Citrus Sinensis ID: 020698

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTEDPTNNSEVMSSGGHLVSEKGESE
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccEEccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHcEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccEEEccccccccccccccccccHccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEEHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLVSRFFRVYtqwrwpnpvmmcpiemgelgfsvwdprknpkdrshrmpiitpayhcmnssykvSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQdtngllqchpypnkyidpskpcpnsaffwglsrkevgtskecqqfdfQGTVKNFRRgidnyrvrregrdiYFSYVCrrhlpsfvfpdgykwhrpsrhfneqsgkpcedvkmcqscsseRQLKRkkeheikevrpdksvkqafissevpqpvspgmttedptnnsevmssgghlvsekgese
Flexible Loop (DISEMBL)
MLVSRFFRvytqwrwpnpvMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGtskecqqfdfqgtvknfrrgidnyrvrreGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFneqsgkpcedVKMCQSCSserqlkrkkeheikevrpdksvkqafissevpqpvspgmttedptnnsevmssgghlvsekgese
Low Complexity Region (SEG)
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVaadaddLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTEDPTNNSEVMSSGGHLVSEKGESE
Disordered region (IsUnstruct)
**VSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWD***********MPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR****************************************************************************************
Disordered Region (DISOPRED)
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLS**************FQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFP***********************************************************************************************
Disordered Region (DISEMBL)
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN*****************************IKEVRPDKSVKQAFISSEVPQPVSPGMTTEDP*********************
Disordered Region (DISPRO)
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPD**********************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTEDPTNNSEVMSSGGHLVSEKGESE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q54J73	809	Poly(A) polymerase OS=Dic	yes	no	0.804	0.320	0.333	2e-37
P51005	484	Poly(A) polymerase alpha-	N/A	no	0.711	0.473	0.373	2e-34
P51004	715	Poly(A) polymerase alpha-	N/A	no	0.711	0.320	0.381	2e-34
P25500	739	Poly(A) polymerase alpha	yes	no	0.857	0.373	0.323	5e-34
Q61183	739	Poly(A) polymerase alpha	yes	no	0.850	0.370	0.331	1e-33
P51003	745	Poly(A) polymerase alpha	yes	no	0.857	0.370	0.319	1e-33
Q9BWT3	736	Poly(A) polymerase gamma	no	no	0.658	0.288	0.346	3e-33
Q6PCL9	739	Poly(A) polymerase gamma	no	no	0.658	0.286	0.341	6e-33
Q9WVP6	641	Poly(A) polymerase beta O	no	no	0.835	0.419	0.325	1e-32
Q9NRJ5	636	Poly(A) polymerase beta O	no	no	0.677	0.342	0.385	1e-32

>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 143/276 (51%), Gaps = 17/276 (6%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++ RFF+VY  W+WP P+++C I E G LG  VW+P++   D++H MPIITPAY  MNS+
Sbjct: 302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPIITPAYPSMNST 358

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TLQ+M  +F  G  I  +IE G+  W  L E   FF  Y  Y+++D  + + +D
Sbjct: 359 YNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEED 418

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYI-------DPSKPCPNSAFFWGLS 173
              W+GW+ES+ R L   +E  T  +    PYP  +        +P + C  ++FF GLS
Sbjct: 419 SRKWEGWIESKLRFLISNLES-TPKMKFAVPYPKGFTNNLHKANNPDQIC--TSFFMGLS 475

Query: 174 RKEVGTSKECQQFDFQGTVKNFRRGIDNY---RVRREGRDIYFSYVCRRHLPSFVFPDGY 230
                T    +  D    V  F   I ++   +   +  DI   Y+ ++ LP+FV  +G 
Sbjct: 476 FNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEGP 535

Query: 231 KWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKK 266
           +    +      +G+P    K  +S +S+ +L   K
Sbjct: 536 EEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPK 571

Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9

>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 18  LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 77

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I +EI L KAEWS LF+   FF+ Y++Y+ +   A      
Sbjct: 78  NVSVSTRAVMVEEFKQGLAITDEILLVKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQR 137

Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
           L W G VES+ R L   +E++   +   H  P  +  PS+      F   W  GL  K++
Sbjct: 138 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPSPSENSEKEEFRTMWVIGLVFKKM 196

Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRH----LPSFVFPDGY 230
             S+       +D Q       R   N ++      I   +V R+     LPS V P   
Sbjct: 197 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFETEIKIAAMHVKRKQLHQLLPSHVLPKKK 256

Query: 231 K 231
           K
Sbjct: 257 K 257

Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor (CPSF).

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/241 (38%), Positives = 123/241 (51%), Gaps = 12/241 (4%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 250 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 309

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I +EI LGKAEWS LF+   FF+ Y++Y+ +   A      
Sbjct: 310 NVSVSTRAVMIEEFKQGLAITDEILLGKAEWSKLFDAPNFFQKYKHYILLLASAPTEKQR 369

Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
           L W G VES+ R L   +E++    L  H  P  +  PS+      F   W  GL  K++
Sbjct: 370 LEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEFRTMWVIGLVFKKM 428

Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL----PSFVFPDGY 230
             S+       +D Q       R   N ++      I   +V R+ L    PS V P   
Sbjct: 429 ENSENLSVDLTYDIQSFTDTVDRQAINSKMFETEMKIAAMHVKRKQLHQLQPSHVSPKKK 488

Query: 231 K 231
           K
Sbjct: 489 K 489

Polymerase that creates the 3'-poly(A) tail of mRNA's. May acquire specificity through interaction with a cleavage and polyadenylation factor (CPSF).

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 15/291 (5%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +   A      
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
           L W G VES+ R L   +E++   T   +    +P    +P K    + +  GL  K+  
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTE 447

Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRP 235
            S+       +D Q       R   N ++      I   +V R+ L   +         P
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL---------P 498

Query: 236 SRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
           S    ++     E VK+     S   L    ++ +    P  ++K + ++S
Sbjct: 499 SHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549

Polymerase that creates the 3'-poly(A) tail of mRNA's. Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 139/293 (47%), Gaps = 19/293 (6%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +   A      
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--GLSRKE 176
           L W G VES+ R L   +E++   +   H  P  +  P K  P+   F   W  GL  K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAP-KESPDREEFRTMWVIGLVFKK 445

Query: 177 VGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWH 233
              S+       +D Q       R   N ++      I   +V R+ L   +        
Sbjct: 446 TENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL-------- 497

Query: 234 RPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
            PS    ++     E VK+     S   L    ++ +    P  ++K + ++S
Sbjct: 498 -PSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNS 549

Polymerase that creates the 3'-poly(A) tail of mRNA's. Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 137/291 (47%), Gaps = 15/291 (5%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +   A      
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
           L W G VES+ R L   +E++   T   +    +P    +P K    + +  GL  K+  
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTE 447

Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRP 235
            S+       +D Q       R   N ++      I   +V R+ L   +         P
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL---------P 498

Query: 236 SRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS 286
           +    ++     E VK+     S   L    ++ +    P  + K + ++S
Sbjct: 499 NHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNS 549

Polymerase that creates the 3'-poly(A) tail of mRNA's. Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 22/234 (9%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS  T  VM E+F+ G  + +EI  GK++WS L E   FF+ Y +Y+ +   A+  ++ 
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386

Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYP--------NKYIDPSKPCPNSAFFW 170
           L W G VES+ R L   +E++   T   +    +P        N Y+        S +F 
Sbjct: 387 LEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYV--------SMWFL 438

Query: 171 GLSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
           G+  + V  ++       +D Q       R  +N  + +EG  I  ++V ++ L
Sbjct: 439 GIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQL 492

Responsible for the post-transcriptional adenylation of the 3'-terminal of mRNA precursors and several small RNAs including signal recognition particle (SRP) RNA, nuclear 7SK RNA, U2 small nuclear RNA, and ribosomal 5S RNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 22/234 (9%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 267 LVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 326

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS  T  VM E+F+ G  + +EI  GK++WS L E   FF+ Y +Y+ +   A+  ++ 
Sbjct: 327 NVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENH 386

Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYP--------NKYIDPSKPCPNSAFFW 170
           L W G VES+ R L   +E++   T   +    +P        N Y+        S +F 
Sbjct: 387 LEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKANNYV--------SMWFL 438

Query: 171 GLSRKEVGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
           G+  + V  ++       +D Q       R  +N  + ++G  I  ++V ++ L
Sbjct: 439 GIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQL 492

Responsible for the post-transcriptional adenylation of the 3'-terminal of mRNA precursors and several small RNAs including signal recognition particle (SRP) RNA, nuclear 7SK RNA, U2 small nuclear RNA, and ribosomal 5S RNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 132/286 (46%), Gaps = 17/286 (5%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I  EI L KAEWS LFE   FF+ Y++Y+ +   A      
Sbjct: 328 NVSVSTRMVMIEEFKQGLAITHEILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQH 387

Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
           L W G VES+ R L   +E++    L  H  P  +  P +      F   W  GL  K+ 
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKETADKEEFRTMWVIGLVLKKP 446

Query: 178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
             S+       +D Q       R   N ++      I   ++ R+ L   +         
Sbjct: 447 ENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRRKELHQLL--------- 497

Query: 235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVK 280
           P+    ++     E V++     S   L    E+ +    P  ++K
Sbjct: 498 PNHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAPSPTGTMK 543

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            VS+ T  VM E+F+ G  I  EI L KAEWS LFE   FF+ Y++Y+ +   A+     
Sbjct: 328 NVSISTRMVMIEEFKQGLAITHEILLSKAEWSKLFEAPSFFQKYKHYIVLLASASTEKQH 387

Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFF---W--GLSRKE 176
           L W G VES+ R L   +E++    L  H  P  +  P K  P+   F   W  GL  K+
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAP-KENPDMEEFRTMWVIGLGLKK 445

Query: 177 VGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
              S+       +D Q       R   N ++   G  I   ++ R+ L
Sbjct: 446 PDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMGMKITAMHLRRKEL 493

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
255550972	754	Poly(A) polymerase beta, putative [Ricin	0.925	0.395	0.657	1e-105
356515639	732	PREDICTED: poly(A) polymerase-like [Glyc	0.913	0.401	0.621	1e-103
225442450	770	PREDICTED: poly(A) polymerase-like [Viti	0.909	0.380	0.610	1e-102
356507941	651	PREDICTED: poly(A) polymerase-like [Glyc	0.962	0.476	0.576	1e-102
147790301	778	hypothetical protein VITISV_011285 [Viti	0.909	0.376	0.610	1e-101
297825665	788	nucleotidyltransferase family protein [A	0.925	0.378	0.621	1e-101
334184470	797	poly(A) polymerase 2 [Arabidopsis thalia	0.925	0.373	0.611	1e-100
297802710	748	poly(A) polymerase [Arabidopsis lyrata s	0.913	0.393	0.620	1e-100
449461393	863	PREDICTED: poly(A) polymerase-like [Cucu	0.922	0.344	0.627	1e-100
18400958	800	poly(A) polymerase 2 [Arabidopsis thalia	0.925	0.372	0.611	1e-100

>gi|255550972|ref|XP_002516534.1| Poly(A) polymerase beta, putative [Ricinus communis] gi|223544354|gb|EEF45875.1| Poly(A) polymerase beta, putative [Ricinus communis]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/298 (65%), Positives = 233/298 (78%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGF VWDPR+NP+DR H MPIITPAY CMNSS
Sbjct: 275 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDPRRNPRDRFHHMPIITPAYPCMNSS 334

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS+ TL+VM EQFQ GN+ICEEIEL KA+WSALFE Y FFEAY+NYLQ+DI+AADADD
Sbjct: 335 YNVSISTLRVMMEQFQYGNKICEEIELNKAQWSALFEPYLFFEAYKNYLQIDIIAADADD 394

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL WKGWVESR RQLTLKIE+DT G+LQCHPYPN+YID SK CP+ AFF GL R++  + 
Sbjct: 395 LLAWKGWVESRLRQLTLKIERDTIGMLQCHPYPNEYIDTSKQCPHCAFFMGLQRRKGVSG 454

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +E QQFD +GTV+ FR+ I+ Y   + G D+Y S+  RR LP+FVFPDGYK  R SRH N
Sbjct: 455 QEGQQFDIRGTVEEFRQEINMYMFWKPGMDVYVSHARRRQLPAFVFPDGYKRSRTSRHPN 514

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTT 298
           +Q+GKP +     ++ S E  LKRK +HE+ +VRPDK  K+A +S +  Q VSP   T
Sbjct: 515 QQAGKPSDVSATSRAGSVEGHLKRKNDHEVVDVRPDKPEKRASVSPQRLQSVSPESNT 572

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515639|ref|XP_003526506.1| PREDICTED: poly(A) polymerase-like [Glycine max]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/296 (62%), Positives = 223/296 (75%), Gaps = 2/296 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGF +WDPR+NP+DR H MPIITPAY CMNSS
Sbjct: 272 MLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSS 331

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VM +QF  GN+IC+EIEL KA+WSALF+ Y FFEAY+NYLQVDI+A+D DD
Sbjct: 332 YNVSASTLRVMVDQFCYGNKICDEIELNKAQWSALFQPYIFFEAYKNYLQVDIIASDTDD 391

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL W+GWVESR R LTLKIE+DTNG+LQCHPYP++Y+D SKPC +SAFF GL RKE    
Sbjct: 392 LLAWRGWVESRLRMLTLKIERDTNGMLQCHPYPHEYVDTSKPCAHSAFFMGLQRKEGVRG 451

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +E QQFD +GTV  FR+ I+ Y   + G DI+ S+V R+ LP+FVFPDGYK  R  RH +
Sbjct: 452 QEGQQFDIRGTVDEFRQEINMYMYWKPGMDIFVSHVRRKQLPAFVFPDGYKRTRMPRHIS 511

Query: 241 EQSGKPCEDVKMCQSCS--SERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSP 294
            Q+    +D   C S    SER +KRK   E+ + +PDK  K+A IS +  + VSP
Sbjct: 512 HQAEITGDDATNCYSGPGLSERCIKRKNYSEMVDKKPDKPDKRASISPQRLECVSP 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442450|ref|XP_002277939.1| PREDICTED: poly(A) polymerase-like [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/298 (61%), Positives = 220/298 (73%), Gaps = 5/298 (1%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGFSVWDPRKNP+DR+H MPIITPAY CMNSS
Sbjct: 267 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHHMPIITPAYPCMNSS 326

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS+ TL+VM EQFQ GN+ICE IEL  A+W ALFE Y FFE+Y+NYLQVDIVA D DD
Sbjct: 327 YNVSISTLRVMMEQFQYGNKICEGIELSNAQWGALFEPYLFFESYKNYLQVDIVAVDIDD 386

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           L  WKGWVESR RQLTL IE+DT G LQCHPYP++Y+D SK C + AFF GL RK+    
Sbjct: 387 LRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPHEYVDTSKQCSHCAFFMGLQRKQGEII 446

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +E QQFD +GTV  FR  I+ Y   + G +IY S+V R+ +PS+VFP+GYK  RP R  N
Sbjct: 447 QEGQQFDIRGTVDEFRHSINMYMFWKPGMEIYVSHVRRKQIPSYVFPEGYKRSRPQRPVN 506

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTT 298
           +Q G      + C++ SSE+ +KRKK+ E  +V  DK+ K+  IS +    VSP + +
Sbjct: 507 QQQGD-----EACRTGSSEKHMKRKKDPEEVDVEQDKAAKRLTISPQRQDSVSPEIIS 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507941|ref|XP_003522721.1| PREDICTED: poly(A) polymerase-like [Glycine max]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/338 (57%), Positives = 235/338 (69%), Gaps = 28/338 (8%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGF +WDPR+NP+DR H MPIITPAY CMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSS 330

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VM EQF+ GN+IC+EIEL KA+WSALF+ Y FFEAY+NYLQVDI+A+DADD
Sbjct: 331 YNVSASTLRVMMEQFRYGNKICDEIELNKAQWSALFQPYIFFEAYKNYLQVDIIASDADD 390

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL W+GWVESR R LTLKIE+DTNG+LQCHPYPN+Y+D SK C +SAFF GL RKE    
Sbjct: 391 LLAWRGWVESRLRLLTLKIERDTNGMLQCHPYPNEYVDTSKLCAHSAFFMGLQRKEGVRG 450

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +E QQFD +GTV  FR+ I+ Y   + G DI+ S+V R+ LP+FVFP GYK  R  RH +
Sbjct: 451 QEGQQFDIRGTVDEFRQEINMYMYWKPGMDIFVSHVRRKQLPAFVFPGGYKRTRMPRHIS 510

Query: 241 EQSGKPCEDVKMC----QSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSP-- 294
            Q+ K  +D   C     S SSER +KRK   E+ + +P K  K+A IS +  + VSP  
Sbjct: 511 HQAEKTGDDATKCYSGSGSGSSERCIKRKSCPEMVDKKPGKPDKRASISPQRLECVSPES 570

Query: 295 ----------------------GMTTEDPTNNSEVMSS 310
                                 G TT+D  +N EV SS
Sbjct: 571 CTSKSGGTTQMSIECIEVVRLAGSTTKDANDNCEVKSS 608

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790301|emb|CAN69980.1| hypothetical protein VITISV_011285 [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/298 (61%), Positives = 220/298 (73%), Gaps = 5/298 (1%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGFSVWDPRKNP+DR+H MPIITPAY CMNSS
Sbjct: 258 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFSVWDPRKNPRDRTHHMPIITPAYPCMNSS 317

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS+ TL+VM EQFQ GN+ICE IEL  A+W ALFE Y FFE+Y+NYLQVDIVA D DD
Sbjct: 318 YNVSISTLRVMMEQFQYGNKICEGIELSNAQWGALFEPYLFFESYKNYLQVDIVAVDIDD 377

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           L  WKGWVESR RQLTL IE+DT G LQCHPYP++Y+D SK C + AFF GL RK+    
Sbjct: 378 LRAWKGWVESRLRQLTLMIERDTFGKLQCHPYPHEYVDTSKQCSHCAFFMGLQRKQGEII 437

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +E QQFD +GTV  FR  I+ Y   + G +IY S+V R+ +PS+VFP+GYK  RP R  N
Sbjct: 438 QEGQQFDIRGTVDEFRHSINMYMFWKPGMEIYVSHVRRKQIPSYVFPEGYKRSRPQRPVN 497

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTT 298
           +Q G      + C++ SSE+ +KRKK+ E  +V  DK+ K+  IS +    VSP + +
Sbjct: 498 QQQGD-----EACRTGSSEKHMKRKKDPEEVDVEQDKAAKRLTISPQRQDSVSPEIIS 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825665|ref|XP_002880715.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326554|gb|EFH56974.1| nucleotidyltransferase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/301 (62%), Positives = 219/301 (72%), Gaps = 3/301 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVY QWRWPNPVM+C IE  EL F VWDPRKN +DR H MPIITPAY CMNSS
Sbjct: 272 MLVSRFFRVYIQWRWPNPVMLCTIEEDELSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 331

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VMTEQFQ GN IC+EIEL K +WS+LFE Y FFEAY+NYLQVD++A DA+D
Sbjct: 332 YNVSQSTLRVMTEQFQFGNTICQEIELNKQQWSSLFEQYMFFEAYKNYLQVDVLALDAED 391

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D SK   + AFF GL R E    
Sbjct: 392 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKKFRHCAFFMGLQRAEGFGG 451

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +ECQQFD +GTV  FR+ ++ Y   R G D+Y S+V RR LPSFVFP GYK  R SRH N
Sbjct: 452 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVYVSHVRRRQLPSFVFPKGYKRPRQSRHQN 511

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS---EVPQPVSPGMT 297
           +Q  +P E V    S S +   KRK ++E  + RP+K  K+A  S    +   PVS G+T
Sbjct: 512 QQCREPGEGVVGSLSDSVDGYAKRKNDNETMDTRPEKREKRASRSPHSLDAVSPVSSGIT 571

Query: 298 T 298
           T
Sbjct: 572 T 572

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184470|ref|NP_001189603.1| poly(A) polymerase 2 [Arabidopsis thaliana] gi|330252670|gb|AEC07764.1| poly(A) polymerase 2 [Arabidopsis thaliana]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/301 (61%), Positives = 220/301 (73%), Gaps = 3/301 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  +L F VWDPRKN +DR H MPIITPAY CMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VMTEQFQ GN IC+EIEL K  WS+LF+ Y FFEAY+NYLQVD++AADA+D
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D SK   + AFF GL R +    
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +ECQQFD +GTV  FR+ ++ Y   R G D++ S+V RR LPSFVFP+GYK  R SRH +
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQS 510

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFIS---SEVPQPVSPGMT 297
           +Q  +P ++     S S ER  KRK + EI   RP+K  K+A  S    +   P S G+T
Sbjct: 511 QQCREPGDEGVGSLSDSVERYAKRKNDDEIMNSRPEKREKRASCSLHTLDAASPDSSGIT 570

Query: 298 T 298
           T
Sbjct: 571 T 571

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802710|ref|XP_002869239.1| poly(A) polymerase [Arabidopsis lyrata subsp. lyrata] gi|297315075|gb|EFH45498.1| poly(A) polymerase [Arabidopsis lyrata subsp. lyrata]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/295 (62%), Positives = 217/295 (73%), Gaps = 1/295 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGF VWDPRKN +DR H MPIITPAY CMNSS
Sbjct: 268 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 327

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VMTEQFQ GN I +EIEL K  WS+LFE Y FFEAY+NYLQVDIVA DA+D
Sbjct: 328 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAGDAED 387

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D ++   + AFF GL R E    
Sbjct: 388 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 447

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +ECQQFD +GTV  FR+ ++ Y   + G D++ S+V RR LP FVFP+GY+  R SRH N
Sbjct: 448 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSRHQN 507

Query: 241 EQSGKPCEDVKMCQSCS-SERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSP 294
           +  GK  ED  +  S S  ER  KRK + E+ + RP+K  K+A +S +    VSP
Sbjct: 508 QPGGKSGEDGTVSHSGSVVERHAKRKNDSEMMDARPEKPEKRASLSPQSLDIVSP 562

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461393|ref|XP_004148426.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/301 (62%), Positives = 218/301 (72%), Gaps = 4/301 (1%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  ELGF VWDPR+NP+DR H MPIITPAY CMNSS
Sbjct: 267 MLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDPRRNPRDRFHLMPIITPAYPCMNSS 326

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VM EQF+ GN ICEEI+L KA+WSALFE Y FFE Y+NYLQVDI+AADADD
Sbjct: 327 YNVSTSTLRVMMEQFRYGNSICEEIDLSKAQWSALFEPYLFFETYKNYLQVDIIAADADD 386

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL WKGWVESRFRQLTLKIE+DT G+LQCHPYP +Y D SKPC + AFF GL RKE    
Sbjct: 387 LLAWKGWVESRFRQLTLKIERDTRGMLQCHPYPIEYSDTSKPCSHCAFFMGLQRKEGLRG 446

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +  QQFD +GTV  FR+ I+ Y   + G DIY S+V R+ LP+FVFPDG+K  +P RH  
Sbjct: 447 QGGQQFDIRGTVDEFRQEINMYAFWKPGMDIYVSHVRRKQLPTFVFPDGHKRAKPLRHEG 506

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSPGMTTED 300
           +Q    C D+   QS  +E+  KRK +HE +E    K  KQA IS    Q   P     D
Sbjct: 507 QQVDTVCADMLQDQSGITEKGKKRKSDHEEEE----KEKKQALISPPAEQSPMPEFFGGD 562

Query: 301 P 301
           P
Sbjct: 563 P 563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400958|ref|NP_565611.1| poly(A) polymerase 2 [Arabidopsis thaliana] gi|31747891|gb|AAF66438.2|AF255297_1 nuclear poly(A) polymerase [Arabidopsis thaliana] gi|14532700|gb|AAK64151.1| putative poly(A) polymerase [Arabidopsis thaliana] gi|18491197|gb|AAL69501.1| putative poly(A) polymerase [Arabidopsis thaliana] gi|20197361|gb|AAC42245.2| putative poly(A) polymerase [Arabidopsis thaliana] gi|330252667|gb|AEC07761.1| poly(A) polymerase 2 [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/301 (61%), Positives = 220/301 (73%), Gaps = 3/301 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           MLVSRFFRVYTQWRWPNPVM+C IE  +L F VWDPRKN +DR H MPIITPAY CMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS  TL+VMTEQFQ GN IC+EIEL K  WS+LF+ Y FFEAY+NYLQVD++AADA+D
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
           LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D SK   + AFF GL R +    
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query: 181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
           +ECQQFD +GTV  FR+ ++ Y   R G D++ S+V RR LPSFVFP+GYK  R SRH +
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQS 510

Query: 241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFIS---SEVPQPVSPGMT 297
           +Q  +P ++     S S ER  KRK + EI   RP+K  K+A  S    +   P S G+T
Sbjct: 511 QQCREPGDEGVGSLSDSVERYAKRKNDDEIMNSRPEKREKRASCSLHTLDAASPDSSGIT 570

Query: 298 T 298
           T
Sbjct: 571 T 571

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2043560	800	PAPS2 "poly(A) polymerase 2" [	0.925	0.372	0.594	4.3e-93
TAIR|locus:2134113	765	nPAP "nuclear poly(a) polymera	0.913	0.384	0.606	1.5e-92
TAIR|locus:2030943	713	PAPS1 "poly(A) polymerase 1" [	0.717	0.323	0.525	1.2e-63
DICTYBASE|DDB_G0288259	809	papA "poly(A) polymerase" [Dic	0.804	0.320	0.336	9.5e-34
ZFIN|ZDB-GENE-040426-1256	744	papolg "poly(A) polymerase gam	0.894	0.387	0.329	9e-33
UNIPROTKB|G3V2A0	475	PAPOLA "Poly(A) polymerase alp	0.906	0.614	0.313	9.8e-32
UNIPROTKB|Q3T0A2	693	PAPOLA "Poly(A) polymerase alp	0.906	0.421	0.316	2.4e-31
UNIPROTKB|G3MYA2	718	PAPOLA "Poly(A) polymerase alp	0.906	0.406	0.316	2.7e-31
UNIPROTKB|P25500	739	PAPOLA "Poly(A) polymerase alp	0.906	0.395	0.316	2.9e-31
UNIPROTKB|G3XAH6	724	PAPOLA "Poly(A) polymerase alp	0.906	0.403	0.313	7.4e-31

TAIR|locus:2043560 PAPS2 "poly(A) polymerase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 179/301 (59%), Positives = 214/301 (71%)

Query:     1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
             MLVSRFFRVYTQWRWPNPVM+C IE  +L F VWDPRKN +DR H MPIITPAY CMNSS
Sbjct:   271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query:    61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
             Y VS  TL+VMTEQFQ GN IC+EIEL K  WS+LF+ Y FFEAY+NYLQVD++      
Sbjct:   331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query:   121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
             LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D SK   + AFF GL R +    
Sbjct:   391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query:   181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
             +ECQQFD +GTV  FR+ ++ Y   R G D++ S+V RR LPSFVFP+GYK  R SRH +
Sbjct:   451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSRHQS 510

Query:   241 EQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISS---EVPQPVSPGMT 297
             +Q  +P ++     S S ER  KRK + EI   RP+K  K+A  S    +   P S G+T
Sbjct:   511 QQCREPGDEGVGSLSDSVERYAKRKNDDEIMNSRPEKREKRASCSLHTLDAASPDSSGIT 570

Query:   298 T 298
             T
Sbjct:   571 T 571

GO:0003723 "RNA binding" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0031123 "RNA 3'-end processing" evidence=IEA

GO:0043631 "RNA polyadenylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006397 "mRNA processing" evidence=RCA

TAIR|locus:2134113 nPAP "nuclear poly(a) polymerase" [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 179/295 (60%), Positives = 211/295 (71%)

Query:     1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
             MLVSRFFRVYTQWRWPNPVM+C IE  ELGF VWD RKN +DR H MPIITPAY CMNSS
Sbjct:   269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query:    61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
             Y VS  TL+VMTEQFQ GN I +EIEL K  WS+LFE Y FFEAY+NYLQVDIV      
Sbjct:   329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query:   121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
             LL WKGWVESRFRQLTLKIE+DTNG+L CHP PN+Y+D ++   + AFF GL R E    
Sbjct:   389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query:   181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPSRHFN 240
             +ECQQFD +GTV  FR+ ++ Y   + G D++ S+V RR LP FVFP+GY+  R SRH N
Sbjct:   449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSRHQN 508

Query:   241 EQSGKPCEDVKMCQSCSS-ERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQPVSP 294
                GK  ED  +  S S  ER  KRK + E+ +VRP+K  K+A +S +    VSP
Sbjct:   509 LPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSPQSLDIVSP 563

GO:0003723 "RNA binding" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0031123 "RNA 3'-end processing" evidence=IEA

GO:0043631 "RNA polyadenylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2030943 PAPS1 "poly(A) polymerase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 124/236 (52%), Positives = 159/236 (67%)

Query:     1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
             +LVSRFFRV+ QW WPN + +C  + G LG  VWDPR NPKDR H MPIITPAY CMNSS
Sbjct:   259 ILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPIITPAYPCMNSS 318

Query:    61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
             Y VS  TL++M  +FQ GN ICE +E  KA+W  LFE + FFEAY+NYLQ+DI       
Sbjct:   319 YNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYLQIDISAANVDD 378

Query:   121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGTS 180
             L  WKGWVESR RQLTLKIE+    +L CHP+P+ + D S+P  + ++F GL RK+   +
Sbjct:   379 LRKWKGWVESRLRQLTLKIERHFK-MLHCHPHPHDFQDTSRPL-HCSYFMGLQRKQGVPA 436

Query:   181 KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPS 236
              E +QFD + TV+ F+  ++ Y +   G +I   ++ RR LP+FVFP G    RPS
Sbjct:   437 AEGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPGGV---RPS 489

GO:0003723 "RNA binding" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043631 "RNA polyadenylation" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

DICTYBASE|DDB_G0288259 papA "poly(A) polymerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 376 (137.4 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 93/276 (33%), Positives = 141/276 (51%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPI-EMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
             ++ RFF+VY  W+WP P+++C I E G LG  VW+P++   D++H MPIITPAY  MNS+
Sbjct:   302 IIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLMPIITPAYPSMNST 358

Query:    61 YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXX 120
             Y VS  TLQ+M  +F  G  I  +IE G+  W  L E   FF  Y  Y+++D        
Sbjct:   359 YNVSKSTLQLMKSEFVRGAEITRKIETGECTWKNLLEKCDFFTRYSFYIEIDCYSMNEED 418

Query:   121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYP-------NKYIDPSKPCPNSAFFWGLS 173
                W+GW+ES+ R L   +E  T  +    PYP       +K  +P + C  ++FF GLS
Sbjct:   419 SRKWEGWIESKLRFLISNLES-TPKMKFAVPYPKGFTNNLHKANNPDQIC--TSFFMGLS 475

Query:   174 RKEVGTSKECQQFDFQGTVKNFRRGIDNY-RVRR--EGRDIYFSYVCRRHLPSFVFPDGY 230
                  T    +  D    V  F   I ++ R +   +  DI   Y+ ++ LP+FV  +G 
Sbjct:   476 FNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEGP 535

Query:   231 KWHRPSRHFNEQSGKPCEDVKMCQSCSSERQLKRKK 266
             +    +      +G+P    K  +S +S+ +L   K
Sbjct:   536 EEPVKTTKKRSSTGEPSATRKKLKSENSDNKLNSPK 571

GO:0043631 "RNA polyadenylation" evidence=IEA

GO:0031123 "RNA 3'-end processing" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IBA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA;ISS;IBA

GO:0003723 "RNA binding" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=ISS;IBA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)]

 Score = 366 (133.9 bits), Expect = 9.0e-33, P = 9.0e-33
 Identities = 103/313 (32%), Positives = 154/313 (49%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
             LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct:   269 LVHKFFLVFSKWEWPNPVLLKQPEDSNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 328

Query:    62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
              VS  T  +M E+F+ G  + +EI  GKA+WS LFE   FF+ Y +Y+ +          
Sbjct:   329 NVSTSTRTIMNEEFKNGLTVTDEILQGKADWSKLFEPPNFFQQYRHYIVLTASASTEENH 388

Query:   122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN-----SAFFWGLSRKE 176
             L W G VES+ R L   +E++    L  H  P  +   SK   N     S +F G+S K+
Sbjct:   389 LEWIGLVESKIRVLVGNLERNEYITL-AHVNPQSF-PGSKENRNENDFVSMWFIGISFKK 446

Query:   177 VGTSKECQQFDFQGTVKNFR----RGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKW 232
             +  S +C   D    +++F     R   N  + ++G  I  ++V ++ L  ++ P+  + 
Sbjct:   447 LDNS-DCVNIDLTYDIQSFTDTVYRQASNINMLKDGMTIEATHVKKKQLHHYLPPELVQR 505

Query:   233 HRPSR-HFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFISSEVPQP 291
              + S    N  S       K C   SS  QL   ++ +I    P  S       + + +P
Sbjct:   506 KKKSLGDINRSSNGGGS--KRCSLDSS--QLDSSRDTDIGT--PFSS------PTPISKP 553

Query:   292 VSPGMTTEDPTNN 304
               P  T ED +++
Sbjct:   554 CQPASTPEDNSSS 566

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0043631 "RNA polyadenylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA;IBA

GO:0031123 "RNA 3'-end processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IBA

GO:0006378 "mRNA polyadenylation" evidence=IBA

UNIPROTKB|G3V2A0 PAPOLA "Poly(A) polymerase alpha" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 98/313 (31%), Positives = 142/313 (45%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
             LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct:    18 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 77

Query:    62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
              VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct:    78 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 137

Query:   122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
             L W G VES+ R L   +E++   +   H  P  +  P +      F   W  GL  K+ 
Sbjct:   138 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 196

Query:   178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
               S+       +D Q       R   N ++      I   +V R+ L   +         
Sbjct:   197 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 247

Query:   235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
             P+    ++     E VK+     S   L    ++ +    P  + K + +    SS+   
Sbjct:   248 PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRN 307

Query:   291 PVSPGMTTEDPTN 303
               +P +T    TN
Sbjct:   308 SPAPAVTAASVTN 320

GO:0003723 "RNA binding" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0043631 "RNA polyadenylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q3T0A2 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 2.4e-31, P = 2.4e-31
 Identities = 99/313 (31%), Positives = 143/313 (45%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
             LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct:   268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query:    62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
              VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct:   328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query:   122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
             L W G VES+ R L   +E++   +   H  P  +  P +      F   W  GL  K+ 
Sbjct:   388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446

Query:   178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
               S+       +D Q       R   N ++      I   +V R+ L   +         
Sbjct:   447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497

Query:   235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
             PS    ++     E VK+     S   L    ++ +    P  ++K + +    SS+   
Sbjct:   498 PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRN 557

Query:   291 PVSPGMTTEDPTN 303
               +P +T    TN
Sbjct:   558 SPAPAVTAASVTN 570

GO:0043631 "RNA polyadenylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G3MYA2 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 2.7e-31, P = 2.7e-31
 Identities = 99/313 (31%), Positives = 143/313 (45%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
             LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct:   268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query:    62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
              VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct:   328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query:   122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
             L W G VES+ R L   +E++   +   H  P  +  P +      F   W  GL  K+ 
Sbjct:   388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446

Query:   178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
               S+       +D Q       R   N ++      I   +V R+ L   +         
Sbjct:   447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497

Query:   235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
             PS    ++     E VK+     S   L    ++ +    P  ++K + +    SS+   
Sbjct:   498 PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRN 557

Query:   291 PVSPGMTTEDPTN 303
               +P +T    TN
Sbjct:   558 SPAPAVTAASVTN 570

GO:0043631 "RNA polyadenylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|P25500 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 99/313 (31%), Positives = 143/313 (45%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
             LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct:   268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query:    62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
              VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct:   328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query:   122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
             L W G VES+ R L   +E++   +   H  P  +  P +      F   W  GL  K+ 
Sbjct:   388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446

Query:   178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
               S+       +D Q       R   N ++      I   +V R+ L   +         
Sbjct:   447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497

Query:   235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
             PS    ++     E VK+     S   L    ++ +    P  ++K + +    SS+   
Sbjct:   498 PSHVLQKKKKHSTEGVKLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRN 557

Query:   291 PVSPGMTTEDPTN 303
               +P +T    TN
Sbjct:   558 SPAPAVTAASVTN 570

GO:0005524 "ATP binding" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0043631 "RNA polyadenylation" evidence=IDA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=IBA

GO:0006369 "termination of RNA polymerase II transcription" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IBA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G3XAH6 PAPOLA "Poly(A) polymerase alpha" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 7.4e-31, P = 7.4e-31
 Identities = 98/313 (31%), Positives = 142/313 (45%)

Query:     2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
             LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct:   268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327

Query:    62 KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
              VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct:   328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387

Query:   122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAF--FW--GLSRKEV 177
             L W G VES+ R L   +E++   +   H  P  +  P +      F   W  GL  K+ 
Sbjct:   388 LEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKT 446

Query:   178 GTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHR 234
               S+       +D Q       R   N ++      I   +V R+ L   +         
Sbjct:   447 ENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL--------- 497

Query:   235 PSRHFNEQSGKPCEDVKMCQSCSSERQLKRKKEHEIKEVRPDKSVKQAFI----SSEVPQ 290
             P+    ++     E VK+     S   L    ++ +    P  + K + +    SS+   
Sbjct:   498 PNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSATKTSPLNSSGSSQGRN 557

Query:   291 PVSPGMTTEDPTN 303
               +P +T    TN
Sbjct:   558 SPAPAVTAASVTN 570

GO:0003723 "RNA binding" evidence=IEA

GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA

GO:0043631 "RNA polyadenylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!
4th Layer	2.7.7.19	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034292001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (742 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037665001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (740 aa)					•	•	•		0.503
	GSVIVG00038486001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (1448 aa)					•	•	•		0.478

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
PTZ00418	593	PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona	3e-55
pfam04928	349	pfam04928, PAP_central, Poly(A) polymerase central	3e-48
COG5186	552	COG5186, PAP1, Poly(A) polymerase [RNA processing	2e-40
pfam04926	141	pfam04926, PAP_RNA-bind, Poly(A) polymerase predic	7e-37

>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional

 Score =  188 bits (480), Expect = 3e-55
 Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 17/240 (7%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEM-----GELGFSVWDPRKNPKDRSHRMPIITPAYHC 56
           L+ +FFRVY+ W W NPV++C I+      G + F VWDPR NP+DR+H MPIITPA+  
Sbjct: 301 LIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIITPAFPS 360

Query: 57  MNSSYKVSLGTLQVMTEQFQCGNRICEEIEL-GKAEWSALFEHYPFFEAYENYLQVDIVA 115
           MNS++ V+  T +V+TE+F+  + I + IE   +  W+ + E   FF +Y+++L + + A
Sbjct: 361 MNSTHNVTYTTKRVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLVIQVYA 420

Query: 116 ADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYI---DPSKPCPNSAFFWGL 172
            +      W+GW+ES+ R L  K+E  T   L+  PYP  +    D       S+FF GL
Sbjct: 421 TNEHVHNKWEGWIESKIRFLIKKLE--TLNNLKIRPYPKFFKYQDDGWDYA--SSFFIGL 476

Query: 173 SRKEVGTSKECQQFDFQGTVKNFRRGIDNYRVRREGRD---IYFSYVCRRHLPSFVFPDG 229
                        FD +  +++F   I+N+    +  D   I   Y+ +  LP+FV    
Sbjct: 477 VFFS-KNVYNNSTFDLRYAIRDFVDIINNWPEMEKYPDQIDINIKYLKKSQLPAFVLSQT 535

Length = 593

>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain

 Score =  164 bits (418), Expect = 3e-48
 Identities = 58/97 (59%), Positives = 72/97 (74%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
            LV +FFR+++QW+WPNPV++ PIE G L F VWDPR  P DR H MPIITPAY  MNS+
Sbjct: 251 TLVRKFFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPIITPAYPSMNST 310

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFE 97
           + V+  TL+V+TE+F+ G  I  EI LGKA WS LFE
Sbjct: 311 HNVTRSTLKVITEEFKRGLEITSEILLGKAPWSDLFE 347

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349

>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification]

 Score =  148 bits (375), Expect = 2e-40
 Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           +V +FF + + W WP PV++ PIE G L   VW+P+  P D+ HRMP+ITPAY  M +++
Sbjct: 255 IVCKFFEILSSWNWPQPVILKPIEDGPLQVRVWNPKVYPSDKYHRMPVITPAYPSMCATH 314

Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDL 121
            ++  T  V+  +F   ++I  +IE    +W  LFE   FF  Y+ YL++  +++  +D 
Sbjct: 315 NITNSTQHVILMEFVRAHKILSDIERNALDWRRLFEKSDFFSRYKLYLEITAMSSCEEDF 374

Query: 122 LTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCP 164
           L W+G VES+ R L  K+E   + +L  HP+P K       C 
Sbjct: 375 LKWEGLVESKIRILVSKLEA-VDDILYAHPFP-KAFRKVYNCV 415

Length = 552

>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain

 Score =  128 bits (325), Expect = 7e-37
 Identities = 48/144 (33%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 100 PFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKY--- 156
            FF  Y++YLQ+   A + +D L W GWVES+ R L LK+E    G+   HP+P  +   
Sbjct: 1   DFFTKYKHYLQITASAKNEEDHLKWSGWVESKLRLLVLKLE-RVEGIKLAHPFPKGFEED 59

Query: 157 --IDPSKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYR-VRREGRDIYF 213
              + SK    ++FF GL  K+    +  ++ D    ++ F+  + ++   R  G DI  
Sbjct: 60  ESDEESKEIYTTSFFIGLELKK-KKEEGSKKLDITYAIQEFKDIVRSWPQYRPPGMDIEI 118

Query: 214 SYVCRRHLPSFVFPDGYKWHRPSR 237
            +V R+ LP FVFP+G +  RP +
Sbjct: 119 KHVKRKDLPDFVFPEGEQ--RPKK 140

Based on its similarity structurally to the RNA recognition motif this domain is thought to be RNA binding. Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG2245	562	consensus Poly(A) polymerase and related nucleotid	100.0
PTZ00418	593	Poly(A) polymerase; Provisional	100.0
COG5186	552	PAP1 Poly(A) polymerase [RNA processing and modifi	100.0
PF04926	157	PAP_RNA-bind: Poly(A) polymerase predicted RNA bin	100.0
PF04928	254	PAP_central: Poly(A) polymerase central domain; In	100.0
PF03813	972	Nrap: Nrap protein; InterPro: IPR005554 Members of	92.68

>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]

Probab=100.00  E-value=2.6e-70  Score=540.85  Aligned_cols=231  Identities=46%  Similarity=0.850  Sum_probs=213.7

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      +||+|||++||+|+||+||+|+++++++||++|||||.|++||+|+|||||||||+||||||||+||++||++||+||++
T Consensus       262 ~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~Ef~~g~~  341 (562)
T KOG2245|consen  262 TLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEEFKRGLE  341 (562)
T ss_pred             HHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccCCCchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCCC
Q 020698           81 ICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPS  160 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~  160 (322)
                      ||++|+.++.+|++|||+++||.+|||||+|+++|.++|++.+|.||||||+|+|+.+||++ ..++.|||+|+.|.+..
T Consensus       342 I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~-~~i~~ahp~P~~f~~~~  420 (562)
T KOG2245|consen  342 ICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERN-QVILIAHPNPKKFKDTY  420 (562)
T ss_pred             HHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhh-cceEEecCCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999996 57788999999998764


Q ss_pred             C----CCCceeEEEceeecccCCCCcCcccchHHHHHHHHHhhc----cccccCCC--eEEEEEEeccCCCCCCcCCCCc
Q 020698          161 K----PCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGID----NYRVRREG--RDIYFSYVCRRHLPSFVFPDGY  230 (322)
Q Consensus       161 ~----~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~~~v~----~~~~~~~~--m~i~v~~vkr~~LP~~V~~~g~  230 (322)
                      .    ..+.+.|||||.+.++.      ++||+..+++|...++    ++..+.+|  |++.+.|+||++|+.+++..++
T Consensus       421 ~~~~~~~~~~~~~igl~~~e~~------~~Dlt~~iq~f~~~v~~q~~~~~~~~~g~~~~~~~~~~krr~l~~~~~~~~l  494 (562)
T KOG2245|consen  421 NCPLEEDPESLWFIGLEFDENV------KIDLTKDIQSFKKNVERQAVNLTLIKAGCDVEIDFGHVKRRSLIQTITKEFL  494 (562)
T ss_pred             cCCcccchhHhhhhcccccccc------cchhhhhHHHhhhhhhhcceeeeeeecccccccccccccccccccccCHHHh
Confidence            2    23467899999987654      4899999999999887    45556788  8888889999999999999998


Q ss_pred             ccCCCCCC
Q 020698          231 KWHRPSRH  238 (322)
Q Consensus       231 ~~~~~~~~  238 (322)
                      ++.+.-++
T Consensus       495 ~~~k~~~~  502 (562)
T KOG2245|consen  495 RLCKQYKK  502 (562)
T ss_pred             hHHHhhcc
Confidence            87776654

>PTZ00418 Poly(A) polymerase; Provisional

Probab=100.00  E-value=2.5e-68  Score=542.08  Aligned_cols=234  Identities=35%  Similarity=0.665  Sum_probs=214.5

Q ss_pred             ChhHHHHHhhccCCCCCceecccccc-----CCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEM-----GELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQF   75 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~-----~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef   75 (322)
                      +||++||.+|++|+||+||+|+++++     |.+|++||||+.|++||+|+|||||||||+||||||||.||+++|++||
T Consensus       300 ~Lv~~FF~iys~W~Wp~PV~L~~i~~~~~~~g~~~~~VWdPr~~~~dr~h~MPIITPayP~mNst~nVt~sT~~vI~~Ef  379 (593)
T PTZ00418        300 QLIHKFFRVYSIWNWKNPVLLCKIKEVPNIPGLMNFKVWDPRVNPQDRAHLMPIITPAFPSMNSTHNVTYTTKRVITEEF  379 (593)
T ss_pred             HHHHHHHHHhhcCCCCCCeEcccccccccCCcccCCcccCCCCCcccccccCCeecCCCCCccccccccHHHHHHHHHHH
Confidence            58999999999999999999999876     6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc-CccchhhhccCCCchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCC
Q 020698           76 QCGNRICEEIEL-GKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPN  154 (322)
Q Consensus        76 ~Rg~~i~~~i~~-~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~  154 (322)
                      +||++||++|.. ++.+|++||++++||.+|++||+|++.+.+++++..|.||||||||.|+.+||+.  +.+.|||||+
T Consensus       380 ~Ra~~i~~~i~~~~~~~W~~Lfep~~Ff~~Yk~yl~V~v~a~~~~~~~~w~G~VESRlR~Lv~~LE~~--~~i~~~p~P~  457 (593)
T PTZ00418        380 KRAHEIIKYIEKNSENTWTNVLEPLDFFTSYKHFLVIQVYATNEHVHNKWEGWIESKIRFLIKKLETL--NNLKIRPYPK  457 (593)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHcCCcchhhhcceEEEEEEEECCHHHhhhhhhHHHHHHHHHHHHhhcc--CCceEeecCc
Confidence            999999999998 8999999999999999999999999999999999999999999999999999974  3467899999


Q ss_pred             CCCCCCC-CCCceeEEEceeecccCCCCcCcccchHHHHHHHHHhhccccc---cCCCeEEEEEEeccCCCCCCcCCCCc
Q 020698          155 KYIDPSK-PCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRV---RREGRDIYFSYVCRRHLPSFVFPDGY  230 (322)
Q Consensus       155 ~f~d~~~-~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~~~v~~~~~---~~~~m~i~v~~vkr~~LP~~V~~~g~  230 (322)
                      +|.+... ..|.++|||||+++.... .+..++||+.++++|.+.|++|..   |.++|+|+|+|||++|||++||++|.
T Consensus       458 ~f~~~~~~~~~~~~ffIGL~~~~~~~-~~~~~~Dl~~~~~~F~~~i~~~~~~~~~~~~~~i~v~~Vk~~~Lp~~v~~~~~  536 (593)
T PTZ00418        458 FFKYQDDGWDYASSFFIGLVFFSKNV-YNNSTFDLRYAIRDFVDIINNWPEMEKYPDQIDINIKYLKKSQLPAFVLSQTP  536 (593)
T ss_pred             ccccCCCCceeEEEEEEeEeeccCCC-CCCceEecHHHHHHHHHHHHhhhhcccCCCCceEEEEEeehHhCCHhhccCCC
Confidence            9987653 356789999999976543 233589999999999999998863   56789999999999999999999998


Q ss_pred             ccCCCCC
Q 020698          231 KWHRPSR  237 (322)
Q Consensus       231 ~~~~~~~  237 (322)
                      +|+.+.+
T Consensus       537 ~~~~~~~  543 (593)
T PTZ00418        537 EEPVKTK  543 (593)
T ss_pred             cCCCccc
Confidence            8876655

>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]

Probab=100.00  E-value=3.4e-61  Score=462.23  Aligned_cols=232  Identities=33%  Similarity=0.642  Sum_probs=212.7

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      .||+|||.++|+|+||+||+|+||+||+++++||||++|++|++|.|||||||||+||+|||+|.||..||..||-||++
T Consensus       254 vIv~kFF~ils~WnWPqPviLkPieDgplqvrvWnPKvYpsDk~HRMPvITPAYPSMCATHNit~STq~vIl~EfvRa~~  333 (552)
T COG5186         254 VIVCKFFEILSSWNWPQPVILKPIEDGPLQVRVWNPKVYPSDKYHRMPVITPAYPSMCATHNITNSTQHVILMEFVRAHK  333 (552)
T ss_pred             hHHHHHHHHHHhcCCCCCeEeeeccCCCeeEEeeCCccCcccccccCccccCCchhhhhhccccchhhhhHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccCCCchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCC-
Q 020698           81 ICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDP-  159 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~-  159 (322)
                      |+++|+.+..+|..||+..+||.+||+||.|++.+.++|++.+|.|+||||+|.|+.+||.. .+++.|||||+.|... 
T Consensus       334 I~~di~~n~~~w~~lFek~DFF~RYk~yleitA~s~~~E~~lKW~GlvESKiR~Lv~klE~v-d~i~~AhPF~K~F~~~y  412 (552)
T COG5186         334 ILSDIERNALDWRRLFEKSDFFSRYKLYLEITAMSSCEEDFLKWEGLVESKIRILVSKLEAV-DDILYAHPFPKAFRKVY  412 (552)
T ss_pred             hhhhHhhccccHHHHHHhhhHHHHHhHhhhhhhhhcchhhhhhhhhHHHHHHHHHHHHHHHh-hhhhhcCcCChhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999985 5778899999999510 


Q ss_pred             -------------------------------C-----------CCCCceeEEEceeecccCCCCcCcccchHHHHHHHHH
Q 020698          160 -------------------------------S-----------KPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRR  197 (322)
Q Consensus       160 -------------------------------~-----------~~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~~  197 (322)
                                                     +           -..|.+.|||||++....   .++++||..++++|.+
T Consensus       413 ~c~~Ee~~e~i~~~~~~~~a~~s~d~~kl~~d~~~eees~~d~~k~y~tt~yIgld~~~~~---~~kkvdi~~p~~EF~e  489 (552)
T COG5186         413 NCVAEESIEKIGSGVTLEVAYESTDHEKLANDTVPEEESMEDGMKVYCTTFYIGLDVIPVK---PGKKVDIEQPVKEFIE  489 (552)
T ss_pred             CCccHHHHHHHhcccceeehhhccchhhhccccCchhhhhccccceeeeEEEEEEEeeecC---CCceeeeeccHHHHHH
Confidence                                           0           011446899999986543   3578999999999999


Q ss_pred             hhccccccC-CCeEEEEEEeccCCCCCCcCCCCcccCCCC
Q 020698          198 GIDNYRVRR-EGRDIYFSYVCRRHLPSFVFPDGYKWHRPS  236 (322)
Q Consensus       198 ~v~~~~~~~-~~m~i~v~~vkr~~LP~~V~~~g~~~~~~~  236 (322)
                      .++.|++++ .+|.|.|+.+|+++||+-||.+|..+|...
T Consensus       490 lcr~~d~gd~~~mni~v~~~K~~dlpdeVF~~geerPs~~  529 (552)
T COG5186         490 LCREYDEGDASGMNIEVNSLKRKDLPDEVFYPGEERPSNS  529 (552)
T ss_pred             HHHHhhccccceeeeehhhccccCCchhhcCCCccCcccc
Confidence            999998886 589999999999999999999998776643

>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs

Probab=100.00  E-value=1.1e-36  Score=265.17  Aligned_cols=135  Identities=34%  Similarity=0.679  Sum_probs=106.0

Q ss_pred             CchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCC------------------CCCC
Q 020698          100 PFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYI------------------DPSK  161 (322)
Q Consensus       100 ~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~------------------d~~~  161 (322)
                      +||.+|||||+|+|+|.+++++.+|.||||||||.||.+||+.. .+..|||||+.|.                  +...
T Consensus         1 ~FF~~Yk~yl~I~~~a~~~~~~~~W~G~VESrlR~Lv~~LE~~~-~i~~ahp~pk~f~~~~~~~~~~~~~~~~~~~~~~~   79 (157)
T PF04926_consen    1 DFFSRYKHYLQIDVSAKNEEDHRKWSGWVESRLRHLVQKLERNP-GIKLAHPFPKRFERVYECSEQADENNDEEEEEDPE   79 (157)
T ss_dssp             -HHHH-SEEEEEEEEECSHHHHHHHHHHHHCCHHHHHHHHHTST-TEEEEEE-SS-EEEEEE-EBECTTCTTSHHCHCTS
T ss_pred             ChhHhCceeEEEEEEeCCHHHHHHhhhHHHHHHHHHHHHHccCC-CeeEecCCCCccccccccccccccccccccccCCC
Confidence            69999999999999999999999999999999999999999974 5677999999997                  1223


Q ss_pred             CCCceeEEEceeecccCCCCcCcccchHHHHHHHHHhhccccc--c-CCCeEEEEEEeccCCCCCCcCCCCcccCCC
Q 020698          162 PCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRV--R-REGRDIYFSYVCRRHLPSFVFPDGYKWHRP  235 (322)
Q Consensus       162 ~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~~~v~~~~~--~-~~~m~i~v~~vkr~~LP~~V~~~g~~~~~~  235 (322)
                      ..+.++|||||++......+.++++||+.++++|++.|++|..  + .++|+|+|+||||+|||++||++|.+|+++
T Consensus        80 ~~~~~~~fIGL~~~~~~~~~~~~~~dL~~~i~~F~~~v~~~~~~~~~~~~m~i~i~~vk~~~Lp~~v~~~~~~r~~k  156 (157)
T PF04926_consen   80 NEYTSSFFIGLEFDSKESNEGSKKLDLTYAIQEFKDLVRNWEKYYYDEEGMDISISHVKRSQLPDFVFEEGEKRPKK  156 (157)
T ss_dssp             EEEEEEEEEEEEE--SSSS---S-EE-HHHHHHHHHHHHCCCCTTC-TTTEEEEEEEEEHHHHGGGGS-TTS-----
T ss_pred             ceeEEEEEEEEEECCCCccccceEEehHHHHHHHHHHHHhhhccccCCCccEEEEEEechHHCChhhhcccCcCCCC
Confidence            4567899999999876643334689999999999999999877  3 568999999999999999999999988875

Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase that specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analogue at 2.5 A resolution has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The C-terminal domain unexpectedly folds into a compact domain reminiscent of the RNA-recognition motif fold. The three invariant aspartates of the catalytic triad ligate two of the three active site metals. One of these metals also contacts the adenine ring. Furthermore, conserved, catalytically important residues contact the nucleotide. These contacts, taken together with metal coordination of the adenine base, provide a structural basis for ATP selection by poly(A) polymerase. ; GO: 0003723 RNA binding, 0004652 polynucleotide adenylyltransferase activity, 0043631 RNA polyadenylation, 0005634 nucleus; PDB: 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A 1Q79_A 1Q78_A 1F5A_A.

>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs

Probab=100.00  E-value=2.3e-34  Score=269.64  Aligned_cols=99  Identities=57%  Similarity=1.057  Sum_probs=76.5

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      +||.+||.+||+|+||+||+|++++++.+++++|||+.|++|++|+|||||||||+||||||||+||+++|++||+||++
T Consensus       156 ~ll~~FF~~ys~W~W~~PV~l~~~~~~~~~~~~w~p~~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~i~~Ef~ra~~  235 (254)
T PF04928_consen  156 TLLSRFFQIYSQWDWPNPVVLDPIEDGPLGFKVWNPRLYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRIIREEFQRAHE  235 (254)
T ss_dssp             HHHHHHHHHHHCS-TTS-EESS-----SSSCGS--TTT-HHHHC-SS-EE-SSSS--BTTTT--HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHhcCCCCCCceeecccccCcccccCCCCCCCCCCcccceeEccCCCCccccccccCHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccCC
Q 020698           81 ICEEIELGKAEWSALFEHY   99 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~~   99 (322)
                      |++++..++.+|++||+|+
T Consensus       236 i~~~~~~~~~~W~~L~e~~  254 (254)
T PF04928_consen  236 ILSEILKGGASWSDLFEPH  254 (254)
T ss_dssp             HHHHHHTTSS-HHHCT---
T ss_pred             HHHHHHcCCCCHHHHcCCC
Confidence            9999999999999999985

Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human

Probab=92.68  E-value=1.5  Score=48.98  Aligned_cols=183  Identities=10%  Similarity=0.126  Sum_probs=107.0

Q ss_pred             hhHHHHHhhccCCC-CCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            2 LVSRFFRVYTQWRW-PNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         2 LV~rFF~vys~W~W-p~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      |+.-+....|..+| -+|+.++.-.+..       +.. .....+--|++--.-=.+|-.+++|.++++.|+.|-+++.+
T Consensus       224 lFr~~l~fLA~~d~~~~~l~~~~~~~~~-------~~~-~~~~~~~~~vf~D~sg~~Nl~~~ms~~s~~~L~~eA~~tl~  295 (972)
T PF03813_consen  224 LFRAVLQFLATTDLSKKPLFFKSSSDST-------ESL-EEFHSAFDPVFVDPSGGLNLLAKMSPSSYEELQHEAKLTLE  295 (972)
T ss_pred             HHHHHHHHHhccccccCceEEecCCCcc-------chh-hhhhccCCeEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            45566677799999 6699998765311       000 11123445555555557999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccC--CCchhccccEEEEE-------EEeCChhhhhhhhhhhHHHHHHHHH-HhhhcCCCceeEc
Q 020698           81 ICEEIELGKAEWSALFEH--YPFFEAYENYLQVD-------IVAADADDLLTWKGWVESRFRQLTL-KIEQDTNGLLQCH  150 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~--~~FF~~Yk~yL~I~-------v~a~~~e~~~~W~GwVESRlR~Lv~-~LE~~~~~~l~ah  150 (322)
                      ++++-  .....+.+|-.  ..+..+|.+++.|.       .......+...+...++.++-.|+. .|-...   -.++
T Consensus       296 lL~~~--~~d~F~~lFl~~~~~~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lL~raLgdR~---~~i~  370 (972)
T PF03813_consen  296 LLDDS--SDDGFDSLFLTKVDPPALRFDHVLRISPDSLLSSFSPDESLDFLSFSNYLLRKIYRLLKRALGDRA---KLIR  370 (972)
T ss_pred             Hhccc--cccchhhhhcccCCcccccCCEEEEEcchhhcccccccccccccchhHHHHHHHHHHHHHHHHHHH---HeEE
Confidence            98863  23456777744  35678999999991       1112223344454566677755544 353322   1123


Q ss_pred             CC---CCCCC--CCCCCCCceeEEEceeecccCC---CCcCcccchHHHHHHHHH
Q 020698          151 PY---PNKYI--DPSKPCPNSAFFWGLSRKEVGT---SKECQQFDFQGTVKNFRR  197 (322)
Q Consensus       151 p~---P~~f~--d~~~~~~~~~ffIGL~~~~~~~---~~~~~~~dL~~~v~~F~~  197 (322)
                      ++   +..+.  ............|||.++....   +..|...|-.....+|++
T Consensus       371 v~~~~~~~w~i~~~~~~~~~~~l~vGl~ln~~~~~r~vd~GP~a~d~~ea~~FR~  425 (972)
T PF03813_consen  371 VLRPSQPPWSISSKPPKSKPKTLTVGLILNPENAFRLVDRGPSAEDKEEAAAFRE  425 (972)
T ss_pred             EeCCCCCCcccCCCCCCCCCceEEEEEEEchhhceeeeeeCcCCcCcHHHHHHHH
Confidence            33   22221  1111111226789999876321   112223344566777876

In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
1q78_A	514	Crystal Structure Of Poly(A) Polymerase In Complex		4e-33
1q79_A	514	Crystal Structure Of Mammalian Poly(A) Polymerase L		4e-33
1f5a_A	513	Crystal Structure Of Mammalian Poly(A) Polymerase L		1e-28
2hhp_A	530	Structure Of Yeast Poly(A) Polymerase In A Closed C		4e-27
1fa0_A	537	Structure Of Yeast Poly(A) Polymerase Bound To Mang		4e-27
2o1p_A	546	Structure Of Yeast Poly(A) Polymerase In A Somewhat		4e-27
2q66_A	525	Structure Of Yeast Poly(A) Polymerase With Atp And		4e-27

>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514

Iteration: 1
 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 115/226 (50%), Gaps = 6/226 (2%)
Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
            VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
           L W G VES+ R L   +E++   T   +    +P    +P K    + +  GL  K+  
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTE 447
Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
            S+       +D Q       R   N ++      I   +V R+ L
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493

>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 115/226 (50%), Gaps = 6/226 (2%)
Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTY 327
Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
            VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct: 328 NVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
           L W G VES+ R L   +E++   T   +    +P    +P K    + +  GL  K+  
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTE 447
Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
            S+       +D Q       R   N ++      I   +V R+ L
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQL 493

>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 112/226 (49%), Gaps = 6/226 (2%)
Query: 2   LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSY 61
           LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H  PIITPAY   NS+Y
Sbjct: 268 LVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLXPIITPAYPQQNSTY 327
Query: 62  KVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVXXXXXXL 121
            VS+ T  V  E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +          
Sbjct: 328 NVSVSTRXVXVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQR 387
Query: 122 LTWKGWVESRFRQLTLKIEQD---TNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVG 178
           L W G VES+ R L   +E++   T   +    +P    +P K    + +  GL  K+  
Sbjct: 388 LEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEEFRTXWVIGLVFKKTE 447
Query: 179 TSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHL 221
            S+       +D Q       R   N +       I   +V R+ L
Sbjct: 448 NSENLSVDLTYDIQSFTDTVYRQAINSKXFEVDXKIAAXHVKRKQL 493

>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDI-VXXXXX 119
           + ++  T +V+ ++F  G +I  +I   K  W+ LFE   FF  Y+ YL++         
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373
Query: 120 XLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN 165
             L W G VES+ R L +K+E    G+   HP+  K  + S  CP 
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCPT 417

>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDI-VXXXXX 119
           + ++  T +V+ ++F  G +I  +I   K  W+ LFE   FF  Y+ YL++         
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373
Query: 120 XLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN 165
             L W G VES+ R L +K+E    G+   HP+  K  + S  CP 
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCPT 417

>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313
Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDI-VXXXXX 119
           + ++  T +V+ ++F  G +I  +I   K  W+ LFE   FF  Y+ YL++         
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373
Query: 120 XLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN 165
             L W G VES+ R L +K+E    G+   HP+  K  + S  CP 
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCPT 417

>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 3/166 (1%)
Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M ++
Sbjct: 250 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 309
Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDI-VXXXXX 119
           + ++  T +V+ ++F  G +I  +I   K  W+ LFE   FF  Y+ YL++         
Sbjct: 310 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 369
Query: 120 XLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPN 165
             L W G VES+ R L +K+E    G+   HP+  K  + S  CP 
Sbjct: 370 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPF-TKPFESSYCCPT 413
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1q79_A	514	Poly(A) polymerase alpha; mRNA processing, nucleot	2e-69
2hhp_A	530	Poly(A) polymerase; template-independent RNA polym	2e-59

>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A* Length = 514

 Score =  224 bits (571), Expect = 2e-69
 Identities = 89/248 (35%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
            LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+
Sbjct: 267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNST 326

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           Y VS+ T  VM E+F+ G  I +EI L KAEWS LFE   FF+ Y++Y+ +   A     
Sbjct: 327 YNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQ 386

Query: 121 LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYI----DPSKPCPNSAFFWGLSRKE 176
            L W G VES+ R L   +E++    L  H  P  +     +P K    + +  GL  K+
Sbjct: 387 RLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDKEEFRTMWVIGLVFKK 445

Query: 177 VGTSKECQ---QFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRR----HLPSFVFPDG 229
              S+       +D Q       R   N ++      I   +V R+     LPS V    
Sbjct: 446 TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKK 505

Query: 230 YKWHRPSR 237
            K      
Sbjct: 506 KKHSTEGV 513

>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530

 Score =  198 bits (503), Expect = 2e-59
 Identities = 74/281 (26%), Positives = 121/281 (43%), Gaps = 49/281 (17%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M ++
Sbjct: 254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 313

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADD 120
           + ++  T +V+ ++F  G +I  +I   K  W+ LFE   FF  Y+ YL++      +D+
Sbjct: 314 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDE 373

Query: 121 -LLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPSKPCPNSAFFWGLSRKEVGT 179
             L W G VES+ R L +K+E    G+   HP+   + + S  CP    +  +  K    
Sbjct: 374 QHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPF-ESSYCCPTEDDYEMIQDKYGSH 431

Query: 180 SKECQQFDFQGTVKNFR------------------------------------------- 196
             E      +      +                                           
Sbjct: 432 KTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIENKKEKVDIHIPCTEFVNL 491

Query: 197 -RGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWHRPS 236
            R  +      +  ++   +V    LP  VF +  K  RPS
Sbjct: 492 CRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEK--RPS 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
1q79_A	514	Poly(A) polymerase alpha; mRNA processing, nucleot	100.0
2hhp_A	530	Poly(A) polymerase; template-independent RNA polym	100.0
4fh3_A	349	Poly(A) RNA polymerase protein CID1; nucleotidyltr	99.26
4e8f_A	405	Poly(A) RNA polymerase protein CID1; beta polymera	99.01
2ikf_A	353	RNA uridylyl transferase; tutase, nucleotidyltrans	98.8
2b4v_A	468	RNA editing complex protein MP57; tbret2, TBMP57,	97.88
3nyb_A	323	Poly(A) RNA polymerase protein 2; polya RNA polyme	97.74
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	91.35
3hj4_A	384	Minor editosome-associated tutase; nucleotidyltran	90.13

>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*

Probab=100.00  E-value=1.9e-61  Score=489.23  Aligned_cols=238  Identities=34%  Similarity=0.542  Sum_probs=206.7

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      +||.+||.+|++|+||+||+|++++++.+++++|||+.|++||+|+||||||+||++|+|+|||+||+++|++||+||++
T Consensus       267 ~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~  346 (514)
T 1q79_A          267 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA  346 (514)
T ss_dssp             HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccCCCchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCCC
Q 020698           81 ICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDPS  160 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~~  160 (322)
                      ++++|..++.+|++||++++||.+|+|||+|+|+|.+++++.+|.||||||||.|+.+||+. ..+..|||||+.|.+..
T Consensus       347 il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~-~~i~~a~~~P~~f~~~~  425 (514)
T 1q79_A          347 ITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN-EFITLAHVNPQSFPAPK  425 (514)
T ss_dssp             HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS-TTEEEEEECSCCEECCC
T ss_pred             HHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccC-CCceeeecCccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999985 34455999999997654


Q ss_pred             C----CCCceeEEEceeeccc---CCCCcCcccchHHHHHHHHHhhccccccCCCeEEEEEEeccCCCCCCcCCCCcccC
Q 020698          161 K----PCPNSAFFWGLSRKEV---GTSKECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWH  233 (322)
Q Consensus       161 ~----~~~~~~ffIGL~~~~~---~~~~~~~~~dL~~~v~~F~~~v~~~~~~~~~m~i~v~~vkr~~LP~~V~~~g~~~~  233 (322)
                      .    ..+.++|||||+++..   ...+.+.++||+.++++|++.|++|..|++||+|+|+|||+++||++||++|+++.
T Consensus       426 ~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~  505 (514)
T 1q79_A          426 ENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKK  505 (514)
T ss_dssp             SCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC-------
T ss_pred             ccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCC
Confidence            2    3567899999998752   22235678999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCc
Q 020698          234 RPSRHF  239 (322)
Q Consensus       234 ~~~~~~  239 (322)
                      |+.+..
T Consensus       506 ~~~~~~  511 (514)
T 1q79_A          506 KKHSTE  511 (514)
T ss_dssp             ------
T ss_pred             CCCCcc
Confidence            876553

>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*

Probab=100.00  E-value=1.2e-57  Score=462.87  Aligned_cols=230  Identities=30%  Similarity=0.572  Sum_probs=209.9

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      +||.+||.+|++|+|++||+|++++++.+++++|+|+.|++|+.|+||||||+||++|+|+|||+||+++|++||+||++
T Consensus       254 ~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~  333 (530)
T 2hhp_A          254 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQ  333 (530)
T ss_dssp             HHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccCCCchhccccEEEEEEEeC-ChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCC
Q 020698           81 ICEEIELGKAEWSALFEHYPFFEAYENYLQVDIVAA-DADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDP  159 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~~~FF~~Yk~yL~I~v~a~-~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~  159 (322)
                      ++++|..++.+|.+||++++||.+|+|||+|++++. +++++..|.||||||+|.|+.+||+ ..++..|||||+.|.+.
T Consensus       334 ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~a~~~p~~f~~~  412 (530)
T 2hhp_A          334 ITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPFESS  412 (530)
T ss_dssp             HHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEEEEECSSCEEEE
T ss_pred             HHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCceeeecCCcccCcc
Confidence            999999999999999999999999999999999998 9999999999999999999999999 45677799999998421


Q ss_pred             C-------------------------------------------CCCCceeEEEceeecccCCCCcCcccchHHHHHHHH
Q 020698          160 S-------------------------------------------KPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFR  196 (322)
Q Consensus       160 ~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~  196 (322)
                      .                                           ...+.++|||||+++..   +.++++||+.++++|+
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~  489 (530)
T 2hhp_A          413 YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFV  489 (530)
T ss_dssp             EECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHH
T ss_pred             ccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHH
Confidence            0                                           12345899999999753   2356899999999999


Q ss_pred             Hhhccccc-cCCC-eE-EEEEEeccCCCCCCcCCCCcccCC
Q 020698          197 RGIDNYRV-RREG-RD-IYFSYVCRRHLPSFVFPDGYKWHR  234 (322)
Q Consensus       197 ~~v~~~~~-~~~~-m~-i~v~~vkr~~LP~~V~~~g~~~~~  234 (322)
                      +.|++|.. |++| |+ |.|+|||++|||++||++|++||+
T Consensus       490 ~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~  530 (530)
T 2hhp_A          490 NLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS  530 (530)
T ss_dssp             HHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred             HHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence            99999998 8876 89 999999999999999999998874

>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*

Probab=99.26  E-value=5.6e-12  Score=120.51  Aligned_cols=96  Identities=19%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             hhHHHHHhhc-cCCCCCceeccccccCC---------CCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHH
Q 020698            2 LVSRFFRVYT-QWRWPNPVMMCPIEMGE---------LGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVM   71 (322)
Q Consensus         2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~---------lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI   71 (322)
                      ||..||.+|+ +|+|+++|+......+-         .....|++..+..+..++|+|++|.+|.+|+++||+.+++..|
T Consensus       243 LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I  322 (349)
T 4fh3_A          243 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI  322 (349)
T ss_dssp             HHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHH
T ss_pred             HHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHH
Confidence            7889999998 69999998765332211         1224456666666677899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhccC
Q 020698           72 TEQFQCGNRICEEIELGKAEWSALFEH   98 (322)
Q Consensus        72 ~~Ef~Rg~~i~~~i~~~~~~W~~Lfe~   98 (322)
                      ++||+||++++++.. ....|+.||+.
T Consensus       323 ~~eF~~A~~~L~~~~-~~~~~~~lfe~  348 (349)
T 4fh3_A          323 RGEFMAASRLLNSRS-YPIPYDSLFEE  348 (349)
T ss_dssp             HHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred             HHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence            999999999998632 35689999986

>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A

Probab=99.01  E-value=3.4e-10  Score=111.53  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             hhHHHHHhhc-cCCCCCceeccccccCCCC--ccccCCCCC-------CCCCCCcceeeccCCCCCCcccccchhHHHHH
Q 020698            2 LVSRFFRVYT-QWRWPNPVMMCPIEMGELG--FSVWDPRKN-------PKDRSHRMPIITPAYHCMNSSYKVSLGTLQVM   71 (322)
Q Consensus         2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~lg--~~vWdPr~n-------~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI   71 (322)
                      |+..||.+|+ +|+|.+.|+-.....+.+.  .+.|+...+       ..++.+.|+|..|..|..|.+.+|+.+++..|
T Consensus       271 LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I  350 (405)
T 4e8f_A          271 LLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRI  350 (405)
T ss_dssp             HHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHH
Confidence            7889999999 8999998765321111121  146876521       12356899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhccCCCchhcc
Q 020698           72 TEQFQCGNRICEEIELGKAEWSALFEHYPFFEAY  105 (322)
Q Consensus        72 ~~Ef~Rg~~i~~~i~~~~~~W~~Lfe~~~FF~~Y  105 (322)
                      ++||+||++++.+.. .+.+|+.||+++++..+.
T Consensus       351 ~~eF~rA~~iL~~~~-~~~~w~~Lf~~~~~~~~~  383 (405)
T 4e8f_A          351 RGEFMAASRLLNSRS-YPIPYDSLFEEAPIPPRR  383 (405)
T ss_dssp             HHHHHHHHHHHTCSS-SSCCGGGGGSCCCCC---
T ss_pred             HHHHHHHHHHHhhhc-cCCCHHHHhCcCCCcccc
Confidence            999999999998743 257899999999998754

>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*

Probab=98.80  E-value=1e-09  Score=105.82  Aligned_cols=81  Identities=12%  Similarity=0.079  Sum_probs=63.6

Q ss_pred             hhHHHHHhhc-cCCCCCceeccccccCCC--CccccCCC------CCCCCCCCcceeeccCCCCCCcccccchhHHHHHH
Q 020698            2 LVSRFFRVYT-QWRWPNPVMMCPIEMGEL--GFSVWDPR------KNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMT   72 (322)
Q Consensus         2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~l--g~~vWdPr------~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~   72 (322)
                      |+..||.+|+ +|+|.++|+--.. .+.+  ....|+++      .++.++.+.|+|.+|..|..|.++||+.+++..|+
T Consensus       260 LL~~Ff~~Y~~~fd~~~~vIsi~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~  338 (353)
T 2ikf_A          260 QVLDFLHFFLHEFDSDKQVISLNR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLR  338 (353)
T ss_dssp             HHHHHHHHHHHTSCTTTEEECSSS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhccccCcCceEEEcCC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHH
Confidence            7899999999 8999999764211 1111  11358742      33345678999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 020698           73 EQFQCGNRICE   83 (322)
Q Consensus        73 ~Ef~Rg~~i~~   83 (322)
                      +||+||+++|-
T Consensus       339 ~~f~~A~~~~~  349 (353)
T 2ikf_A          339 RHLEKARDTAL  349 (353)
T ss_dssp             HHHHHHHTTTT
T ss_pred             HHHHHHHHHHH
Confidence            99999998863

>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*

Probab=97.88  E-value=5.7e-06  Score=82.97  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             hhHHHHHhhc-cCCCCCceeccccccCCC---CccccCCCCCC-CCCCCcceeeccCCC----CCCcccccchhHHHHHH
Q 020698            2 LVSRFFRVYT-QWRWPNPVMMCPIEMGEL---GFSVWDPRKNP-KDRSHRMPIITPAYH----CMNSSYKVSLGTLQVMT   72 (322)
Q Consensus         2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~l---g~~vWdPr~n~-~Dr~hlMPIITPayP----~mNSt~NVs~STl~vI~   72 (322)
                      |+..||.+|+ +|+|.+.|+--  ..+..   ....|+...|. ....+.|.|..|..|    ..|.+.||+..+++.|+
T Consensus       350 LL~~FF~yYg~~Fd~~~~vISi--r~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~  427 (468)
T 2b4v_A          350 LLHGFFIFYAHHFDYEREVVSL--NRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVK  427 (468)
T ss_dssp             HHHHHHHHHHHSSCTTTEEBCS--SSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHccccCCCCcEEEe--cCCcceecccccccccccccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHH
Confidence            7889999999 99999987621  12211   11347642221 112357999999999    99999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 020698           73 EQFQCGNRICEEIE   86 (322)
Q Consensus        73 ~Ef~Rg~~i~~~i~   86 (322)
                      +||++|+++++...
T Consensus       428 ~eF~~A~~~L~~~~  441 (468)
T 2b4v_A          428 QEFLRAAQCMERFL  441 (468)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998754

>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}

Probab=97.74  E-value=1.5e-05  Score=75.94  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=58.5

Q ss_pred             hhHHHHHhhc-cCCCCCceeccccccCC---CCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHH
Q 020698            2 LVSRFFRVYT-QWRWPNPVMMCPIEMGE---LGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQC   77 (322)
Q Consensus         2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~---lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~R   77 (322)
                      ||..||.+|+ +|+|++.++-  +.+|.   +.-..|+.- ++.++.+.|+|..|..|..|.+.++  ..++.|++||++
T Consensus       217 LL~~Ff~~Y~~~Fd~~~~~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~  291 (323)
T 3nyb_A          217 LLIEFFELYGKNFGYDDVALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAG  291 (323)
T ss_dssp             HHHHHHHHHHHTCCTTTEEEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCcEEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHH
Confidence            7899999999 9999997663  22221   112457542 2234568999999999988888774  457799999999


Q ss_pred             HHHHHHH
Q 020698           78 GNRICEE   84 (322)
Q Consensus        78 g~~i~~~   84 (322)
                      |++++.+
T Consensus       292 A~~~L~~  298 (323)
T 3nyb_A          292 AFDLLTN  298 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=91.35  E-value=0.21  Score=49.95  Aligned_cols=50  Identities=16%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             hhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHHH
Q 020698            2 LVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNRI   81 (322)
Q Consensus         2 LV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~i   81 (322)
                      |+.-||.+|++++|-+-|+=                           |      ..|.+.||+.+.+..++.|+++|+-|
T Consensus       388 LL~gFF~yYa~FDf~~~vIs---------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~i  434 (464)
T 3pq1_A          388 LLKEFFEYFGNFAXXXXXXX---------------------------X------XXXXXXXVSQSQLQKFVDLARESAWI  434 (464)
T ss_dssp             HHHHHHHHGGGCCCCCCCCC---------------------------C------C-------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccc---------------------------c------ccccccccCHHHHHHHHHHHHHHHHH
Confidence            68899999999999875541                           0      78999999999999999999999999


Q ss_pred             HHH
Q 020698           82 CEE   84 (322)
Q Consensus        82 ~~~   84 (322)
                      |+.
T Consensus       435 l~~  437 (464)
T 3pq1_A          435 LQQ  437 (464)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d2q66a1	150	a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid	9e-44
d1q79a1	150	a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid	4e-42
d1q79a3	134	d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t	5e-34
d2q66a3	178	d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t	1e-25

>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  145 bits (367), Expect = 9e-44
 Identities = 40/97 (41%), Positives = 65/97 (67%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
           ++++RFF + ++W WP PV++ PIE G L   VW+P+   +DRSHRMP+ITPAY  M ++
Sbjct: 53  VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCAT 112

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFE 97
           + ++  T +V+ ++F  G +I  +I   K  W+ LFE
Sbjct: 113 HNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE 149

>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  140 bits (355), Expect = 4e-42
 Identities = 54/97 (55%), Positives = 65/97 (67%)

Query: 1   MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSS 60
            LV +FF V+++W WPNPV++   E   L   VWDPR NP DR H MPIITPAY   NS+
Sbjct: 53  TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNST 112

Query: 61  YKVSLGTLQVMTEQFQCGNRICEEIELGKAEWSALFE 97
           Y VS+ T  VM E+F+ G  I +EI L KAEWS LFE
Sbjct: 113 YNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFE 149

>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: PAP/Archaeal CCA-adding enzyme, C-terminal domain
family: Poly(A) polymerase, PAP, C-terminal domain
domain: Poly(A) polymerase, PAP, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (299), Expect = 5e-34
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 101 FFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLL---QCHPYPNKYI 157
           FF+ Y++Y+ +   A      L W G VES+ R L   +E++    L       +P    
Sbjct: 3   FFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKE 62

Query: 158 DPSKPCPNSAFFWGLSRKEVGTS---KECQQFDFQGTVKNFRRGIDNYRVRREGRDIYFS 214
           +P K    + +  GL  K+   S        +D Q       R   N ++      I   
Sbjct: 63  NPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAM 122

Query: 215 YVCRRHLPSFV 225
           +V R+ L   +
Sbjct: 123 HVKRKQLHQLL 133

>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: PAP/Archaeal CCA-adding enzyme, C-terminal domain
family: Poly(A) polymerase, PAP, C-terminal domain
domain: Poly(A) polymerase, PAP, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.9 bits (246), Expect = 1e-25
 Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 53/182 (29%)

Query: 101 FFEAYENYLQVDIVAAD-ADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKY--- 156
           FF  Y+ YL++        +  L W G VES+ R L +K+E    G+   HP+   +   
Sbjct: 3   FFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKIAHPFTKPFESS 61

Query: 157 ----------------------------------------IDPSKPCPNSAFFWGLSRKE 176
                                                   I  +     S  + GL    
Sbjct: 62  YCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNI 121

Query: 177 VGTSKECQQFDFQGTVKNFR---RGIDNYRVRREGRDIYFSYVCRRHLPSFVFPDGYKWH 233
               +   + D       F    R  +      +  ++   +V    LP  VF +  K  
Sbjct: 122 ENKKE---KVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEK-- 176

Query: 234 RP 235
           RP
Sbjct: 177 RP 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1q79a1	150	Poly(A) polymerase, PAP, middle domain {Cow (Bos t	100.0
d2q66a1	150	Poly(A) polymerase, PAP, middle domain {Baker's ye	100.0
d2q66a3	178	Poly(A) polymerase, PAP, C-terminal domain {Baker'	100.0
d1q79a3	134	Poly(A) polymerase, PAP, C-terminal domain {Cow (B	100.0
d2b4va1	183	RNA editing terminal uridyl transferase 2, TUTase	98.28

>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-39  Score=274.49  Aligned_cols=98  Identities=55%  Similarity=0.959  Sum_probs=95.9

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      +||++||.+|++|+||+||+|++++++.+++++|||+.|++||.|+|||||||||+||||||||.||+++|++||+||++
T Consensus        53 ~ll~~FF~~ys~W~Wp~PV~l~~~~~~~~~~~~w~pr~~~~dr~~lMpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~  132 (150)
T d1q79a1          53 TLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLA  132 (150)
T ss_dssp             HHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCeeccCcccccCCCCCCCCCCCCcccccccccccCCCCcccccccccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccC
Q 020698           81 ICEEIELGKAEWSALFEH   98 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~   98 (322)
                      ||++|..++.+|++|||.
T Consensus       133 i~~~i~~~~~~W~~Lfe~  150 (150)
T d1q79a1         133 ITDEILLSKAEWSKLFEA  150 (150)
T ss_dssp             HHHHHHTTSSCHHHHTCC
T ss_pred             HHHHHHhCCCCHHHHhcC
Confidence            999999999999999984

>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: Poly(A) polymerase, PAP, middle domain
domain: Poly(A) polymerase, PAP, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-38  Score=270.96  Aligned_cols=98  Identities=41%  Similarity=0.864  Sum_probs=95.9

Q ss_pred             ChhHHHHHhhccCCCCCceeccccccCCCCccccCCCCCCCCCCCcceeeccCCCCCCcccccchhHHHHHHHHHHHHHH
Q 020698            1 MLVSRFFRVYTQWRWPNPVMMCPIEMGELGFSVWDPRKNPKDRSHRMPIITPAYHCMNSSYKVSLGTLQVMTEQFQCGNR   80 (322)
Q Consensus         1 mLV~rFF~vys~W~Wp~PV~L~~i~~~~lg~~vWdPr~n~~Dr~hlMPIITPayP~mNSt~NVs~STl~vI~~Ef~Rg~~   80 (322)
                      +||++||.+|++|+||+||+|++++++.+++++|||+.|.+|+.|+|||||||||+||||||||+||+++|++||+||++
T Consensus        53 ~ll~~FF~~ys~W~Wp~PV~l~~~~~~~~~~~~w~p~~~~~d~~~~MpIiTPayP~~Nst~nvt~st~~~i~~E~~ra~~  132 (150)
T d2q66a1          53 VILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQ  132 (150)
T ss_dssp             HHHHHHHHHHHHCCTTSCEESSCCCCCCTTSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCceeccCcccccccCCCCCCCCCCCCcccccceecCCCCcccccccccHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccchhhhccC
Q 020698           81 ICEEIELGKAEWSALFEH   98 (322)
Q Consensus        81 i~~~i~~~~~~W~~Lfe~   98 (322)
                      |+++|..++.+|++|||+
T Consensus       133 i~~~i~~~~~~W~~Lfe~  150 (150)
T d2q66a1         133 ITNDIFSNKKSWANLFEK  150 (150)
T ss_dssp             HHHHHHTTSSCHHHHTCC
T ss_pred             HHHHHHcCCCCHHHHhhC
Confidence            999999999999999984

>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: PAP/Archaeal CCA-adding enzyme, C-terminal domain
family: Poly(A) polymerase, PAP, C-terminal domain
domain: Poly(A) polymerase, PAP, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-36  Score=262.39  Aligned_cols=131  Identities=22%  Similarity=0.368  Sum_probs=109.9

Q ss_pred             CCchhccccEEEEEEEe-CChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCC------------------
Q 020698           99 YPFFEAYENYLQVDIVA-ADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDP------------------  159 (322)
Q Consensus        99 ~~FF~~Yk~yL~I~v~a-~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~------------------  159 (322)
                      ++||.+|||||+|++++ .+++++.+|.||||||||.||.+||+. .++..|||||+.|.+.                  
T Consensus         1 ~dFF~~YK~YL~V~a~s~~t~e~~~~W~G~VESKlR~LV~~LE~~-~~I~lAHP~pk~F~~~~~~~~~~e~~~v~~~~~~   79 (178)
T d2q66a3           1 NDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL-AGIKIAHPFTKPFESSYCCPTEDDYEMIQDKYGS   79 (178)
T ss_dssp             CCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEEEEECSSCEEEEEECCSHHHHHHHHHHTTC
T ss_pred             CchhhhcccEEEEEEEeCCcHHHhhhhhhHHHHHHHHHHHHhccC-CCeeEEecCCcCcccccccccHHHHHHHhhcccc
Confidence            58999999999999976 689999999999999999999999995 5777899999999421                  


Q ss_pred             -------------------------CCCCCceeEEEceeecccCCCCcCcccchHHHHHHHHHhhccccc--cCC-CeEE
Q 020698          160 -------------------------SKPCPNSAFFWGLSRKEVGTSKECQQFDFQGTVKNFRRGIDNYRV--RRE-GRDI  211 (322)
Q Consensus       160 -------------------------~~~~~~~~ffIGL~~~~~~~~~~~~~~dL~~~v~~F~~~v~~~~~--~~~-~m~i  211 (322)
                                               ....+.+.|||||+++...   .++++||+.++++|.+.|++|..  |++ +|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~fIGL~~~~~~---~~~~lDi~~~i~~F~~~~~~w~~~~~~~~~m~i  156 (178)
T d2q66a3          80 HKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIEN---KKEKVDIHIPCTEFVNLCRSFNEDYGDHKVFNL  156 (178)
T ss_dssp             TTTGGGGTTSBCCTTTC-CCHHHHHSCEEEEEEEEEEEEECC--------CCCCHHHHHHHHHHHHCSCSTTCCTTTEEE
T ss_pred             cccccccccccccccccccccccCCCCcceEEEEEEEEEeccCC---CCccccChHHHHHHHHHHHhhhhcccCCCCceE
Confidence                                     0112457899999997432   35689999999999999999964  554 6999


Q ss_pred             EEEEeccCCCCCCcCCCCcccC
Q 020698          212 YFSYVCRRHLPSFVFPDGYKWH  233 (322)
Q Consensus       212 ~v~~vkr~~LP~~V~~~g~~~~  233 (322)
                      .|+|||++|||++||++|+.||
T Consensus       157 ~I~hVk~~dLP~~Vf~~Ge~rP  178 (178)
T d2q66a3         157 ALRFVKGYDLPDEVFDENEKRP  178 (178)
T ss_dssp             EEEEEEGGGCCGGGSCTTCCCC
T ss_pred             EEEEechhhCchhhcCCCCCCc
Confidence            9999999999999999998775

>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: PAP/Archaeal CCA-adding enzyme, C-terminal domain
family: Poly(A) polymerase, PAP, C-terminal domain
domain: Poly(A) polymerase, PAP, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-34  Score=243.69  Aligned_cols=126  Identities=22%  Similarity=0.324  Sum_probs=102.7

Q ss_pred             CCchhccccEEEEEEEeCChhhhhhhhhhhHHHHHHHHHHhhhcCCCceeEcCCCCCCCCC----CCCCCceeEEEceee
Q 020698           99 YPFFEAYENYLQVDIVAADADDLLTWKGWVESRFRQLTLKIEQDTNGLLQCHPYPNKYIDP----SKPCPNSAFFWGLSR  174 (322)
Q Consensus        99 ~~FF~~Yk~yL~I~v~a~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~f~d~----~~~~~~~~ffIGL~~  174 (322)
                      .+||.+|||||+|+++|.+++++.+|.||||||||.|+.+||++. ++..|||||+.|.+.    +..+++|+|||||++
T Consensus         1 ~~FF~~yk~yl~v~~~a~~~~~~~~w~G~vESrlR~Lv~~lE~~~-~i~~a~~~p~~f~~~~~~~~~~~~~~~~fIGL~~   79 (134)
T d1q79a3           1 PNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVF   79 (134)
T ss_dssp             CCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEE
T ss_pred             CChhhhCceEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHhcccC-CceEEecCCCCcCCcccCCCCCceEEEEEEEEEe
Confidence            489999999999999999999999999999999999999999975 556799999999653    345678999999998


Q ss_pred             cccCCCCcCcccchHHHHHHHHHhhcc----ccccCCCeEEEEEEeccCCCCCCcC
Q 020698          175 KEVGTSKECQQFDFQGTVKNFRRGIDN----YRVRREGRDIYFSYVCRRHLPSFVF  226 (322)
Q Consensus       175 ~~~~~~~~~~~~dL~~~v~~F~~~v~~----~~~~~~~m~i~v~~vkr~~LP~~V~  226 (322)
                      ..... ..+.++||+..+++|.+.+++    +..|++||+|.|+||||+|||+||.
T Consensus        80 ~~~~~-~~~~~ldl~~~i~~F~~~~~~~~~~~~~~~~~m~I~v~hVkr~~LP~~v~  134 (134)
T d1q79a3          80 KKTEN-SENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLP  134 (134)
T ss_dssp             C-----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC
T ss_pred             ccCCC-CCCcccccchHHHHHHHHHHHhccccccCCCCCEEEEEEechHHcchhcC
Confidence            75432 234678999999888877754    4567889999999999999999983

>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.28  E-value=1.4e-07  Score=79.52  Aligned_cols=94  Identities=14%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             hhHHHHHhhc-cCCCCCceeccccccCCCCc---cccCCCC-CCCCCCCcceeeccCCCCCCcccccch----hHHHHHH
Q 020698            2 LVSRFFRVYT-QWRWPNPVMMCPIEMGELGF---SVWDPRK-NPKDRSHRMPIITPAYHCMNSSYKVSL----GTLQVMT   72 (322)
Q Consensus         2 LV~rFF~vys-~W~Wp~PV~L~~i~~~~lg~---~vWdPr~-n~~Dr~hlMPIITPayP~mNSt~NVs~----STl~vI~   72 (322)
                      |+..||++|+ .++|.+=|+ +. ..+..-.   ..|.... ...-+.+.|+|..|.-|..|.+|||++    -+++.|+
T Consensus        81 Ll~~FF~~Y~~~fd~~~~~I-si-~~g~~~~k~~~~~~~~~~~~~~~~~~l~IeDPfd~~~~~~~Nv~r~v~~~~~~~I~  158 (183)
T d2b4va1          81 LLHGFFIFYAHHFDYEREVV-SL-NRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVK  158 (183)
T ss_dssp             HHHHHHHHHHHSSCTTTEEB-CS-SSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhccccCHHHcee-ee-ccCCccchhhhhccccccCCCCCCcceEEeCCCccccccccchhhhcCHHHHHHHH
Confidence            7889999998 699998544 22 2222111   1233211 112245789999999999888888754    5789999


Q ss_pred             HHHHHHHHHHHHHhcCccchhhhcc
Q 020698           73 EQFQCGNRICEEIELGKAEWSALFE   97 (322)
Q Consensus        73 ~Ef~Rg~~i~~~i~~~~~~W~~Lfe   97 (322)
                      +||+||+++++.+..+...|..+++
T Consensus       159 ~~f~~a~~~l~~~~~~~~~~~~i~g  183 (183)
T d2b4va1         159 QEFLRAAQCMERFLPTNAPEKSILG  183 (183)
T ss_dssp             HHHHHHHHHHHHCCTTTCSCCGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCchhhhcC
Confidence            9999999999999888888888774