125
           R   S+     +           ++ ++ L + F  L     EW  +P  P  R      
Sbjct: 47  RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLG 106

Query: 126 QIKNLFYVFAGY-GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184
           ++ +  YV AG     +     V  Y+    KW +  ++P         V+S    IY +
Sbjct: 107 EVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCL 164

Query: 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTP 244
            G+   +    T+R F+ + +   W  + P+ +PR      + +G++ + GG  E+  + 
Sbjct: 165 GGKTDDKKC--TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA 222

Query: 245 GLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGD 294
            +E + +           W    E P  R     +       L+ +GG    
Sbjct: 223 SVEAFDLK-------TNKWEVMTEFPQERSSI--SLVSLAGSLYAIGGFAMI 265

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 90.5 bits (225), Expect = 6e-21
 Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 41/237 (17%)

Query: 75  DRQRESVAVIDK----KGQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           D  R  + V D         A  +      D P  +  +    +  +PR   + +  +N 
Sbjct: 6   DIPRHGMFVKDLILLVNDTAAVAY------D-PMENECYLTALAEQIPRNHSSIVTQQNQ 58

Query: 131 FYVFAGY-----GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185
            YV  G           + S+    +   ++WV    +P   A    G+      IY+V+
Sbjct: 59  VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS--ARCLFGLGEVDDKIYVVA 116

Query: 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT-- 243
           G    Q           D    KW  +  LP   Y        G ++ +GG  +++    
Sbjct: 117 G-KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175

Query: 244 ------PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD 294
                 P    W                 +  PR        +   ++ + GG   D
Sbjct: 176 RVFIYNPKKGDWKD------------LAPMKTPRSMF--GVAIHKGKIVIAGGVTED 218

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 42/230 (18%), Positives = 68/230 (29%), Gaps = 35/230 (15%)

Query: 76  RQRESVAVIDKK-----GQD---------AERFLSATFADLPAPDLEWEQMPSAPVPRLD 121
           R    +  +D K     G+D            +             +W ++ + P+    
Sbjct: 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA--------KWSEVKNLPIKVYG 151

Query: 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI 181
              I    + Y   G        + V +YN     W D   M      S  GV      I
Sbjct: 152 HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--TPRSMFGVAIHKGKI 209

Query: 182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG----S 237
            I  G         ++     D +T KW+ +   P  R S +     G L+ +GG     
Sbjct: 210 VIAGGVTEDGL---SASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQ 266

Query: 238 KENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
            E++     E   I   +    +K W   +   R     A      RL +
Sbjct: 267 LESKEFAPTEVNDIWKYEDD--KKEWAGMLKEIRYA-SGAS-CLATRLNL 312

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 16/124 (12%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R    VA+   K     G   +   ++  A     + +WE M   P  R   + + +   
Sbjct: 197 RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMTEFPQERSSISLVSLAGS 255

Query: 131 FYVFAGYGSLDYVH--------SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIY 182
            Y   G+  +            + +  Y     +W            S    ++    ++
Sbjct: 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI--RYASGASCLATRLNLF 313

Query: 183 IVSG 186
            +S 
Sbjct: 314 KLSK 317

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 20/192 (10%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK---WVDRFDMP 164
           EW  +PS    R   A++ + +  YV  GY     + S V+  ++T ++   W     M 
Sbjct: 42  EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMN 100

Query: 165 KDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT 224
                   G  + G  IY+  G  G       +     D    +W  +  + + R     
Sbjct: 101 V--RRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155

Query: 225 QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAW--RTEIPIPRGGPHRACFVFN 282
            +  G ++ +GG         +E +             W   T +   R G      + N
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVEKYDPH-------TGHWTNVTPMATKRSGA--GVALLN 206

Query: 283 DRLFVVGGQEGD 294
           D ++VVGG +G 
Sbjct: 207 DHIYVVGGFDGT 218

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 46/227 (20%), Positives = 79/227 (34%), Gaps = 24/227 (10%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPD--LEWEQMPSAPVPRLDGAAIQIK 128
           R+  +   +  +     G D    LS+        D    W  +    V R    A  + 
Sbjct: 53  RRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLG 112

Query: 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188
           ++ YV  G+       S ++ Y+   ++W    DM    A    G+V     IY + G  
Sbjct: 113 DMIYVSGGFDGSRRHTS-MERYDPNIDQWSMLGDMQT--AREGAGLVVASGVIYCLGGYD 169

Query: 189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248
           G       +     D  T  W ++ P+ + R      L    ++V+GG     H   +E 
Sbjct: 170 GLNI---LNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226

Query: 249 WSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEG 293
           ++I          +W T   +  PR        V   RL+ + G +G
Sbjct: 227 YNIR-------TDSWTTVTSMTTPRCYV--GATVLRGRLYAIAGYDG 264

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 42/220 (19%), Positives = 70/220 (31%), Gaps = 33/220 (15%)

Query: 76  RQRESVAVIDKK-----GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL 130
           R       +        G D  R  ++     P  D +W  +      R     +    +
Sbjct: 103 RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNID-QWSMLGDMQTAREGAGLVVASGV 161

Query: 131 FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGP 190
            Y   GY  L+ ++S V+ Y+     W +   M      S  GV     +IY+V G  G 
Sbjct: 162 IYCLGGYDGLNILNS-VEKYDPHTGHWTNVTPMAT--KRSGAGVALLNDHIYVVGGFDGT 218

Query: 191 QCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT------- 243
                 S     +  T  W ++  + +PR      + RGRL+ + G   N          
Sbjct: 219 AH---LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYD 275

Query: 244 PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
           P ++ W +             T +   R      C V  +
Sbjct: 276 PIIDSWEVV------------TSMGTQRCD-AGVC-VLRE 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 19/167 (11%)

Query: 132 YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQ 191
            V  G+GS       V+ Y+    +W     +       ++  VS    IY++ G  G  
Sbjct: 18  LVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASVSLHDRIYVIGGYDG-- 73

Query: 192 CRGPTSRTFVLDSETRK---WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248
            R   S    LD    +   W S+ P+   R           ++V GG   +R    +E 
Sbjct: 74  -RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMER 132

Query: 249 WSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEG 293
           +             W    ++   R G      V +  ++ +GG +G
Sbjct: 133 YDPN-------IDQWSMLGDMQTAREGA--GLVVASGVIYCLGGYDG 170

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229
           +   + ++   + +V G    Q   P       D +T++W  +P +   R   A+     
Sbjct: 7   TRARLGANEV-LLVVGGFGSQQS--PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63

Query: 230 RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFV 287
           R++V+GG         +E       +    +  W +   + + RG    A     D ++V
Sbjct: 64  RIYVIGGYDGRSRLSSVECLDYTADE----DGVWYSVAPMNVRRGL-AGAT-TLGDMIYV 117

Query: 288 VGGQEGD 294
            GG +G 
Sbjct: 118 SGGFDGS 124

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 92.1 bits (229), Expect = 2e-21
 Identities = 37/191 (19%), Positives = 56/191 (29%), Gaps = 13/191 (6%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
           +W +    P        +   +L YV  G GS     + + VY+    +W +   M    
Sbjct: 128 KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ--T 185

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
           A S  G       I + +G         TS   V      KW      P  R S +    
Sbjct: 186 ARSLFGATVHDGRIIVAAGVTDTGL---TSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242

Query: 228 RGRLHVMGGSKENRHTPGLEHW----SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283
            G L+ +GG        G         I   + +  EK W   +                
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EKKWEGVLREIA--YAAGATFLPV 298

Query: 284 RLFVVGGQEGD 294
           RL V+   +  
Sbjct: 299 RLNVLRLTKMA 309

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 91.3 bits (227), Expect = 3e-21
 Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 36/219 (16%)

Query: 88  GQDAERFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGY-----GSLDY 142
            + A  +      D PA +  +    S+ VP+   + +  +N  +V  G         D 
Sbjct: 12  EEGAVAY------D-PAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDP 64

Query: 143 VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202
           + ++   ++  D++W+    +P        G+      IY+V G+               
Sbjct: 65  MSAYFLQFDHLDSEWLGMPPLPS--PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCY 122

Query: 203 DSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT--------PGLEHWSIAVK 254
           D  + KW    PLP   Y          ++V+GG   +R          P    W     
Sbjct: 123 DRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE--- 179

Query: 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293
                       +   R        V + R+ V  G   
Sbjct: 180 ---------LAPMQTARSLF--GATVHDGRIIVAAGVTD 207

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 16/117 (13%)

Query: 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKW-DSIPPLPSPRYSPATQLWRGRLHVMGGSKE 239
           I+++S                 D    +   +      P+   +      ++ V GG   
Sbjct: 7   IFMISE----------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFY 56

Query: 240 NRHTPGLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGD 294
           N      +  S        L+  W     +P PR           + ++VVGG+E  
Sbjct: 57  NEDN-KEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLG-EALNSIYVVGGREIK 110

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 66.7 bits (162), Expect = 2e-12
 Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 20/199 (10%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFD 162
           EW  + S    R   +A  + +    +  G      +     +YN T+  +         
Sbjct: 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAML----LYNVTEEIFKDVTPKDEF 534

Query: 163 MPKDMAHSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRKW-----DSIPPLP 216
               +  + L      +   I+ G +  Q      +  F  D+E           +    
Sbjct: 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL 594

Query: 217 SPRYS-PATQLWRGRLHVMGG-SKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP 274
             RY      +   +L ++GG S            S+               I       
Sbjct: 595 FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLM 654

Query: 275 ---HRACFVFNDRLFVVGG 290
                        + ++GG
Sbjct: 655 LAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 64.0 bits (155), Expect = 2e-11
 Identities = 24/224 (10%), Positives = 56/224 (25%), Gaps = 26/224 (11%)

Query: 88  GQDAERFLSATFADLPAPDLEWEQMPSA----PVPRLDGAAIQI--KNLFYVFAGYGSLD 141
           G +  R        +    ++ + +  +    PV R+      I   N   +  G  +  
Sbjct: 405 GSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH 464

Query: 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201
              S   +++    +W     +       H         + I+ G              +
Sbjct: 465 QGLSDNWIFDMKTREWSMIKSLSHTR-FRHSACSLPDGNVLILGG------VTEGPAMLL 517

Query: 202 LDSETRKWDSIPP---LPSPRYSPATQLWRGRLH----VMGGSKENRHTPGLEHWSIAVK 254
            +     +  + P           A   +         + GG  +       +   I   
Sbjct: 518 YNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTV--SDKAIIFKY 575

Query: 255 DGKALEKAWRTEIPIPRGGPHR----ACFVFNDRLFVVGGQEGD 294
           D +   +       +      R      ++   +L +VGG    
Sbjct: 576 DAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPS 619

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 59.8 bits (144), Expect = 4e-10
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 28/196 (14%)

Query: 113 PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW------VDRFDMPKD 166
              P+ R  G      N  +   G     Y  + +   +   +K       V   ++P  
Sbjct: 382 CECPINRKFGDVDVAGNDVFYMGGSN--PYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA 439

Query: 167 -MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSP-AT 224
            M H+    +S    + ++ G+  P      S  ++ D +TR+W  I  L   R+   A 
Sbjct: 440 RMCHT-FTTISRNNQLLLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSAC 496

Query: 225 QLWRGRLHVMGGSKEN----RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF- 279
            L  G + ++GG  E      +    E +          +   + E            F 
Sbjct: 497 SLPDGNVLILGGVTEGPAMLLYNVTEEIFK---------DVTPKDEFFQNSLVSAGLEFD 547

Query: 280 -VFNDRLFVVGGQEGD 294
            V    + + GG    
Sbjct: 548 PVSKQGIILGGGFMDQ 563

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 27/205 (13%), Positives = 58/205 (28%), Gaps = 22/205 (10%)

Query: 109 WEQMPSAPVPRL---DGAAIQIKNLF-YVFAGYGS--LDYVHSHVDVYNFTDNKWV---- 158
           W  +P+A V  +   D   +   +   ++F            S    + +T         
Sbjct: 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 385

Query: 159 -----DRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD-----SETRK 208
                +R   P  M  + +   +    I    G    Q    T+   ++      +    
Sbjct: 386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445

Query: 209 WDSIPPLPSPR-YSPATQLWRGRLHVMGGSKENRHTPGLE-HWSIAVKDGKALEKAWRTE 266
             +   L   R +  +  L  G   + GG +           ++  +   +      +  
Sbjct: 446 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505

Query: 267 IPIPRGGPHRACFVFNDRLFVVGGQ 291
             I R     +  + + R+F  GG 
Sbjct: 506 NSIVRVYHSISLLLPDGRVFNGGGG 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.97
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.97
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.9
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.53
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.05
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.91
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.86
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.81
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.25
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.21
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.14
3jrp_A	379	Fusion protein of protein transport protein SEC13	94.69
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.23
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.1
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	92.71
3jro_A	753	Fusion protein of protein transport protein SEC13	92.26
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.99
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	91.47
3v9f_A	781	Two-component system sensor histidine kinase/RESP	91.01
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	90.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	90.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	90.68
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	90.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	90.27
3jrp_A	379	Fusion protein of protein transport protein SEC13	90.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	89.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	89.84
3ow8_A	321	WD repeat-containing protein 61; structural genomi	89.68
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	89.41
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	89.31
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	89.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	89.12
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	89.03
3ow8_A	321	WD repeat-containing protein 61; structural genomi	88.86
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	88.74
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	88.6
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	88.48
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	88.41
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	88.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	88.14
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	87.96
3ott_A	758	Two-component system sensor histidine kinase; beta	87.9
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	87.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	87.75
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	87.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	87.59
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	87.52
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	87.39
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	87.12
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	86.65
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	86.57
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	86.56
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	86.47
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	86.39
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	86.37
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	86.26
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	86.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	85.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	85.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	85.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	85.64
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	85.49
3jro_A	753	Fusion protein of protein transport protein SEC13	85.18
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	84.84
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	84.69
2pm7_B	297	Protein transport protein SEC13, protein transport	84.07
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	83.55
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	83.05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	82.41
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	82.02
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	81.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	81.71
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	81.66
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	81.63
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	81.59
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	81.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	81.26
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	81.16
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	81.12
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	80.85
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	80.75
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	80.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	80.48
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	80.44
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	80.1

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=263.42  Aligned_cols=204  Identities=17%  Similarity=0.291  Sum_probs=176.9

Q ss_pred             hhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682           95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~  174 (322)
                      ..++++.||+.+++|+.++++|.+|..|+++.++++|||+||.+......+++++||+.+++|+.++++|.  +|..|++
T Consensus        68 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~  145 (306)
T 3ii7_A           68 PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSHGM  145 (306)
T ss_dssp             BCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCBSCEE
T ss_pred             CcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--CcceeEE
Confidence            44588999999999999999999999999999999999999997555566789999999999999999987  7999999


Q ss_pred             EEeCCEEEEEecccCCCCC-CCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeee
Q 020682          175 VSDGRYIYIVSGQYGPQCR-GPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV  253 (322)
Q Consensus       175 ~~~~~~Iyv~GG~~~~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v  253 (322)
                      ++.+++|||+||..+.... ..++++++||+.+++|++++++|.+|..|++++++++||++||.+.....++++.||   
T Consensus       146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd---  222 (306)
T 3ii7_A          146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYD---  222 (306)
T ss_dssp             EEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEE---
T ss_pred             EEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEee---
Confidence            9999999999998765421 125899999999999999999999999999999999999999987654455555555   


Q ss_pred             eccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeeee
Q 020682          254 KDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKCS  307 (322)
Q Consensus       254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~~  307 (322)
                          +++++|+.++++|..+.++++++++++|||+||.++.      ..|+|....|...
T Consensus       223 ----~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          223 ----IKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             ----TTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             ----CCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence                6699999999999999999999999999999998754      3577777666543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=263.76  Aligned_cols=204  Identities=19%  Similarity=0.276  Sum_probs=174.5

Q ss_pred             hhhhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCC--CCCCcceeEEEECCCCceEECCCCCCCCCCc
Q 020682           93 RFLSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS--LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS  170 (322)
Q Consensus        93 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~  170 (322)
                      ....++++.||+.+++|+.++++|.+|..|+++.++++|||+||.+.  .....+++++||+.+++|+.++++|.  +|.
T Consensus        63 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~  140 (315)
T 4asc_A           63 DPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVY  140 (315)
T ss_dssp             SCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCB
T ss_pred             cccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--ccc
Confidence            33445689999999999999999999999999999999999999752  34566789999999999999999887  799


Q ss_pred             eeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEe
Q 020682          171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS  250 (322)
Q Consensus       171 ~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~  250 (322)
                      +|++++.+++|||+||......  .++++++||+.+++|++++++|.+|..|++++++++|||+||.++....+++    
T Consensus       141 ~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~----  214 (315)
T 4asc_A          141 GHTVLSHMDLVYVIGGKGSDRK--CLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSA----  214 (315)
T ss_dssp             SCEEEEETTEEEEECCBCTTSC--BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEE----
T ss_pred             ceeEEEECCEEEEEeCCCCCCc--ccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceE----
Confidence            9999999999999999843332  2699999999999999999999999999999999999999998765433334    


Q ss_pred             eeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC---------------CCCCCCCCCeeeee
Q 020682          251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG---------------DFMAKPGSPIFKCS  307 (322)
Q Consensus       251 ~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~---------------~~~~~p~~~~~~~~  307 (322)
                         +.||+++++|+.++++|.++.++++++++++|||+||.++               ...|+|....|+..
T Consensus       215 ---~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          215 ---EVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             ---EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ---EEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence               4444779999999999999999999999999999999753               23578877766554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=258.14  Aligned_cols=199  Identities=20%  Similarity=0.330  Sum_probs=173.6

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++++.||+.+++|+.++++|.+|..|+++.++++|||+||.+  ....+++++||+.+++|+.++++|.  +|.+|+++
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~   98 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPPT--PRDSLAAC   98 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECCSS--CCBSCEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCCc--cccceeEE
Confidence            4588999999999999999999999999999999999999987  4556789999999999999999887  89999999


Q ss_pred             EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCC----CCCcceEee
Q 020682          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH----TPGLEHWSI  251 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~----~~~~~~~~~  251 (322)
                      +.+++|||+||.+....  .++++++||+.+++|++++++|.+|..|+++.++++||++||......    .+++++|| 
T Consensus        99 ~~~~~iyv~GG~~~~~~--~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd-  175 (306)
T 3ii7_A           99 AAEGKIYTSGGSEVGNS--ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD-  175 (306)
T ss_dssp             EETTEEEEECCBBTTBS--CCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEE-
T ss_pred             EECCEEEEECCCCCCCc--EeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeC-
Confidence            99999999999873222  269999999999999999999999999999999999999999876543    55555555 


Q ss_pred             eeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeeee
Q 020682          252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKCS  307 (322)
Q Consensus       252 ~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~~  307 (322)
                            +++++|+.++++|.++.++++++++++|||+||.++.      ..|+|....|...
T Consensus       176 ------~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          176 ------PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             ------TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             ------CCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence                  6699999999999999999999999999999997543      4577776655433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.8e-33  Score=257.18  Aligned_cols=200  Identities=18%  Similarity=0.281  Sum_probs=175.4

Q ss_pred             hhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682           95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~  174 (322)
                      ..++++.||+.+++|+.+++||.+|..|+++.++++|||+||.+... ..+++++||+.+++|+.++++|.  +|..|++
T Consensus        88 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~  164 (308)
T 1zgk_A           88 DSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGV  164 (308)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEE
T ss_pred             ecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCc--cccceEE
Confidence            34579999999999999999999999999999999999999986543 45679999999999999999887  7999999


Q ss_pred             EEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeee
Q 020682          175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK  254 (322)
Q Consensus       175 ~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~  254 (322)
                      ++.+++||++||.++...   ++++++||+.+++|+.++++|.+|..|++++++++||++||.++....++++.||    
T Consensus       165 ~~~~~~iyv~GG~~~~~~---~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd----  237 (308)
T 1zgk_A          165 AVLNRLLYAVGGFDGTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD----  237 (308)
T ss_dssp             EEETTEEEEECCBCSSCB---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE----
T ss_pred             EEECCEEEEEeCCCCCCc---CceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEe----
Confidence            999999999999876653   6899999999999999999999999999999999999999997665556666665    


Q ss_pred             ccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCC------CCCCCCCeeeee
Q 020682          255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF------MAKPGSPIFKCS  307 (322)
Q Consensus       255 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~------~~~p~~~~~~~~  307 (322)
                         +++++|+.+.++|..+..+++++++++|||+||.++..      .|+|....|...
T Consensus       238 ---~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          238 ---VETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             ---TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             ---CCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence               56999999999999998889999999999999987643      467766655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=7e-34  Score=260.87  Aligned_cols=202  Identities=19%  Similarity=0.351  Sum_probs=172.9

Q ss_pred             hhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCC-CCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      +...++.||+.+++|+.++++|.+|..|+++.++++|||+||.+. .....+++++||+.+++|+.++++|.  +|.+|+
T Consensus        76 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~  153 (318)
T 2woz_A           76 LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHN  153 (318)
T ss_dssp             CCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESCE
T ss_pred             ccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cccccE
Confidence            444589999999999999999999999999999999999999863 34566789999999999999998887  799999


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeee
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAV  253 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v  253 (322)
                      +++.+++|||+||......  .++++++||+.+++|++++++|.+|..|++++++++|||+||.+.....+       ++
T Consensus       154 ~~~~~~~iyv~GG~~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~-------~~  224 (318)
T 2woz_A          154 VISHNGMIYCLGGKTDDKK--CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA-------SV  224 (318)
T ss_dssp             EEEETTEEEEECCEESSSC--BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEE-------EE
T ss_pred             EEEECCEEEEEcCCCCCCC--ccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccc-------eE
Confidence            9999999999999864432  26899999999999999999999999999999999999999987543333       34


Q ss_pred             eccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC---------------CCCCCCCCeeeee
Q 020682          254 KDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD---------------FMAKPGSPIFKCS  307 (322)
Q Consensus       254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~---------------~~~~p~~~~~~~~  307 (322)
                      +.||+++++|+.++++|..+.++++++++++|||+||.+..               ..|+|....|...
T Consensus       225 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          225 EAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            44457799999999999999999999999999999997642               2467777666544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=255.99  Aligned_cols=200  Identities=21%  Similarity=0.324  Sum_probs=174.7

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++++.||+.+++|+.++++|.+|..|+++.++++|||+||.+... ..+++++||+.+++|+.++++|.  +|..|+++
T Consensus        76 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~  152 (302)
T 2xn4_A           76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVG  152 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSCEEE
T ss_pred             ccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCceEE
Confidence            3578999999999999999999999999999999999999987554 45789999999999999999987  79999999


Q ss_pred             EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeec
Q 020682          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD  255 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~  255 (322)
                      +.+++||++||.++... ..++++++||+.+++|+.++++|.+|..|++++++++||++||.++....++++.||     
T Consensus       153 ~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-----  226 (302)
T 2xn4_A          153 VVGGLLYAVGGYDVASR-QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD-----  226 (302)
T ss_dssp             EETTEEEEECCEETTTT-EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEE-----
T ss_pred             EECCEEEEEeCCCCCCC-ccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEe-----
Confidence            99999999999876532 126899999999999999999999999999999999999999987765566666665     


Q ss_pred             cccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeee
Q 020682          256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKC  306 (322)
Q Consensus       256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~  306 (322)
                        +++++|+.+.++|..+.++++++++++|||+||.++.      ..|+|....|..
T Consensus       227 --~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          227 --PTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             --TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             --CCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence              5699999999999989888999999999999998754      456777665544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.6e-33  Score=253.68  Aligned_cols=200  Identities=20%  Similarity=0.335  Sum_probs=175.9

Q ss_pred             hhhhccccccCCCC---EEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCce
Q 020682           95 LSATFADLPAPDLE---WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH  171 (322)
Q Consensus        95 ~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~  171 (322)
                      ..++++.||+.+++   |+.++++|.+|..|+++.++++|||+||.+... ..+++++||+.+++|+.++++|.  +|..
T Consensus        76 ~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~  152 (301)
T 2vpj_A           76 RLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQT--AREG  152 (301)
T ss_dssp             BCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSS--CCBS
T ss_pred             cCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCC--Cccc
Confidence            34578999999999   999999999999999999999999999987654 35789999999999999998887  7999


Q ss_pred             eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      |++++.+++||++||.++...   ++++++||+.+++|++++++|.+|..|+++.++++||++||.++....++++.|+ 
T Consensus       153 ~~~~~~~~~iyv~GG~~~~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd-  228 (301)
T 2vpj_A          153 AGLVVASGVIYCLGGYDGLNI---LNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYN-  228 (301)
T ss_dssp             CEEEEETTEEEEECCBCSSCB---CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE-
T ss_pred             ceEEEECCEEEEECCCCCCcc---cceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEe-
Confidence            999999999999999876543   6999999999999999999999999999999999999999997765556666665 


Q ss_pred             eeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeeee
Q 020682          252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKCS  307 (322)
Q Consensus       252 ~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~~  307 (322)
                            +++++|+.++++|.++..+++++++++|||+||.++.      ..|+|....|...
T Consensus       229 ------~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          229 ------IRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             ------TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             ------CCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence                  5699999999999999889999999999999998754      3577777666443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.8e-33  Score=257.09  Aligned_cols=198  Identities=18%  Similarity=0.294  Sum_probs=172.9

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecC---CCCCCcceeEEEECCCCceEECCCCCCCCCCcee
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYG---SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~  172 (322)
                      .++++.||+.+++|+.++++|.+|..++++.++++|||+||..   ......+++++||+.+++|++++++|.  +|..|
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~  115 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRI  115 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTC
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc--Ccccc
Confidence            3478999999999999999999999999999999999999983   333455789999999999999999987  79999


Q ss_pred             EEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682          173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       173 ~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      ++++.+++|||+||..+...   ++++++||+.+++|+.++++|.+|..|++++++++||++||.++....++++.|+  
T Consensus       116 ~~~~~~~~iyv~GG~~~~~~---~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd--  190 (308)
T 1zgk_A          116 GVGVIDGHIYAVGGSHGCIH---HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYY--  190 (308)
T ss_dssp             EEEEETTEEEEECCEETTEE---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE--
T ss_pred             EEEEECCEEEEEcCCCCCcc---cccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEe--
Confidence            99999999999999876543   6899999999999999999999999999999999999999997765566666665  


Q ss_pred             eeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeee
Q 020682          253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFK  305 (322)
Q Consensus       253 v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~  305 (322)
                           +.+++|+.++++|.++..+++++++++|||+||.++.      ..|+|....|.
T Consensus       191 -----~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          191 -----PERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             -----TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             -----CCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence                 5699999999999999999999999999999998643      34666665444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=252.81  Aligned_cols=197  Identities=19%  Similarity=0.354  Sum_probs=171.3

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++++.||+.+++|+.++++|.+|..|+++.++++|||+||.+... ..+++++||+.+++|++++++|.  +|..|+++
T Consensus        29 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~  105 (302)
T 2xn4_A           29 IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVANMRD--RRSTLGAA  105 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSS-BCCCEEEEETTTTEEEEECCCSS--CCBSCEEE
T ss_pred             CCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCc-cccceEEECCCCCceeeCCCCCc--cccceEEE
Confidence            3478999999999999999999999999999999999999987554 44679999999999999999987  79999999


Q ss_pred             EeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCC--CCCCcceEeeee
Q 020682          176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAV  253 (322)
Q Consensus       176 ~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~--~~~~~~~~~~~v  253 (322)
                      +.+++|||+||.++...   ++++++||+.+++|++++++|.+|..|++++++++||++||.+...  ..++++.||   
T Consensus       106 ~~~~~iyv~GG~~~~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd---  179 (302)
T 2xn4_A          106 VLNGLLYAVGGFDGSTG---LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYN---  179 (302)
T ss_dssp             EETTEEEEEEEECSSCE---EEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEE---
T ss_pred             EECCEEEEEcCCCCCcc---CceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEe---
Confidence            99999999999876543   6899999999999999999999999999999999999999986542  244555555   


Q ss_pred             eccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCC------CCCCCCCeee
Q 020682          254 KDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF------MAKPGSPIFK  305 (322)
Q Consensus       254 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~------~~~p~~~~~~  305 (322)
                          +.+++|+.++++|.++.++++++++++|||+||.++..      .|+|....|.
T Consensus       180 ----~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          180 ----ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             ----TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             ----CCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence                66999999999999999999999999999999987542      4666665444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=249.65  Aligned_cols=199  Identities=19%  Similarity=0.340  Sum_probs=174.2

Q ss_pred             hhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCc---eEECCCCCCCCCCce
Q 020682           95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK---WVDRFDMPKDMAHSH  171 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~p~~r~~  171 (322)
                      ..++++.||+.+++|+.++++|.+|..|+++.++++|||+||.++.. ..+++++||+.+++   |+.++++|.  +|..
T Consensus        29 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~  105 (301)
T 2vpj_A           29 PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS-RLSSVECLDYTADEDGVWYSVAPMNV--RRGL  105 (301)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTCCTTCCCEEECCCSS--CCBS
T ss_pred             ceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCc-cCceEEEEECCCCCCCeeEECCCCCC--Cccc
Confidence            34588999999999999999999999999999999999999987443 45789999999999   999999887  7999


Q ss_pred             eEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682          172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       172 ~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      |++++.+++|||+||..+...   ++++++||+.+++|+.++++|.+|..|++++++++||++||.++....++++.|+ 
T Consensus       106 ~~~~~~~~~lyv~GG~~~~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d-  181 (301)
T 2vpj_A          106 AGATTLGDMIYVSGGFDGSRR---HTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYD-  181 (301)
T ss_dssp             CEEEEETTEEEEECCBCSSCB---CCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE-
T ss_pred             eeEEEECCEEEEEcccCCCcc---cceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEe-
Confidence            999999999999999876543   6899999999999999999999999999999999999999987765566666666 


Q ss_pred             eeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeee
Q 020682          252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKC  306 (322)
Q Consensus       252 ~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~  306 (322)
                            +.+++|+.++++|.++..+++++++++|||+||.++.      ..|++....|..
T Consensus       182 ------~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          182 ------PHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             ------TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             ------CCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence                  6699999999999999999999999999999998654      246666655543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=252.75  Aligned_cols=200  Identities=16%  Similarity=0.227  Sum_probs=168.2

Q ss_pred             hhccccccCCCCEEECCCC--CCCCcccEEEEECCEEEEEeec-----CCCCCCcceeEEEECCCCceEECCCCCCCCCC
Q 020682           97 ATFADLPAPDLEWEQMPSA--PVPRLDGAAIQIKNLFYVFAGY-----GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH  169 (322)
Q Consensus        97 ~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~~~~lyv~GG~-----~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r  169 (322)
                      .+++.||+.+++|+. +++  |.+|.+|+++.++++|||+||.     .......+++++||+.+++|+.++++|.  +|
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r   89 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS--PR   89 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--CE
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--ch
Confidence            368899999999987 666  4589999999999999999996     2223344679999999999999999987  89


Q ss_pred             ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEecc-CCCCCCCCcce
Q 020682          170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS-KENRHTPGLEH  248 (322)
Q Consensus       170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~-~~~~~~~~~~~  248 (322)
                      .+|++++.+++|||+||.+.......++++++||+.+++|++++++|.+|..|+++.++++||++||. ......+++++
T Consensus        90 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  169 (315)
T 4asc_A           90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCV  169 (315)
T ss_dssp             ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEE
T ss_pred             hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEE
Confidence            99999999999999999864221233799999999999999999999999999999999999999998 44445666666


Q ss_pred             EeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC------CCCCCCCCeeee
Q 020682          249 WSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD------FMAKPGSPIFKC  306 (322)
Q Consensus       249 ~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~------~~~~p~~~~~~~  306 (322)
                      |+       +.+++|+.++++|.++..+++++++++|||+||.++.      ..|+|....|..
T Consensus       170 yd-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          170 YD-------PKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             Ee-------CCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            66       6699999999999999999999999999999998754      356776655543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.97  E-value=2.6e-31  Score=247.23  Aligned_cols=189  Identities=20%  Similarity=0.274  Sum_probs=153.1

Q ss_pred             hccccccC--CCCEEECCCCC-CCCcccEEEEECCEEEEEeec-C---CCCCCcceeEEEECCCCceEECCCCCCCCCCc
Q 020682           98 TFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGY-G---SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHS  170 (322)
Q Consensus        98 ~~~~yd~~--~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~-~---~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~  170 (322)
                      +++.||+.  +++|+.+++|| .+|..|++++++++|||+||. .   ......+++++||+.+++|+++++++ |.+|.
T Consensus        32 ~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~  110 (357)
T 2uvk_A           32 AWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMA  110 (357)
T ss_dssp             CEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCS
T ss_pred             eEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-Ccccc
Confidence            68899997  48999999999 899999999999999999998 2   23345678999999999999999988 45899


Q ss_pred             eeEEEEeCCEEEEEecccCCCC-------------------------------CCCCceEEEEeCCCCcEEEcCCCCCCC
Q 020682          171 HLGVVSDGRYIYIVSGQYGPQC-------------------------------RGPTSRTFVLDSETRKWDSIPPLPSPR  219 (322)
Q Consensus       171 ~~~~~~~~~~Iyv~GG~~~~~~-------------------------------~~~~~~v~~yd~~t~~W~~~~~~p~~r  219 (322)
                      +|++++.+++|||+||.+....                               ...++++++||+.+++|+.++++|.+|
T Consensus       111 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~  190 (357)
T 2uvk_A          111 GHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG  190 (357)
T ss_dssp             SEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             cceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCC
Confidence            9999999999999999754310                               012589999999999999999999865


Q ss_pred             C-CcEEEEECCEEEEEeccCCCC-CCCCcceEeeeeeccccccCceEeccCCC--CCcCceeEEEECCEEEEEecCC
Q 020682          220 Y-SPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTEIPIP--RGGPHRACFVFNDRLFVVGGQE  292 (322)
Q Consensus       220 ~-~~~~~~~~~~Lyv~GG~~~~~-~~~~~~~~~~~v~~~~~~~~~W~~~~~~p--~~~~~~~~~~~~~~lyv~GG~~  292 (322)
                      . .|++++++++|||+||..... ..++++.     |++||++++|+.+.++|  +.+.++++++++++|||+||.+
T Consensus       191 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~-----~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~  262 (357)
T 2uvk_A          191 TAGAAVVNKGDKTWLINGEAKPGLRTDAVFE-----LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAG  262 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEEETTEECCCEEE-----EECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEE
T ss_pred             cccccEEEECCEEEEEeeecCCCcccCceEE-----EEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCcc
Confidence            5 499999999999999986432 2333433     44457899999998774  5566778999999999999964

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.97  E-value=2.4e-31  Score=243.96  Aligned_cols=188  Identities=17%  Similarity=0.213  Sum_probs=157.8

Q ss_pred             hhhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682           95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~  174 (322)
                      ..++++.||+.+++|+.++++|.+|.+|+++.++++|||+||........+++++||+.+++|+.++++|.  +|..|++
T Consensus       125 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~  202 (318)
T 2woz_A          125 SLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT--PRSMFGV  202 (318)
T ss_dssp             EEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS--CCBSCEE
T ss_pred             ccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC--CcccceE
Confidence            34589999999999999999999999999999999999999986666667889999999999999998887  7999999


Q ss_pred             EEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCC--cceEeee
Q 020682          175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG--LEHWSIA  252 (322)
Q Consensus       175 ~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~--~~~~~~~  252 (322)
                      ++.+++|||+||......   ++++++||+++++|+.++++|.+|..|+++.++++||++||.+.......  ......+
T Consensus       203 ~~~~~~iyv~GG~~~~~~---~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~  279 (318)
T 2woz_A          203 AIHKGKIVIAGGVTEDGL---SASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVND  279 (318)
T ss_dssp             EEETTEEEEEEEEETTEE---EEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred             EEECCEEEEEcCcCCCCc---cceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeee
Confidence            999999999999876543   68999999999999999999999999999999999999999865210000  0011122


Q ss_pred             eeccccccCceEeccCCCCCcCceeEEEECCEEEEEe
Q 020682          253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG  289 (322)
Q Consensus       253 v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~G  289 (322)
                      ++.||+++++|+.+  +|..+..+++++++++|||+.
T Consensus       280 v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          280 IWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLFK  314 (318)
T ss_dssp             EEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGGG
T ss_pred             EEEEeCCCCEehhh--cccccccccceeeCCEEEEEE
Confidence            44445779999999  566677778999999999975

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.97  E-value=2.5e-30  Score=240.58  Aligned_cols=196  Identities=16%  Similarity=0.268  Sum_probs=153.7

Q ss_pred             hhhhccccccCCCCEEECCCCC-CCCcccEEEEECCEEEEEeecCCCC--------------------------------
Q 020682           95 LSATFADLPAPDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD--------------------------------  141 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~--------------------------------  141 (322)
                      ..++++.||+.+++|+.+++|+ .+|..|+++.++++|||+||.+...                                
T Consensus        84 ~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (357)
T 2uvk_A           84 VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED  163 (357)
T ss_dssp             ECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred             eeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence            4458999999999999999998 8999999999999999999986432                                


Q ss_pred             -CCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeC--CCCcEEEcCCCCCC
Q 020682          142 -YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDSIPPLPSP  218 (322)
Q Consensus       142 -~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~  218 (322)
                       ...+++++||+.+++|+.++++|.+ +|.++++++.+++|||+||..+...  ...+++.||+  ++++|++++++|.+
T Consensus       164 ~~~~~~v~~yd~~~~~W~~~~~~p~~-~~~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~~d~d~~~~~W~~~~~~~~~  240 (357)
T 2uvk_A          164 YFFNKFLLSFDPSTQQWSYAGESPWY-GTAGAAVVNKGDKTWLINGEAKPGL--RTDAVFELDFTGNNLKWNKLAPVSSP  240 (357)
T ss_dssp             GCCCCEEEEEETTTTEEEEEEECSSC-CCBSCEEEEETTEEEEECCEEETTE--ECCCEEEEECC---CEEEECCCSSTT
T ss_pred             cCCcccEEEEeCCCCcEEECCCCCCC-CcccccEEEECCEEEEEeeecCCCc--ccCceEEEEecCCCCcEEecCCCCCC
Confidence             2457899999999999999988874 4566999999999999999875542  2588999986  99999999988665


Q ss_pred             --CCCcEEEEECCEEEEEeccCCCC------------CCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCE
Q 020682          219 --RYSPATQLWRGRLHVMGGSKENR------------HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR  284 (322)
Q Consensus       219 --r~~~~~~~~~~~Lyv~GG~~~~~------------~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  284 (322)
                        |..|++++++++|||+||.+...            ........+  ++.||+++++|+.++++|.++..+++++++++
T Consensus       241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~  318 (357)
T 2uvk_A          241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS--TDIHLWHNGKWDKSGELSQGRAYGVSLPWNNS  318 (357)
T ss_dssp             TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEEC--CEEEECC---CEEEEECSSCCBSSEEEEETTE
T ss_pred             cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceee--EEEEecCCCceeeCCCCCCCcccceeEEeCCE
Confidence              55788999999999999975321            011111222  23334669999999999999988899999999


Q ss_pred             EEEEecCCCCC
Q 020682          285 LFVVGGQEGDF  295 (322)
Q Consensus       285 lyv~GG~~~~~  295 (322)
                      |||+||.++..
T Consensus       319 i~v~GG~~~~~  329 (357)
T 2uvk_A          319 LLIIGGETAGG  329 (357)
T ss_dssp             EEEEEEECGGG
T ss_pred             EEEEeeeCCCC
Confidence            99999987543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=2.1e-28  Score=247.46  Aligned_cols=196  Identities=11%  Similarity=0.104  Sum_probs=165.1

Q ss_pred             hhhhccccccCCCCEEECC-C-----CCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCC
Q 020682           95 LSATFADLPAPDLEWEQMP-S-----APVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD  166 (322)
Q Consensus        95 ~~~~~~~yd~~~~~W~~~~-~-----~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p  166 (322)
                      ..++++.||+.+++|+.++ +     +|.+|.+|+++.+  +++|||+||.+......+++|+||+.+++|+.++++|. 
T Consensus       410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-  488 (695)
T 2zwa_A          410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-  488 (695)
T ss_dssp             BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-
T ss_pred             CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-
Confidence            3457999999999999998 5     7899999999999  99999999998766567889999999999999999987 


Q ss_pred             CCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEEEC---CEEEEEeccCC
Q 020682          167 MAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWR---GRLHVMGGSKE  239 (322)
Q Consensus       167 ~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~---~~Lyv~GG~~~  239 (322)
                       +|.+|+++++ +++|||+||.+...      ++++||+.+++|+.+++   +|.+|.+|++++++   ++|||+||...
T Consensus       489 -~R~~h~~~~~~~~~iyv~GG~~~~~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~  561 (695)
T 2zwa_A          489 -TRFRHSACSLPDGNVLILGGVTEGP------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM  561 (695)
T ss_dssp             -CCBSCEEEECTTSCEEEECCBCSSC------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCT
T ss_pred             -CcccceEEEEcCCEEEEECCCCCCC------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCC
Confidence             8999999996 99999999986532      89999999999999986   89999999988877   89999999854


Q ss_pred             C--CCCCCcceEeeeeeccccccCc------eEeccCC-CCCcCceeEEEEC-CEEEEEecCCCC---------CCCCCC
Q 020682          240 N--RHTPGLEHWSIAVKDGKALEKA------WRTEIPI-PRGGPHRACFVFN-DRLFVVGGQEGD---------FMAKPG  300 (322)
Q Consensus       240 ~--~~~~~~~~~~~~v~~~~~~~~~------W~~~~~~-p~~~~~~~~~~~~-~~lyv~GG~~~~---------~~~~p~  300 (322)
                      .  ...+++++|+       +.+++      |+.+.++ +.++.++++++++ ++|||+||.++.         ..|+|.
T Consensus       562 ~~~~~~~~v~~yd-------~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          562 DQTTVSDKAIIFK-------YDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             TSSCBCCEEEEEE-------ECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             CCCeeeCcEEEEE-------ccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            3  3455566665       55888      8888765 4677777889999 999999997543         246777


Q ss_pred             CCeee
Q 020682          301 SPIFK  305 (322)
Q Consensus       301 ~~~~~  305 (322)
                      ...|.
T Consensus       635 t~~W~  639 (695)
T 2zwa_A          635 SETLT  639 (695)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            66665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.93  E-value=1.3e-25  Score=226.99  Aligned_cols=171  Identities=15%  Similarity=0.250  Sum_probs=140.1

Q ss_pred             CEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECC-CCC---CCCCCceeEEEEe--CCEE
Q 020682          108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-DMP---KDMAHSHLGVVSD--GRYI  181 (322)
Q Consensus       108 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~---~p~~r~~~~~~~~--~~~I  181 (322)
                      +|...+..|.+|.+++ ++++++|||+||.+.  ...+++++||+.+++|+.++ ++|   .|.+|.+|+++++  +++|
T Consensus       378 ~~~~~~~~p~rr~g~~-~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l  454 (695)
T 2zwa_A          378 QLLECECPINRKFGDV-DVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL  454 (695)
T ss_dssp             EEEECCCTTCCBSCEE-EECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred             eEeccCCCCCCceeEE-EEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence            4555555566666554 448999999999876  45678999999999999988 632   2348999999999  9999


Q ss_pred             EEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEeccCCCCCCCCcceEeeeeecccccc
Q 020682          182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE  260 (322)
Q Consensus       182 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~  260 (322)
                      ||+||..+...  .++++++||+.+++|+.++++|.+|..|+++++ +++|||+||.+...   ++++|       |+.+
T Consensus       455 yv~GG~~~~~~--~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~y-------d~~t  522 (695)
T 2zwa_A          455 LLIGGRKAPHQ--GLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLY-------NVTE  522 (695)
T ss_dssp             EEECCBSSTTC--BCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEE-------ETTT
T ss_pred             EEEcCCCCCCC--ccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEE-------ECCC
Confidence            99999876542  268999999999999999999999999999997 99999999986543   34444       4779


Q ss_pred             CceEeccC---CCCCcCceeEEEEC---CEEEEEecCCC
Q 020682          261 KAWRTEIP---IPRGGPHRACFVFN---DRLFVVGGQEG  293 (322)
Q Consensus       261 ~~W~~~~~---~p~~~~~~~~~~~~---~~lyv~GG~~~  293 (322)
                      ++|+.+.+   +|.++.++++++++   ++|||+||.+.
T Consensus       523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~  561 (695)
T 2zwa_A          523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM  561 (695)
T ss_dssp             TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCT
T ss_pred             CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCC
Confidence            99999876   88888888877777   99999999853

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.92  E-value=2.1e-24  Score=216.90  Aligned_cols=188  Identities=14%  Similarity=0.103  Sum_probs=147.7

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECC-----CCCCC-----
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-----DMPKD-----  166 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-----~~~~p-----  166 (322)
                      +++.||+.+++|+.+++||.+|..|+++.+ +++|||+||........+++++||+++++|+.++     +++..     
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~  345 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL  345 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence            689999999999999999999999999999 9999999996444445678999999999999863     33221     


Q ss_pred             --------------------------------------------------CCCceeEEEE---eCCEEEEEecccCCCCC
Q 020682          167 --------------------------------------------------MAHSHLGVVS---DGRYIYIVSGQYGPQCR  193 (322)
Q Consensus       167 --------------------------------------------------~~r~~~~~~~---~~~~Iyv~GG~~~~~~~  193 (322)
                                                                        .++..++++.   .+++|||+||.......
T Consensus       346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~  425 (656)
T 1k3i_A          346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  425 (656)
T ss_dssp             GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence                                                              0112233332   48999999997532211


Q ss_pred             CCCc---eEEEEeCCCCcEEEcC--CCCCCCCCcEEEEE-CCEEEEEeccCCC------CCCCCcceEeeeeeccccccC
Q 020682          194 GPTS---RTFVLDSETRKWDSIP--PLPSPRYSPATQLW-RGRLHVMGGSKEN------RHTPGLEHWSIAVKDGKALEK  261 (322)
Q Consensus       194 ~~~~---~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~-~~~Lyv~GG~~~~------~~~~~~~~~~~~v~~~~~~~~  261 (322)
                      ..++   ++++||+.+++|.++.  +||.+|..|.++++ +++|||+||.+..      ....++++||       |.++
T Consensus       426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd-------p~t~  498 (656)
T 1k3i_A          426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV-------PEQD  498 (656)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE-------GGGT
T ss_pred             CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc-------CCCC
Confidence            1134   8999999999999986  99999999998888 9999999997532      2234444444       6799


Q ss_pred             ceEeccCCCCCcCceeEEEE--CCEEEEEecCC
Q 020682          262 AWRTEIPIPRGGPHRACFVF--NDRLFVVGGQE  292 (322)
Q Consensus       262 ~W~~~~~~p~~~~~~~~~~~--~~~lyv~GG~~  292 (322)
                      +|+.+.++|.+|..|+++++  +++|||+||..
T Consensus       499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~  531 (656)
T 1k3i_A          499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL  531 (656)
T ss_dssp             EEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             ceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence            99999999988888888887  99999999953

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.90  E-value=1.2e-23  Score=211.25  Aligned_cols=180  Identities=16%  Similarity=0.228  Sum_probs=144.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCC-----CCcceeEEEECCCCceEECCCCCCCCCCc
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMAHS  170 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~~~~p~~r~  170 (322)
                      .+..||+.+++|+.++++|.  ..+.++++  +++|||+||.+...     ....++++||+.+++|+.++.++.+..+.
T Consensus       167 ~~~~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~  244 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF  244 (656)
T ss_dssp             CCCCCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred             ccccCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence            46789999999999887754  66666766  99999999985432     12347999999999999998887743334


Q ss_pred             eeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEecc-CCCCCCCCcc
Q 020682          171 HLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGS-KENRHTPGLE  247 (322)
Q Consensus       171 ~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~GG~-~~~~~~~~~~  247 (322)
                      ++++++ .+++||++||...       .++++||+.+++|+++++||.+|..|+++++ +|+|||+||. ++....++++
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~-------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e  317 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE  317 (656)
T ss_dssp             SCEEEECTTSCEEEECSSST-------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred             cccccCCCCCCEEEeCCCCC-------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccce
Confidence            444554 5899999999753       3799999999999999999999999999999 9999999994 5444566666


Q ss_pred             eEeeeeeccccccCceEec-----cCCCCCcCceeEEEECCEEEEEecCCCC
Q 020682          248 HWSIAVKDGKALEKAWRTE-----IPIPRGGPHRACFVFNDRLFVVGGQEGD  294 (322)
Q Consensus       248 ~~~~~v~~~~~~~~~W~~~-----~~~p~~~~~~~~~~~~~~lyv~GG~~~~  294 (322)
                      +||       |.+++|+.+     .+++..+.. +++..++++|++||.++.
T Consensus       318 ~yd-------~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~  361 (656)
T 1k3i_A          318 VYS-------PSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGS  361 (656)
T ss_dssp             EEE-------TTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGC
T ss_pred             EeC-------CCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCc
Confidence            666       669999997     567777654 667789999999998765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.29  E-value=0.0062  Score=52.98  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=72.8

Q ss_pred             ccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEE
Q 020682          121 DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF  200 (322)
Q Consensus       121 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~  200 (322)
                      -+.+...++.||+-.|..+.    +.+.++|+++.+=....+++.  ...+.+++..+++||+....        .+.++
T Consensus        23 tqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~--------~~~v~   88 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWR--------NHEGF   88 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESS--------SSEEE
T ss_pred             cccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEee--------CCEEE
Confidence            44667778999999996544    368899999988766555554  44677888899999998643        47899


Q ss_pred             EEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEec
Q 020682          201 VLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG  236 (322)
Q Consensus       201 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG  236 (322)
                      +||++|.+-..  .++.+..+.+++..+++||+--|
T Consensus        89 v~D~~tl~~~~--ti~~~~~Gwglt~dg~~L~vSdg  122 (243)
T 3mbr_X           89 VYDLATLTPRA--RFRYPGEGWALTSDDSHLYMSDG  122 (243)
T ss_dssp             EEETTTTEEEE--EEECSSCCCEEEECSSCEEEECS
T ss_pred             EEECCcCcEEE--EEeCCCCceEEeeCCCEEEEECC
Confidence            99998876433  22333356677776778998765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.14  E-value=0.0031  Score=54.93  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCC
Q 020682          163 MPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH  242 (322)
Q Consensus       163 ~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~  242 (322)
                      .|++..-.-.+..+.++.+|+-.|..+      .+.+..+|+++++=..--+++..-++.+++..+++||+.....    
T Consensus        15 ~phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~----   84 (243)
T 3mbr_X           15 YPHDTTAFTEGLFYLRGHLYESTGETG------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN----   84 (243)
T ss_dssp             EECCTTCCEEEEEEETTEEEEEECCTT------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS----
T ss_pred             cCCCCccccccEEEECCEEEEECCCCC------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC----
Confidence            344324456678888999999998754      3789999999998776666766667778889999999986543    


Q ss_pred             CCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       243 ~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                       +.+..||       +  ..-+.+..++.+..+.+++.-+++||+--|.+...++||.+
T Consensus        85 -~~v~v~D-------~--~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t  133 (243)
T 3mbr_X           85 -HEGFVYD-------L--ATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDT  133 (243)
T ss_dssp             -SEEEEEE-------T--TTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTT
T ss_pred             -CEEEEEE-------C--CcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCC
Confidence             2345555       2  23334433333344557777788899999866666788876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.87  E-value=0.009  Score=52.50  Aligned_cols=99  Identities=12%  Similarity=0.045  Sum_probs=69.1

Q ss_pred             cEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020682          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV  201 (322)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~  201 (322)
                      .++...++.||+-.|..+.    +.+.++|+++.+=....+++.  .-.+.+++..+++||+....        .+.+++
T Consensus        46 qGL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~--------~~~v~v  111 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWK--------NGLGFV  111 (262)
T ss_dssp             EEEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESS--------SSEEEE
T ss_pred             ceEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEee--------CCEEEE
Confidence            4455558999999996543    368899999988655444543  34667788899999998653        378999


Q ss_pred             EeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEec
Q 020682          202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG  236 (322)
Q Consensus       202 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG  236 (322)
                      ||++|.+-..  .++.+-.+.+++..+++||+.-|
T Consensus       112 ~D~~t~~~~~--ti~~~~eG~glt~dg~~L~~SdG  144 (262)
T 3nol_A          112 WNIRNLRQVR--SFNYDGEGWGLTHNDQYLIMSDG  144 (262)
T ss_dssp             EETTTCCEEE--EEECSSCCCCEEECSSCEEECCS
T ss_pred             EECccCcEEE--EEECCCCceEEecCCCEEEEECC
Confidence            9999877432  22223355566666677888755

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.53  E-value=0.0062  Score=53.51  Aligned_cols=112  Identities=15%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceE
Q 020682          170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW  249 (322)
Q Consensus       170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~  249 (322)
                      +..+..+.++.+|+..|..+      .+.+..+|++|.+=..--+++..-++.+++..+++||+.....     +.+..|
T Consensus        44 ftqGL~~~~~~LyestG~~g------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v~  112 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNG------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVW  112 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETT------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEE
T ss_pred             ccceEEEECCEEEEECCCCC------CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEEE
Confidence            44566777999999999754      3688999999998665555655555667888999999986542     234555


Q ss_pred             eeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       250 ~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                      |       +++.+  .+..++-+..+.+++.-+++||+.-|.+...++||.+
T Consensus       113 D-------~~t~~--~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T  155 (262)
T 3nol_A          113 N-------IRNLR--QVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPES  155 (262)
T ss_dssp             E-------TTTCC--EEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTT
T ss_pred             E-------CccCc--EEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCC
Confidence            5       33433  3333333334447777788899998855556678876

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.33  E-value=0.036  Score=48.71  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=67.6

Q ss_pred             cEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020682          122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV  201 (322)
Q Consensus       122 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~  201 (322)
                      .++...++.||+..|..+      .+.++|+++.+=.... ++.  .-.+.+++..+++||+....        .+.+++
T Consensus        58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~Ly~ltw~--------~~~v~V  120 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLG--NIFAEGLASDGERLYQLTWT--------EGLLFT  120 (268)
T ss_dssp             EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSCEEEEESS--------SCEEEE
T ss_pred             ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCEEEEEEcc--------CCEEEE
Confidence            455666899999999542      3888999987754433 443  34566788899999998653        378999


Q ss_pred             EeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEec
Q 020682          202 LDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG  236 (322)
Q Consensus       202 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG  236 (322)
                      ||++|.+-..-  ++.+-.+.+++..+++||+.-|
T Consensus       121 ~D~~Tl~~~~t--i~~~~eGwGLt~Dg~~L~vSdG  153 (268)
T 3nok_A          121 WSGMPPQRERT--TRYSGEGWGLCYWNGKLVRSDG  153 (268)
T ss_dssp             EETTTTEEEEE--EECSSCCCCEEEETTEEEEECS
T ss_pred             EECCcCcEEEE--EeCCCceeEEecCCCEEEEECC
Confidence            99998764432  2223345677777888999865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.05  E-value=0.25  Score=44.60  Aligned_cols=172  Identities=17%  Similarity=0.190  Sum_probs=90.4

Q ss_pred             hccccccCCC--CEEECCCCC-------CCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCC
Q 020682           98 TFADLPAPDL--EWEQMPSAP-------VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKD  166 (322)
Q Consensus        98 ~~~~yd~~~~--~W~~~~~~p-------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p  166 (322)
                      .+..||..+.  .|+.-....       ........+..++.||+....       ..++++|.++.+  |+.-....  
T Consensus        64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~--  134 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKVAGE--  134 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEECSSC--
T ss_pred             eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeCCCc--
Confidence            5678887655  576543221       112233445668899986532       368999988654  76532211  


Q ss_pred             CCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCC--CCCCcEEEEECCEEEEEeccCCCCC
Q 020682          167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVMGGSKENRH  242 (322)
Q Consensus       167 ~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~Lyv~GG~~~~~~  242 (322)
                         .....++.++.||+..+         ...++.||+++.+  |+.-...+.  .+.....+..++.+|+ |..++   
T Consensus       135 ---~~~~p~~~~~~v~v~~~---------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~~g---  198 (376)
T 3q7m_A          135 ---ALSRPVVSDGLVLIHTS---------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV-GGDNG---  198 (376)
T ss_dssp             ---CCSCCEEETTEEEEECT---------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-CCTTT---
T ss_pred             ---eEcCCEEECCEEEEEcC---------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-EcCCC---
Confidence               11223456888888543         2679999998875  876543222  1223344556787776 32211   


Q ss_pred             CCCcceEeeeeeccccccCceEeccCCCCCc--------CceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGG--------PHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       243 ~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                        .+..++.+     ..+..|+.....|...        .....++.++.+|+.+.......+++.+
T Consensus       199 --~l~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t  258 (376)
T 3q7m_A          199 --RVSAVLME-----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS  258 (376)
T ss_dssp             --EEEEEETT-----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred             --EEEEEECC-----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence              23344321     3345677654333211        1123456678888766433333455533

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.01  E-value=0.28  Score=43.75  Aligned_cols=120  Identities=11%  Similarity=0.042  Sum_probs=72.8

Q ss_pred             hhccccccCCCCEEEC-----CCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceE-ECCCCCCCCCCc
Q 020682           97 ATFADLPAPDLEWEQM-----PSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-DRFDMPKDMAHS  170 (322)
Q Consensus        97 ~~~~~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~p~~r~  170 (322)
                      .++..+|+.+.+...-     ...+.......++..++++|+....      .+.+.++|+++.+-. .++...     .
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~~~~-----~   85 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRITGFT-----S   85 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEECCS-----S
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcCCCC-----C
Confidence            3567778877766532     1122333345566789999999763      146999999987753 332222     2


Q ss_pred             eeEEEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCC----CCCCcEEEEECCEEEEEe
Q 020682          171 HLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS----PRYSPATQLWRGRLHVMG  235 (322)
Q Consensus       171 ~~~~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~~~~~~~~~~~Lyv~G  235 (322)
                      ...+++ .++++|+....        ...+.++|+++.+-...-+...    ...-..++..+++||+..
T Consensus        86 p~~i~~~~~g~lyv~~~~--------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~  147 (328)
T 3dsm_A           86 PRYIHFLSDEKAYVTQIW--------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNC  147 (328)
T ss_dssp             EEEEEEEETTEEEEEEBS--------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEE
T ss_pred             CcEEEEeCCCeEEEEECC--------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEc
Confidence            334555 67899998742        3789999999987543211111    002224455788999884

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.91  E-value=0.21  Score=43.90  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=64.1

Q ss_pred             cEEEEEC-CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEE
Q 020682          122 GAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF  200 (322)
Q Consensus       122 ~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~  200 (322)
                      +.+...+ +.||+..|..+.    +.+.++|+++.+=...-+++.  .....+++..+++||+..-.        .+.++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~----s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~lyv~t~~--------~~~v~   89 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGR----SSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEKLYQVVWL--------KNIGF   89 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTT----CEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEETT--------CSEEE
T ss_pred             ccEEEeCCCeEEEECCCCCC----CEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCEEEEEEec--------CCEEE
Confidence            4555555 799999874322    469999999888655333432  33556788889999998642        37899


Q ss_pred             EEeCCCCcEEEcCCCCCC-CCCcEEEEECCEEEEEec
Q 020682          201 VLDSETRKWDSIPPLPSP-RYSPATQLWRGRLHVMGG  236 (322)
Q Consensus       201 ~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~Lyv~GG  236 (322)
                      +||++|.+=..  .+|.+ ..+.+++.-+++||+.-|
T Consensus        90 viD~~t~~v~~--~i~~g~~~g~glt~Dg~~l~vs~g  124 (266)
T 2iwa_A           90 IYDRRTLSNIK--NFTHQMKDGWGLATDGKILYGSDG  124 (266)
T ss_dssp             EEETTTTEEEE--EEECCSSSCCEEEECSSSEEEECS
T ss_pred             EEECCCCcEEE--EEECCCCCeEEEEECCCEEEEECC
Confidence            99999865322  22222 234455555667998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.86  E-value=0.038  Score=48.66  Aligned_cols=111  Identities=13%  Similarity=0.057  Sum_probs=70.3

Q ss_pred             eeEEEEeC-CEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceE
Q 020682          171 HLGVVSDG-RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW  249 (322)
Q Consensus       171 ~~~~~~~~-~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~  249 (322)
                      -+++++.+ +.+|+..|..+      .+.+.++|++|++=...-+++......+++..+++||+..-.     .+.+..+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~vi   91 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYG------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIY   91 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTT------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCC------CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEE
Confidence            46777775 89999887432      378999999999865544444444555677888999998543     2235555


Q ss_pred             eeeeeccccccCceEeccCCCCC-cCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          250 SIAVKDGKALEKAWRTEIPIPRG-GPHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       250 ~~~v~~~~~~~~~W~~~~~~p~~-~~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                      |       +.+.  +.+..+|.+ ..+.+++.-++++|+..|.+...+++|.+
T Consensus        92 D-------~~t~--~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t  135 (266)
T 2iwa_A           92 D-------RRTL--SNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHT  135 (266)
T ss_dssp             E-------TTTT--EEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred             E-------CCCC--cEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence            5       2232  333323222 33335666677899988755555677766

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.81  E-value=0.37  Score=42.91  Aligned_cols=181  Identities=12%  Similarity=0.043  Sum_probs=92.2

Q ss_pred             hhccccccCCCCEEECCCCCCC----CcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCcee
Q 020682           97 ATFADLPAPDLEWEQMPSAPVP----RLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (322)
Q Consensus        97 ~~~~~yd~~~~~W~~~~~~p~~----r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~  172 (322)
                      ..+..+|+.+.+-...-+....    ..-..++..+++|||..- .    ..+.+.++|+++.+....-+...    .-.
T Consensus       105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~----~p~  175 (328)
T 3dsm_A          105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGI----QPT  175 (328)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSS----CBC
T ss_pred             CeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCC----Ccc
Confidence            4577888877654321111110    022234447899999852 0    12469999999887654222211    112


Q ss_pred             EEEEe-CCEEEEEecccCCC--CCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcc
Q 020682          173 GVVSD-GRYIYIVSGQYGPQ--CRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLE  247 (322)
Q Consensus       173 ~~~~~-~~~Iyv~GG~~~~~--~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~  247 (322)
                      .+++. ++++|+........  .......+.++|+++.+....-.++....-..++.-  ++.||+..+        .+.
T Consensus       176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--------~v~  247 (328)
T 3dsm_A          176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--------DIW  247 (328)
T ss_dssp             CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--------SEE
T ss_pred             ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--------EEE
Confidence            33333 68888875322111  000137899999999886643333332222344444  456888643        244


Q ss_pred             eEeeeeeccccccCceEeccCCCC-CcCceeEEE--ECCEEEEEe----cCC-CCCCCCCCC
Q 020682          248 HWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFV--FNDRLFVVG----GQE-GDFMAKPGS  301 (322)
Q Consensus       248 ~~~~~v~~~~~~~~~W~~~~~~p~-~~~~~~~~~--~~~~lyv~G----G~~-~~~~~~p~~  301 (322)
                      .++       +.+.+.....-++. ...-.++++  .+++|||..    ..+ ...+|++..
T Consensus       248 ~~d-------~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          248 RMP-------VEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             EEE-------TTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             EEE-------CCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence            444       44554422222222 122223444  378899997    222 234566663

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.34  E-value=0.97  Score=40.59  Aligned_cols=169  Identities=12%  Similarity=0.184  Sum_probs=89.7

Q ss_pred             hccccccCCC--CEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCCCCCceeE
Q 020682           98 TFADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p~~r~~~~  173 (322)
                      .+..+|..+.  .|+.-.+-.   .....+..++.||+..+.       ..++.||+++.+  |+.-...+....+....
T Consensus       114 ~l~a~d~~tG~~~W~~~~~~~---~~~~p~~~~~~v~v~~~~-------g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~  183 (376)
T 3q7m_A          114 QVYALNTSDGTVAWQTKVAGE---ALSRPVVSDGLVLIHTSN-------GQLQALNEADGAVKWTVNLDMPSLSLRGESA  183 (376)
T ss_dssp             EEEEEETTTCCEEEEEECSSC---CCSCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred             EEEEEECCCCCEEEEEeCCCc---eEcCCEEECCEEEEEcCC-------CeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence            4777887655  476543211   122224458888885431       358999987654  87643322110122234


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCCCC--------CCcEEEEECCEEEEEeccCCCCCC
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHT  243 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~~~Lyv~GG~~~~~~~  243 (322)
                      .++.++.||+...         ...+..||+++.+  |+.-...|...        .....++.++.||+.+. +     
T Consensus       184 ~~~~~~~v~~g~~---------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~-----  248 (376)
T 3q7m_A          184 PTTAFGAAVVGGD---------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-N-----  248 (376)
T ss_dssp             CEEETTEEEECCT---------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-T-----
T ss_pred             cEEECCEEEEEcC---------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-C-----
Confidence            4556888877321         2578899988764  77653322211        12334566888887642 1     


Q ss_pred             CCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          244 PGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       244 ~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                      ..+..++.+     ..+..|+....  .   ....++.++.||+.........+++.+
T Consensus       249 g~l~~~d~~-----tG~~~w~~~~~--~---~~~~~~~~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          249 GNLTALDLR-----SGQIMWKRELG--S---VNDFIVDGNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             SCEEEEETT-----TCCEEEEECCC--C---EEEEEEETTEEEEEETTCCEEEEETTT
T ss_pred             cEEEEEECC-----CCcEEeeccCC--C---CCCceEECCEEEEEcCCCeEEEEECCC
Confidence            124444432     23445765422  1   124566788888887544444455443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.25  E-value=0.052  Score=47.70  Aligned_cols=109  Identities=15%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             ceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceE
Q 020682          170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW  249 (322)
Q Consensus       170 ~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~  249 (322)
                      +..+..+.++.||+..|..        ..+..+|++|.+=..-- ++..-++.+++..+++||+.....     +.+..|
T Consensus        56 ftqGL~~~~~~Ly~stG~~--------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-----~~v~V~  121 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQ--------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-----GLLFTW  121 (268)
T ss_dssp             CEEEEEEETTEEEEEETTT--------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-----CEEEEE
T ss_pred             ccceEEEECCEEEEEcCCC--------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-----CEEEEE
Confidence            4467777899999999863        34889999988743323 555445566888899999986542     234555


Q ss_pred             eeeeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          250 SIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       250 ~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                      |       +++.+  .+..++-...+.+++.-+++||+.-|.+...++||.+
T Consensus       122 D-------~~Tl~--~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T  164 (268)
T 3nok_A          122 S-------GMPPQ--RERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDG  164 (268)
T ss_dssp             E-------TTTTE--EEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTT
T ss_pred             E-------CCcCc--EEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCC
Confidence            5       22333  3333332333457778899999999866566778876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.21  E-value=0.16  Score=47.14  Aligned_cols=196  Identities=10%  Similarity=0.008  Sum_probs=92.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..+|..+.+...+...+.  .....+..  +.+|++.+..++.    ..++++|+.+.+...+.....    .....+
T Consensus       204 ~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g~----~~i~~~d~~~~~~~~l~~~~~----~~~~~~  273 (415)
T 2hqs_A          204 ALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDGRS----NNTEPT  273 (415)
T ss_dssp             EEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTSS----CEEEEEETTTCCEEECCCCSS----CEEEEE
T ss_pred             EEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCCC----ceEEEEECCCCCEEeCcCCCC----cccceE
Confidence            46667776666655543322  11111111  3445545543322    359999999887766544332    122333


Q ss_pred             Ee-CCE-EEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEE-EECCEEEEEeccCCCCCCCCcceEeee
Q 020682          176 SD-GRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       176 ~~-~~~-Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      .. +++ |++.+..++      ...++.+|..+.+-..+...  .......+ .-+++.+++++....  ...+..|+  
T Consensus       274 ~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d--  341 (415)
T 2hqs_A          274 WFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQD--  341 (415)
T ss_dssp             ECTTSSEEEEEECTTS------SCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEE--
T ss_pred             ECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcCC--ceEEEEEE--
Confidence            32 444 544432211      35899999988775554321  11111111 225554555443211  12244444  


Q ss_pred             eeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCCC----CCCCCCCCeeeeeEeeceeEeeeeeeeC
Q 020682          253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGD----FMAKPGSPIFKCSRRHEFMVMFICWMMK  322 (322)
Q Consensus       253 v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~----~~~~p~~~~~~~~~~~e~~~~~~~~~~~  322 (322)
                           ..+.+...+..-.  ........-+++.+++++.++.    ..++...........++--..+++|-.|
T Consensus       342 -----~~~~~~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          342 -----LATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             -----TTTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             -----CCCCCEEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence                 3466665543322  1111222235666666655442    2344444333333344444578888543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.14  E-value=0.082  Score=47.70  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +..||+.++.+      ..+.++|..+.+-........    .-.+++..  ++.||+.+..        -..+.+||+.
T Consensus        43 g~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~--------~~~v~v~d~~  104 (391)
T 1l0q_A           43 GTKVYVANAHS------NDVSIIDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMA--------SSTLSVIDTT  104 (391)
T ss_dssp             SSEEEEEEGGG------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT--------TTEEEEEETT
T ss_pred             CCEEEEECCCC------CeEEEEECCCCeEEEEEECCC----CccceEECCCCCEEEEEECC--------CCEEEEEECC
Confidence            45677777543      368999998776544322221    22344443  5567776542        2678999999


Q ss_pred             CCcEEEcCCCCCCCCCcEEEEE-CC-EEEEEeccCCCCCCCCcceEee
Q 020682          206 TRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       206 t~~W~~~~~~p~~r~~~~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +++-...-....  .-..++.. ++ .||+.++.++     .+..|++
T Consensus       105 ~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~-----~v~~~d~  145 (391)
T 1l0q_A          105 SNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDK-----TVSVINT  145 (391)
T ss_dssp             TTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTT-----EEEEEET
T ss_pred             CCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCC-----EEEEEEC
Confidence            887554422211  11223322 33 5777765432     3556654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.41  Score=42.35  Aligned_cols=172  Identities=10%  Similarity=0.074  Sum_probs=83.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--C--CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      .+..||....++..+..+.........+..  .  +.+++.|+.+      ..+.+||..+.+|..+..+... ...-.+
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~-~~~v~~  106 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAVH-SASVNS  106 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred             cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCCceeEeeeecCC-CcceEE
Confidence            345555544444444333322222222233  2  5667777754      2478889998887665544421 122233


Q ss_pred             EEEe-C--CEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE---------------CCEEEEEe
Q 020682          174 VVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW---------------RGRLHVMG  235 (322)
Q Consensus       174 ~~~~-~--~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---------------~~~Lyv~G  235 (322)
                      ++.. +  +.+++.|+.+        ..+..||..+..-...-.+.........+.+               ++.+++.|
T Consensus       107 ~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (379)
T 3jrp_A          107 VQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  178 (379)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred             EEeCCCCCCCEEEEecCC--------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence            4443 2  4566666642        5677888876531111000000111111222               46777788


Q ss_pred             ccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEE--EC---CEEEEEecCCCC
Q 020682          236 GSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV--FN---DRLFVVGGQEGD  294 (322)
Q Consensus       236 G~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~--~~---~~lyv~GG~~~~  294 (322)
                      +.++     .+..|++.     .....+..+..+.........+.  -+   +++++.|+.++.
T Consensus       179 ~~dg-----~i~i~d~~-----~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          179 GADN-----LVKIWKYN-----SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             ETTS-----CEEEEEEE-----TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             eCCC-----eEEEEEec-----CCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence            7654     36677754     22334544433332111112222  23   688888887765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.23  E-value=0.14  Score=46.11  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..+|..+.+-...-..+  ..-..++..  ++.||+.+..+      ..+.+||+.+.+-.......    ....+++
T Consensus        55 ~i~v~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~----~~~~~~~  122 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPAG--SSPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTG----KSPLGLA  122 (391)
T ss_dssp             EEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECS----SSEEEEE
T ss_pred             eEEEEECCCCeEEEEEECC--CCccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCC----CCcceEE
Confidence            5667777665443322221  111222222  45566665432      35899999987654432222    1223444


Q ss_pred             Ee--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CC-EEEEEeccCCCCCCCCcceEee
Q 020682          176 SD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       176 ~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ..  +..||+.++.        -..+..||+.+.+....-....  .-..++.. ++ .||+.++.+     ..+..|++
T Consensus       123 ~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~  187 (391)
T 1l0q_A          123 LSPDGKKLYVTNNG--------DKTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFDS-----MSISVIDT  187 (391)
T ss_dssp             ECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred             ECCCCCEEEEEeCC--------CCEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEEEEEeCCC-----CEEEEEEC
Confidence            44  4567777653        2678999999887654422211  11222222 33 576766543     23556654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.10  E-value=1  Score=39.65  Aligned_cols=105  Identities=13%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.+      ..+.+||..+.++..+..+... ...-.+++.. ++.+++.|+.+        ..+..||..+
T Consensus        19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC--------CeEEEEECCC
Confidence            45566666642      3688899998877665544321 1222333443 55566666642        4677888888


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEeee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      .++.....+.........+.+  ++++++.|+.++     .+..|+++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~  126 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFE  126 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEE
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEec
Confidence            887655432222222223333  456777777543     36667654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=92.71  E-value=2.5  Score=36.87  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCC-CCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p-~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~  204 (322)
                      ++.+|+...       ...+.++|+.+.+-......... ......++++.  ++.+|+....        ...+..||+
T Consensus       196 g~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~~v~~~d~  260 (353)
T 3vgz_A          196 GKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--------AAEVLVVDT  260 (353)
T ss_dssp             TTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--------SSEEEEEET
T ss_pred             CCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--------CCEEEEEEC
Confidence            456777643       13688999987764332222110 02222334444  5678876531        378999999


Q ss_pred             CCCcEEEcCCCCCCCCCcEEEEEC-CEEEEEeccCCCCCCCCcceEe
Q 020682          205 ETRKWDSIPPLPSPRYSPATQLWR-GRLHVMGGSKENRHTPGLEHWS  250 (322)
Q Consensus       205 ~t~~W~~~~~~p~~r~~~~~~~~~-~~Lyv~GG~~~~~~~~~~~~~~  250 (322)
                      .+.+-...-+.+.+.  ..+..-+ +.||+.+..+     ..+..|+
T Consensus       261 ~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~~-----~~v~~~d  300 (353)
T 3vgz_A          261 RNGNILAKVAAPESL--AVLFNPARNEAYVTHRQA-----GKVSVID  300 (353)
T ss_dssp             TTCCEEEEEECSSCC--CEEEETTTTEEEEEETTT-----TEEEEEE
T ss_pred             CCCcEEEEEEcCCCc--eEEECCCCCEEEEEECCC-----CeEEEEE
Confidence            988765443333331  2222223 4578765432     2355555

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=92.26  E-value=0.92  Score=45.41  Aligned_cols=95  Identities=8%  Similarity=0.034  Sum_probs=51.9

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--C--CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      .+..||....++..+..+......-..+..  .  +..++.|+.+      ..+.+||..+.+|..+..+... ...-.+
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~~~~~~~~~~~h-~~~V~~  104 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAVH-SASVNS  104 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred             cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCCcccccccccCC-CCCeEE
Confidence            355566555555554444333222222333  2  5677777754      2478889888887665544321 122233


Q ss_pred             EEEe-C--CEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          174 VVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       174 ~~~~-~--~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      ++.. +  +.+++.|+.+        ..+..||..+.
T Consensus       105 v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~  133 (753)
T 3jro_A          105 VQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  133 (753)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCSS
T ss_pred             EEECCCCCCCEEEEEeCC--------CcEEEEEeecC
Confidence            3333 3  5677777643        56778887765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.99  E-value=1.4  Score=39.92  Aligned_cols=98  Identities=10%  Similarity=0.010  Sum_probs=56.0

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC---CCCCCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP---KDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~---~p~~r~~~~  173 (322)
                      .++.+|+.+.+++.+..++.+....+++.. ++++++.++.+      ..+.++|+.+.+........   .+ ...-.+
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~-~~~v~~  174 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKK-LGFVET  174 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTT-CCEEEE
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCccccccc-CCceeE
Confidence            566677766666655444433322222222 67888877643      24899999987765533221   11 111222


Q ss_pred             EEE-eCCEEEEEecccCCCCCCCCceEEEEeCCCCcEE
Q 020682          174 VVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD  210 (322)
Q Consensus       174 ~~~-~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  210 (322)
                      ++. .++.+|+.++.+        ..+..||+++.+-.
T Consensus       175 ~~~~~~~~~~~s~~~d--------~~v~~~d~~~~~~~  204 (433)
T 3bws_A          175 ISIPEHNELWVSQMQA--------NAVHVFDLKTLAYK  204 (433)
T ss_dssp             EEEGGGTEEEEEEGGG--------TEEEEEETTTCCEE
T ss_pred             EEEcCCCEEEEEECCC--------CEEEEEECCCceEE
Confidence            333 367888887642        57889999876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=91.47  E-value=1.1  Score=38.80  Aligned_cols=102  Identities=9%  Similarity=0.090  Sum_probs=52.5

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      +++.++.|+.+      ..+.+||..+.+......+... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeeecccC-CCceEEEEECCCCCEEEEEeCC--------CcEEEEeCCC
Confidence            45566666643      3588999988775443333221 1122333443 55566666642        5688899988


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...-....  .......+  ++++++.|+.++     .+..|++
T Consensus       173 ~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d~  212 (337)
T 1gxr_A          173 QTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDN-----TVRSWDL  212 (337)
T ss_dssp             TEEEEEECCCS--SCEEEEEECTTSSEEEEEETTS-----EEEEEET
T ss_pred             Cceeeeeeccc--CceEEEEECCCCCEEEEEecCC-----cEEEEEC
Confidence            76443322111  11222233  556677776543     3556654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=91.01  E-value=1.7  Score=43.54  Aligned_cols=172  Identities=11%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             hccccccCCCCEEECCCCCC-CC-ccc--EEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCcee
Q 020682           98 TFADLPAPDLEWEQMPSAPV-PR-LDG--AAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~-~r-~~~--~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~  172 (322)
                      -+..||+.+.+|+.....+. .. ...  +++.- ++.|++....       .-+++||+.+++++.......-....-.
T Consensus       470 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~  542 (781)
T 3v9f_A          470 GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-------GGVGIYTPDMQLVRKFNQYEGFCSNTIN  542 (781)
T ss_dssp             EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-------SCEEEECTTCCEEEEECTTTTCSCSCEE
T ss_pred             ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-------CCEEEEeCCCCeEEEccCCCCCCCCeeE
Confidence            46678887777766543221 11 111  22222 4667765321       1278899999888875432110011223


Q ss_pred             EEEEe-CCEEEEEecccCCCCCCCCceE-EEEeCCCCcEEEcC---CCCCCCCCcEEEEE-CCEEEEEeccCCCCCCCCc
Q 020682          173 GVVSD-GRYIYIVSGQYGPQCRGPTSRT-FVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGL  246 (322)
Q Consensus       173 ~~~~~-~~~Iyv~GG~~~~~~~~~~~~v-~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~Lyv~GG~~~~~~~~~~  246 (322)
                      +++.. ++.||+...          .-+ ..||+++++++...   .+|.... .+++.. +|.|++.+. +      .+
T Consensus       543 ~i~~d~~g~lWi~T~----------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-~------Gl  604 (781)
T 3v9f_A          543 QIYRSSKGQMWLATG----------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-T------GI  604 (781)
T ss_dssp             EEEECTTSCEEEEET----------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-S------CE
T ss_pred             EEEECCCCCEEEEEC----------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-C------ce
Confidence            33333 577887532          334 78888888877654   2444332 344433 567887542 2      24


Q ss_pred             ceEeeeeeccccccCceEecc---CCCCCcCc-eeEEEECCEEEEEecCCCCCCCCCCC
Q 020682          247 EHWSIAVKDGKALEKAWRTEI---PIPRGGPH-RACFVFNDRLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       247 ~~~~~~v~~~~~~~~~W~~~~---~~p~~~~~-~~~~~~~~~lyv~GG~~~~~~~~p~~  301 (322)
                      .+|+       |.+.++....   .++...+. .+++...+.-+.|||.+|-..++|..
T Consensus       605 ~~~~-------~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~f~p~~  656 (781)
T 3v9f_A          605 SCYI-------TSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGLCFFNPDI  656 (781)
T ss_dssp             EEEE-------TTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEEEEECSCC
T ss_pred             EEEE-------CCCCceEEecccCCccccccccCceEECCCCEEEEECCCceEEEChhh
Confidence            4454       5566665542   24444332 23444444556668888887787764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=90.95  E-value=2.1  Score=39.14  Aligned_cols=136  Identities=17%  Similarity=0.193  Sum_probs=66.7

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEEC-CCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR-FDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      .+..++.|+.+      ..+.+||..+..-... ..+... ...-.++...++ .++.|+.+        ..+..||..+
T Consensus       222 ~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~s~~~d--------g~i~vwd~~~  285 (435)
T 1p22_A          222 NNGMMVTCSKD------RSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDK-YIVSASGD--------RTIKVWNTST  285 (435)
T ss_dssp             CTTEEEEEETT------SCEEEEECSSSSCCEEEEEECCC-SSCEEEEEEETT-EEEEEETT--------SEEEEEETTT
T ss_pred             cCCEEEEeeCC------CcEEEEeCCCCCCceeeeEecCC-CCcEEEEEeCCC-EEEEEeCC--------CeEEEEECCc
Confidence            44556666643      2477788876542210 111110 112223333344 45555532        5788899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEE
Q 020682          207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLF  286 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ly  286 (322)
                      .+-...  +...........+++.+++.|+.++     .+..|++.       +..  .+..+.........+..+++.+
T Consensus       286 ~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg-----~i~iwd~~-------~~~--~~~~~~~h~~~v~~~~~~~~~l  349 (435)
T 1p22_A          286 CEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIE-------CGA--CLRVLEGHEELVRCIRFDNKRI  349 (435)
T ss_dssp             CCEEEE--EECCSSCEEEEEEETTEEEEEETTS-----CEEEEETT-------TCC--EEEEECCCSSCEEEEECCSSEE
T ss_pred             CcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCC-----eEEEEECC-------CCC--EEEEEeCCcCcEEEEEecCCEE
Confidence            653322  1111122234455677777887644     36667643       222  1111111111223445588888


Q ss_pred             EEecCCCCC
Q 020682          287 VVGGQEGDF  295 (322)
Q Consensus       287 v~GG~~~~~  295 (322)
                      +.|+.++..
T Consensus       350 ~sg~~dg~i  358 (435)
T 1p22_A          350 VSGAYDGKI  358 (435)
T ss_dssp             EEEETTSCE
T ss_pred             EEEeCCCcE
Confidence            888887753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=90.80  E-value=3.2  Score=34.62  Aligned_cols=102  Identities=8%  Similarity=-0.062  Sum_probs=52.7

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEE-EECCEEEEEeecCCCCCCcceeEEEECCC-CceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..+|..+.+...+...+.  .-.+++ .-+++.+++++.       ..++++|+.+ .+...+.....  ...-..++
T Consensus        23 ~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~   91 (297)
T 2ojh_A           23 SIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDTGFA--TICNNDHG   91 (297)
T ss_dssp             EEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCCTTC--CCBCSCCE
T ss_pred             eEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEeccccc--cccccceE
Confidence            55666666665544332211  111122 124555555542       3699999998 77766543332  11112223


Q ss_pred             Ee-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC
Q 020682          176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP  214 (322)
Q Consensus       176 ~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~  214 (322)
                      .. +++.+++++.....    ...++.+|..+..-..+..
T Consensus        92 ~spdg~~l~~~~~~~~~----~~~l~~~~~~~~~~~~~~~  127 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFG----KSAIYLLPSTGGTPRLMTK  127 (297)
T ss_dssp             ECTTSSEEEEEECTTTS----SCEEEEEETTCCCCEECCS
T ss_pred             ECCCCCEEEEEEeCCCC----cceEEEEECCCCceEEeec
Confidence            32 45455555432222    4789999988877666543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=90.68  E-value=3.6  Score=37.19  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=52.9

Q ss_pred             hccccccCCCCEEECCCCC---CCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCcee
Q 020682           98 TFADLPAPDLEWEQMPSAP---VPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHL  172 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~  172 (322)
                      .+..+|..+.+.....+.+   .+......+..  ++++|+.++.+      ..+.+||+.+.+-.......   ...-.
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~---~~~~~  215 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLT---GKWSK  215 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECS---SSSEE
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCC---CCCee
Confidence            3666676666554432221   11111122233  67888887743      36889999876543321111   11223


Q ss_pred             EEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc
Q 020682          173 GVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI  212 (322)
Q Consensus       173 ~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~  212 (322)
                      +++..  ++.+|+.++.        -..+..||+.+.+....
T Consensus       216 ~~~~~~~~~~l~~~~~~--------~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWI--------SEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEETTTTEEEEEETT--------TTEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCEEEEEecC--------CCcEEEEECCCCcEEEE
Confidence            34443  5677777653        25788999988876544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=90.45  E-value=6.5  Score=34.07  Aligned_cols=71  Identities=8%  Similarity=0.016  Sum_probs=40.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE--eCCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~--~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ++.+|+.........-...++++|+.+.+-....+...   + ..++++  .++.+|+.++.        ...+..||++
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~-~~~~~~s~dg~~l~v~~~~--------~~~v~~~d~~  119 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---K-PFGATINNTTQTLWFGNTV--------NSAVTAIDAK  119 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---C-CCSEEEETTTTEEEEEETT--------TTEEEEEETT
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---C-cceEEECCCCCEEEEEecC--------CCEEEEEeCC
Confidence            45777765332211112468999998776443222221   1 122333  34568887653        2688999999


Q ss_pred             CCcEE
Q 020682          206 TRKWD  210 (322)
Q Consensus       206 t~~W~  210 (322)
                      +.+-.
T Consensus       120 ~~~~~  124 (353)
T 3vgz_A          120 TGEVK  124 (353)
T ss_dssp             TCCEE
T ss_pred             CCeeE
Confidence            87743

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=90.27  E-value=3.6  Score=41.13  Aligned_cols=176  Identities=10%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             hccccccCCCCEEECCCCCCCCc-ccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCC-CC-CCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRL-DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DM-AHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-p~-~r~~~~  173 (322)
                      .+..||+.+.+++.......+.. -.+++.. ++.||+...        .-+++||+.+.+|........ +. ...-.+
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEE
Confidence            46677777777777653211111 1222222 467777432        238899999988876543221 00 112223


Q ss_pred             EEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCC---CCCCCCCcEEEE-ECCEEEEEeccCCCCCCCCcce
Q 020682          174 VVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEH  248 (322)
Q Consensus       174 ~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~-~~~~Lyv~GG~~~~~~~~~~~~  248 (322)
                      ++.. ++.|++..-         ..-+.+||+++++++....   ++.... .++.. -+|.|++-.. .+      +  
T Consensus       500 i~~d~~g~lWigt~---------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~G------l--  560 (781)
T 3v9f_A          500 IAQDSEGRFWIGTF---------GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-EG------L--  560 (781)
T ss_dssp             EEECTTCCEEEEES---------SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-TE------E--
T ss_pred             EEEcCCCCEEEEEc---------CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-CC------c--
Confidence            3333 577887431         1457889999998888753   222111 12222 2466776432 11      2  


Q ss_pred             EeeeeeccccccCceEecc---CCCCCcCceeEEEE-CCEEEEEecCCCCCCCCCCCCeeee
Q 020682          249 WSIAVKDGKALEKAWRTEI---PIPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKC  306 (322)
Q Consensus       249 ~~~~v~~~~~~~~~W~~~~---~~p~~~~~~~~~~~-~~~lyv~GG~~~~~~~~p~~~~~~~  306 (322)
                          ++.||++++++....   .+|..... +++.- +|.|++.+ .+|...++|....+..
T Consensus       561 ----v~~~d~~~~~~~~~~~~~gl~~~~i~-~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~~  616 (781)
T 3v9f_A          561 ----VCFPSARNFDYQVFQRKEGLPNTHIR-AISEDKNGNIWAST-NTGISCYITSKKCFYT  616 (781)
T ss_dssp             ----EEESCTTTCCCEEECGGGTCSCCCCC-EEEECSSSCEEEEC-SSCEEEEETTTTEEEE
T ss_pred             ----eEEECCCCCcEEEccccCCCCCceEE-EEEECCCCCEEEEc-CCceEEEECCCCceEE
Confidence                123335566665542   24544432 33333 56676654 6677778887655443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=90.13  E-value=6.6  Score=34.23  Aligned_cols=135  Identities=10%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--C--CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      .+..+|..+.+|..+..+.........+..  +  +.+++.|+.+      ..+.+||..+..-.....+... ...-.+
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~-~~~v~~  152 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAH-AIGVNS  152 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECC-TTCEEE
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCC-CCceEE
Confidence            466777777776665444333222222333  2  5567777643      3578888876632111111110 111223


Q ss_pred             EEEe--------------CCEEEEEecccCCCCCCCCceEEEEeCCCC--cEEEcCCCCCCCCCcEEEEE--C---CEEE
Q 020682          174 VVSD--------------GRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLW--R---GRLH  232 (322)
Q Consensus       174 ~~~~--------------~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~--~---~~Ly  232 (322)
                      ++..              ++.+++.|+.+        ..+..||..+.  .+..+..+.........+.+  +   ++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             EEECCCC----------CTTCEEEEEETT--------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             EEEcCccccccccccCCCCCCEEEEEeCC--------CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            3333              36677777753        35667776543  35554433322222222333  3   6788


Q ss_pred             EEeccCCCCCCCCcceEeee
Q 020682          233 VMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       233 v~GG~~~~~~~~~~~~~~~~  252 (322)
                      +.|+.++     .+..|++.
T Consensus       225 ~s~~~dg-----~i~iwd~~  239 (379)
T 3jrp_A          225 ASVSQDR-----TCIIWTQD  239 (379)
T ss_dssp             EEEETTS-----CEEEEEES
T ss_pred             EEEeCCC-----EEEEEeCC
Confidence            8888654     36677653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=89.95  E-value=7.9  Score=32.55  Aligned_cols=141  Identities=8%  Similarity=0.041  Sum_probs=69.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++.+|+....      ...+++||+ +.+..... .+.. ...-.++++. ++.||+....        ...+.+||+ +
T Consensus       151 ~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~~~-~  212 (299)
T 2z2n_A          151 DNALWFTENQ------NNAIGRITE-SGDITEFK-IPTP-ASGPVGITKGNDDALWFVEII--------GNKIGRITT-S  212 (299)
T ss_dssp             TSCEEEEETT------TTEEEEECT-TCCEEEEE-CSST-TCCEEEEEECTTSSEEEEETT--------TTEEEEECT-T
T ss_pred             CCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCC-CCcceeEEECCCCCEEEEccC--------CceEEEECC-C
Confidence            4678876421      135889998 66665531 1111 1223345554 5678886532        367889999 7


Q ss_pred             CcEEEcCCCCCCCCCc-EEEEE-CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCc-CceeEEEECC
Q 020682          207 RKWDSIPPLPSPRYSP-ATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG-PHRACFVFND  283 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~-~~~~~-~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~-~~~~~~~~~~  283 (322)
                      .+..... ++...... .++.. +++||+....     ...+..|+       + +....... ++... .-.+++.-++
T Consensus       213 g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d-------~-~g~~~~~~-~~~~~~~~~~i~~~~g  277 (299)
T 2z2n_A          213 GEITEFK-IPTPNARPHAITAGAGIDLWFTEWG-----ANKIGRLT-------S-NNIIEEYP-IQIKSAEPHGICFDGE  277 (299)
T ss_dssp             CCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT-----TTEEEEEE-------T-TTEEEEEE-CSSSSCCEEEEEECSS
T ss_pred             CcEEEEE-CCCCCCCceeEEECCCCCEEEeccC-----CceEEEEC-------C-CCceEEEe-CCCCCCccceEEecCC
Confidence            7776642 22122222 23332 5678876422     12244444       2 22222221 12111 1123333677


Q ss_pred             EEEEEecCCCCCCCCCCC
Q 020682          284 RLFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       284 ~lyv~GG~~~~~~~~p~~  301 (322)
                      .||+....++...++|..
T Consensus       278 ~l~v~~~~~~l~~~~~~~  295 (299)
T 2z2n_A          278 TIWFAMECDKIGKLTLIK  295 (299)
T ss_dssp             CEEEEETTTEEEEEEEC-
T ss_pred             CEEEEecCCcEEEEEcCc
Confidence            888876544444555543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=89.84  E-value=4.8  Score=35.20  Aligned_cols=134  Identities=12%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             hccccccCCCCEEECCCCCCCCccc-EEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDG-AAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..||....++..+..+....... +++.. ++++++.|+.+      ..+.+||.++.++.....+... ...-.+++
T Consensus        31 ~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~  103 (372)
T 1k8k_C           31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLVILRI-NRAARCVR  103 (372)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEECCCC-SSCEEEEE
T ss_pred             EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCCCeeeeeEEeecC-CCceeEEE
Confidence            4566666666555544443222222 22222 45666677643      2478889888877654332221 12223334


Q ss_pred             Ee-CCEEEEEecccCCCCCCCCceEEEEeCCCCc-EEEcCCCCCC-CCCcEEEEE--CCEEEEEeccCCCCCCCCcceEe
Q 020682          176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSIPPLPSP-RYSPATQLW--RGRLHVMGGSKENRHTPGLEHWS  250 (322)
Q Consensus       176 ~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~-r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~  250 (322)
                      .. ++.+++.|+.+        ..+..||..+.. |........+ ........+  ++++++.|+.++     .+..|+
T Consensus       104 ~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d  170 (372)
T 1k8k_C          104 WAPNEKKFAVGSGS--------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFS  170 (372)
T ss_dssp             ECTTSSEEEEEETT--------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             ECCCCCEEEEEeCC--------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC-----CEEEEE
Confidence            43 55566666643        345555555443 3322221111 111122222  556777777644     366666


Q ss_pred             e
Q 020682          251 I  251 (322)
Q Consensus       251 ~  251 (322)
                      +
T Consensus       171 ~  171 (372)
T 1k8k_C          171 A  171 (372)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=89.68  E-value=4.6  Score=35.38  Aligned_cols=102  Identities=10%  Similarity=0.006  Sum_probs=51.8

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      +++.++.|+.+      ..+.+||.++.+-.......   ...-.+++.. +++.++.|+.+        ..+..||..+
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~lasg~~d--------g~i~iwd~~~  195 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLDTR---GKFILSIAYSPDGKYLASGAID--------GIINIFDIAT  195 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEECS---SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEecCC---CceEEEEEECCCCCEEEEEcCC--------CeEEEEECCC
Confidence            45566666643      35788888766533211111   1122333443 56666777653        4677899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...-......-......-++++++.|+.++     .+..|++
T Consensus       196 ~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd~  235 (321)
T 3ow8_A          196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG-----YIKIYDV  235 (321)
T ss_dssp             TEEEEEECCCSSCCCEEEECTTSCEEEEECTTS-----CEEEEET
T ss_pred             CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC-----eEEEEEC
Confidence            753322111111111111223567777887654     3666764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=89.41  E-value=5.2  Score=35.30  Aligned_cols=140  Identities=6%  Similarity=0.112  Sum_probs=67.4

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      +++.++.|+.++      .+.++|..+..+..+..+... ...-.+++.. ++.+++.|+.+        ..+..+|..+
T Consensus        72 ~g~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D--------~~v~iwd~~~  136 (345)
T 3fm0_A           72 CGNYLASASFDA------TTCIWKKNQDDFECVTTLEGH-ENEVKSVAWAPSGNLLATCSRD--------KSVWVWEVDE  136 (345)
T ss_dssp             TSSEEEEEETTS------CEEEEEECCC-EEEEEEECCC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEEECT
T ss_pred             CCCEEEEEECCC------cEEEEEccCCCeEEEEEccCC-CCCceEEEEeCCCCEEEEEECC--------CeEEEEECCC
Confidence            456677777542      366777777766544333321 1122233443 56667777653        4566777765


Q ss_pred             C-cEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEE--EE
Q 020682          207 R-KWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACF--VF  281 (322)
Q Consensus       207 ~-~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~--~~  281 (322)
                      . .+..+..+.........+.+  ++++++.|+.++     .+..|+..       +..|.....+.........+  .-
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-----~i~~w~~~-------~~~~~~~~~~~~h~~~v~~l~~sp  204 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD-----TVKLYREE-------EDDWVCCATLEGHESTVWSLAFDP  204 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS-----CEEEEEEE-------TTEEEEEEEECCCSSCEEEEEECT
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEec-------CCCEEEEEEecCCCCceEEEEECC
Confidence            4 23333222111111222223  456777777644     36667654       55665433322111111111  12


Q ss_pred             CCEEEEEecCCCC
Q 020682          282 NDRLFVVGGQEGD  294 (322)
Q Consensus       282 ~~~lyv~GG~~~~  294 (322)
                      +++.++.|+.++.
T Consensus       205 ~g~~l~s~s~D~~  217 (345)
T 3fm0_A          205 SGQRLASCSDDRT  217 (345)
T ss_dssp             TSSEEEEEETTSC
T ss_pred             CCCEEEEEeCCCe
Confidence            5666677776654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=89.31  E-value=0.52  Score=42.01  Aligned_cols=104  Identities=12%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.+      ..+.+||..+..|..+..+... ...-.+++.. ++.+++.|+.+        ..+..||..+
T Consensus        22 ~g~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~d--------~~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTAT------NQVELYEQDGNGWKHARTFSDH-DKIVTCVDWAPKSNRIVTCSQD--------RNAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSS------SCBCEEEEETTEEEECCCBCCC-SSCEEEEEECTTTCCEEEEETT--------SSEEEC----
T ss_pred             CCCEEEEecCC------CEEEEEEccCCceEEEEEEecC-CceEEEEEEeCCCCEEEEEeCC--------CeEEEEEcCC
Confidence            45566666643      2477788888888877666542 1222333443 55666667643        4577888877


Q ss_pred             Cc-EEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RK-WDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~-W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .. |.....+.........+.+  ++++++.|+.++     .+..|++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~  129 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-----VISVCYF  129 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-----CEEECCC
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-----eEEEEEE
Confidence            66 4433222221112222233  456677777644     3555654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=89.30  E-value=5.6  Score=34.02  Aligned_cols=130  Identities=9%  Similarity=0.003  Sum_probs=62.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..||....+......+............  +++.++.|+.+      ..+.+||..+.+........   ...-.+++
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~---~~~i~~~~  190 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGH---TDGASCID  190 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCC---SSCEEEEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeecc---cCceEEEE
Confidence            455666655553332222222221222222  45566666643      24888999876543322211   11223334


Q ss_pred             Ee-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEE-ECCEEEEEeccCCCCCCCCcceEee
Q 020682          176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       176 ~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .. ++..++.|+.        -..+..||+.+.+-...-..+.+  -..+.. -+++++++|+.++     .+..|++
T Consensus       191 ~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~-----~i~~~~~  253 (337)
T 1gxr_A          191 ISNDGTKLWTGGL--------DNTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESS-----NVEVLHV  253 (337)
T ss_dssp             ECTTSSEEEEEET--------TSEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             ECCCCCEEEEEec--------CCcEEEEECCCCceEeeecCCCc--eEEEEECCCCCEEEEEcCCC-----cEEEEEC
Confidence            43 5556666653        25788899887764333222111  112222 2456777776543     3566664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=89.12  E-value=8.8  Score=31.92  Aligned_cols=119  Identities=12%  Similarity=0.019  Sum_probs=58.5

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~  176 (322)
                      .+..+|..+........... ..-..++.. +++||+... +      ..+.+||+............   ...-.++++
T Consensus        47 ~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~~~---~~~p~~i~~  115 (270)
T 1rwi_B           47 RVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLPFDG---LNYPEGLAV  115 (270)
T ss_dssp             EEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T------TEEEEECTTCSCCEECCCCS---CSSEEEEEE
T ss_pred             cEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeeecCC---cCCCcceEE
Confidence            35566665544333321111 111233333 467888754 1      35899999877655442211   123345555


Q ss_pred             e-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEec
Q 020682          177 D-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (322)
Q Consensus       177 ~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~GG  236 (322)
                      . +++||+....        ...+.+||..+........... ..-..++.. +++||+...
T Consensus       116 ~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          116 DTQGAVYVADRG--------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             CTTCCEEEEEGG--------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEG
T ss_pred             CCCCCEEEEECC--------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEEC
Confidence            5 6779987542        2578888877765544321111 111233333 567888754

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=89.03  E-value=6.7  Score=37.01  Aligned_cols=60  Identities=12%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      ++++|+|-|        +..|+||..+++.... ..+. .+. .-++....+++|+|-|          +..+.||..+.
T Consensus       158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~-~w~g-i~~-iDAA~~~~g~~YfFkG----------~~y~rfd~~~~  216 (460)
T 1qhu_A          158 DEGILFFQG--------NRKWFWDLTTGTKKER-SWPA-VGN-CTSALRWLGRYYCFQG----------NQFLRFNPVSG  216 (460)
T ss_dssp             SSEEEEEET--------TEEEEEETTTTEEEEE-CCTT-SCC-CSEEEEETTEEEEEET----------TEEEEECTTTC
T ss_pred             CCeEEEEec--------ccEEEEecccceeecc-cCCC-CCc-cchheeeCCceEEEEC----------CEEEEEcCccC
Confidence            688999988        4689999987765431 1111 122 2344445789999988          56777887654


Q ss_pred             c
Q 020682          208 K  208 (322)
Q Consensus       208 ~  208 (322)
                      +
T Consensus       217 ~  217 (460)
T 1qhu_A          217 E  217 (460)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=88.86  E-value=4.6  Score=35.40  Aligned_cols=99  Identities=5%  Similarity=0.099  Sum_probs=51.9

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEE-CCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +++.++.|+.+      ..+.+||..+.+-.. +..-..    .-.+++.. ++.+++.|+.+        ..+..||..
T Consensus       175 dg~~lasg~~d------g~i~iwd~~~~~~~~~~~~h~~----~v~~l~~spd~~~l~s~s~d--------g~i~iwd~~  236 (321)
T 3ow8_A          175 DGKYLASGAID------GIINIFDIATGKLLHTLEGHAM----PIRSLTFSPDSQLLVTASDD--------GYIKIYDVQ  236 (321)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS----CCCEEEECTTSCEEEEECTT--------SCEEEEETT
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCcEEEEEcccCC----ceeEEEEcCCCCEEEEEcCC--------CeEEEEECC
Confidence            45666677654      247889988765332 211111    11233443 56677777643        457788988


Q ss_pred             CCcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          206 TRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       206 t~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +..-...-.  .....-..+.+  ++++++.|+.++     .+..|++
T Consensus       237 ~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~-----~v~iwd~  277 (321)
T 3ow8_A          237 HANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDK-----SVKVWDV  277 (321)
T ss_dssp             TCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeC
Confidence            765433211  11111122223  566777777644     4677774

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=88.74  E-value=9.4  Score=31.74  Aligned_cols=120  Identities=13%  Similarity=0.043  Sum_probs=60.6

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~  176 (322)
                      .+..||+.......+..... ..-..++.. +++||+....      ...+.+||..+...........   ..-.++++
T Consensus        88 ~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~  157 (270)
T 1rwi_B           88 RVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAV  157 (270)
T ss_dssp             EEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC---CSCCCEEE
T ss_pred             EEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC---CCceeEEE
Confidence            56677776554433321111 111233332 5678887542      1358888877665543321111   11234555


Q ss_pred             e-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEec
Q 020682          177 D-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (322)
Q Consensus       177 ~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~GG  236 (322)
                      . +++||+....        ...+.+||+.+..-........ ..-..++.. +|.||+...
T Consensus       158 ~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~  210 (270)
T 1rwi_B          158 DNSGNVYVTDTD--------NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEH  210 (270)
T ss_dssp             CTTCCEEEEEGG--------GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEET
T ss_pred             eCCCCEEEEECC--------CCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEEC
Confidence            4 5779987642        2578899998776544322111 111233333 457888754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=88.60  E-value=6.2  Score=34.66  Aligned_cols=102  Identities=7%  Similarity=0.068  Sum_probs=52.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++.+++.|+.+      ..+.+||..+..-...  +... ...-.+++.. ++.+++.|+.+        ..+..||..+
T Consensus       195 ~~~~l~sg~~d------~~v~~wd~~~~~~~~~--~~~h-~~~v~~v~~~p~~~~l~s~s~d--------~~v~iwd~~~  257 (340)
T 1got_B          195 DTRLFVSGACD------ASAKLWDVREGMCRQT--FTGH-ESDINAICFFPNGNAFATGSDD--------ATCRLFDLRA  257 (340)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTCSEEEE--ECCC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCeeEEE--EcCC-cCCEEEEEEcCCCCEEEEEcCC--------CcEEEEECCC
Confidence            45677777754      2478889876653321  1110 1112233443 56677777653        4677888887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...-..+........+.+  ++++++.|+.++     .+..|++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~-----~i~vwd~  299 (340)
T 1got_B          258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWDA  299 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----EEEEEET
T ss_pred             CcEEEEEccCCcccceEEEEECCCCCEEEEECCCC-----eEEEEEc
Confidence            653322111111112222222  567777777643     3666664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=88.48  E-value=9.6  Score=34.65  Aligned_cols=134  Identities=10%  Similarity=0.078  Sum_probs=66.9

Q ss_pred             ECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ..+.+++.|+.+      ..+.+||..+.+-...-...   ...-.++...++. ++.|+.+        ..+..||..+
T Consensus       167 ~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~-l~s~s~d--------g~i~~wd~~~  228 (445)
T 2ovr_B          167 MRDNIIISGSTD------RTLKVWNAETGECIHTLYGH---TSTVRCMHLHEKR-VVSGSRD--------ATLRVWDIET  228 (445)
T ss_dssp             EETTEEEEEETT------SCEEEEETTTTEEEEEECCC---SSCEEEEEEETTE-EEEEETT--------SEEEEEESSS
T ss_pred             ecCCEEEEEeCC------CeEEEEECCcCcEEEEECCC---CCcEEEEEecCCE-EEEEeCC--------CEEEEEECCC
Confidence            345566667653      34888898876543221111   1122334444554 5555542        5788899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEE
Q 020682          207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLF  286 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ly  286 (322)
                      .+-...-.  ........+.+++.+++.|+.++     .+..|++.       +.+  .+..+.........+..++..+
T Consensus       229 ~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~-------~~~--~~~~~~~~~~~v~~~~~~~~~l  292 (445)
T 2ovr_B          229 GQCLHVLM--GHVAAVRCVQYDGRRVVSGAYDF-----MVKVWDPE-------TET--CLHTLQGHTNRVYSLQFDGIHV  292 (445)
T ss_dssp             CCEEEEEE--CCSSCEEEEEECSSCEEEEETTS-----CEEEEEGG-------GTE--EEEEECCCSSCEEEEEECSSEE
T ss_pred             CcEEEEEc--CCcccEEEEEECCCEEEEEcCCC-----EEEEEECC-------CCc--EeEEecCCCCceEEEEECCCEE
Confidence            65332211  11122234455777777887654     36666643       222  1111111111123334477777


Q ss_pred             EEecCCCC
Q 020682          287 VVGGQEGD  294 (322)
Q Consensus       287 v~GG~~~~  294 (322)
                      +.|+.++.
T Consensus       293 ~~~~~d~~  300 (445)
T 2ovr_B          293 VSGSLDTS  300 (445)
T ss_dssp             EEEETTSC
T ss_pred             EEEeCCCe
Confidence            77776654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=88.41  E-value=2.1  Score=38.01  Aligned_cols=135  Identities=13%  Similarity=0.065  Sum_probs=62.7

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCc-eEECCCCCCCCCCceeEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK-WVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~p~~r~~~~~  174 (322)
                      .+..||.....|..+..+.........+..  ++++++.|+.+      ..+.+||..+.+ |.....+... ...-.++
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~  106 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVLLRL-NRAATFV  106 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEECCCC-SSCEEEE
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeccc-CCceEEE
Confidence            456677777777776666543333233333  45667777753      247888888766 5443323221 1222233


Q ss_pred             EEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCc-EEEcCCCCCC-CCCcEEEEE--CCEEEEEeccCCCCCCCCcceE
Q 020682          175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSIPPLPSP-RYSPATQLW--RGRLHVMGGSKENRHTPGLEHW  249 (322)
Q Consensus       175 ~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~-r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~  249 (322)
                      +.. ++.+++.|+.+        ..+..||..+.+ |..+..+..+ ......+.+  ++++++.|+.++     .+..|
T Consensus       107 ~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iw  173 (377)
T 3dwl_C          107 RWSPNEDKFAVGSGA--------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR-----KAYVL  173 (377)
T ss_dssp             ECCTTSSCCEEEESS--------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS-----CEEEE
T ss_pred             EECCCCCEEEEEecC--------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC-----EEEEE
Confidence            333 55566666643        456777777654 3323222221 111122222  456777777653     36777


Q ss_pred             eee
Q 020682          250 SIA  252 (322)
Q Consensus       250 ~~~  252 (322)
                      ++.
T Consensus       174 d~~  176 (377)
T 3dwl_C          174 SAY  176 (377)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=88.27  E-value=3.3  Score=36.84  Aligned_cols=100  Identities=6%  Similarity=-0.023  Sum_probs=50.5

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      +++.++.|+.+      ..+.+||..+.+-...... .  ...-.+++.. ++ +++.|+.+        ..+..||+.+
T Consensus       258 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~-~--~~~i~~~~~~~~~-~l~~~~~d--------~~i~i~d~~~  319 (425)
T 1r5m_A          258 TNKLLLSASDD------GTLRIWHGGNGNSQNCFYG-H--SQSIVSASWVGDD-KVISCSMD--------GSVRLWSLKQ  319 (425)
T ss_dssp             TTTEEEEEETT------SCEEEECSSSBSCSEEECC-C--SSCEEEEEEETTT-EEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCccceEecC-C--CccEEEEEECCCC-EEEEEeCC--------CcEEEEECCC
Confidence            45566666643      2478888876543221111 1  1222344444 45 55666542        5788899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEeee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      .+-...-....  .....+.+  ++++++.|+.++     .+..|++.
T Consensus       320 ~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg-----~i~i~~~~  360 (425)
T 1r5m_A          320 NTLLALSIVDG--VPIFAGRISQDGQKYAVAFMDG-----QVNVYDLK  360 (425)
T ss_dssp             TEEEEEEECTT--CCEEEEEECTTSSEEEEEETTS-----CEEEEECH
T ss_pred             CcEeEecccCC--ccEEEEEEcCCCCEEEEEECCC-----eEEEEECC
Confidence            66333221111  11122222  466777777543     36667653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.16  E-value=13  Score=32.72  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             ccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEE
Q 020682          103 PAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYI  181 (322)
Q Consensus       103 d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~I  181 (322)
                      .....+|+.+.. |....-..+... .+.+|++|..       ..+++-+-.-++|+.+.....+......++.+.++.+
T Consensus        21 ~d~g~~W~~~~~-~~~~~~~~v~~~~~~~~~~~G~~-------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~   92 (327)
T 2xbg_A           21 ALDYNPWEAIQL-PTTATILDMSFIDRHHGWLVGVN-------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEG   92 (327)
T ss_dssp             BCSSCCEEEEEC-SCSSCEEEEEESSSSCEEEEETT-------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEE
T ss_pred             CCCCCCceEeec-CCCCcEEEEEECCCCcEEEEcCC-------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeE
Confidence            334568998853 333322232222 4678886531       1244443345689997543211122344555667889


Q ss_pred             EEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCC-CCCCCcEEE-EECCEEEEEec
Q 020682          182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-SPRYSPATQ-LWRGRLHVMGG  236 (322)
Q Consensus       182 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~-~~~~~Lyv~GG  236 (322)
                      |++|..         ..++.-+-.-.+|+++.... .+-....++ .-++++|+.|.
T Consensus        93 ~~~g~~---------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  140 (327)
T 2xbg_A           93 WIVGEP---------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN  140 (327)
T ss_dssp             EEEEET---------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET
T ss_pred             EEEECC---------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC
Confidence            987531         34444433456899986431 121122333 34678888764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=88.14  E-value=11  Score=31.80  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++||....+      ..+.+||+..+....+.....  ...-.++++. ++.||+....        ...+.+||+..
T Consensus       131 ~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~--------~~~i~~~~~~g  194 (286)
T 1q7f_A          131 KGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNR--------AHCVKVFNYEG  194 (286)
T ss_dssp             TSCEEEEETTT------TEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEEEEGG--------GTEEEEEETTC
T ss_pred             CCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCc--cCCcEEEEECCCCCEEEEECC--------CCEEEEEcCCC
Confidence            56788875421      358899987654444321111  1223345554 5789987642        26788999876


Q ss_pred             CcEEEcCCCCCCCCCc-EEEE-ECCEEEEEecc
Q 020682          207 RKWDSIPPLPSPRYSP-ATQL-WRGRLHVMGGS  237 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~-~~~~-~~~~Lyv~GG~  237 (322)
                      ..-..+..-. ....+ .++. -+|+||+....
T Consensus       195 ~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          195 QYLRQIGGEG-ITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             CEEEEESCTT-TSCSEEEEEECTTCCEEEEECS
T ss_pred             CEEEEEccCC-ccCCCcEEEECCCCCEEEEeCC
Confidence            5544443211 01122 2333 25678887643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=87.96  E-value=2.4  Score=36.75  Aligned_cols=64  Identities=5%  Similarity=0.003  Sum_probs=41.9

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ++.+|+..+.+      ..+.++|+++.+.......+.   ... .+++.  ++.+|+.+..        ...++.+|++
T Consensus         9 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~--------~~~i~~~d~~   70 (331)
T 3u4y_A            9 SNFGIVVEQHL------RRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDF--------CQTLVQIETQ   70 (331)
T ss_dssp             CCEEEEEEGGG------TEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEEST--------TCEEEEEECS
T ss_pred             CCEEEEEecCC------CeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCC--------CCeEEEEECC
Confidence            57788887642      368999999888765444332   122 44443  4568877652        2588999998


Q ss_pred             CCcE
Q 020682          206 TRKW  209 (322)
Q Consensus       206 t~~W  209 (322)
                      +.+-
T Consensus        71 ~~~~   74 (331)
T 3u4y_A           71 LEPP   74 (331)
T ss_dssp             SSSC
T ss_pred             CCce
Confidence            8774

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.90  E-value=4.8  Score=40.07  Aligned_cols=142  Identities=11%  Similarity=0.063  Sum_probs=73.8

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++.|++++|..      .-+.+||+++++++.......+......++... ++.||+..          ..-+.+||+++
T Consensus       482 ~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt----------~~Gl~~~~~~~  545 (758)
T 3ott_A          482 EGNVWVLLYNN------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF----------HGGVMRINPKD  545 (758)
T ss_dssp             TSCEEEEETTC------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE----------TTEEEEECC--
T ss_pred             CCCEEEEccCC------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe----------cCceEEEecCC
Confidence            46688765532      138899999998887632111101122233333 57888643          14578899988


Q ss_pred             CcEEEcC--CCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCE
Q 020682          207 RKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDR  284 (322)
Q Consensus       207 ~~W~~~~--~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  284 (322)
                      ++++...  .+|.. .-.++..-+|.|++-.. .      .+.+|+       |++.+..... +|...+..++....+.
T Consensus       546 ~~~~~~~~~gl~~~-~i~~i~~~~g~lWi~t~-~------Gl~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~G  609 (758)
T 3ott_A          546 ESQQSISFGSFSNN-EILSMTCVKNSIWVSTT-N------GLWIID-------RKTMDARQQN-MTNKRFTSLLFDPKED  609 (758)
T ss_dssp             CCCCBCCCCC---C-CEEEEEEETTEEEEEES-S------CEEEEE-------TTTCCEEEC---CCCCCSEEEEETTTT
T ss_pred             CceEEecccCCCcc-ceEEEEECCCCEEEECC-C------CeEEEc-------CCCceeEEec-CCCCceeeeEEECCCC
Confidence            8876653  33332 22344445788887542 2      244554       4455554432 3333333233333344


Q ss_pred             EEEEecCCCCCCCCCCC
Q 020682          285 LFVVGGQEGDFMAKPGS  301 (322)
Q Consensus       285 lyv~GG~~~~~~~~p~~  301 (322)
                      -+.|||.+|-..++|..
T Consensus       610 ~l~fG~~~Gl~~f~p~~  626 (758)
T 3ott_A          610 CVYLGGADGFGISHSNL  626 (758)
T ss_dssp             EEEEECBSEEEEEEC--
T ss_pred             cEEEecCCceEEEChhh
Confidence            56678888877777764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=87.79  E-value=8.3  Score=33.02  Aligned_cols=100  Identities=12%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.+      ..+.+||..+.+-...-....  . .-.+++.. ++.+++.|+.+        ..+..||+.+
T Consensus        76 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~--~-~v~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~  138 (312)
T 4ery_A           76 DSNLLVSASDD------KTLKIWDVSSGKCLKTLKGHS--N-YVFCCNFNPQSNLIVSGSFD--------ESVRIWDVKT  138 (312)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEEEECCS--S-CEEEEEECSSSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEEEcCCC--C-CEEEEEEcCCCCEEEEEeCC--------CcEEEEECCC
Confidence            45677777753      358889988765332111111  1 11223332 45566666643        4677899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...  ++........+.+  ++++++.|+.++     .+..|++
T Consensus       139 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~  178 (312)
T 4ery_A          139 GKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDT  178 (312)
T ss_dssp             CCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEC
Confidence            653322  1111111122223  456777777654     3666664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.75  E-value=3.9  Score=36.24  Aligned_cols=128  Identities=16%  Similarity=0.059  Sum_probs=62.7

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE-CCE-EEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNL-FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .++.+|..+.+...+...+. ........- +++ |+.... +........++.+|..+.++..+.. ..+ .......+
T Consensus       169 ~l~~~d~~~g~~~~~~~~~~-~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~~  244 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQDTA-WLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAE-GESCTHEF  244 (396)
T ss_dssp             EEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCT-TEEEEEEE
T ss_pred             eEEEEECCCCcEEeeccCCc-ccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCC-CccccceE
Confidence            46667776666655432111 111111121 233 444432 2222222468999998888777655 211 11222233


Q ss_pred             Ee-CC-EEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEec
Q 020682          176 SD-GR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGG  236 (322)
Q Consensus       176 ~~-~~-~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~GG  236 (322)
                      .. ++ .|+..+-..+ ..   ...++.+|+.+.+...+..++.  .. ....- +++++++++
T Consensus       245 ~spdg~~l~~~~~~~~-~~---~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKG-QT---DRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             ECTTSSCEEEEEEETT-TC---CEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEE
T ss_pred             ECCCCCEEEEEecCCC-Cc---cceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEec
Confidence            33 44 4554432222 11   2459999999988777754442  11 22233 677666654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=87.61  E-value=5.7  Score=34.08  Aligned_cols=100  Identities=10%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      +++.++.|+.+      ..+.++|..+.+........   ...-.+++.. ++.+++.|+.+        ..+..||..+
T Consensus        34 ~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~   96 (312)
T 4ery_A           34 NGEWLASSSAD------KLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSNLLVSASDD--------KTLKIWDVSS   96 (312)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTCCEEEEECCC---SSCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEeeCC------CeEEEEeCCCcccchhhccC---CCceEEEEEcCCCCEEEEECCC--------CEEEEEECCC
Confidence            45566666643      24777888776654432211   1122233433 55666667642        5678899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...-..  ....-..+.+  ++.+++.|+.++     .+..|++
T Consensus        97 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~  136 (312)
T 4ery_A           97 GKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDV  136 (312)
T ss_dssp             CCEEEEEEC--CSSCEEEEEECSSSSEEEEEETTS-----CEEEEET
T ss_pred             CcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEEC
Confidence            653322111  1111112222  456777777654     3666764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=87.59  E-value=7.1  Score=35.55  Aligned_cols=102  Identities=12%  Similarity=0.042  Sum_probs=55.9

Q ss_pred             EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ..++..++.|+.+      ..+.+||..+.+-...-...   ...-.+++ .++.+++.|+.+        ..+..||..
T Consensus       140 ~~d~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h---~~~v~~l~-~~~~~l~sg~~d--------g~i~vwd~~  201 (435)
T 1p22_A          140 QYDDQKIVSGLRD------NTIKIWDKNTLECKRILTGH---TGSVLCLQ-YDERVIITGSSD--------STVRVWDVN  201 (435)
T ss_dssp             ECCSSEEEEEESS------SCEEEEESSSCCEEEEECCC---SSCEEEEE-CCSSEEEEEETT--------SCEEEEESS
T ss_pred             EECCCEEEEEeCC------CeEEEEeCCCCeEEEEEcCC---CCcEEEEE-ECCCEEEEEcCC--------CeEEEEECC
Confidence            4467777787754      35888898776543321111   11122233 366677777653        567789988


Q ss_pred             CCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682          206 TRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       206 t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      +.+-...-  .........+.+++.+++.|+.++     .+..|++.
T Consensus       202 ~~~~~~~~--~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~  241 (435)
T 1p22_A          202 TGEMLNTL--IHHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDMA  241 (435)
T ss_dssp             SCCEEEEE--CCCCSCEEEEECCTTEEEEEETTS-----CEEEEECS
T ss_pred             CCcEEEEE--cCCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeCC
Confidence            77643321  111222233445666777777644     36667653

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=87.52  E-value=12  Score=31.49  Aligned_cols=130  Identities=18%  Similarity=0.264  Sum_probs=68.4

Q ss_pred             ECCEEEEEeecCCCCCCcceeEEEECCCCce--EECC----CCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEE
Q 020682          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRF----DMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTF  200 (322)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~----~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~  200 (322)
                      .++++|+|-|        +.+|+++.....+  ..+.    .+|   .... ++...++++|+|-|          +.+|
T Consensus        27 ~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP---~~ID-AA~~~~~~~yfFkG----------~~yw   84 (219)
T 1hxn_A           27 NHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGP---STVD-AAFSWEDKLYLIQD----------TKVY   84 (219)
T ss_dssp             TTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSC---SSCS-EEEEETTEEEEEET----------TEEE
T ss_pred             CCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCC---CCcc-EEEEECCcEEEecC----------CEEE
Confidence            4789999987        3577776554332  1121    222   2233 33335899999977          6788


Q ss_pred             EEeCCCCc-E-----EEcC---CCCCC--CC-CcEEEEE--CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEec
Q 020682          201 VLDSETRK-W-----DSIP---PLPSP--RY-SPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE  266 (322)
Q Consensus       201 ~yd~~t~~-W-----~~~~---~~p~~--r~-~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~  266 (322)
                      +|+..++. =     +.+.   .+|..  .. --++..+  ++++|+|-|..       .++|+...+   | ...|...
T Consensus        85 ~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~~-------ywr~d~~~~---P-~~i~~~~  153 (219)
T 1hxn_A           85 VFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRR-------LWWLDLKSG---A-QATWTEL  153 (219)
T ss_dssp             EEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETTE-------EEEEEGGGG---G-GCCCEEE
T ss_pred             EEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCCE-------EEEEeCCCC---c-eEhhhcC
Confidence            88865321 1     1111   13332  11 2233333  57899997742       455553321   2 3445443


Q ss_pred             cCCCCCcCceeEEE------------ECCEEEEEecC
Q 020682          267 IPIPRGGPHRACFV------------FNDRLFVVGGQ  291 (322)
Q Consensus       267 ~~~p~~~~~~~~~~------------~~~~lyv~GG~  291 (322)
                      +-+|..-.  ++..            .++.+|+|-|.
T Consensus       154 ~g~p~~vd--Aa~~~~~~~~~~~~~~~~~~~YFFkg~  188 (219)
T 1hxn_A          154 PWPHEKVD--GALCMEKPLGPNSCSTSGPNLYLIHGP  188 (219)
T ss_dssp             CCSCSCCS--EEEEESSCSSSCCSCSSSCEEEEEETT
T ss_pred             CCCCCCcC--EEEEccccccccceeccCCeEEEEECC
Confidence            33343333  3333            45789999883

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=87.39  E-value=11  Score=31.12  Aligned_cols=105  Identities=8%  Similarity=-0.073  Sum_probs=56.2

Q ss_pred             hccccccCC-CCEEECCCCCC-CCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPD-LEWEQMPSAPV-PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~-~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..+|..+ .+...+..... .........-+++.+++++.....  ...++.+|..+..-..+....   .  ...++
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~---~--~~~~~  135 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFG--KSAIYLLPSTGGTPRLMTKNL---P--SYWHG  135 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTS--SCEEEEEETTCCCCEECCSSS---S--EEEEE
T ss_pred             eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCC--cceEEEEECCCCceEEeecCC---C--ccceE
Confidence            567778777 66665543332 121222222245555555533222  246899998877655543322   1  22233


Q ss_pred             Ee--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC
Q 020682          176 SD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL  215 (322)
Q Consensus       176 ~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  215 (322)
                      ..  +..|++.++.++      ...++.+|..+.....+...
T Consensus       136 ~spdg~~l~~~~~~~~------~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A          136 WSPDGKSFTYCGIRDQ------VFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             ECTTSSEEEEEEEETT------EEEEEEEETTTCCEEECCCS
T ss_pred             ECCCCCEEEEEECCCC------ceEEEEEECCCCcceEcccC
Confidence            33  445665554332      24788888888887776543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=87.12  E-value=7.3  Score=34.29  Aligned_cols=106  Identities=8%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.||.+      ..+.++|.++.+|.....+...-...-.+++.. ++.+++.|+.+        ..+..+|..+
T Consensus        27 ~g~~las~~~D------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D--------~~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGD------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD--------ATTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETT------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT--------SCEEEEEECC
T ss_pred             CCCEEEEEcCC------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC--------CcEEEEEccC
Confidence            56677777754      247778888887754222111001222333433 55666677653        3456677777


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEeee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      ..+..+..+..-...-..+.+  ++++++.|+.++     .+..|++.
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~  135 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVD  135 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEEC
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECC
Confidence            666554433221112222333  566777777654     36777753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=86.65  E-value=18  Score=32.74  Aligned_cols=102  Identities=9%  Similarity=0.156  Sum_probs=53.4

Q ss_pred             ECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      .++..++.|+.+      ..+.+||..+.+-...-...   .....++...++ +++.|+.+        ..+..||..+
T Consensus       287 ~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~-~l~~~~~d--------g~i~vwd~~~  348 (445)
T 2ovr_B          287 FDGIHVVSGSLD------TSIRVWDVETGNCIHTLTGH---QSLTSGMELKDN-ILVSGNAD--------STVKIWDIKT  348 (445)
T ss_dssp             ECSSEEEEEETT------SCEEEEETTTCCEEEEECCC---CSCEEEEEEETT-EEEEEETT--------SCEEEEETTT
T ss_pred             ECCCEEEEEeCC------CeEEEEECCCCCEEEEEcCC---cccEEEEEEeCC-EEEEEeCC--------CeEEEEECCC
Confidence            356666666643      24788898776533211111   112223344455 55556532        5678899887


Q ss_pred             CcEEEcCCCCC-CCCCcEEEEECCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~-~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...-..+. .........+++.+++.|+.++     .+..|++
T Consensus       349 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----~v~iwd~  389 (445)
T 2ovr_B          349 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG-----TVKLWDL  389 (445)
T ss_dssp             CCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS-----EEEEEET
T ss_pred             CcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCC-----eEEEEEC
Confidence            65332212111 1222334456777788887654     3666764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=86.57  E-value=6.1  Score=36.16  Aligned_cols=74  Identities=9%  Similarity=0.143  Sum_probs=44.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +++.+++++.+...   ..++++|+.+.+...+...+.    ...+.+..  +.+|++.+..++      ...++.+|+.
T Consensus       189 dg~~la~~s~~~~~---~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spdg~~la~~~~~~g------~~~i~~~d~~  255 (415)
T 2hqs_A          189 DGSKLAYVTFESGR---SALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLA  255 (415)
T ss_dssp             TSSEEEEEECTTSS---CEEEEEETTTCCEEEEECCSS----CEEEEEECTTSSEEEEEECTTS------SCEEEEEETT
T ss_pred             CCCEEEEEEecCCC---cEEEEEECCCCcEEEeecCCC----cccCEEEcCCCCEEEEEEecCC------CceEEEEECC
Confidence            45555555543221   369999999887766544332    22233333  345665554322      3679999999


Q ss_pred             CCcEEEcCC
Q 020682          206 TRKWDSIPP  214 (322)
Q Consensus       206 t~~W~~~~~  214 (322)
                      +.+...+..
T Consensus       256 ~~~~~~l~~  264 (415)
T 2hqs_A          256 SGQIRQVTD  264 (415)
T ss_dssp             TCCEEECCC
T ss_pred             CCCEEeCcC
Confidence            988877654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=86.56  E-value=11  Score=33.38  Aligned_cols=101  Identities=14%  Similarity=0.183  Sum_probs=52.7

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      +.+++.|+.+      ..+.+||..+.+.........   ..-.+++.. ++.+++.|+.+        ..+..||..+.
T Consensus       210 g~~l~sgs~D------g~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D--------~~v~lwd~~~~  272 (354)
T 2pbi_B          210 GNTFVSGGCD------KKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDD--------ATCRLYDLRAD  272 (354)
T ss_dssp             CCEEEEEETT------SCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------SCEEEEETTTT
T ss_pred             CCEEEEEeCC------CeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCC--------CeEEEEECCCC
Confidence            4677777754      247888988776543221111   112233333 45666677653        45678888776


Q ss_pred             cEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          208 KWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .-..+-...........+.+  ++++++.|+.++     .+..|++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-----~i~vwd~  313 (354)
T 2pbi_B          273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-----TINVWDV  313 (354)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC-----cEEEEEC
Confidence            53322211111222223333  567777777543     3667764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=86.47  E-value=6.7  Score=38.77  Aligned_cols=97  Identities=19%  Similarity=0.308  Sum_probs=58.4

Q ss_pred             EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCC------CCceeEEEEeCCEEEEEecccCCCCCCC
Q 020682          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~------~r~~~~~~~~~~~Iyv~GG~~~~~~~~~  195 (322)
                      -++.++.||+....       ..++.+|.++-  .|+.-...+...      .....+.++.+++||+...         
T Consensus        73 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~---------  136 (677)
T 1kb0_A           73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------  136 (677)
T ss_dssp             CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---------
T ss_pred             CEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC---------
Confidence            35679999998752       35899998754  487744322100      0112345678999998643         


Q ss_pred             CceEEEEeCCCCc--EEEcCC-C-CC-CCCCcEEEEECCEEEEEec
Q 020682          196 TSRTFVLDSETRK--WDSIPP-L-PS-PRYSPATQLWRGRLHVMGG  236 (322)
Q Consensus       196 ~~~v~~yd~~t~~--W~~~~~-~-p~-~r~~~~~~~~~~~Lyv~GG  236 (322)
                      -..+..+|.+|.+  |+.-.. - +. .....+-++.++++|+..+
T Consensus       137 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~  182 (677)
T 1kb0_A          137 DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG  182 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCB
T ss_pred             CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEec
Confidence            2679999998875  876432 1 11 1122234467888887543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=86.39  E-value=7.5  Score=34.42  Aligned_cols=132  Identities=7%  Similarity=-0.065  Sum_probs=64.1

Q ss_pred             hccccccCCCCEEECCCCCCCCcc-cEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLD-GAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~  174 (322)
                      .+..||..+.+............. .+++..  ++.+++.|+.+      ..+.++|..+.....+...... ...-.++
T Consensus        97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~  169 (383)
T 3ei3_B           97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAKTDSW-DYWYCCV  169 (383)
T ss_dssp             CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEECCCCS-SCCEEEE
T ss_pred             eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEeccCCC-CCCeEEE
Confidence            455666665554433222111121 222222  34666666643      3588899987666554433221 1112233


Q ss_pred             EEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE--CCE-EEEEeccCCCCCCCCcceEe
Q 020682          175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGR-LHVMGGSKENRHTPGLEHWS  250 (322)
Q Consensus       175 ~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-Lyv~GG~~~~~~~~~~~~~~  250 (322)
                      +.. ++.+++.|+.+        ..+..||+....-..+..-   ......+.+  +++ +++.|+.++     .+..|+
T Consensus       170 ~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd  233 (383)
T 3ei3_B          170 DVSVSRQMLATGDST--------GRLLLLGLDGHEIFKEKLH---KAKVTHAEFNPRCDWLMATSSVDA-----TVKLWD  233 (383)
T ss_dssp             EEETTTTEEEEEETT--------SEEEEEETTSCEEEEEECS---SSCEEEEEECSSCTTEEEEEETTS-----EEEEEE
T ss_pred             EECCCCCEEEEECCC--------CCEEEEECCCCEEEEeccC---CCcEEEEEECCCCCCEEEEEeCCC-----EEEEEe
Confidence            333 55566666642        5788888854443333211   111122222  344 777777643     366676


Q ss_pred             ee
Q 020682          251 IA  252 (322)
Q Consensus       251 ~~  252 (322)
                      +.
T Consensus       234 ~~  235 (383)
T 3ei3_B          234 LR  235 (383)
T ss_dssp             GG
T ss_pred             CC
Confidence            53

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=86.37  E-value=10  Score=33.16  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ++..++.||.+      ..+.+||..+..  ......+..............++.+ +.|+.+        ..+..||+.
T Consensus       108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~s~d--------~~i~~wd~~  172 (340)
T 1got_B          108 SGNYVACGGLD------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI-VTSSGD--------TTCALWDIE  172 (340)
T ss_dssp             TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEE-EEEETT--------SCEEEEETT
T ss_pred             CCCEEEEEeCC------CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcE-EEEECC--------CcEEEEECC
Confidence            45666777754      357788887643  1111111110011122222235654 445432        567789988


Q ss_pred             CCcEEEcCCCCCCCCCcEEEE-ECCEEEEEeccCCCCCCCCcceEee
Q 020682          206 TRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       206 t~~W~~~~~~p~~r~~~~~~~-~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +.+-...-...... -..+.. -++++++.|+.++     .+..|++
T Consensus       173 ~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~d~-----~v~~wd~  213 (340)
T 1got_B          173 TGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDA-----SAKLWDV  213 (340)
T ss_dssp             TTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeCCC-----cEEEEEC
Confidence            87643321111111 111222 2566788887654     3667774

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=86.26  E-value=5.4  Score=35.54  Aligned_cols=102  Identities=14%  Similarity=0.206  Sum_probs=52.7

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +++.++.|+.+      ..+.+||..+.+-...-....   ..-.++++.  ++.+++.+|.+        ..+..||+.
T Consensus       150 dg~~l~sgs~d------g~v~iwd~~~~~~~~~~~~h~---~~v~~v~~s~~~~~~~~s~~~d--------g~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKD------FSVKVWDLSQKAVLKSYNAHS---SEVNCVAACPGKDTIFLSCGED--------GRILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEEEECTTCSSCEEEEETT--------SCEEECCTT
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCC---CCEEEEEEccCCCceeeeeccC--------CceEEEECC
Confidence            45667777754      247888988765433211111   112233333  34567777753        456778887


Q ss_pred             CCcEEEcCCCCCCCCCcEEEEE---CCEEEEEeccCCCCCCCCcceEee
Q 020682          206 TRKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       206 t~~W~~~~~~p~~r~~~~~~~~---~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +.+-...-...........+.+   ++.+++.|+.++     .+..|++
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~  256 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNI  256 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEES
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeeccc-----ceeEEEC
Confidence            7653322222222222223333   356777887644     3666764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=86.15  E-value=7  Score=33.67  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      ++.+.+.|+.+      ..+.++|.++..-...-....  ..........++.+++.|+.+        ..+..||..+.
T Consensus        24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~s~d--------~~i~vwd~~~~   87 (304)
T 2ynn_A           24 TEPWVLTTLYS------GRVELWNYETQVEVRSIQVTE--TPVRAGKFIARKNWIIVGSDD--------FRIRVFNYNTG   87 (304)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTTEEEEEEECCS--SCEEEEEEEGGGTEEEEEETT--------SEEEEEETTTC
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCceeEEeeccC--CcEEEEEEeCCCCEEEEECCC--------CEEEEEECCCC
Confidence            45566667643      357888988765332111111  112222222355566666642        56778898876


Q ss_pred             cEEEcCCCCCCCCCcEEEE-ECCEEEEEeccCCCCCCCCcceEee
Q 020682          208 KWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~-~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +-...-.... ..-..++. -++++++.|+.++     .+..|++
T Consensus        88 ~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~  126 (304)
T 2ynn_A           88 EKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDL-----TVKLWNW  126 (304)
T ss_dssp             CEEEEEECCS-SCEEEEEECSSSSEEEEEETTS-----CEEEEEG
T ss_pred             cEEEEEeCCC-CcEEEEEEcCCCCEEEEECCCC-----eEEEEEC
Confidence            5322111111 11112222 2455777777644     4777775

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=85.94  E-value=10  Score=37.91  Aligned_cols=175  Identities=11%  Similarity=0.069  Sum_probs=87.6

Q ss_pred             hccccccCCCCEEECCCCC------CC-CcccEEEEE-CCE-EEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCC-
Q 020682           98 TFADLPAPDLEWEQMPSAP------VP-RLDGAAIQI-KNL-FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM-  167 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p------~~-r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~-  167 (322)
                      -+..||+.+.+++.....+      .+ ..-.+++.. ++. |||- ..+      .-+.+||+.+.++.......... 
T Consensus       378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWig-t~~------~Gl~~~d~~~~~~~~~~~~~~~l~  450 (795)
T 4a2l_A          378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIG-THA------GGLSILHRNSGQVENFNQRNSQLV  450 (795)
T ss_dssp             CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEE-ETT------TEEEEEETTTCCEEEECTTTSCCS
T ss_pred             CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEE-eCc------CceeEEeCCCCcEEEeecCCCCcC
Confidence            3566777777776654321      01 112233332 455 6663 211      23889999988877654321100 


Q ss_pred             CCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCC--CCC--CC-CcEEEE-ECCEEEEEeccCCC
Q 020682          168 AHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL--PSP--RY-SPATQL-WRGRLHVMGGSKEN  240 (322)
Q Consensus       168 ~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~--r~-~~~~~~-~~~~Lyv~GG~~~~  240 (322)
                      ...-.+++.. ++.|++...          .-+.+||+++++|+.....  +..  .. -.++.. -+|+|++-.. .  
T Consensus       451 ~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~--  517 (795)
T 4a2l_A          451 NENVYAILPDGEGNLWLGTL----------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E--  517 (795)
T ss_dssp             CSCEEEEEECSSSCEEEEES----------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S--
T ss_pred             CCeeEEEEECCCCCEEEEec----------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C--
Confidence            1222333333 567887432          3578899999999887532  111  11 112222 2466776432 2  


Q ss_pred             CCCCCcceEeeeeeccccccCceEeccC------CCCCcCceeEEE-ECCEEEEEecCCCCCCCCCCCCeeee
Q 020682          241 RHTPGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHRACFV-FNDRLFVVGGQEGDFMAKPGSPIFKC  306 (322)
Q Consensus       241 ~~~~~~~~~~~~v~~~~~~~~~W~~~~~------~p~~~~~~~~~~-~~~~lyv~GG~~~~~~~~p~~~~~~~  306 (322)
                          .+.+|+.       .++.+ ....      ++.... .+++. -++.|++... .|...++|....+..
T Consensus       518 ----Gl~~~~~-------~~~~~-~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigT~-~Gl~~~d~~~~~~~~  576 (795)
T 4a2l_A          518 ----GLSVFKQ-------EGLDI-QKASILPVSNVTKLFT-NCIYEASNGIIWVGTR-EGFYCFNEKDKQIKR  576 (795)
T ss_dssp             ----CEEEEEE-------ETTEE-EECCCSCSCGGGGSCE-EEEEECTTSCEEEEES-SCEEEEETTTTEEEE
T ss_pred             ----ceEEEeC-------CCCeE-EEecCCCCCCCCCCee-EEEEECCCCCEEEEeC-CCceeECCCCCcEEE
Confidence                2555553       35555 3221      222221 12222 2567776554 466777776655543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=85.72  E-value=11  Score=34.26  Aligned_cols=93  Identities=10%  Similarity=0.077  Sum_probs=45.7

Q ss_pred             ceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCce
Q 020682          197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR  276 (322)
Q Consensus       197 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~  276 (322)
                      ..+..||..+.+-...-.............-+++.++.|+.++     .+..|++.       +.+  .+..+.......
T Consensus       290 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~-------~~~--~~~~~~~h~~~v  355 (464)
T 3v7d_B          290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-----TIRIWDLE-------NGE--LMYTLQGHTALV  355 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETT-------TTE--EEEEECCCSSCE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECC-------CCc--EEEEEeCCCCcE
Confidence            5678899887654332211111111112222456677777644     36677643       222  222222112222


Q ss_pred             eEEEECCEEEEEecCCCCC-CCCCCCCe
Q 020682          277 ACFVFNDRLFVVGGQEGDF-MAKPGSPI  303 (322)
Q Consensus       277 ~~~~~~~~lyv~GG~~~~~-~~~p~~~~  303 (322)
                      ..+..+++.++.|+.++.. +++.....
T Consensus       356 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          356 GLLRLSDKFLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEECCCCc
Confidence            4455567788888877653 45555433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=85.66  E-value=9.4  Score=37.61  Aligned_cols=95  Identities=19%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCC------CCceeEEEEeCCEEEEEecccCCCCCCC
Q 020682          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~------~r~~~~~~~~~~~Iyv~GG~~~~~~~~~  195 (322)
                      -++.++.||+....       ..++.+|.++-  .|+.-...+...      .....+.++.+++||+...         
T Consensus        62 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---------  125 (668)
T 1kv9_A           62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL---------  125 (668)
T ss_dssp             CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---------
T ss_pred             CEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---------
Confidence            35679999998752       35888998654  487643322100      0012335667899988542         


Q ss_pred             CceEEEEeCCCCc--EEEcCCCCC--CCCCcEEEEECCEEEEE
Q 020682          196 TSRTFVLDSETRK--WDSIPPLPS--PRYSPATQLWRGRLHVM  234 (322)
Q Consensus       196 ~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~Lyv~  234 (322)
                      -..+..+|.+|.+  |+.-..-+.  .....+-++.++++|+-
T Consensus       126 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg  168 (668)
T 1kv9_A          126 DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIG  168 (668)
T ss_dssp             TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEEC
T ss_pred             CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEe
Confidence            2679999998875  886542111  12222345678888774

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=85.64  E-value=8.2  Score=37.27  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             EEEEECCEEEEEeecCCCCCCcceeEEEEC-CCC--ceEECCCCCCCC------CCceeEEEEeCCEEEEEecccCCCCC
Q 020682          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNF-TDN--KWVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCR  193 (322)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~p~------~r~~~~~~~~~~~Iyv~GG~~~~~~~  193 (322)
                      .-++.++.||+....      ...++++|. ++.  .|+.-.......      .....+.++.+++||+...       
T Consensus        57 ~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence            335679999998662      135899998 544  488743322100      0112245677999998643       


Q ss_pred             CCCceEEEEeCCCCc--EEEc-CCCCCC-CCCcEEEEECCEEEEEec
Q 020682          194 GPTSRTFVLDSETRK--WDSI-PPLPSP-RYSPATQLWRGRLHVMGG  236 (322)
Q Consensus       194 ~~~~~v~~yd~~t~~--W~~~-~~~p~~-r~~~~~~~~~~~Lyv~GG  236 (322)
                        -..++.+|.+|.+  |+.- ...+.. ....+-++.++++|+-.+
T Consensus       124 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~  168 (571)
T 2ad6_A          124 --NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS  168 (571)
T ss_dssp             --TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECB
T ss_pred             --CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEec
Confidence              2679999998874  8754 221111 112233456888887543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=85.49  E-value=5  Score=35.17  Aligned_cols=140  Identities=12%  Similarity=0.132  Sum_probs=66.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeC---CEEEEEecccCCCCCCCCceEEEEeC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG---RYIYIVSGQYGPQCRGPTSRTFVLDS  204 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~---~~Iyv~GG~~~~~~~~~~~~v~~yd~  204 (322)
                      ++.+++.|+.+      ..+.++|..+..|..+..+... ...-.++....   +..++.|+.++        .+..||.
T Consensus       164 ~~~~l~s~s~D------~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~D~--------~v~iw~~  228 (330)
T 2hes_X          164 SEALLASSSYD------DTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFRLCSGSDDS--------TVRVWKY  228 (330)
T ss_dssp             SSSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCSSSSCEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCCCCeeEEEEEeCCC--------eEEEEEe
Confidence            45667777754      2467778777777655444321 11112333332   34555566432        3444443


Q ss_pred             CC------CcEEEcCCCCCC--CCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcC--
Q 020682          205 ET------RKWDSIPPLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP--  274 (322)
Q Consensus       205 ~t------~~W~~~~~~p~~--r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~--  274 (322)
                      .+      ..|..+..++..  ..-..++.-.+.+++.||.++     .+..|+..       +..|..+........  
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg-----~v~iw~~~-------~~~~~~~~~~~~~h~~~  296 (330)
T 2hes_X          229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG-----VLAVYEEV-------DGEWKVFAKRALCHGVY  296 (330)
T ss_dssp             EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTS-----CEEEEEEE-------TTEEEEEEEESCTTTTS
T ss_pred             cCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCC-----EEEEEEcC-------CCceEEEeccccccccc
Confidence            32      246555433321  111222222344666777543     46777754       666755432211111  


Q ss_pred             ceeEEEE----CCEEEEEecCCCC
Q 020682          275 HRACFVF----NDRLFVVGGQEGD  294 (322)
Q Consensus       275 ~~~~~~~----~~~lyv~GG~~~~  294 (322)
                      ....+..    ++++++.||.++.
T Consensus       297 ~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          297 EINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             CEEEEEEC-----CCEEEEETTSE
T ss_pred             eEEEEEEecCCCceEEEEecCCCc
Confidence            1122221    4678888888764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=85.18  E-value=10  Score=37.74  Aligned_cols=173  Identities=10%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--C--CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--K--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      .+..+|..+.+|..+..+.........+..  +  +.+++.|+.+      ..+.+||..+..-......... ...-.+
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~-~~~v~~  150 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAH-AIGVNS  150 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECC-SSCEEE
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecC-CCceEE
Confidence            466777777766555444333332233333  2  5677777753      3578888876532111111110 111122


Q ss_pred             EEEe--------------CCEEEEEecccCCCCCCCCceEEEEeCCCC--cEEEcCCCCCCCCCcEEEEE--C---CEEE
Q 020682          174 VVSD--------------GRYIYIVSGQYGPQCRGPTSRTFVLDSETR--KWDSIPPLPSPRYSPATQLW--R---GRLH  232 (322)
Q Consensus       174 ~~~~--------------~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~--~---~~Ly  232 (322)
                      ++..              ++.+++.|+.+        ..+..||..+.  .+..+..+.........+.+  +   ++++
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l  222 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGAD--------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  222 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETT--------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             EEecCcccccccccccCCCCCEEEEEECC--------CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence            2322              25666677653        34666666543  44444333222222222333  3   6788


Q ss_pred             EEeccCCCCCCCCcceEeeeeeccccccCceEec-cCC--CCCcCceeEEEECCEEEEEecCCCCC
Q 020682          233 VMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE-IPI--PRGGPHRACFVFNDRLFVVGGQEGDF  295 (322)
Q Consensus       233 v~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~-~~~--p~~~~~~~~~~~~~~lyv~GG~~~~~  295 (322)
                      +.||.++     .+..|++.     .....+... ...  ...........-+++.++.||.++..
T Consensus       223 ~s~s~Dg-----~I~iwd~~-----~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          223 ASVSQDR-----TCIIWTQD-----NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             EEEESSS-----CEEEEEES-----SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             EEEecCC-----EEEEecCC-----CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence            8888654     36777754     112222211 111  11111112223467778888877653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=84.84  E-value=12  Score=33.10  Aligned_cols=102  Identities=14%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +++.++.|+.+      ..+.++|.++.+-..  .+... ...-.+++..  +..+++.|+.+        ..+..||..
T Consensus       138 dg~~l~sgs~d------~~i~iwd~~~~~~~~--~~~~h-~~~V~~~~~~~~~~~~l~s~s~D--------~~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKD------ICIKVWDLAQQVVLS--SYRAH-AAQVTCVAASPHKDSVFLSCSED--------NRILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEE--EECCC-SSCEEEEEECSSCTTEEEEEETT--------SCEEEEETT
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEE--EEcCc-CCceEEEEecCCCCCceeeeccc--------ccccccccc
Confidence            56667777754      247888988765332  22211 1111233332  34577777753        457788988


Q ss_pred             CCcEEEcCCCCCCCCCcEEEEE---CCEEEEEeccCCCCCCCCcceEee
Q 020682          206 TRKWDSIPPLPSPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       206 t~~W~~~~~~p~~r~~~~~~~~---~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +.+-...-...........+.+   ++++++.|+.++     .+..||+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~  244 (344)
T 4gqb_B          201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDT  244 (344)
T ss_dssp             SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEES
T ss_pred             ccceeeeeecceeeccceeeeecCCCCcceEEeccCC-----cEEEEEC
Confidence            7663332111111111222222   456888887654     3566664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=84.69  E-value=11  Score=37.24  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             EEEECCEEEEEeecCCCCCCcceeEEEECCCC--ceEECCCCCCCC------CCceeEEEEeCCEEEEEecccCCCCCCC
Q 020682          124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM------AHSHLGVVSDGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       124 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~p~------~r~~~~~~~~~~~Iyv~GG~~~~~~~~~  195 (322)
                      -++.++.||+....       ..++.+|.++-  .|+.-...+...      .....+.++.+++||+...         
T Consensus        66 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------  129 (689)
T 1yiq_A           66 PIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------  129 (689)
T ss_dssp             CEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred             CEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence            34679999998652       35889998754  488643322100      0112245677899998542         


Q ss_pred             CceEEEEeCCCCc--EEEcCC-CCC--CCCCcEEEEECCEEEEE
Q 020682          196 TSRTFVLDSETRK--WDSIPP-LPS--PRYSPATQLWRGRLHVM  234 (322)
Q Consensus       196 ~~~v~~yd~~t~~--W~~~~~-~p~--~r~~~~~~~~~~~Lyv~  234 (322)
                      -..+..+|.+|.+  |+.-.. -+.  .....+-++.++.+|+-
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg  173 (689)
T 1yiq_A          130 DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIG  173 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEEC
T ss_pred             CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEE
Confidence            2678999998875  886543 111  11222335678888774

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=84.07  E-value=19  Score=30.69  Aligned_cols=64  Identities=11%  Similarity=0.137  Sum_probs=34.6

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeC---CEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG---RYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~---~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +.+++.|+.+      ..+.++|.++.+|..+..+... ...-.+++...   +.+++.|+.+        ..+..||..
T Consensus        67 g~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d--------~~v~~wd~~  131 (297)
T 2pm7_B           67 GTILASCSYD------GKVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSD--------GKVSVVEFK  131 (297)
T ss_dssp             CSEEEEEETT------TEEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETT--------SEEEEEEBC
T ss_pred             CCEEEEEcCC------CEEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECC--------CcEEEEEec
Confidence            4667777754      3578889988777654433221 11222333321   4566666643        456667765


Q ss_pred             CC
Q 020682          206 TR  207 (322)
Q Consensus       206 t~  207 (322)
                      +.
T Consensus       132 ~~  133 (297)
T 2pm7_B          132 EN  133 (297)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=83.55  E-value=12  Score=33.15  Aligned_cols=63  Identities=8%  Similarity=0.039  Sum_probs=32.4

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      +..++.|+.+      ..+.+||..+.+-...... .  ...-.+++.. ++.+++.|+.+        ..+..||..+.
T Consensus       217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~  279 (425)
T 1r5m_A          217 DDKFVIPGPK------GAIFVYQITEKTPTGKLIG-H--HGPISVLEFNDTNKLLLSASDD--------GTLRIWHGGNG  279 (425)
T ss_dssp             TTEEEEECGG------GCEEEEETTCSSCSEEECC-C--SSCEEEEEEETTTTEEEEEETT--------SCEEEECSSSB
T ss_pred             CCEEEEEcCC------CeEEEEEcCCCceeeeecc-C--CCceEEEEECCCCCEEEEEcCC--------CEEEEEECCCC
Confidence            3345566543      3588999887543221111 1  1122233333 45566666642        46778887765


Q ss_pred             c
Q 020682          208 K  208 (322)
Q Consensus       208 ~  208 (322)
                      +
T Consensus       280 ~  280 (425)
T 1r5m_A          280 N  280 (425)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=83.05  E-value=20  Score=31.94  Aligned_cols=128  Identities=9%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS  176 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~  176 (322)
                      .+..+|..+.+............-.+++.. ++.+++.|+.+      ..+.+||..+.+-.......   ...-.++..
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~---~~~v~~~~~  184 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRTMAGH---QARVGCLSW  184 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCC---SSCEEEEEE
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEEecCC---CCceEEEEE
Confidence            455666665554443332211111122211 45666666643      24888998876643322111   112223333


Q ss_pred             eCCEEEEEecccCCCCCCCCceEEEEeCCCCc--EEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       177 ~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                       ++.+++.|+.+        ..+..||..+..  -..+...   ......+.+  ++.+++.|+.++     .+..|++
T Consensus       185 -~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~  246 (401)
T 4aez_A          185 -NRHVLSSGSRS--------GAIHHHDVRIANHQIGTLQGH---SSEVCGLAWRSDGLQLASGGNDN-----VVQIWDA  246 (401)
T ss_dssp             -ETTEEEEEETT--------SEEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             -CCCEEEEEcCC--------CCEEEEecccCcceeeEEcCC---CCCeeEEEEcCCCCEEEEEeCCC-----eEEEccC
Confidence             44466666642        577888887432  1111111   111122223  566777887644     3666765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=82.41  E-value=10  Score=34.37  Aligned_cols=100  Identities=9%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++.+++.|+.+      ..+.+||..+.+-...-...   ...-.+++.. ++.+++.|+.++        .+..||..+
T Consensus       119 ~~~~l~s~s~D------g~i~vwd~~~~~~~~~l~~h---~~~V~~v~~~~~~~~l~sgs~D~--------~i~iwd~~~  181 (410)
T 1vyh_C          119 VFSVMVSASED------ATIKVWDYETGDFERTLKGH---TDSVQDISFDHSGKLLASCSADM--------TIKLWDFQG  181 (410)
T ss_dssp             SSSEEEEEESS------SCEEEEETTTCCCCEEECCC---SSCEEEEEECTTSSEEEEEETTS--------CCCEEETTS
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEecc---CCcEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCC
Confidence            35677777754      24788898876543221111   1122233333 566777777643        445678776


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .+-...  +..-...-..+.+  ++..++.|+.++     .+..|++
T Consensus       182 ~~~~~~--~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~  221 (410)
T 1vyh_C          182 FECIRT--MHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEV  221 (410)
T ss_dssp             SCEEEC--CCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEET
T ss_pred             CceeEE--EcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEEC
Confidence            543222  2111111122223  456667777643     3666765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=82.02  E-value=27  Score=31.12  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=50.9

Q ss_pred             eeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEE
Q 020682          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT  224 (322)
Q Consensus       146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~  224 (322)
                      .+.+||..+.+.........  ...-.+++.. ++.+++.|+.+        ..+..||..+.+-...-.  ........
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~--~~~~~v~~  181 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDE--STYVASVKWSHDGSFLSVGLGN--------GLVDIYDVESQTKLRTMA--GHQARVGC  181 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCT--TCCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCCEEEEEC--CCSSCEEE
T ss_pred             eEEEeeCCCCcEeEeeecCC--CCCEEEEEECCCCCEEEEECCC--------CeEEEEECcCCeEEEEec--CCCCceEE
Confidence            58889998887665544432  2222334443 55566666642        467889988776443322  11222334


Q ss_pred             EEECCEEEEEeccCCCCCCCCcceEee
Q 020682          225 QLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       225 ~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      +.+++.+++.|+.++     .+..|++
T Consensus       182 ~~~~~~~l~~~~~dg-----~i~i~d~  203 (401)
T 4aez_A          182 LSWNRHVLSSGSRSG-----AIHHHDV  203 (401)
T ss_dssp             EEEETTEEEEEETTS-----EEEEEET
T ss_pred             EEECCCEEEEEcCCC-----CEEEEec
Confidence            455777777777654     3566664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=81.89  E-value=26  Score=30.70  Aligned_cols=106  Identities=10%  Similarity=-0.056  Sum_probs=54.0

Q ss_pred             ECCEEEEEeecCCCCCCcceeEEEECCCCc----eEECCCCCCCCCCceeEEEEe-C----C---EEEEEecccCCCCCC
Q 020682          127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNK----WVDRFDMPKDMAHSHLGVVSD-G----R---YIYIVSGQYGPQCRG  194 (322)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~p~~r~~~~~~~~-~----~---~Iyv~GG~~~~~~~~  194 (322)
                      ....+++.|+.+      ..+.+||..+.+    +..+..+... ...-.+++.. +    +   .+++.|+.+      
T Consensus        24 ~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~~~d------   90 (397)
T 1sq9_A           24 ACNSFTVSCSGD------GYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATTSFS------   90 (397)
T ss_dssp             ECSSEEEEEETT------SEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEEETT------
T ss_pred             ecCCeEEEEcCC------CEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEEcCC------
Confidence            344666677653      357888888765    2111111110 1112233333 4    5   677777653      


Q ss_pred             CCceEEEEeCCCCc------EEEcCCCCCC---CCCcEEEEE-----CCEE-EEEeccCCCCCCCCcceEeee
Q 020682          195 PTSRTFVLDSETRK------WDSIPPLPSP---RYSPATQLW-----RGRL-HVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       195 ~~~~v~~yd~~t~~------W~~~~~~p~~---r~~~~~~~~-----~~~L-yv~GG~~~~~~~~~~~~~~~~  252 (322)
                        ..+..||..+..      +..+...+..   ..-..+...     ++.+ ++.|+.++     .+..|++.
T Consensus        91 --g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~  156 (397)
T 1sq9_A           91 --GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TTYIWKFH  156 (397)
T ss_dssp             --SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-----CEEEEEEE
T ss_pred             --CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cEEEEeCC
Confidence              457778877766      7776544311   111222222     4556 77777643     47777764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=81.71  E-value=23  Score=30.34  Aligned_cols=67  Identities=7%  Similarity=0.044  Sum_probs=35.8

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeC----CEEEEEecccCCCCCCCCceEEEEeC
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG----RYIYIVSGQYGPQCRGPTSRTFVLDS  204 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~----~~Iyv~GG~~~~~~~~~~~~v~~yd~  204 (322)
                      ..+++.|+.+...   ..+.+||..+.+.........  ...-.+++...    +.+++.|+.+        ..+..||.
T Consensus        31 ~~l~~~~s~~~~d---~~v~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~   97 (357)
T 3i2n_A           31 AKFVTMGNFARGT---GVIQLYEIQHGDLKLLREIEK--AKPIKCGTFGATSLQQRYLATGDFG--------GNLHIWNL   97 (357)
T ss_dssp             SEEEEEEC--CCC---EEEEEEEECSSSEEEEEEEEE--SSCEEEEECTTCCTTTCCEEEEETT--------SCEEEECT
T ss_pred             ceEEEecCccCCC---cEEEEEeCCCCcccceeeecc--cCcEEEEEEcCCCCCCceEEEecCC--------CeEEEEeC
Confidence            4666666542111   358888988877654332222  11222333332    3666667643        45778888


Q ss_pred             CCCc
Q 020682          205 ETRK  208 (322)
Q Consensus       205 ~t~~  208 (322)
                      .+.+
T Consensus        98 ~~~~  101 (357)
T 3i2n_A           98 EAPE  101 (357)
T ss_dssp             TSCS
T ss_pred             CCCC
Confidence            7654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=81.66  E-value=20  Score=32.19  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=52.4

Q ss_pred             CCEEECCCCCCCCcccEEEEE---CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCC---CCCCCC-------ceeE
Q 020682          107 LEWEQMPSAPVPRLDGAAIQI---KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM---PKDMAH-------SHLG  173 (322)
Q Consensus       107 ~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~p~~r-------~~~~  173 (322)
                      .+|+...+.+....-++++..   .+.||+.+.....+   .-+++.+-...+|+.+...   +....+       .-.+
T Consensus        43 ~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g---~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~  119 (394)
T 3b7f_A           43 RTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLG---PTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFW  119 (394)
T ss_dssp             CSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CC---EEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEE
T ss_pred             CCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCC---ccEEEeCCCCCCceECCccccCCCcccccccccccceeE
Confidence            689876421211222333333   46788876432111   2477777778899987642   211011       1223


Q ss_pred             EEEe----CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC
Q 020682          174 VVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP  213 (322)
Q Consensus       174 ~~~~----~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  213 (322)
                      +++.    .+.||+.+.         ..-+++.+....+|+.+.
T Consensus       120 l~~~~~~~~~~l~~g~~---------~ggl~~S~DgG~tW~~~~  154 (394)
T 3b7f_A          120 LTPGHASEPGTWYAGTS---------PQGLFRSTDHGASWEPVA  154 (394)
T ss_dssp             EEECCTTSTTCEEEEEE---------TTEEEEESSTTSBCEECH
T ss_pred             EEeCCCCCCCEEEEEec---------CCcEEEEcCCCCCeEECc
Confidence            4443    577887542         256788888888999885

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=81.63  E-value=14  Score=33.40  Aligned_cols=100  Identities=9%  Similarity=0.040  Sum_probs=49.8

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.++      .+.+||..+.+-..  .+... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       161 ~~~~l~sgs~D~------~i~iwd~~~~~~~~--~~~~h-~~~V~~v~~~p~~~~l~s~s~D--------~~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSADM------TIKLWDFQGFECIR--TMHGH-DHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETTS------CCCEEETTSSCEEE--CCCCC-SSCEEEEEECSSSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEeCCCCceeE--EEcCC-CCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCC
Confidence            456777777542      35667876644322  22211 1122233333 45556666643        5678899887


Q ss_pred             CcEEEcCCCCCCCCCcEEEE--ECCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~--~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ..-...-..  .......+.  -++.+++.|+.++     .+..|++
T Consensus       224 ~~~~~~~~~--h~~~v~~~~~~~~g~~l~s~s~D~-----~v~vwd~  263 (410)
T 1vyh_C          224 GYCVKTFTG--HREWVRMVRPNQDGTLIASCSNDQ-----TVRVWVV  263 (410)
T ss_dssp             CCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CcEEEEEeC--CCccEEEEEECCCCCEEEEEcCCC-----eEEEEEC
Confidence            764322111  111111222  2456777777654     3556654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=81.59  E-value=6.9  Score=35.73  Aligned_cols=104  Identities=11%  Similarity=0.008  Sum_probs=55.6

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ++.+++.|+.++      .+.++|..+..-......... ...-.+++..  ++.+++.|+.+        ..+..+|.+
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~~~~l~s~s~D--------~~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLNTNQFYASSME--------GTTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSCTTEEEEECSS--------SCEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCCCCEEEEEeCC--------CEEEEeecc
Confidence            456777887542      478888876654332222111 1122344443  45566666653        456778988


Q ss_pred             CCcEEEcCCCCCC-CCCcEE-EEECCEEEEEeccCCCCCCCCcceEee
Q 020682          206 TRKWDSIPPLPSP-RYSPAT-QLWRGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       206 t~~W~~~~~~p~~-r~~~~~-~~~~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ++.-..+...... ....++ ..-++++++.|+.++     .+..|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~  238 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLNM  238 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEES
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeecc
Confidence            8766555322211 111222 233567788887654     3666764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=81.46  E-value=31  Score=31.23  Aligned_cols=135  Identities=5%  Similarity=-0.005  Sum_probs=66.4

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      ++..++.|+.+      ..+.+||..+.+-..  .+... ...-.++.. ++..++.|+.+        ..+..||+.+.
T Consensus       321 ~~~~l~sg~~d------g~i~vwd~~~~~~~~--~~~~h-~~~v~~~~~-~~~~l~s~s~d--------g~v~vwd~~~~  382 (464)
T 3v7d_B          321 ERKRCISASMD------TTIRIWDLENGELMY--TLQGH-TALVGLLRL-SDKFLVSAAAD--------GSIRGWDANDY  382 (464)
T ss_dssp             TTTEEEEEETT------SCEEEEETTTTEEEE--EECCC-SSCEEEEEE-CSSEEEEEETT--------SEEEEEETTTC
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCcEEE--EEeCC-CCcEEEEEE-cCCEEEEEeCC--------CcEEEEECCCC
Confidence            45566666643      248889988765322  22211 111223333 44555666542        56888998876


Q ss_pred             cEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEE
Q 020682          208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV  287 (322)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv  287 (322)
                      .-..... ............++++++.|+ ++     .+..|+++       +++-......+....-..+...++.+++
T Consensus       383 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg-----~i~iwd~~-------~g~~~~~~~~~~~~~v~~v~~~~~~l~~  448 (464)
T 3v7d_B          383 SRKFSYH-HTNLSAITTFYVSDNILVSGS-EN-----QFNIYNLR-------SGKLVHANILKDADQIWSVNFKGKTLVA  448 (464)
T ss_dssp             CEEEEEE-CTTCCCEEEEEECSSEEEEEE-TT-----EEEEEETT-------TCCEEESCTTTTCSEEEEEEEETTEEEE
T ss_pred             ceeeeec-CCCCccEEEEEeCCCEEEEec-CC-----eEEEEECC-------CCcEEehhhccCCCcEEEEEecCCEEEE
Confidence            5222211 111222334456777777776 32     36777753       4433322112222222244445666766


Q ss_pred             EecCCCC
Q 020682          288 VGGQEGD  294 (322)
Q Consensus       288 ~GG~~~~  294 (322)
                      .++.++.
T Consensus       449 ~~~~~g~  455 (464)
T 3v7d_B          449 AVEKDGQ  455 (464)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCe
Confidence            6665544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=81.26  E-value=7.3  Score=33.54  Aligned_cols=131  Identities=10%  Similarity=0.010  Sum_probs=65.0

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEE--ECCEEEEEeecCCCCCCcceeEEEECCCCce-EE-CCCCCCCCCCceeE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQ--IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW-VD-RFDMPKDMAHSHLG  173 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~-~~~~~~p~~r~~~~  173 (322)
                      .+..+|..+.+....-..+..  ...++.  -++.+|+.+..+      ..++++|+++.+- .. +.....  ++...+
T Consensus        21 ~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~   90 (331)
T 3u4y_A           21 RISFFSTDTLEILNQITLGYD--FVDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQS--SMADVD   90 (331)
T ss_dssp             EEEEEETTTCCEEEEEECCCC--EEEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSS--CCCCEE
T ss_pred             eEEEEeCcccceeeeEEccCC--cceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCC--CccceE
Confidence            567777777766544333221  112222  244577776532      2689999988774 22 222222  222122


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CC-EEEEEeccCCCCCCCC-cceEe
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RG-RLHVMGGSKENRHTPG-LEHWS  250 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~Lyv~GG~~~~~~~~~-~~~~~  250 (322)
                      ....++.|| .+...+.     ...+.+||+.+.+-...-+.  ....+.++.- ++ .||+.+...     .. +..|+
T Consensus        91 ~s~dg~~l~-~~~~~~~-----~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~  157 (331)
T 3u4y_A           91 ITPDDQFAV-TVTGLNH-----PFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSS-----ANTVRRFK  157 (331)
T ss_dssp             ECTTSSEEE-ECCCSSS-----SCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETT-----TTEEEEEE
T ss_pred             ECCCCCEEE-EecCCCC-----cccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCC-----CceEEEEE
Confidence            222355677 3322110     13899999998876543222  1111233332 44 477765532     23 55666


Q ss_pred             e
Q 020682          251 I  251 (322)
Q Consensus       251 ~  251 (322)
                      +
T Consensus       158 ~  158 (331)
T 3u4y_A          158 I  158 (331)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=81.16  E-value=35  Score=31.73  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=99.3

Q ss_pred             CCEEE--CCCCCCCCcccEEEEECCEEEEEeecCCCCCCcc-eeEEEE----CCCCce-EECCCCCCCCCCceeEEEEeC
Q 020682          107 LEWEQ--MPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYN----FTDNKW-VDRFDMPKDMAHSHLGVVSDG  178 (322)
Q Consensus       107 ~~W~~--~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd----~~~~~W-~~~~~~~~p~~r~~~~~~~~~  178 (322)
                      ..|++  ++.+|..-.-|+.|.+++.-|++|=.++.-..+. -+..|.    .-...- ++++.--.+ .-+-.++-..+
T Consensus       270 spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~-~AsEPCvkyYd  348 (670)
T 3ju4_A          270 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEP-DASEPCIKYYD  348 (670)
T ss_dssp             SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCT-TEEEEEEEEET
T ss_pred             CCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhcc-ccccchhhhhC
Confidence            45654  4555544457888999998889986544332221 122221    111111 223222111 33455666789


Q ss_pred             CEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEEECCEEEEEeccCC----------CCCC---C
Q 020682          179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGGSKE----------NRHT---P  244 (322)
Q Consensus       179 ~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~~Lyv~GG~~~----------~~~~---~  244 (322)
                      +.||+.--.......  -+.+.+=+..-..|+.+. |-..-....-.+..++.||+||-...          .+|.   +
T Consensus       349 gvLyLtTRgt~~~~~--GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yP  426 (670)
T 3ju4_A          349 GVLYLITRGTRGDRL--GSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYP  426 (670)
T ss_dssp             TEEEEEEEESCTTSC--CCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCC
T ss_pred             CEEEEEecCcCCCCC--cceeeeecccCCchhheeccccccccCCCcceeCCEEEEEeccccccccccCCCcccccccCC
Confidence            999998633322221  377888888888899874 22222334445788999999996421          1111   1


Q ss_pred             CcceEeeeeeccccccCceEeccC------CCCCcCce-eEEEECCEEE-EEecCC
Q 020682          245 GLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHR-ACFVFNDRLF-VVGGQE  292 (322)
Q Consensus       245 ~~~~~~~~v~~~~~~~~~W~~~~~------~p~~~~~~-~~~~~~~~ly-v~GG~~  292 (322)
                      ....-.+.+-++..+.-+|..+..      +.....+. ++|+-++-|| ||||.+
T Consensus       427 RtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd  482 (670)
T 3ju4_A          427 RTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED  482 (670)
T ss_dssp             EEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred             ceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence            122223344455555777877633      23333333 4455677764 888855

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=81.12  E-value=36  Score=31.81  Aligned_cols=134  Identities=9%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             CEEEEEeec-CCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          129 NLFYVFAGY-GSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       129 ~~lyv~GG~-~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++.++.|+. +      ..+.+||..+.+... ..+... ...-.+++.. ++++++.|+.+        ..+..||..+
T Consensus       456 ~~~l~~~~~~d------~~i~~~~~~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~l~~~~~d--------g~i~iw~~~~  519 (615)
T 1pgu_A          456 QNYVAVGLEEG------NTIQVFKLSDLEVSF-DLKTPL-RAKPSYISISPSETYIAAGDVM--------GKILLYDLQS  519 (615)
T ss_dssp             SSEEEEEETTT------SCEEEEETTEEEEEE-ECSSCC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCEEEEeecCC------CeEEEEECCCccccc-cccCCc-cCceEEEEECCCCCEEEEcCCC--------CeEEEeeCCC
Confidence            455555553 2      248889988766542 222211 1122233333 66677777643        5678899987


Q ss_pred             CcEEEcCCCCC-CCCCcEEEEE------------CCEEEEEeccCCCCCCCCcceEeeeeeccccccC--ceEeccCCCC
Q 020682          207 RKWDSIPPLPS-PRYSPATQLW------------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK--AWRTEIPIPR  271 (322)
Q Consensus       207 ~~W~~~~~~p~-~r~~~~~~~~------------~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~--~W~~~~~~p~  271 (322)
                      .+-...  +.. ....-..+.+            ++++++.|+.++     .+..|+++       +.  ....+.. ..
T Consensus       520 ~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~-------~~~~~~~~~~~-h~  584 (615)
T 1pgu_A          520 REVKTS--RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-----NIFIYSVK-------RPMKIIKALNA-HK  584 (615)
T ss_dssp             TEEEEC--CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-----CEEEEESS-------CTTCCEEETTS-ST
T ss_pred             CcceeE--eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC-----cEEEEECC-------CCceechhhhc-Cc
Confidence            654332  221 1122223333            677888887654     47777753       32  2222211 12


Q ss_pred             CcCceeEEEECCEEEEEecCCCC
Q 020682          272 GGPHRACFVFNDRLFVVGGQEGD  294 (322)
Q Consensus       272 ~~~~~~~~~~~~~lyv~GG~~~~  294 (322)
                      .........-+++ ++.||.++.
T Consensus       585 ~~v~~l~~s~~~~-l~s~~~d~~  606 (615)
T 1pgu_A          585 DGVNNLLWETPST-LVSSGADAC  606 (615)
T ss_dssp             TCEEEEEEEETTE-EEEEETTSC
T ss_pred             cceEEEEEcCCCC-eEEecCCce
Confidence            2222233445788 888887764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=80.85  E-value=28  Score=30.47  Aligned_cols=111  Identities=6%  Similarity=0.004  Sum_probs=57.8

Q ss_pred             CCCEEECCCC-CCCCc-ccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCC-CCCCCceeEEEE-eCCEE
Q 020682          106 DLEWEQMPSA-PVPRL-DGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLGVVS-DGRYI  181 (322)
Q Consensus       106 ~~~W~~~~~~-p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~p~~r~~~~~~~-~~~~I  181 (322)
                      ..+|+.+... +.+.. ...+....+.+|+.|..       ..+++-+=.-++|+.+.... .| .. ...++. .++.+
T Consensus        65 G~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~-~~-~~~i~~~~~~~~  135 (327)
T 2xbg_A           65 GQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLP-GS-PRLIKALGNGSA  135 (327)
T ss_dssp             TSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCS-SC-EEEEEEEETTEE
T ss_pred             CCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCC-CC-eEEEEEECCCCE
Confidence            4589988542 22222 23334456788887532       13444333357899976432 22 12 233433 46888


Q ss_pred             EEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEe
Q 020682          182 YIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMG  235 (322)
Q Consensus       182 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~G  235 (322)
                      |+.|..         ..+++-+-.-.+|+.+...... ..+.++.. ++++|++|
T Consensus       136 ~~~~~~---------g~v~~S~DgG~tW~~~~~~~~~-~~~~~~~~~~~~~~~~g  180 (327)
T 2xbg_A          136 EMITNV---------GAIYRTKDSGKNWQALVQEAIG-VMRNLNRSPSGEYVAVS  180 (327)
T ss_dssp             EEEETT---------CCEEEESSTTSSEEEEECSCCC-CEEEEEECTTSCEEEEE
T ss_pred             EEEeCC---------ccEEEEcCCCCCCEEeecCCCc-ceEEEEEcCCCcEEEEE
Confidence            887641         2344444445689998643222 22333333 45666665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=80.75  E-value=7.2  Score=34.68  Aligned_cols=106  Identities=10%  Similarity=0.125  Sum_probs=52.7

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCC---CCceeEEEEe-C-CEEEEEecccCCCCCCCCceEEEEe
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD-G-RYIYIVSGQYGPQCRGPTSRTFVLD  203 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~---~r~~~~~~~~-~-~~Iyv~GG~~~~~~~~~~~~v~~yd  203 (322)
                      +.+++.|+.+      ..+.+||..+.+-........+.   ...-.+++.. + ..+++.|+.++.     ...+..||
T Consensus       178 ~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----~~~i~~~d  246 (416)
T 2pm9_A          178 AHVFASAGSS------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-----DPSILIWD  246 (416)
T ss_dssp             TTEEEEESSS------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-----SCCCCEEE
T ss_pred             CcEEEEEcCC------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-----CceEEEEe
Confidence            5677777643      34888999877654322222100   1122333443 2 357777765431     13677888


Q ss_pred             CCCCcEEEcCCCC-CCCCCcEEEEE---CCEEEEEeccCCCCCCCCcceEee
Q 020682          204 SETRKWDSIPPLP-SPRYSPATQLW---RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       204 ~~t~~W~~~~~~p-~~r~~~~~~~~---~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ..+.. ..+..+. ........+.+   ++++++.|+.++     .+..|++
T Consensus       247 ~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-----~v~~wd~  292 (416)
T 2pm9_A          247 LRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-----TVLLWNP  292 (416)
T ss_dssp             TTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-----EEEEECS
T ss_pred             CCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-----CEEEeeC
Confidence            88753 1111222 11112222333   567777887644     3566664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=80.66  E-value=15  Score=35.71  Aligned_cols=98  Identities=12%  Similarity=0.188  Sum_probs=55.7

Q ss_pred             EEEEECCEEEEEeecCCCCCCcceeEEEEC-CCC--ceEECCCCCCC---CC---CceeEEEE--eCCE----EEEEecc
Q 020682          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNF-TDN--KWVDRFDMPKD---MA---HSHLGVVS--DGRY----IYIVSGQ  187 (322)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~~~--~W~~~~~~~~p---~~---r~~~~~~~--~~~~----Iyv~GG~  187 (322)
                      .-++.++.||+....      ...++.+|. ++-  .|+.-......   ..   ....+.++  .+++    ||+... 
T Consensus        57 tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-  129 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-  129 (599)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence            345679999998752      135889998 544  48874433210   00   11223455  6777    887532 


Q ss_pred             cCCCCCCCCceEEEEeCCCCc--EEEcCCCCC-C-CCCcEEEEECCEEEEEe
Q 020682          188 YGPQCRGPTSRTFVLDSETRK--WDSIPPLPS-P-RYSPATQLWRGRLHVMG  235 (322)
Q Consensus       188 ~~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~-~-r~~~~~~~~~~~Lyv~G  235 (322)
                              -..+..+|.+|.+  |+.-..-+. . ....+-++.++++|+-.
T Consensus       130 --------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~  173 (599)
T 1w6s_A          130 --------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGS  173 (599)
T ss_dssp             --------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECC
T ss_pred             --------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEe
Confidence                    2678999998876  885422111 0 11222345688887643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=80.48  E-value=14  Score=31.79  Aligned_cols=95  Identities=7%  Similarity=0.057  Sum_probs=53.1

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      +++||+.+..+      ..+++||+++.+...+....   ...-.+++.. ++++|+........    ...++.||+++
T Consensus        55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~---~~~~~~i~~~~dg~l~v~~~~~~~~----~~~i~~~d~~~  121 (333)
T 2dg1_A           55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSH---KANPAAIKIHKDGRLFVCYLGDFKS----TGGIFAATENG  121 (333)
T ss_dssp             TSCEEEEETTT------CEEEEECTTTCCEEEEEECS---SSSEEEEEECTTSCEEEEECTTSSS----CCEEEEECTTS
T ss_pred             CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCC---CCCcceEEECCCCcEEEEeCCCCCC----CceEEEEeCCC
Confidence            56788876532      35899999988876643221   1223445554 67788876432111    25799999988


Q ss_pred             CcEEEc-CCCCCCCCCcEEEE-ECCEEEEEe
Q 020682          207 RKWDSI-PPLPSPRYSPATQL-WRGRLHVMG  235 (322)
Q Consensus       207 ~~W~~~-~~~p~~r~~~~~~~-~~~~Lyv~G  235 (322)
                      ..-..+ ........-..++. -+++||+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  152 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD  152 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEe
Confidence            775533 32211111112222 256788754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=80.44  E-value=13  Score=32.05  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=36.8

Q ss_pred             CEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-C--CEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-G--RYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       129 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~--~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      +.+++.|+.+      ..+.++|.++.+|.....+... ...-.+++.. +  +.+++.|+.+        ..+..+|..
T Consensus        71 ~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D--------~~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYD------RKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSD--------GAISLLTYT  135 (316)
T ss_dssp             SSCEEEEETT------SCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSS--------SCEEEEEEC
T ss_pred             CCEEEEEECC------CEEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCC--------CCEEEEecC
Confidence            4566667654      2478889888777554332211 1111233333 2  5566667653        345667766


Q ss_pred             CC-cEEEc
Q 020682          206 TR-KWDSI  212 (322)
Q Consensus       206 t~-~W~~~  212 (322)
                      +. .|...
T Consensus       136 ~~~~~~~~  143 (316)
T 3bg1_A          136 GEGQWEVK  143 (316)
T ss_dssp             SSSCEEEC
T ss_pred             CCCCccee
Confidence            54 56543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=80.10  E-value=13  Score=31.84  Aligned_cols=68  Identities=13%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ++++|+.++.+      ..++++|+.+.+....-..+.  ......+++.  ++.+|+.+..        ...+..||+.
T Consensus        10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~--------~~~i~~~d~~   73 (349)
T 1jmx_B           10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNH--------YGDIYGIDLD   73 (349)
T ss_dssp             TCEEEEEEETT------TEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETT--------TTEEEEEETT
T ss_pred             CCEEEEEeCCC------CeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCC--------CCcEEEEeCC
Confidence            67888887742      468999998876543322222  0012234443  4568887632        3678999999


Q ss_pred             CCcEEE
Q 020682          206 TRKWDS  211 (322)
Q Consensus       206 t~~W~~  211 (322)
                      +.+-..
T Consensus        74 t~~~~~   79 (349)
T 1jmx_B           74 TCKNTF   79 (349)
T ss_dssp             TTEEEE
T ss_pred             CCcEEE
Confidence            887553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	4e-06
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	1e-04
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-04
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.003
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	9e-06
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-04

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 4e-06
 Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 7/144 (4%)

Query: 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGS 237
           GR IY   G +    R   S     +     W  +  L  PR   A  +  G L+ +GG 
Sbjct: 4   GRLIYTAGGYF----RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59

Query: 238 KENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMA 297
             +                  +   W    P+          V +  ++ VGG  G    
Sbjct: 60  NNSPDGNTDSSALDCYNP---MTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 116

Query: 298 KPGSPIFKCSRRHEFMVMFICWMM 321
                          +   +   +
Sbjct: 117 NSVERYEPERDEWHLVAPMLTRRI 140

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 29/196 (14%), Positives = 49/196 (25%), Gaps = 10/196 (5%)

Query: 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185
           ++  L Y   GY       S+++ YN ++  W+   D+   +  S L     G  +Y V 
Sbjct: 2   KVGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ--VPRSGLAGCVVGGLLYAVG 57

Query: 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG 245
           G+         S      +      S     S   +              G         
Sbjct: 58  GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117

Query: 246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFK 305
                   +D       W    P+          V N  L+ VGG +G          + 
Sbjct: 118 SVERYEPERDE------WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 171

Query: 306 CSRRHEFMVMFICWMM 321
                  +        
Sbjct: 172 ERNEWRMITAMNTIRS 187

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 25/212 (11%), Positives = 52/212 (24%), Gaps = 9/212 (4%)

Query: 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM 167
            W ++    VPR   A   +  L Y   G  +    ++     +  +             
Sbjct: 30  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 89

Query: 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227
              +   V          G          +     + E  +W  + P+ + R      + 
Sbjct: 90  VPRNRIGVGVIDGHIYAVGGS--HGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 147

Query: 228 RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV 287
              L+ +GG          E +             WR    +          V ++ ++ 
Sbjct: 148 NRLLYAVGGFDGTNRLNSAECYYPE-------RNEWRMITAMNTIRSGAGVCVLHNCIYA 200

Query: 288 VGGQEGDFMAKPGSPIFKCSRRHEFMVMFICW 319
            GG +G             +    F+      
Sbjct: 201 AGGYDGQDQLNSVERYDVETETWTFVAPMKHR 232

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 12/150 (8%)

Query: 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185
            +  L  +    G  D  +       +   +   R     +   S  GV      IY   
Sbjct: 143 GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAG 202

Query: 186 GQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG 245
           G      +   +     D ET  W  + P+   R +    + +GR++V+GG   +     
Sbjct: 203 GYD---GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDS 259

Query: 246 LEHWSIAVKDGKALEKAWR--TEIPIPRGG 273
           +E +             W   T +   R G
Sbjct: 260 VECYDPD-------TDTWSEVTRMTSGRSG 282

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 27/207 (13%), Positives = 53/207 (25%), Gaps = 21/207 (10%)

Query: 103 PAPDL-EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY-----VHSHVDVYNFTDNK 156
           P P L  W      P+     A         +++ Y +  +       +    ++ +   
Sbjct: 4   PQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI 63

Query: 157 WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216
             DR            G+          +GQ          +T + DS +  W   P + 
Sbjct: 64  VSDRTVTVTKHDMFCPGIS------MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ 117

Query: 217 SP-RYSPATQLWRGRLHVMGGSKEN--------RHTPGLEHWSIAVKDGKALEKAWRTEI 267
               Y  +  +  GR+  +GGS            ++P  + W+               + 
Sbjct: 118 VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 177

Query: 268 PIPRGGPHRACFVFNDRLFVVGGQEGD 294
                            +F  G     
Sbjct: 178 LYRSDNHAWLFGWKKGSVFQAGPSTAM 204

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 6/138 (4%)

Query: 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173
           +     + G  +             + +     +     + N       +          
Sbjct: 236 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSV 295

Query: 174 VVSDGRYIYIVSGQYGPQCRGPTSRTF---VLDSETRKWDSIPPLPSPRY--SPATQLWR 228
           V+ DG   +I  GQ        ++  F   +   E   +    P    R   S +  L  
Sbjct: 296 VLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 354

Query: 229 GRLHVMGGSKENRHTPGL 246
           GR+   GG      T   
Sbjct: 355 GRVFNGGGGLCGDCTTNH 372

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.97
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.84
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.13
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.32
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.21
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	91.6
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	90.99
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	90.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	90.65
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	90.48
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	89.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	89.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	88.61
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	88.61
d1tbga_	340	beta1-subunit of the signal-transducing G protein	87.26
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	86.99
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	86.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.32
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	86.27
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	85.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.64
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	83.57
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.39
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	82.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	81.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	81.14
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	80.68

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=231.35  Aligned_cols=207  Identities=19%  Similarity=0.316  Sum_probs=176.0

Q ss_pred             hhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCC---CCCcceeEEEECCCCceEECCCCCCCCCCceeE
Q 020682           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSL---DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG  173 (322)
Q Consensus        97 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~  173 (322)
                      ++++.||+.+++|+++++||.||.+|+++.++++|||+||....   ....+++++||+.+++|++++++|.  +|..|+
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~--~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccc--eeccee
Confidence            47899999999999999999999999999999999999997432   2345689999999999999999987  899999


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEee--
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI--  251 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~--  251 (322)
                      +++.+++||++||..+...   +++.+.||+.+++|...+.++.+|..|+++..++++|++||.........++.|+.  
T Consensus        97 ~~~~~~~i~~~gg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIH---HNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EEEETTEEEEECCEETTEE---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             ccccceeeEEecceecccc---cceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccc
Confidence            9999999999999876654   68899999999999999999999999999999999999999865443343443331  


Q ss_pred             --------------------------------------eeeccccccCceEeccCCCCCcCceeEEEECCEEEEEecCCC
Q 020682          252 --------------------------------------AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG  293 (322)
Q Consensus       252 --------------------------------------~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~  293 (322)
                                                            ..+.||..+++|+.++++|..+.++++++++++|||+||.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  253 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG  253 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             cccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCC
Confidence                                                  345567889999999999999998999999999999999876


Q ss_pred             CC------CCCCCCCeeeeeE
Q 020682          294 DF------MAKPGSPIFKCSR  308 (322)
Q Consensus       294 ~~------~~~p~~~~~~~~~  308 (322)
                      ..      .|||....|++..
T Consensus       254 ~~~~~~v~~yd~~~~~W~~~~  274 (288)
T d1zgka1         254 HTFLDSVECYDPDTDTWSEVT  274 (288)
T ss_dssp             SCBCCEEEEEETTTTEEEEEE
T ss_pred             CeecceEEEEECCCCEEEECC
Confidence            53      4677777766654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-26  Score=203.04  Aligned_cols=173  Identities=20%  Similarity=0.275  Sum_probs=146.6

Q ss_pred             hhhccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCC---------------------------------
Q 020682           96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDY---------------------------------  142 (322)
Q Consensus        96 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~---------------------------------  142 (322)
                      ..+++.||+.+++|+.+++||.+|..|+++.+++++|++||......                                 
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  148 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN  148 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             cchhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeee
Confidence            34789999999999999999999999999999999999998532111                                 


Q ss_pred             -------------CcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcE
Q 020682          143 -------------VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW  209 (322)
Q Consensus       143 -------------~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  209 (322)
                                   ...++++||+.+++|.....++.  .+..+++++.+++||++||.+....   +.+.+.||+.+++|
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~i~GG~~~~~~---~~~~~~~~~~~~~~  223 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--IRSGAGVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETW  223 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSSB---CCCEEEEETTTTEE
T ss_pred             ecceEecCcccccccceEEEeecccccccccccccc--ccccccccceeeeEEEecCcccccc---ccceeeeeecceee
Confidence                         12356777777777777766665  6778899999999999999876654   68999999999999


Q ss_pred             EEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEE
Q 020682          210 DSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFV  280 (322)
Q Consensus       210 ~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~  280 (322)
                      +.++++|.+|..|++++++++|||+||.+.....+++++||       +++++|+++++||++|.++++++
T Consensus       224 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd-------~~~~~W~~~~~~p~~R~~~~~~~  287 (288)
T d1zgka1         224 TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYD-------PDTDTWSEVTRMTSGRSGVGVAV  287 (288)
T ss_dssp             EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEE-------TTTTEEEEEEECSSCCBSCEEEE
T ss_pred             ecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEE-------CCCCEEEECCCCCCCcEeEEEEE
Confidence            99999999999999999999999999998766666666666       66999999999999999888765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.89  E-value=3.1e-22  Score=184.49  Aligned_cols=194  Identities=13%  Similarity=0.097  Sum_probs=141.2

Q ss_pred             hhccccccCCCCEEECCCCCCCCcccEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCC---------
Q 020682           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD---------  166 (322)
Q Consensus        97 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p---------  166 (322)
                      .++..||+.+++|+.+++||.+|..|+++.+ ++++|++||........+++++||+.+++|+.++.++.+         
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            3678999999999999999999999999887 679999999877777778899999999999986543221         


Q ss_pred             ----------------------------------------------------CCCceeEEEE--eCCEEEEEecccCCCC
Q 020682          167 ----------------------------------------------------MAHSHLGVVS--DGRYIYIVSGQYGPQC  192 (322)
Q Consensus       167 ----------------------------------------------------~~r~~~~~~~--~~~~Iyv~GG~~~~~~  192 (322)
                                                                          .++.++++..  .+++||++||......
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~  257 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  257 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCC
Confidence                                                                0111122222  2688999999765432


Q ss_pred             CCCCceEEE-----EeCCCCcEEEcCCCCCCCCCcEEEEE-CCEEEEEeccCCCCC-CCCcceEeeeeeccccccCceEe
Q 020682          193 RGPTSRTFV-----LDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRH-TPGLEHWSIAVKDGKALEKAWRT  265 (322)
Q Consensus       193 ~~~~~~v~~-----yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~Lyv~GG~~~~~~-~~~~~~~~~~v~~~~~~~~~W~~  265 (322)
                      .........     ++..++.|..+++||.+|..|+++++ +++|||+||...... ......+  +++.|||++++|+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~--~ve~Ydp~~~~W~~  335 (387)
T d1k3ia3         258 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF--TPEIYVPEQDTFYK  335 (387)
T ss_dssp             SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC--CCEEEEGGGTEEEE
T ss_pred             CcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEec--eEEEEECCCCeEEE
Confidence            211222222     34556679999999999999988887 679999999754321 1111122  23334478999999


Q ss_pred             ccCCCCCcCceeEEEE--CCEEEEEecCC
Q 020682          266 EIPIPRGGPHRACFVF--NDRLFVVGGQE  292 (322)
Q Consensus       266 ~~~~p~~~~~~~~~~~--~~~lyv~GG~~  292 (322)
                      ++++|.+|..|+++++  +++|||+||..
T Consensus       336 ~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~  364 (387)
T d1k3ia3         336 QNPNSIVRVYHSISLLLPDGRVFNGGGGL  364 (387)
T ss_dssp             CCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred             CCCCCCcccceEEEEECCCCEEEEEeCCC
Confidence            9999988877777666  88999999953

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.84  E-value=1.1e-20  Score=173.96  Aligned_cols=188  Identities=12%  Similarity=0.166  Sum_probs=138.5

Q ss_pred             hccccccCCCCEEECCCCCCCCccc--EEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDG--AAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV  174 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~  174 (322)
                      .+..||+.+++|+.+++++.+|..+  +.+.. +++||++||.+.     +++++||+.+++|+.++.|+.  +|..|++
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~~~~~--~r~~~~~  125 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQV--ARGYQSS  125 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSS--CCSSCEE
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC-----cceeEecCccCcccccccccc--cccccce
Confidence            4678999999999998888877643  33333 789999998653     358999999999999999998  7888888


Q ss_pred             EEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCC----------------------------------
Q 020682          175 VSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR----------------------------------  219 (322)
Q Consensus       175 ~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----------------------------------  219 (322)
                      +++ +++||++||.......  +++++.||+.+++|+.++.++.++                                  
T Consensus       126 ~~~~dG~v~v~GG~~~~~~~--~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~  203 (387)
T d1k3ia3         126 ATMSDGRVFTIGGSWSGGVF--EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA  203 (387)
T ss_dssp             EECTTSCEEEECCCCCSSSC--CCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE
T ss_pred             eeecCCceeeeccccccccc--cceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCC
Confidence            877 6899999997654432  689999999999999886432210                                  


Q ss_pred             -----------------------------CCcEEE--EECCEEEEEeccCCCCC-CCCcceEeeeeeccccccCceEecc
Q 020682          220 -----------------------------YSPATQ--LWRGRLHVMGGSKENRH-TPGLEHWSIAVKDGKALEKAWRTEI  267 (322)
Q Consensus       220 -----------------------------~~~~~~--~~~~~Lyv~GG~~~~~~-~~~~~~~~~~v~~~~~~~~~W~~~~  267 (322)
                                                   ..+++.  ..++++|++||...... .........+++++++..+.|+.+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (387)
T d1k3ia3         204 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN  283 (387)
T ss_dssp             EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred             cEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc
Confidence                                         111111  13578999999754322 2222333445667777788899999


Q ss_pred             CCCCCcCceeEEEE-CCEEEEEecCCCC
Q 020682          268 PIPRGGPHRACFVF-NDRLFVVGGQEGD  294 (322)
Q Consensus       268 ~~p~~~~~~~~~~~-~~~lyv~GG~~~~  294 (322)
                      +||..|..++++++ +++|||+||....
T Consensus       284 ~~p~~r~~~~~~~~~dg~i~v~GG~~~~  311 (387)
T d1k3ia3         284 GLYFARTFHTSVVLPDGSTFITGGQRRG  311 (387)
T ss_dssp             CCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred             ccccccccceeeeccCCeEEEECCcccC
Confidence            99988887777776 7799999997643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.13  E-value=0.24  Score=42.37  Aligned_cols=104  Identities=13%  Similarity=0.240  Sum_probs=59.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.+      ..+.+||..++++..+..+... ...-.+++.. ++++++.||.+        ..+..+|+.+
T Consensus        18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D--------~~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD--------RNAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT--------SCEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCC-CCCEEEEEECCCCCEEEEEECC--------CeEEEEeecc
Confidence            45666677642      3588899988888776554321 1122334443 45555556643        4677888889


Q ss_pred             CcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ++|.....+.........+.+  +++.++.|+.++     .+..|++
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~-----~i~i~~~  124 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYF  124 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEE
T ss_pred             cccccccccccccccccccccccccccceeecccC-----cceeeee
Confidence            999877544333333333333  455666665433     2455554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.32  E-value=0.62  Score=37.71  Aligned_cols=140  Identities=11%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.+      ..+.+||.++.+...+.....+  ..-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d--------~~i~~~~~~~  210 (299)
T d1nr0a2         147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTIVHP--AEITSVAFSNNGAFLVATDQS--------RKVIPYSVAN  210 (299)
T ss_dssp             TSCEEEEEETT------SEEEEEEEETTEEEEEEEEECS--SCEEEEEECTTSSEEEEEETT--------SCEEEEEGGG
T ss_pred             ccccccccccc------cccccccccccccccccccccc--ccccccccccccccccccccc--------cccccccccc
Confidence            45566666643      3578888887765554333321  112233333 44555556542        5678899887


Q ss_pred             CcEEEcC-CCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEe--ccCCCCCcCceeEEEE
Q 020682          207 RKWDSIP-PLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRT--EIPIPRGGPHRACFVF  281 (322)
Q Consensus       207 ~~W~~~~-~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~--~~~~p~~~~~~~~~~~  281 (322)
                      +...... .+......-..+.+  ++++++.||.++     .+..|+++       +.....  .........-..++..
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~-------~~~~~~~~~~~~~~~~~v~~~~~~  278 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMN-------KPSDHPIIIKGAHAMSSVNSVIWL  278 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETT-------CTTSCCEEETTSSTTSCEEEEEEE
T ss_pred             cccccccccccccccccccccccccccceEEEcCCC-----EEEEEECC-------CCCcceEEEecCCCCCcEEEEEEC
Confidence            7654432 22221111122222  567777888654     36677753       222221  1111111111133445


Q ss_pred             CCEEEEEecCCCCC
Q 020682          282 NDRLFVVGGQEGDF  295 (322)
Q Consensus       282 ~~~lyv~GG~~~~~  295 (322)
                      +++.++.||.++..
T Consensus       279 ~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         279 NETTIVSAGQDSNI  292 (299)
T ss_dssp             ETTEEEEEETTSCE
T ss_pred             CCCEEEEEeCCCEE
Confidence            66677788877643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.21  E-value=2.4  Score=34.49  Aligned_cols=123  Identities=12%  Similarity=-0.010  Sum_probs=69.0

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD  177 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~  177 (322)
                      .++.+|.......+++.  ..+.......-+++..+++|.+..    ..++++|.++.+-.++.....    .-.+++..
T Consensus        25 ~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~----~v~~~~~s   94 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLG----NVFAMGVD   94 (360)
T ss_dssp             EEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCC----SEEEEEEC
T ss_pred             eEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCc----eEEeeeec
Confidence            56777887777777642  222222222226776666654322    248899999988777654332    22334443


Q ss_pred             -CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEECCEEEEEeccC
Q 020682          178 -GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK  238 (322)
Q Consensus       178 -~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~  238 (322)
                       +++.+++++.        -..++.+|..+.+-..+...+.......+..-+++.+++++..
T Consensus        95 pdg~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          95 RNGKFAVVAND--------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             TTSSEEEEEET--------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             ccccccceecc--------ccccccccccccceeeeeecccccccchhhccceeeeeeeccc
Confidence             5555555553        2567889998887665543333333333344466666665543

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=1.8  Score=33.91  Aligned_cols=136  Identities=12%  Similarity=0.053  Sum_probs=68.3

Q ss_pred             EEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEE--C----CCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCC
Q 020682          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~----~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~  195 (322)
                      +++.+++.+|+|-|.        -+|+.+........  +    +.+|.+   ..++... .++++|++-|         
T Consensus        16 Av~~~~G~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~glp~~---IDAAf~~~~~~~~yfFkG---------   75 (195)
T d1su3a2          16 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG---LEAAYEFADRDEVRFFKG---------   75 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS---CCEEEEEGGGTEEEEEET---------
T ss_pred             EEEEcCCeEEEEeCC--------EEEEeeCCCCccCccchHhhCcCCCCc---ccceEEecCCcEEEEECC---------
Confidence            566789999999884        35555444333211  1    123321   2222222 2689999988         


Q ss_pred             CceEEEEeCCCCc---EEEcC---CCCCCCCCc-EEEEE--CCEEEEEeccCCCCCCCCcceEeeeeeccc---c--ccC
Q 020682          196 TSRTFVLDSETRK---WDSIP---PLPSPRYSP-ATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGK---A--LEK  261 (322)
Q Consensus       196 ~~~v~~yd~~t~~---W~~~~---~~p~~r~~~-~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~---~--~~~  261 (322)
                       +..++|+..+..   -..+.   .+|.....- ++..+  ++++|+|-|..       .++|+.....-+   |  ..+
T Consensus        76 -~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~~-------y~ry~~~~~~vd~gyPk~I~~  147 (195)
T d1su3a2          76 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANK-------YWRYDEYKRSMDPGYPKMIAH  147 (195)
T ss_dssp             -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTE-------EEEEETTTTEECSSCSEEHHH
T ss_pred             -cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCCE-------EEEEeccCccccCCccccccc
Confidence             677888743321   11111   123322222 33333  46899998742       233332100000   1  122


Q ss_pred             ceEeccCCCCCcCceeEEEECCEEEEEecC
Q 020682          262 AWRTEIPIPRGGPHRACFVFNDRLFVVGGQ  291 (322)
Q Consensus       262 ~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~  291 (322)
                      .|.   .+|..-.  ++...++++|+|-|.
T Consensus       148 ~w~---Gvp~~iD--AAf~~~g~~YfFkg~  172 (195)
T d1su3a2         148 DFP---GIGHKVD--AVFMKDGFFYFFHGT  172 (195)
T ss_dssp             HST---TSCSCCS--EEEEETTEEEEEETT
T ss_pred             ccC---CCCCCcc--EEEEECCeEEEEECC
Confidence            342   2444333  555679999999984

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=2.8  Score=32.72  Aligned_cols=136  Identities=14%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             EEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEE----C----CCCCCCCCCceeEEEE-eCCEEEEEecccCCCCC
Q 020682          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD----R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCR  193 (322)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~----~----~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~  193 (322)
                      +++.+++.+|+|-|.        .+|+|+........    +    +.+|.   ...++... .++++|+|-|       
T Consensus        11 Av~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~---~IDAAf~~~~~~k~yfFkg-------   72 (195)
T d1itva_          11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSG-------   72 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEET-------
T ss_pred             eEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCC---CccEEEEECCCCEEEEEec-------
Confidence            456789999999883        57777654332211    1    22332   22222222 2678999976       


Q ss_pred             CCCceEEEEeCCCCcE-EEcCC--CCCC--CCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeee---cccc--ccCce
Q 020682          194 GPTSRTFVLDSETRKW-DSIPP--LPSP--RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK---DGKA--LEKAW  263 (322)
Q Consensus       194 ~~~~~v~~yd~~t~~W-~~~~~--~p~~--r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~---~~~~--~~~~W  263 (322)
                         +.+++|+-.+-.. ..+..  +|..  +...+...-++++|+|=|..       .++|+....   ..-|  ..+.|
T Consensus        73 ---~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~~-------y~ryd~~~~~v~~gyPk~i~~~w  142 (195)
T d1itva_          73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRR-------LWRFDVKAQMVDPRSASEVDRMF  142 (195)
T ss_dssp             ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETTE-------EEEEETTTTEECGGGCEEHHHHS
T ss_pred             ---CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEeccE-------EEEEeCCcccccCCCccchhhhc
Confidence               5677776432111 12222  3332  22222222357999996642       334432100   0001  01223


Q ss_pred             EeccCCCCCcCceeEEEECCEEEEEecC
Q 020682          264 RTEIPIPRGGPHRACFVFNDRLFVVGGQ  291 (322)
Q Consensus       264 ~~~~~~p~~~~~~~~~~~~~~lyv~GG~  291 (322)
                         +.+|..-.  ++...++++|+|-|.
T Consensus       143 ---~gvp~~id--aAf~~~~~~Yffkg~  165 (195)
T d1itva_         143 ---PGVPLDTH--DVFQFREKAYFCQDR  165 (195)
T ss_dssp             ---TTSCSSCS--EEEEETTEEEEEETT
T ss_pred             ---CCCCCCCc--EEEEeCCcEEEEECC
Confidence               23454433  566779999999873

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=2.7  Score=32.56  Aligned_cols=136  Identities=13%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             EEEEECCEEEEEeecCCCCCCcceeEEEECCCCceEE--C----CCCCCCCCCceeEEEE-eCCEEEEEecccCCCCCCC
Q 020682          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--R----FDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGP  195 (322)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~----~~~~~p~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~  195 (322)
                      +++.+++++|+|-|.        .+|+++.....+..  +    +.+|.   ...++... .++++|++-|         
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~---~IDAAf~~~~~~~~yffkg---------   72 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRG---------   72 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEET---------
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCC---cccceEEEcCCCEEEEEcC---------
Confidence            566789999999883        46776655444332  1    22332   22323222 3788999887         


Q ss_pred             CceEEEEeCCCCcE---EEcCC--CCCCCCC-cEEEEE--CCEEEEEeccCCCCCCCCcceEeeeeeccc---c--ccCc
Q 020682          196 TSRTFVLDSETRKW---DSIPP--LPSPRYS-PATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGK---A--LEKA  262 (322)
Q Consensus       196 ~~~v~~yd~~t~~W---~~~~~--~p~~r~~-~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~---~--~~~~  262 (322)
                       +.+++|+..+...   +.+..  +|.+-.. -++..+  ++++|++-|..       .++|+......+   |  ....
T Consensus        73 -~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~~-------y~~y~~~~~~~~~~~pk~I~~~  144 (192)
T d1pexa_          73 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQ-------VWRYDDTNHIMDKDYPRLIEED  144 (192)
T ss_dssp             -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETTE-------EEEEETTTTEECSSCCCBHHHH
T ss_pred             -CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCCE-------EEEEcCccccccCCCcEEHhhc
Confidence             5678887554332   23332  1222111 233343  57899997642       233332100000   0  1222


Q ss_pred             eEeccCCCCCcCceeEEEECCEEEEEecC
Q 020682          263 WRTEIPIPRGGPHRACFVFNDRLFVVGGQ  291 (322)
Q Consensus       263 W~~~~~~p~~~~~~~~~~~~~~lyv~GG~  291 (322)
                      |.   .+|..- . ++...++++|+|-|.
T Consensus       145 w~---gvp~~v-d-Aa~~~~g~~YfF~g~  168 (192)
T d1pexa_         145 FP---GIGDKV-D-AVYEKNGYIYFFNGP  168 (192)
T ss_dssp             ST---TSCSCC-S-EEEEETTEEEEEETT
T ss_pred             CC---CCCCCc-e-EEEEeCCEEEEEECC
Confidence            33   234332 2 455679999999873

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.65  E-value=2.4  Score=35.61  Aligned_cols=136  Identities=11%  Similarity=0.065  Sum_probs=69.2

Q ss_pred             hccccccCCCCEEECCCCCCCCcc-cEEEEE-CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLD-GAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..||...+++..+..+...... .+++.. +++.++.||.+      ..+.++|+.+.+|......... .+.-.++.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~-~~~v~~i~  102 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLVILRI-NRAARCVR  102 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEECCCC-SSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC------CeEEEEeecccccccccccccc-cccccccc
Confidence            455666666666655443221111 122222 45556666653      2478889988888865544331 22233444


Q ss_pred             Ee-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEEEEE--CCEEEEEeccCCCCCCCCcceEee
Q 020682          176 SD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       176 ~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      .. ++..++.|+.++      .-.++.++.....+........-+..-..+.+  ++++++.|+.++     .+..|++
T Consensus       103 ~~p~~~~l~~~s~d~------~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~-----~v~v~~~  170 (371)
T d1k8kc_         103 WAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSA  170 (371)
T ss_dssp             ECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC
T ss_pred             cccccccceeecccC------cceeeeeecccccccccccccccccccccccccccccceeccccCc-----EEEEEee
Confidence            43 455555565332      24566677666666544332222222222333  456777777654     2455554

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.48  E-value=1.1  Score=35.13  Aligned_cols=89  Identities=22%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceE---ECCC-CCCCCCCceeEEEE-----eCCEEEEEecccCCCCCCCCce
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV---DRFD-MPKDMAHSHLGVVS-----DGRYIYIVSGQYGPQCRGPTSR  198 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~---~~~~-~~~p~~r~~~~~~~-----~~~~Iyv~GG~~~~~~~~~~~~  198 (322)
                      ++++|+|-|        +.+|+|+..+-...   .+.. .+.-+....++...     .++++|+|-|          +.
T Consensus        59 ~~~~yfFkG--------~~yw~y~~~~~~~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg----------~~  120 (192)
T d1qhua1          59 HTSVYLIKG--------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQG----------NR  120 (192)
T ss_dssp             TTEEEEEET--------TEEEEECC-------CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEET----------TE
T ss_pred             CCcEEEEeC--------CEEEEEeCCccccCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeC----------Ce
Confidence            579999988        46888875433321   1111 11100122222222     2789999987          67


Q ss_pred             EEEEeCCCCcEEEc--CCCCCCCCCcEEEEECCEEEEEecc
Q 020682          199 TFVLDSETRKWDSI--PPLPSPRYSPATQLWRGRLHVMGGS  237 (322)
Q Consensus       199 v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~Lyv~GG~  237 (322)
                      .+.||..+.+=.+-  +.+|  + ..++..++|++|+|-|.
T Consensus       121 yw~yd~~~~~~~~~~w~gip--~-~daA~~~~g~~YfFkg~  158 (192)
T d1qhua1         121 KWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN  158 (192)
T ss_dssp             EEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT
T ss_pred             EEEEeCCCCCcccccccCcC--C-cceeEEeCCcEEEEECC
Confidence            88999887641111  2222  2 23566789999999774

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.73  E-value=0.76  Score=36.08  Aligned_cols=123  Identities=16%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             ECCEEEEEeecCCCCCCcceeEEEECC-----CCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEE
Q 020682          127 IKNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV  201 (322)
Q Consensus       127 ~~~~lyv~GG~~~~~~~~~~v~~yd~~-----~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~  201 (322)
                      .++.+|+|-|.        .+|+.++.     ++.|..   +|.   ..-++....++++|+|-|          +.+++
T Consensus        17 ~~G~~y~Fkg~--------~~wr~~~~~p~~Is~~Wpg---lp~---~IDAaf~~~~~~~yfFkG----------~~yw~   72 (192)
T d1qhua1          17 DNGTMLFFKDE--------FVWKSHRGIRELISERWKN---FIG---PVDAAFRHGHTSVYLIKG----------DKVWV   72 (192)
T ss_dssp             TTSCEEEEETT--------EEEETTTTEEEEHHHHSTT---CCS---CCSEEEEETTTEEEEEET----------TEEEE
T ss_pred             CCCcEEEEeCC--------EEEEcCCCCeeEHhhhcCC---CCC---CccEEEEcCCCcEEEEeC----------CEEEE
Confidence            47899999774        24433221     233533   332   122222233679999987          67788


Q ss_pred             EeCCCCcEE---Ec----CCCCCCCCCcEEEEE------CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccC
Q 020682          202 LDSETRKWD---SI----PPLPSPRYSPATQLW------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP  268 (322)
Q Consensus       202 yd~~t~~W~---~~----~~~p~~r~~~~~~~~------~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~  268 (322)
                      |+..+...-   .+    +.+|..  --++..+      ++++|+|-|..       .++|+..  ...+....|..+  
T Consensus        73 y~~~~~~~gyPk~i~~~~~glp~~--iDAA~~~~~~~~~~~~~yfFkg~~-------yw~yd~~--~~~~~~~~w~gi--  139 (192)
T d1qhua1          73 YTSEKNEKVYPKSLQDEFPGIPFP--LDAAVECHRGECQDEGILFFQGNR-------KWFWDLT--TGTKKERSWPAV--  139 (192)
T ss_dssp             ECC-------CEEHHHHSTTCCSS--CCEEEEECBBTBSSSEEEEEETTE-------EEEEETT--TTEEEEECCTTS--
T ss_pred             EeCCccccCCCcChHHhCCCCCCC--ceEEEEccccccCCCeEEEEeCCe-------EEEEeCC--CCCcccccccCc--
Confidence            875443321   22    123321  2233433      68899997742       3444422  111223345444  


Q ss_pred             CCCCcCceeEEEECCEEEEEec
Q 020682          269 IPRGGPHRACFVFNDRLFVVGG  290 (322)
Q Consensus       269 ~p~~~~~~~~~~~~~~lyv~GG  290 (322)
                       |..   .+++..++++|+|-|
T Consensus       140 -p~~---daA~~~~g~~YfFkg  157 (192)
T d1qhua1         140 -GNC---TSALRWLGRYYCFQG  157 (192)
T ss_dssp             -CCC---SEEEEETTEEEEEET
T ss_pred             -CCc---ceeEEeCCcEEEEEC
Confidence             322   255667999999988

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.58  E-value=4.3  Score=32.74  Aligned_cols=93  Identities=15%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++.+|+....      ...+.+||+..+.-..+.....  ......+++. ++.||+....        ...++.||+..
T Consensus       124 ~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~--~~~~~~i~~d~~g~i~v~d~~--------~~~V~~~d~~G  187 (279)
T d1q7fa_         124 KGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFISDNR--------AHCVKVFNYEG  187 (279)
T ss_dssp             TSCEEEEETT------TTEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEEEEGG--------GTEEEEEETTC
T ss_pred             CCcEEEEeec------cceeeEeccCCceeeccccccc--ccccceeeeccceeEEeeecc--------ccceeeeecCC
Confidence            4678877542      1357888887654443322222  2334455554 5789998764        36889999987


Q ss_pred             CcEEEcCCCCCCCCCcEEEE-ECCEEEEEec
Q 020682          207 RKWDSIPPLPSPRYSPATQL-WRGRLHVMGG  236 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~~-~~~~Lyv~GG  236 (322)
                      .....+..-.....-..+++ -+|.|||...
T Consensus       188 ~~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         188 QYLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             CEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             ceeeeecccccccCCcccccccCCeEEEEEC
Confidence            76666643211111123333 3567998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.61  E-value=1.5  Score=35.43  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=35.1

Q ss_pred             ceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc
Q 020682          145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI  212 (322)
Q Consensus       145 ~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~  212 (322)
                      +.+.++|.++.+=...-+.+.. ...-.++++.  +..+|+.|+.        -..+..||..+++....
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~-~~~~~~i~~spDg~~l~v~~~~--------~~~v~v~D~~t~~~~~~   71 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNK--------SESLVKIDLVTGETLGR   71 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETT--------TTEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCC-CCCccEEEECCCCCEEEEEECC--------CCeEEEEECCCCcEEEE
Confidence            4688999998764332222211 1222234443  4578887653        26799999999886544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.61  E-value=4.9  Score=32.08  Aligned_cols=135  Identities=6%  Similarity=-0.013  Sum_probs=63.8

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      .+..++.|+.+      ..+.+||..+..-........  . .-.++.. ++..++.|+.+        ..+..||..+.
T Consensus       212 ~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~~h~--~-~v~~~~~-~~~~l~~~~~d--------g~i~iwd~~~~  273 (355)
T d1nexb2         212 ERKRCISASMD------TTIRIWDLENGELMYTLQGHT--A-LVGLLRL-SDKFLVSAAAD--------GSIRGWDANDY  273 (355)
T ss_dssp             TTTEEEEEETT------SCEEEEETTTCCEEEEECCCS--S-CCCEEEE-CSSEEEEECTT--------SEEEEEETTTC
T ss_pred             cceeeeccccc------ceEEeeecccccccccccccc--c-ccccccc-ccceeeeeecc--------ccccccccccc
Confidence            44555556543      247788888765433211111  1 1123333 44455666643        46778888766


Q ss_pred             cEEEcCCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCceeEEEECCEEEE
Q 020682          208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFV  287 (322)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~lyv  287 (322)
                      .-..... ............++++++.|. +     ..+..|+++       +++-...........-.+++..++.+++
T Consensus       274 ~~~~~~~-~~~~~~~~~~~~~~~~l~~g~-d-----~~i~vwd~~-------tg~~~~~~~~~~~~~V~~v~~~~~~~~~  339 (355)
T d1nexb2         274 SRKFSYH-HTNLSAITTFYVSDNILVSGS-E-----NQFNIYNLR-------SGKLVHANILKDADQIWSVNFKGKTLVA  339 (355)
T ss_dssp             CEEEEEE-CTTCCCCCEEEECSSEEEEEE-T-----TEEEEEETT-------TCCBCCSCTTTTCSEEEEEEEETTEEEE
T ss_pred             ceecccc-cCCceEEEEEcCCCCEEEEEe-C-----CEEEEEECC-------CCCEEEEEecCCCCCEEEEEEcCCeEEE
Confidence            5322111 112222334455677665543 2     246677753       4432111111111111244456777777


Q ss_pred             EecCCCC
Q 020682          288 VGGQEGD  294 (322)
Q Consensus       288 ~GG~~~~  294 (322)
                      .|+.+|.
T Consensus       340 ~~s~dg~  346 (355)
T d1nexb2         340 AVEKDGQ  346 (355)
T ss_dssp             EEESSSC
T ss_pred             EEECCCc
Confidence            7777765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.26  E-value=5.9  Score=31.50  Aligned_cols=124  Identities=6%  Similarity=-0.015  Sum_probs=59.3

Q ss_pred             eeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcCCCCCCCCCcEE
Q 020682          146 HVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT  224 (322)
Q Consensus       146 ~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~  224 (322)
                      .+.+||..+.+-...  +... ...-.+++.. ++.+++.|+.+        ..+..||.........-...........
T Consensus       207 ~v~i~d~~~~~~~~~--~~~h-~~~i~~v~~~p~~~~l~s~s~d--------~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         207 SAKLWDVREGMCRQT--FTGH-ESDINAICFFPNGNAFATGSDD--------ATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEEEETTTTEEEEE--ECCC-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eEEEEECCCCcEEEE--EeCC-CCCeEEEEECCCCCEEEEEeCC--------CeEEEEeecccccccccccccccCceEE
Confidence            477888876543221  1110 1111233333 45566666643        4567788877665443222222222222


Q ss_pred             EEE--CCEEEEEeccCCCCCCCCcceEeeeeeccccccCceEeccCCCCCcCce-eEEE-ECCEEEEEecCCCC
Q 020682          225 QLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR-ACFV-FNDRLFVVGGQEGD  294 (322)
Q Consensus       225 ~~~--~~~Lyv~GG~~~~~~~~~~~~~~~~v~~~~~~~~~W~~~~~~p~~~~~~-~~~~-~~~~lyv~GG~~~~  294 (322)
                      +.+  ++++++.|+.++     .+..|++.         .+..+..++...... +++. -++++++.||.++.
T Consensus       276 ~~~s~~~~~l~~g~~dg-----~i~iwd~~---------~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDF-----NCNVWDAL---------KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEECSSSCEEEEEETTS-----CEEEEETT---------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             EEECCCCCEEEEEECCC-----EEEEEECC---------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            333  456777777644     36667642         233333332111111 2222 25667778887764

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=5.4  Score=30.75  Aligned_cols=89  Identities=19%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCce---EECCC--CCCCCCCceeEEEE--eCCEEEEEecccCCCCCCCCceEE
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKW---VDRFD--MPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTF  200 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W---~~~~~--~~~p~~r~~~~~~~--~~~~Iyv~GG~~~~~~~~~~~~v~  200 (322)
                      ++++|+|-|        +.+|+|+..+-..   +.+..  +|.+..+.. ++..  .++++|++-|          +..+
T Consensus        64 ~~~~yffkg--------~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~id-aA~~~~~~~~~y~Fkg----------~~y~  124 (192)
T d1pexa_          64 HDLIFIFRG--------RKFWALNGYDILEGYPKKISELGLPKEVKKIS-AAVHFEDTGKTLLFSG----------NQVW  124 (192)
T ss_dssp             TTEEEEEET--------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCC-EEEECTTTSEEEEEET----------TEEE
T ss_pred             CCEEEEEcC--------CEEEEEcCCcccCCCCeEeeeeecCCCCCCcc-EEEEECCCCEEEEEeC----------CEEE
Confidence            789999988        4688997654433   12322  122212222 2333  2689999977          6778


Q ss_pred             EEeCCCCcEEEc---------CCCCCCCCCcEEEEECCEEEEEecc
Q 020682          201 VLDSETRKWDSI---------PPLPSPRYSPATQLWRGRLHVMGGS  237 (322)
Q Consensus       201 ~yd~~t~~W~~~---------~~~p~~r~~~~~~~~~~~Lyv~GG~  237 (322)
                      .||..++.=...         +.+|..  -.++...+|++|+|-|.
T Consensus       125 ~y~~~~~~~~~~~pk~I~~~w~gvp~~--vdAa~~~~g~~YfF~g~  168 (192)
T d1pexa_         125 RYDDTNHIMDKDYPRLIEEDFPGIGDK--VDAVYEKNGYIYFFNGP  168 (192)
T ss_dssp             EEETTTTEECSSCCCBHHHHSTTSCSC--CSEEEEETTEEEEEETT
T ss_pred             EEcCccccccCCCcEEHhhcCCCCCCC--ceEEEEeCCEEEEEECC
Confidence            898876642221         123322  23455679999999774

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=86.51  E-value=1.4  Score=35.15  Aligned_cols=63  Identities=17%  Similarity=0.344  Sum_probs=40.7

Q ss_pred             EEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe--CCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       130 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      .+||.+..+      +.+.++|+++.+....-+...    ..+++++.  +.+||+.++.        ...+.+||..+.
T Consensus         3 ~~yV~~~~~------~~v~v~D~~t~~~~~~i~~g~----~p~~va~spdG~~l~v~~~~--------~~~i~v~d~~t~   64 (301)
T d1l0qa2           3 FAYIANSES------DNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAH--------SNDVSIIDTATN   64 (301)
T ss_dssp             EEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGG--------GTEEEEEETTTT
T ss_pred             EEEEEECCC------CEEEEEECCCCeEEEEEECCC----CceEEEEeCCCCEEEEEECC--------CCEEEEEECCCC
Confidence            578876532      358899999987655333322    22345554  4678887754        267899999987


Q ss_pred             cEE
Q 020682          208 KWD  210 (322)
Q Consensus       208 ~W~  210 (322)
                      +-.
T Consensus        65 ~~~   67 (301)
T d1l0qa2          65 NVI   67 (301)
T ss_dssp             EEE
T ss_pred             cee
Confidence            643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.32  E-value=7.4  Score=31.74  Aligned_cols=185  Identities=8%  Similarity=-0.017  Sum_probs=86.4

Q ss_pred             hhccccccCCCCEEECCCCCCCCcccEEE-EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCC--CCceeE
Q 020682           97 ATFADLPAPDLEWEQMPSAPVPRLDGAAI-QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM--AHSHLG  173 (322)
Q Consensus        97 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~--~r~~~~  173 (322)
                      ..++.+|+.+++-+.. .+|.  ...+++ .-++.+++...        +.+..||+.+.+.+.+.......  -|.+..
T Consensus        40 ~~I~r~d~~~g~~~~~-~~~~--~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~  108 (295)
T d2ghsa1          40 RELHELHLASGRKTVH-ALPF--MGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELESDLPGNRSNDG  108 (295)
T ss_dssp             TEEEEEETTTTEEEEE-ECSS--CEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred             CEEEEEECCCCeEEEE-ECCC--CcEEEEEecCCCEEEEEe--------CccEEeecccceeeEEeeeecCCCcccceee
Confidence            3567777776643322 2222  212333 34677776532        24899999999988876543321  233433


Q ss_pred             EEEeCCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEcC-CCCCCCCCcEEEE-E-CCEEEEEeccCCCCCCCCcceEe
Q 020682          174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQL-W-RGRLHVMGGSKENRHTPGLEHWS  250 (322)
Q Consensus       174 ~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~-~-~~~Lyv~GG~~~~~~~~~~~~~~  250 (322)
                      .+--++.||+-.-.....    ...-..|....++-.++. .+..+  . ..+. - ++.+|+..-.     ...+++|+
T Consensus       109 ~vd~~G~iw~~~~~~~~~----~~~g~l~~~~~g~~~~~~~~~~~~--N-g~~~s~d~~~l~~~dt~-----~~~I~~~~  176 (295)
T d2ghsa1         109 RMHPSGALWIGTMGRKAE----TGAGSIYHVAKGKVTKLFADISIP--N-SICFSPDGTTGYFVDTK-----VNRLMRVP  176 (295)
T ss_dssp             EECTTSCEEEEEEETTCC----TTCEEEEEEETTEEEEEEEEESSE--E-EEEECTTSCEEEEEETT-----TCEEEEEE
T ss_pred             EECCCCCEEEEecccccc----ccceeEeeecCCcEEEEeeccCCc--c-eeeecCCCceEEEeecc-----cceeeEee
Confidence            333377788754332221    133334444455555543 12111  1 1222 2 3346665322     22355554


Q ss_pred             eeeeccccccCce----EeccCCC--CCcCceeEEE-ECCEEEEEecC-CCCCCCCCCCCeeeeeEee
Q 020682          251 IAVKDGKALEKAW----RTEIPIP--RGGPHRACFV-FNDRLFVVGGQ-EGDFMAKPGSPIFKCSRRH  310 (322)
Q Consensus       251 ~~v~~~~~~~~~W----~~~~~~p--~~~~~~~~~~-~~~~lyv~GG~-~~~~~~~p~~~~~~~~~~~  310 (322)
                      ++     +.....    ......+  .+.. .++++ -+|.||+..-. ....+|+|...+.......
T Consensus       177 ~d-----~~~~~~~~~~~~~~~~~~~~g~p-dG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP  238 (295)
T d2ghsa1         177 LD-----ARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP  238 (295)
T ss_dssp             BC-----TTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred             ec-----ccccccccceEEEeccCcccccc-cceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCC
Confidence            32     222221    1111111  1222 13333 46678876421 2355678876665555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.27  E-value=2.6  Score=34.36  Aligned_cols=93  Identities=8%  Similarity=-0.005  Sum_probs=51.9

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR  207 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~  207 (322)
                      +++++++++.       .++++||.++....++.   ++ .+.......-+++..++.|.+.      -..++.+|.++.
T Consensus        14 dG~~~a~~~~-------g~v~v~d~~~~~~~~~~---~~-~~v~~~~~spDg~~l~~~~~~~------g~~v~v~d~~~~   76 (360)
T d1k32a3          14 DGDLIAFVSR-------GQAFIQDVSGTYVLKVP---EP-LRIRYVRRGGDTKVAFIHGTRE------GDFLGIYDYRTG   76 (360)
T ss_dssp             GGGCEEEEET-------TEEEEECTTSSBEEECS---CC-SCEEEEEECSSSEEEEEEEETT------EEEEEEEETTTC
T ss_pred             CCCEEEEEEC-------CeEEEEECCCCcEEEcc---CC-CCEEEEEECCCCCEEEEEEcCC------CCEEEEEECCCC
Confidence            4555555542       36888999888887763   22 3333222223666665555322      145889999999


Q ss_pred             cEEEcCCCCCCCCCcEEEEECCEEEEEeccC
Q 020682          208 KWDSIPPLPSPRYSPATQLWRGRLHVMGGSK  238 (322)
Q Consensus       208 ~W~~~~~~p~~r~~~~~~~~~~~Lyv~GG~~  238 (322)
                      +-.++..-+... ......-+++.+++++.+
T Consensus        77 ~~~~~~~~~~~v-~~~~~spdg~~l~~~~~~  106 (360)
T d1k32a3          77 KAEKFEENLGNV-FAMGVDRNGKFAVVANDR  106 (360)
T ss_dssp             CEEECCCCCCSE-EEEEECTTSSEEEEEETT
T ss_pred             cEEEeeCCCceE-Eeeeecccccccceeccc
Confidence            888775432221 111222356666666553

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=3.3  Score=32.23  Aligned_cols=90  Identities=18%  Similarity=0.195  Sum_probs=54.0

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCce-EECCC--CCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKW-VDRFD--MPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS  204 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~--~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~  204 (322)
                      ++++|+|-|        +.+|+|+-.+-.. +.+..  +|.+..+..++....++++|+|-|          +..++||.
T Consensus        64 ~~k~yfFkg--------~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG----------~~y~ryd~  125 (195)
T d1itva_          64 SKKLFFFSG--------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG----------RRLWRFDV  125 (195)
T ss_dssp             TCCEEEEET--------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET----------TEEEEEET
T ss_pred             CCEEEEEec--------CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec----------cEEEEEeC
Confidence            578999977        3688887432111 12222  333223333333334689999977          67899998


Q ss_pred             CCCcEEEc---------CCCCCCCCCcEEEEECCEEEEEecc
Q 020682          205 ETRKWDSI---------PPLPSPRYSPATQLWRGRLHVMGGS  237 (322)
Q Consensus       205 ~t~~W~~~---------~~~p~~r~~~~~~~~~~~Lyv~GG~  237 (322)
                      .+++=.+-         +.+|.  .-.++..+++++|++-|.
T Consensus       126 ~~~~v~~gyPk~i~~~w~gvp~--~idaAf~~~~~~Yffkg~  165 (195)
T d1itva_         126 KAQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQDR  165 (195)
T ss_dssp             TTTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEETT
T ss_pred             CcccccCCCccchhhhcCCCCC--CCcEEEEeCCcEEEEECC
Confidence            87653321         12333  345667789999999774

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.64  E-value=7.7  Score=35.02  Aligned_cols=96  Identities=19%  Similarity=0.278  Sum_probs=57.8

Q ss_pred             EEEEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCC------CCCCceeEEEEeCCEEEEEecccCCCCCC
Q 020682          123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPK------DMAHSHLGVVSDGRYIYIVSGQYGPQCRG  194 (322)
Q Consensus       123 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~------p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~  194 (322)
                      .=++.+++|||..+.       ..++.+|.++-+  |+.-+..+.      .........+..+++||+...        
T Consensus        61 tPiv~~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------  125 (560)
T d1kv9a2          61 TPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------  125 (560)
T ss_dssp             CCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--------
T ss_pred             CCEEECCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC--------
Confidence            335779999998653       368888888654  875322211      001223356667888887643        


Q ss_pred             CCceEEEEeCCCCc--EEEcC-CCCC-CCCCcEEEEECCEEEEE
Q 020682          195 PTSRTFVLDSETRK--WDSIP-PLPS-PRYSPATQLWRGRLHVM  234 (322)
Q Consensus       195 ~~~~v~~yd~~t~~--W~~~~-~~p~-~r~~~~~~~~~~~Lyv~  234 (322)
                       -..++.+|.+|.+  |+... .... ......-.+.++.+++-
T Consensus       126 -~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg  168 (560)
T d1kv9a2         126 -DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIG  168 (560)
T ss_dssp             -TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEEC
T ss_pred             -CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCccccc
Confidence             2678899988875  77643 2211 22233455778877763

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=8.7  Score=30.21  Aligned_cols=104  Identities=9%  Similarity=0.145  Sum_probs=56.0

Q ss_pred             EECCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCC
Q 020682          126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE  205 (322)
Q Consensus       126 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~  205 (322)
                      ..++..++.|+.+      ..+.+||..+.+-........   ..-.++...++ +++.|+.+        ..+..||..
T Consensus       184 ~~~~~~l~s~~~d------g~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~~~-~l~s~s~d--------~~i~iwd~~  245 (342)
T d2ovrb2         184 QFDGIHVVSGSLD------TSIRVWDVETGNCIHTLTGHQ---SLTSGMELKDN-ILVSGNAD--------STVKIWDIK  245 (342)
T ss_dssp             EECSSEEEEEETT------SCEEEEETTTCCEEEEECCCC---SCEEEEEEETT-EEEEEETT--------SCEEEEETT
T ss_pred             cCCCCEEEEEeCC------CeEEEeecccceeeeEecccc---cceeEEecCCC-EEEEEcCC--------CEEEEEecc
Confidence            3455556666643      247788887665433222111   12233444455 45556542        567889988


Q ss_pred             CCcEEEc-CCCCCCCCCcEEEEECCEEEEEeccCCCCCCCCcceEeee
Q 020682          206 TRKWDSI-PPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIA  252 (322)
Q Consensus       206 t~~W~~~-~~~p~~r~~~~~~~~~~~Lyv~GG~~~~~~~~~~~~~~~~  252 (322)
                      +.+-... ...............++.+++.|+.++     .+..|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg-----~i~iwd~~  288 (342)
T d2ovrb2         246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG-----TVKLWDLK  288 (342)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS-----EEEEEETT
T ss_pred             cccccccccccceeeeceeecccCCCeeEEEcCCC-----EEEEEECC
Confidence            7664433 322222333344566777888888654     36677753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.39  E-value=7.2  Score=35.35  Aligned_cols=93  Identities=18%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             EEECCEEEEEeecCCCCCCcceeEEEECCCCc--eEECCCCCC------CCCCceeEEEEeCCEEEEEecccCCCCCCCC
Q 020682          125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPK------DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPT  196 (322)
Q Consensus       125 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~------p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~  196 (322)
                      ++.+++||+....       ..++++|.++-+  |+.-+..+.      .......+.++.++++|+...         -
T Consensus        74 iv~~g~vyv~t~~-------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~---------~  137 (573)
T d1kb0a2          74 VVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW---------D  137 (573)
T ss_dssp             EEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT---------T
T ss_pred             EEECCEEEEECCC-------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec---------c
Confidence            4679999997643       357888887654  775332211      001233456777888887542         2


Q ss_pred             ceEEEEeCCCCc--EEEcC-CCCCC--CCCcEEEEECCEEEE
Q 020682          197 SRTFVLDSETRK--WDSIP-PLPSP--RYSPATQLWRGRLHV  233 (322)
Q Consensus       197 ~~v~~yd~~t~~--W~~~~-~~p~~--r~~~~~~~~~~~Lyv  233 (322)
                      ..++.+|.+|.+  |+.-. ..+..  .....-+++++.+++
T Consensus       138 g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv  179 (573)
T d1kb0a2         138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII  179 (573)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE
T ss_pred             cceeeeccccccceecccCccCCcceEEeecceEEEeccEEE
Confidence            678899988876  87642 22221  122334577888765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=3.3  Score=33.99  Aligned_cols=95  Identities=8%  Similarity=0.032  Sum_probs=46.3

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++..++.|+.+      ..+.+||....+......+... .......+.. ++.+++.++.+        ..+..+|..+
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d--------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEeecc------cccccccccccccccccccccc-cccccccccccccccccccccc--------cccccccccc
Confidence            55666777754      3588889887665544333221 1122233333 45555555532        4677888887


Q ss_pred             CcEEEcCCCCCCCCCcEEE-EECCEEEEEeccC
Q 020682          207 RKWDSIPPLPSPRYSPATQ-LWRGRLHVMGGSK  238 (322)
Q Consensus       207 ~~W~~~~~~p~~r~~~~~~-~~~~~Lyv~GG~~  238 (322)
                      .+-........... ..++ ..++..++.|+.+
T Consensus       173 ~~~~~~~~~~~~~v-~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         173 QTLVRQFQGHTDGA-SCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             TEEEEEECCCSSCE-EEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccc-cccccccccccccccccc
Confidence            66333322111111 1121 2345566677654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.84  E-value=3.7  Score=33.62  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=34.7

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEEEe-CCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      ++++++.|+.+      ..+.+||..+.+......+... ...-.+++.. +++.++.+|.+..      ..+.++|.++
T Consensus        69 ~g~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~~~~~------~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVH------GNVRIWDTTQTTHILKTTIPVF-SGPVKDISWDSESKRIAAVGEGRE------RFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETT------SEEEEEESSSTTCCEEEEEECS-SSCEEEEEECTTSCEEEEEECCSS------CSEEEEETTT
T ss_pred             CCCeEeccccC------ceEeeeeeeccccccccccccc-cCcccccccccccccccccccccc------cccccccccc
Confidence            56677777764      3588889887765432222211 1111233333 4555666653221      3345666665


Q ss_pred             Cc
Q 020682          207 RK  208 (322)
Q Consensus       207 ~~  208 (322)
                      .+
T Consensus       136 ~~  137 (311)
T d1nr0a1         136 GT  137 (311)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=10  Score=29.73  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=52.1

Q ss_pred             CCEEEEEeecCCCCCCcceeEEEECCCCceEE-CCCCCCCCCCceeEEEEeCCEEEEEecccCCCCCCCCceEEEEeCCC
Q 020682          128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD-RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET  206 (322)
Q Consensus       128 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t  206 (322)
                      .+.+++.|+.+      ..+.+||....+-.. +.....  ..........++.+++.|+.+        ..+..||+++
T Consensus       226 ~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~s~D--------g~i~iwd~~t  289 (342)
T d2ovrb2         226 KDNILVSGNAD------STVKIWDIKTGQCLQTLQGPNK--HQSAVTCLQFNKNFVITSSDD--------GTVKLWDLKT  289 (342)
T ss_dssp             ETTEEEEEETT------SCEEEEETTTCCEEEEECSTTS--CSSCEEEEEECSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEcCC------CEEEEEecccccccccccccce--eeeceeecccCCCeeEEEcCC--------CEEEEEECCC
Confidence            44455666643      247888987765433 222221  112222233455566667643        5688899998


Q ss_pred             CcEEE-cCCCCCCCC-Cc--EEEEEC-CEEEEEeccCCCCCCCCcceEee
Q 020682          207 RKWDS-IPPLPSPRY-SP--ATQLWR-GRLHVMGGSKENRHTPGLEHWSI  251 (322)
Q Consensus       207 ~~W~~-~~~~p~~r~-~~--~~~~~~-~~Lyv~GG~~~~~~~~~~~~~~~  251 (322)
                      ++-.+ +...+.... ..  .+..-. +.+++.|+.++.. ...+..||+
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~-~~~l~~~Df  338 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE-ETKLLVLDF  338 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS-CCEEEEEEC
T ss_pred             CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC-eeEEEEEeC
Confidence            77532 322222111 11  122223 4566677665532 223455554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=80.68  E-value=2.2  Score=33.85  Aligned_cols=95  Identities=17%  Similarity=0.232  Sum_probs=49.9

Q ss_pred             hccccccCCCCEEECCCCCCCCcccEEEEE--CCEEEEEeecCCCCCCcceeEEEECCCCceEECCCCCCCCCCceeEEE
Q 020682           98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV  175 (322)
Q Consensus        98 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~p~~r~~~~~~  175 (322)
                      .+..+|..+.+..+.  ++....-+.++.-  +.+||+.++.+      ..+.+||.++.+-...  ++.  ...-+.++
T Consensus        13 ~v~v~D~~t~~~~~~--i~~g~~p~~va~spdG~~l~v~~~~~------~~i~v~d~~t~~~~~~--~~~--~~~~~~~~   80 (301)
T d1l0qa2          13 NISVIDVTSNKVTAT--IPVGSNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIAT--VPA--GSSPQGVA   80 (301)
T ss_dssp             EEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEE--EEC--SSSEEEEE
T ss_pred             EEEEEECCCCeEEEE--EECCCCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCceeee--eec--cccccccc
Confidence            456677766654432  2222222233332  45788876532      3689999987764332  222  12223444


Q ss_pred             Ee--CCEEEEEecccCCCCCCCCceEEEEeCCCCcEEEc
Q 020682          176 SD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI  212 (322)
Q Consensus       176 ~~--~~~Iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~  212 (322)
                      ..  +..+++.+..        ...+..+|..+.+-...
T Consensus        81 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          81 VSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             ECTTSSEEEEEETT--------TTEEEEEETTTTEEEEE
T ss_pred             cccccccccccccc--------cceeeecccccceeeee
Confidence            43  3456654432        25667788887764443