Citrus Sinensis ID: 020701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLSH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEccHHHccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEccccccccccccccccEHHHcHHHHHcHccHHHHHHHHHHEEHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccc
Coil and Loop (DISEMBL)
mrsltlpwsglkahslpssasypkaskscgsklfpfnslcknqtstskklslrnpylnfsrelcrdpgascenrndvdcknckmtRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFasglqsfpflgdlgdISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRtfhyvdeilpfrfgqtdlpiddIAAVCLLVYFGVSTLldaastdglksedeQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAassplgviGGALAGHVVATLLAVLGGSLLGTFLSEKVysnfnlsh
Flexible Loop (DISEMBL)
mrsltlpwsglkahslpssasypKASKSCGSKLFPFNSLCKnqtstskklslrnpYLNFSrelcrdpgascenrndvdcknCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLSH
Low Complexity Region (SEG)
MRSLTLPWSGLKAHslpssasypkasksCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFasallaarnsaaTVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNgagiiaaastiistFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLSH
Disordered region (IsUnstruct)
******************************************************PYLNFSRELCRD****C*NRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA*********************FSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNF****
Disordered Region (DISOPRED)
***************************************************************************************************KFVMFFGLLTL***QTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS************AELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLS*
Disordered Region (DISEMBL)
MRSLTLPWSGLKAHS*************CGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS**************LAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLSH
Disordered Region (DISPRO)
*********GLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL******KEAE***********GIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q94AX5	370	GDT1-like protein 1, chlo	yes	no	0.847	0.737	0.588	3e-78
B8AAM2	341	GDT1-like protein 1, chlo	N/A	no	0.636	0.601	0.685	1e-72
Q5NAY7	341	GDT1-like protein 1, chlo	yes	no	0.636	0.601	0.681	2e-72
Q2R2Z4	347	GDT1-like protein 2, chlo	no	no	0.624	0.579	0.4	1e-30
Q9T0H9	359	GDT1-like protein 2, chlo	no	no	0.633	0.568	0.382	2e-30
P52876	206	GDT1-like protein sll0615	N/A	no	0.521	0.815	0.344	1e-19
Q93Y38	293	GDT1-like protein 3 OS=Ar	no	no	0.496	0.546	0.346	8e-14
Q9HC07	324	Transmembrane protein 165	yes	no	0.540	0.537	0.306	2e-13
Q10320	287	GDT1-like protein C17G8.0	yes	no	0.481	0.540	0.31	2e-13
Q2R4J1	279	GDT1-like protein 3 OS=Or	no	no	0.493	0.569	0.340	6e-13

>sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2

 Score =  291 bits (746), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 204/311 (65%), Gaps = 38/311 (12%)

Query: 40  CKNQTSTSKKLSLRNPYL-----NFSRELCRDPGASCENRNDVDC-----------KNCK 83
           C +        S+RN Y         R   +  G  C  RND  C           +N  
Sbjct: 38  CVSAYPIPIGFSVRNQYFSRCLTQLRRNESQQLGFRCFQRNDAACYLEKAESEEHDRNLD 97

Query: 84  MTRES--VHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISR 140
           +  ES   H+      ++ F+   G + L G+  A AA    +  QS     GDLGDIS 
Sbjct: 98  VLVESSIAHSRREIQRVLMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISS 157

Query: 141 GFASA------------------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 182
           GFASA                  LLAARNSAATVF GTFGAL  MT+ISV+LGRTFHYVD
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVD 217

Query: 183 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNG 242
           E+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKEAELAVSE SGNG
Sbjct: 218 EVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEAELAVSELSGNG 276

Query: 243 AGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLG 302
           AGI+AAA+TIISTF LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH  ATLLAVLG
Sbjct: 277 AGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLAVLG 336

Query: 303 GSLLGTFLSEK 313
           GSLLG FLSEK
Sbjct: 337 GSLLGNFLSEK 347

Arabidopsis thaliana (taxid: 3702)

>sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/226 (68%), Positives = 175/226 (77%), Gaps = 21/226 (9%)

Query: 107 LLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASA------------------LLA 148
           +L LQGSQ A+A  +F  G+Q    +GDLGDIS GFASA                  LLA
Sbjct: 96  VLMLQGSQQALAGTEFM-GMQDV--VGDLGDISTGFASAFLLIFFSELGDRTFFIAALLA 152

Query: 149 ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYF 208
           ARNS A +F GTFGALA MT+ISV+LGR FHYVD I+PF FG TD P+DD  A CLLVY+
Sbjct: 153 ARNSGAIIFLGTFGALAVMTIISVVLGRAFHYVDGIIPFSFGGTDFPVDDFLAACLLVYY 212

Query: 209 GVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKS 268
           GV+TLLDAAS D  K  +EQ+EAELAVS+F GNGAGII+AASTI STF LVF+AEWGDKS
Sbjct: 213 GVTTLLDAASGDEEKMNEEQEEAELAVSKFLGNGAGIISAASTIASTFVLVFIAEWGDKS 272

Query: 269 FFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKV 314
           FFSTIALAAASSPLGVI G+LAGH VATL+AVLGGSLLGTFLSEK+
Sbjct: 273 FFSTIALAAASSPLGVIAGSLAGHAVATLIAVLGGSLLGTFLSEKI 318

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/226 (68%), Positives = 175/226 (77%), Gaps = 21/226 (9%)

Query: 107 LLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASA------------------LLA 148
           +L LQGSQ A+A  +F  G+Q    +GDLGDIS GFASA                  LLA
Sbjct: 96  VLMLQGSQQALAGTEFM-GMQDV--VGDLGDISTGFASAFLLIFFSELGDRTFFIAALLA 152

Query: 149 ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYF 208
           ARNS A +F GTFGALA MT+ISV+LGR FHYVD I+PF FG TD P+DD  A CLLVY+
Sbjct: 153 ARNSGAIIFLGTFGALAVMTIISVVLGRAFHYVDGIIPFSFGGTDFPVDDFLAACLLVYY 212

Query: 209 GVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKS 268
           G++TLLDAAS D  K  +EQ+EAELAVS+F GNGAGII+AASTI STF LVF+AEWGDKS
Sbjct: 213 GITTLLDAASGDEEKMNEEQEEAELAVSKFLGNGAGIISAASTIASTFVLVFIAEWGDKS 272

Query: 269 FFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKV 314
           FFSTIALAAASSPLGVI G+LAGH VATL+AVLGGSLLGTFLSEK+
Sbjct: 273 FFSTIALAAASSPLGVIAGSLAGHAVATLIAVLGGSLLGTFLSEKI 318

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 128/225 (56%), Gaps = 24/225 (10%)

Query: 101 FVMFFGLLTLQGSQTAVAAVDFASGLQ---SFPFLGDLGDISRGFASALLAARNSAATVF 157
           F++FF     +G  +AV A+   SG     +  F+ ++GD +  F +ALLA +   A V 
Sbjct: 115 FIVFF-----KGQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTF-FIAALLAMQYQRALVL 168

Query: 158 AGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA- 216
            G+  AL+ MT++SVI+GR F  V    P +F QT LPI + AA+ LL +FG  ++ DA 
Sbjct: 169 LGSMAALSLMTIVSVIIGRIFQSV----PAQF-QTTLPIGEYAAIALLAFFGFKSIKDAW 223

Query: 217 -------ASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSF 269
                   +  G     E  EAE  V E       + +    +  +F+LVF AEWGD+S 
Sbjct: 224 QLPDNANGNLQGNSESGELAEAEELVKEKVAKK--LTSPLEVLWKSFSLVFFAEWGDRSM 281

Query: 270 FSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKV 314
            +TIAL AA SP GV  GA+AGH+VAT LA++GG+ L  +LSEK+
Sbjct: 282 LATIALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKL 326

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 135/225 (60%), Gaps = 21/225 (9%)

Query: 103 MFFGLLT-LQGSQTAVAAVDFASGLQ---SFPFLGDLGDISRGFASALLAARNSAATVFA 158
           + F L+T ++G  ++V A    SG     S  F+ ++GD +  F +ALLA +     V  
Sbjct: 122 LVFSLITFVKGGPSSVLAAVAKSGFTAAFSLIFVSEIGDKTF-FIAALLAMQYEKTLVLL 180

Query: 159 GTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 218
           G+ GAL+ MT++SV++G+ F  V    P +F QT LPI + AA+ LL++FG+ ++ DA  
Sbjct: 181 GSMGALSLMTILSVVIGKIFQSV----PAQF-QTTLPIGEYAAIALLMFFGLKSIKDAWD 235

Query: 219 TDGLKSED---------EQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSF 269
              +++++         E  EAE  V E +     +      +  +F+LVF AEWGD+S 
Sbjct: 236 LPPVEAKNGEETGIELGEYSEAEELVKEKASKK--LTNPLEILWKSFSLVFFAEWGDRSM 293

Query: 270 FSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKV 314
            +T+AL AA SPLGV  GA+AGH+VAT+LA++GG+ L  ++SEK+
Sbjct: 294 LATVALGAAQSPLGVASGAIAGHLVATVLAIMGGAFLANYISEKL 338

Arabidopsis thaliana (taxid: 3702)

>sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 134 DLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTD 193
           +LGD    F + +LA R     V  G  G LAAMT++SV++G+ F +    LP R+    
Sbjct: 16  ELGD-KTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTF----LPTRY---- 66

Query: 194 LPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTII 253
               + A V L + FG   L DA       + +E ++AE A++        +      ++
Sbjct: 67  ---INYAEVALFLIFGTKLLWDARRIKATANLEEMEDAEKAIASGEKKLKIVPRGWGIVV 123

Query: 254 STFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEK 313
            +F L FVAEWGD++  +TIALAA+++  GV  GA+ GH +  ++AV+GG  +   +SEK
Sbjct: 124 ESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEK 183

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 16/176 (9%)

Query: 144 SALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVC 203
           +AL+A R+  ATV +G   AL  MT++S  LGR       I+P    +      + AA  
Sbjct: 105 AALMAMRHPKATVLSGALSALFVMTILSTGLGR-------IVPNLISRKH---TNSAATV 154

Query: 204 LLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIA------AASTIISTFT 257
           L  +FG+  L  A  +   KS  +++  E+     SG G                + +F 
Sbjct: 155 LYAFFGLRLLYIAWRSTDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFI 214

Query: 258 LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEK 313
           L F+AEWGD+S  +TIALA   + +GV  GA  GH V T LAV+GGS+L + +S++
Sbjct: 215 LTFLAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQR 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 35/209 (16%)

Query: 131 FLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFG 190
            + +LGD +  F +A++A R +  TV AG   AL  MT +SV+ G    Y   ++P  + 
Sbjct: 105 IVSELGDKTF-FIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG----YATTVIPRVY- 158

Query: 191 QTDLPIDDIAAVCLLVYFGVSTLLDA--ASTDGLKSEDEQKEAELAV--SEFSG----NG 242
                     +  L   FG+  L +    S D  + E E+ +AEL     EF      NG
Sbjct: 159 ------TYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 212

Query: 243 AGIIAAASTI---------------ISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGG 287
            G +   ++I               +   TL F+AEWGD+S  +TI LAA   P GV  G
Sbjct: 213 PGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVG 272

Query: 288 ALAGHVVATLLAVLGGSLLGTFLSEKVYS 316
              GH + T LAV+GG ++   +S +  +
Sbjct: 273 GTVGHCLCTGLAVIGGRMIAQKISVRTVT 301

Homo sapiens (taxid: 9606)

>sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 45/200 (22%)

Query: 144 SALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVC 203
           +ALLA  NS  TVFAG++ AL  MT++ V+LG   H    + P +       + DI    
Sbjct: 70  AALLAFENSRLTVFAGSYSALFIMTLLGVLLG---HAAPLLFPRK-------LTDILGGV 119

Query: 204 LLVYFGVSTLLDAA----STDGLKSEDEQKEAELA------------------------- 234
           L V FG+  L++A     S + +  E +    E+A                         
Sbjct: 120 LFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRS 179

Query: 235 ----VSEFSGNGAGIIAA--ASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGA 288
               +S+    G  ++A   +   I  F L FV+EWGD+S  +TIA+AA+ +  GV  GA
Sbjct: 180 GHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGA 239

Query: 289 LAGHVVATLLAVLGGSLLGT 308
             GH   T LAV+ G  + T
Sbjct: 240 NVGHACCTALAVISGKYIST 259

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 17/176 (9%)

Query: 144 SALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVC 203
           +AL+A R+  + V +G   AL  MTV+S  LGR       I+P    +      + AA  
Sbjct: 92  AALMAMRHPKSIVLSGALSALYVMTVLSTGLGR-------IVPNLISRKH---TNSAATV 141

Query: 204 LLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIA------AASTIISTFT 257
           L ++FG+  L  A  +D  K   +++  E+     SG G   +            +  F 
Sbjct: 142 LYLFFGLRLLYIAWKSDP-KGSQKKEMEEVEEKLESGQGKSTLRRFFGRFCTPIFLEAFI 200

Query: 258 LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEK 313
           L F+AEWGD+S  +TIALA   + +GV  GA  GH V T LAV+GGS+L + +S++
Sbjct: 201 LTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQR 256

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
255537647	375	Transmembrane protein TPARL, putative [R	0.885	0.76	0.581	1e-94
297742269	393	unnamed protein product [Vitis vinifera]	0.959	0.786	0.585	7e-94
449452426	342	PREDICTED: GDT1-like protein 1, chloropl	0.869	0.818	0.601	3e-93
225426088	260	PREDICTED: GDT1-like protein 1, chloropl	0.677	0.838	0.775	3e-86
359806660	347	uncharacterized protein LOC100809618 [Gl	0.819	0.760	0.613	1e-84
357481519	403	Transmembrane protein [Medicago truncatu	0.866	0.692	0.582	7e-81
356540420	321	PREDICTED: LOW QUALITY PROTEIN: GDT1-lik	0.798	0.800	0.589	8e-79
297836959	368	predicted protein [Arabidopsis lyrata su	0.807	0.706	0.629	1e-77
18407980	370	uncharacterized protein [Arabidopsis tha	0.847	0.737	0.588	2e-76
15010676	370	At1g64150/F22C12_10 [Arabidopsis thalian	0.841	0.732	0.594	8e-76

>gi|255537647|ref|XP_002509890.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223549789|gb|EEF51277.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 210/361 (58%), Positives = 235/361 (65%), Gaps = 76/361 (21%)

Query: 1   MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFS 60
           MRS+TL  S L+    P   S           L P NS  K ++S   KLS RNP L FS
Sbjct: 1   MRSITLSESALRLPPCPKPVS-----------LLPLNSFSKKRSS---KLSFRNPCLTFS 46

Query: 61  R---ELCRD----------PGASCENRNDV-----DCKNCKMTRES-------------- 88
           R   + C            P  S +N N +     DC+N + +RES              
Sbjct: 47  RYSRQWCEYSIQEAFRHFLPMVS-KNFNGLEVRGLDCQNFQASRESMPVLDDICFLDKLS 105

Query: 89  --VHNLANDS---------GLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGD 137
             V ++  D          GL+KF++  G LT QGSQ A A  D A G QS P+LGDLGD
Sbjct: 106 TKVKSIKEDEVAASTTSYGGLLKFMLLVGYLTFQGSQQAFAGTDIAVGSQSIPYLGDLGD 165

Query: 138 ISRGFASA------------------LLAARNSAATVFAGTFGALAAMTVISVILGRTFH 179
           IS GFASA                  LLAARNSAATVF GTFGALA MT+ISV+LGRTFH
Sbjct: 166 ISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALAVMTIISVVLGRTFH 225

Query: 180 YVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFS 239
           YVDEILPFR G+TDLP+DDIAAVCLLVYFGVSTL+DA+S DGLK+EDEQKEAELAVSEFS
Sbjct: 226 YVDEILPFRLGETDLPVDDIAAVCLLVYFGVSTLIDASSGDGLKAEDEQKEAELAVSEFS 285

Query: 240 GNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLA 299
           GNGAGI+AAASTIISTF LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGH VATL+A
Sbjct: 286 GNGAGILAAASTIISTFVLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHGVATLIA 345

Query: 300 V 300
           V
Sbjct: 346 V 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742269|emb|CBI34418.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 220/376 (58%), Positives = 251/376 (66%), Gaps = 67/376 (17%)

Query: 1   MRSLTLPWSGLKAHSLPSSASYPKASKSCGSKLFPFNSLCKNQTSTSKKLSLRNPYLNFS 60
           MR++TL  S L+ HSL S    PK  K   S LF  NS  K   S   KLS + P L FS
Sbjct: 1   MRTITLSESVLRTHSLHSPC--PKPPKFFSSYLFSLNSRVKEHNS---KLSHQYPRLVFS 55

Query: 61  RELCRDPGASC------------ENRNDVD---CKNCKMTRESVHNL------------- 92
           R   R    +C            EN + ++   C N K +++ +HN+             
Sbjct: 56  RFSRRWGENTCGKLFGQFLEKDWENSDGIELRYCWNGKASKQLLHNVDDFGFSDKSPAKI 115

Query: 93  ----------------ANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLG 136
                            +  GL+KF++ FG LTLQ SQ AVA  DFASGLQ   +LGDLG
Sbjct: 116 NYKRENHTTRSIPVLDTSMGGLLKFMLVFGFLTLQDSQQAVAGSDFASGLQLNSYLGDLG 175

Query: 137 DISRGFASA------------------LLAARNSAATVFAGTFGALAAMTVISVILGRTF 178
           DIS GF SA                  LLAARNS A VF GTFGALA MT+ISV+LGRTF
Sbjct: 176 DISTGFVSAFLLIFFSELGDKTFFIAALLAARNSGAVVFIGTFGALATMTIISVVLGRTF 235

Query: 179 HYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEF 238
           HYVDEILPFRFG+TDLPIDDIAAVCLLVYFGVSTLL+A S++GLK+E+EQKEAE+AVSEF
Sbjct: 236 HYVDEILPFRFGETDLPIDDIAAVCLLVYFGVSTLLEANSSNGLKAEEEQKEAEIAVSEF 295

Query: 239 SGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLL 298
           SGNGAGI+++AST+ISTF LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGH VATLL
Sbjct: 296 SGNGAGILSSASTVISTFLLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHGVATLL 355

Query: 299 AVLGGSLLGTFLSEKV 314
           AVLGGSLLGTFLSEKV
Sbjct: 356 AVLGGSLLGTFLSEKV 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452426|ref|XP_004143960.1| PREDICTED: GDT1-like protein 1, chloroplastic-like, partial [Cucumis sativus]

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/321 (60%), Positives = 228/321 (71%), Gaps = 41/321 (12%)

Query: 34  FPFNSLCKNQTSTS---KKLSLRNPYLNFSRELCRDPGASCE--NRNDVDCKNCKMTRES 88
           + F+S C+  T+     +K  + + Y +  +E C    +S E   R+     NC+   + 
Sbjct: 1   YRFSSCCRTATTKPWYWRKTEVVSKYYD-HQEPCHHDYSSREVSTRSITILDNCRAPEKP 59

Query: 89  VHNLANDSGL-----------------IKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPF 131
           +   ++  G+                 +KF++  G   LQ SQ A+A  D A+GLQS P 
Sbjct: 60  LAKYSSAEGIHENTDNQKSSSIFSSSFLKFMLLSGFFILQDSQHALAGSDVATGLQSVPL 119

Query: 132 LGDLGDISRGFASA------------------LLAARNSAATVFAGTFGALAAMTVISVI 173
           LGDLGDIS GFASA                  LLAARNSAATVF GTFGAL AMT+ISV+
Sbjct: 120 LGDLGDISTGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFTGTFGALGAMTIISVV 179

Query: 174 LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAEL 233
           LGRTFHYVDEILPFR G +DLP+DDIAAVCLLVYFGV+TLLDA+S+DGLK+EDEQKEAEL
Sbjct: 180 LGRTFHYVDEILPFRLGDSDLPVDDIAAVCLLVYFGVTTLLDASSSDGLKAEDEQKEAEL 239

Query: 234 AVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHV 293
           AVS+FSGNGAGI+AAAST++STF LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGH 
Sbjct: 240 AVSKFSGNGAGILAAASTVVSTFALVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHG 299

Query: 294 VATLLAVLGGSLLGTFLSEKV 314
           VATLLAVLGGSLLGTFLSEK+
Sbjct: 300 VATLLAVLGGSLLGTFLSEKI 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426088|ref|XP_002272191.1| PREDICTED: GDT1-like protein 1, chloroplastic [Vitis vinifera]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/236 (77%), Positives = 200/236 (84%), Gaps = 18/236 (7%)

Query: 97  GLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASA----------- 145
           GL+KF++ FG LTLQ SQ AVA  DFASGLQ   +LGDLGDIS GF SA           
Sbjct: 3   GLLKFMLVFGFLTLQDSQQAVAGSDFASGLQLNSYLGDLGDISTGFVSAFLLIFFSELGD 62

Query: 146 -------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 198
                  LLAARNS A VF GTFGALA MT+ISV+LGRTFHYVDEILPFRFG+TDLPIDD
Sbjct: 63  KTFFIAALLAARNSGAVVFIGTFGALATMTIISVVLGRTFHYVDEILPFRFGETDLPIDD 122

Query: 199 IAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTL 258
           IAAVCLLVYFGVSTLL+A S++GLK+E+EQKEAE+AVSEFSGNGAGI+++AST+ISTF L
Sbjct: 123 IAAVCLLVYFGVSTLLEANSSNGLKAEEEQKEAEIAVSEFSGNGAGILSSASTVISTFLL 182

Query: 259 VFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKV 314
           VFVAEWGDKSFFSTIALAAASSPLGVIGGALAGH VATLLAVLGGSLLGTFLSEKV
Sbjct: 183 VFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHGVATLLAVLGGSLLGTFLSEKV 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806660|ref|NP_001241025.1| uncharacterized protein LOC100809618 [Glycine max] gi|255636411|gb|ACU18544.1| unknown [Glycine max]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/303 (61%), Positives = 217/303 (71%), Gaps = 39/303 (12%)

Query: 43  QTSTSKKLSLRNPYLNFSRELCRDPGASCENRND-----VDCKNCK--MTR---ESVHNL 92
           + S +K+L  ++     S+   + P    +N N+         NCK  + R    S H  
Sbjct: 31  RISNTKRL--QSSTFALSQNETKFPTQPYKNSNNSSQSLAHISNCKFPLARPLVSSSHPA 88

Query: 93  ANDSG--LIKFVMFFGLLTLQGSQTAVAAV-DFASGLQSFPFLGDLGDISRGFASA---- 145
           + +S   L+  ++ F  LTLQ S  A+AA  DF++        GD+GD+S GFASA    
Sbjct: 89  STNSSTKLLNSMLLFAFLTLQPSYPALAASSDFST------IFGDIGDLSTGFASAFLLI 142

Query: 146 --------------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQ 191
                         LLAARNSA  VF GTFGALAAMT+ISV+LGRTFHYVDEILPFRFG+
Sbjct: 143 FFSELGDKTFFIAALLAARNSAGVVFIGTFGALAAMTLISVVLGRTFHYVDEILPFRFGE 202

Query: 192 TDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAAST 251
           TDLPIDDIAAVCLLVYFGVSTLLDA+S+DG KS++EQKEAELAVSEFSGNGAGI++AAST
Sbjct: 203 TDLPIDDIAAVCLLVYFGVSTLLDASSSDGQKSDEEQKEAELAVSEFSGNGAGILSAAST 262

Query: 252 IISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 311
           + STF LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH VATLLAVLGGSLLGT+LS
Sbjct: 263 VASTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGVATLLAVLGGSLLGTYLS 322

Query: 312 EKV 314
           EKV
Sbjct: 323 EKV 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481519|ref|XP_003611045.1| Transmembrane protein [Medicago truncatula] gi|355512380|gb|AES94003.1| Transmembrane protein [Medicago truncatula]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 187/321 (58%), Positives = 223/321 (69%), Gaps = 42/321 (13%)

Query: 15  SLPSSASYPKASKSCGSKL---FPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASC 71
           SL SS+ +P  +  C  KL   F F ++ ++ T              F R    +  +  
Sbjct: 82  SLISSSIFPPPTPRCNLKLPPRFQFTNIFRSTT-------------GFVR--ASEDDSVA 126

Query: 72  ENRNDVDCKNCKMTRESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPF 131
           EN +      C++  ++V +      ++KF++F     LQ +  AVAA DFA+GL S P 
Sbjct: 127 ENSD----SQCQLATQNVSSDDASMTVLKFMLFSAFFALQDAFPAVAASDFATGLNSIPI 182

Query: 132 LGDLGDISRGFASA------------------LLAARNSAATVFAGTFGALAAMTVISVI 173
            GD+GD+S GFASA                  LLAARNSA+ VF GTFGALAAMTVISV 
Sbjct: 183 FGDVGDLSTGFASAFLLIFFSELGDKTFFIAALLAARNSASVVFVGTFGALAAMTVISVA 242

Query: 174 LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAEL 233
           LGRTFHYVDE+LPFRFG+TDLPIDDIAAVCLLVYFGVSTLLDA+S+D  KS+DEQKEAEL
Sbjct: 243 LGRTFHYVDELLPFRFGETDLPIDDIAAVCLLVYFGVSTLLDASSSDSQKSDDEQKEAEL 302

Query: 234 AVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHV 293
           AVS+FSG+GAGI+AAASTI+STF LVFVAEWGDKSFFSTI    +SSPLGVI G+LAGH 
Sbjct: 303 AVSDFSGDGAGILAAASTIVSTFLLVFVAEWGDKSFFSTI--GESSSPLGVIAGSLAGHG 360

Query: 294 VATLLAVLGGSLLGTFLSEKV 314
           VATL+AVLGGSLLGTFLSEKV
Sbjct: 361 VATLIAVLGGSLLGTFLSEKV 381

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540420|ref|XP_003538687.1| PREDICTED: LOW QUALITY PROTEIN: GDT1-like protein 1, chloroplastic-like, partial [Glycine max]

 Score =  300 bits (767), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 178/302 (58%), Positives = 206/302 (68%), Gaps = 45/302 (14%)

Query: 51  SLRNPYLNFSRELCRDPGASCENRND-----VDCKNCKMTRE-------------SVHNL 92
           +LR      SR   + P  +  N N+         N K +               ++ NL
Sbjct: 5   TLRTSTFATSRNETKFPTQAYRNSNNSPGSLAHISNWKFSLPPPPPPPLVSSSAPAITNL 64

Query: 93  ANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASA------- 145
           +    L+ F++ FG LTLQ S  A+A+    S +      GD+GD+S GFASA       
Sbjct: 65  STK--LLNFMLLFGFLTLQDSYPALASSSDISTI-----FGDIGDLSTGFASAFLLIFFS 117

Query: 146 -----------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDL 194
                      LLAARNSA  VF GTFGALAAMT+ISV+LGRTFHYVDEILPFRF +TDL
Sbjct: 118 ELGDKTFFIAALLAARNSAGVVFIGTFGALAAMTLISVVLGRTFHYVDEILPFRFXETDL 177

Query: 195 PIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEA--ELAVSEFSGNGAGIIAAASTI 252
           PIDDIAAV LLVYFGVSTLLDA+S+D  KS++EQKE   ELAVS+FSGNGAGI++AAST+
Sbjct: 178 PIDDIAAVGLLVYFGVSTLLDASSSDSQKSDEEQKEIIFELAVSDFSGNGAGILSAASTV 237

Query: 253 ISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSE 312
            STF LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH VATLLAVLGGSLLGT+LSE
Sbjct: 238 ASTFLLVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGVATLLAVLGGSLLGTYLSE 297

Query: 313 KV 314
           KV
Sbjct: 298 KV 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836959|ref|XP_002886361.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332202|gb|EFH62620.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 190/302 (62%), Positives = 211/302 (69%), Gaps = 42/302 (13%)

Query: 51  SLRNPYLNFSR---ELCRDPGAS----CENRNDVDCKNCKM-TRESVHNL--ANDSG--- 97
           S RN Y  FSR   +L R+        C  RND  C   K  + E++ NL    DS    
Sbjct: 47  SFRNQY--FSRCLTQLRRNESQQLEFRCFRRNDSACYLEKAESEENIRNLDLLVDSSVAH 104

Query: 98  -------LIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISRGFASA---- 145
                  L+KF+   G + L G+  A AA   A+G QS    LGDLGDIS GFASA    
Sbjct: 105 SRRETLRLLKFLAVSGSVALLGNDPAFAASSIANGTQSLVSSLGDLGDISSGFASAFLLI 164

Query: 146 --------------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQ 191
                         LLAARNSAATVF GTFGAL  MT+ISV+LGRTFHY DE+LPFRFG+
Sbjct: 165 FFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYADEVLPFRFGE 224

Query: 192 TDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAAST 251
           TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKEAELAVSE SG+GAGI+AAA+T
Sbjct: 225 TDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEAELAVSELSGSGAGIVAAANT 283

Query: 252 IISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 311
           IISTF LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH  ATLLAVLGGSLLG FLS
Sbjct: 284 IISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLAVLGGSLLGNFLS 343

Query: 312 EK 313
           EK
Sbjct: 344 EK 345

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407980|ref|NP_564825.1| uncharacterized protein [Arabidopsis thaliana] gi|308191633|sp|Q94AX5.2|GDT11_ARATH RecName: Full=GDT1-like protein 1, chloroplastic; Flags: Precursor gi|332196081|gb|AEE34202.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 183/311 (58%), Positives = 204/311 (65%), Gaps = 38/311 (12%)

Query: 40  CKNQTSTSKKLSLRNPYL-----NFSRELCRDPGASCENRNDVDC-----------KNCK 83
           C +        S+RN Y         R   +  G  C  RND  C           +N  
Sbjct: 38  CVSAYPIPIGFSVRNQYFSRCLTQLRRNESQQLGFRCFQRNDAACYLEKAESEEHDRNLD 97

Query: 84  MTRES--VHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISR 140
           +  ES   H+      ++ F+   G + L G+  A AA    +  QS     GDLGDIS 
Sbjct: 98  VLVESSIAHSRREIQRVLMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISS 157

Query: 141 GFASA------------------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 182
           GFASA                  LLAARNSAATVF GTFGAL  MT+ISV+LGRTFHYVD
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVD 217

Query: 183 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNG 242
           E+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKEAELAVSE SGNG
Sbjct: 218 EVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEAELAVSELSGNG 276

Query: 243 AGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLG 302
           AGI+AAA+TIISTF LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH  ATLLAVLG
Sbjct: 277 AGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLAVLG 336

Query: 303 GSLLGTFLSEK 313
           GSLLG FLSEK
Sbjct: 337 GSLLGNFLSEK 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15010676|gb|AAK73997.1| At1g64150/F22C12_10 [Arabidopsis thaliana] gi|23505909|gb|AAN28814.1| At1g64150/F22C12_10 [Arabidopsis thaliana]

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 185/311 (59%), Positives = 208/311 (66%), Gaps = 40/311 (12%)

Query: 35  PFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPGASCENRNDVDC-----------KNCK 83
           P     +NQ+ +     LR    N S++L    G  C  RND  C           +N  
Sbjct: 45  PIGFSVRNQSFSRCLTQLRR---NESQQL----GFRCFQRNDAACYLEKAESEEHDRNLD 97

Query: 84  MTRES--VHNLANDSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSF-PFLGDLGDISR 140
           +  ES   H+      ++ F+   G + L G+  A AA    +  QS     GDLGDIS 
Sbjct: 98  VLVESSIAHSRREIQRVLMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISS 157

Query: 141 GFASA------------------LLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVD 182
           GFASA                  LLAARNSAATVF GTFGAL  MT+ISV+LGRTFHYVD
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVD 217

Query: 183 EILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNG 242
           E+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKEAELAVSE SGNG
Sbjct: 218 EVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEAELAVSELSGNG 276

Query: 243 AGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLG 302
           AGI+AAA+TIISTF LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH  ATLLAVLG
Sbjct: 277 AGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLAVLG 336

Query: 303 GSLLGTFLSEK 313
           GSLLG FLSEK
Sbjct: 337 GSLLGNFLSEK 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2024628	370	AT1G64150 [Arabidopsis thalian	0.593	0.516	0.683	1.6e-67
TAIR|locus:2140872	359	AT4G13590 [Arabidopsis thalian	0.649	0.582	0.360	4.4e-29
TAIR|locus:2183632	293	AT5G36290 "AT5G36290" [Arabido	0.462	0.508	0.345	9.7e-13
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.559	0.606	0.291	1.2e-11
POMBASE|SPAC17G8.08c	287	SPAC17G8.08c "human TMEM165 ho	0.164	0.184	0.490	4.5e-11
FB|FBgn0260659	503	CG42542 [Drosophila melanogast	0.173	0.111	0.5	1.8e-10
TAIR|locus:2026879	228	AT1G68650 "AT1G68650" [Arabido	0.583	0.824	0.285	3.5e-10
TAIR|locus:2031195	230	AT1G25520 [Arabidopsis thalian	0.583	0.817	0.273	1.1e-08
UNIPROTKB|I3LA04	151	TMEM165 "Uncharacterized prote	0.167	0.357	0.517	1.1e-08
CGD|CAL0002043	350	orf19.4496 [Candida albicans (	0.173	0.16	0.446	1.3e-08

TAIR|locus:2024628 AT1G64150 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 134/196 (68%), Positives = 143/196 (72%)

Query:   121 DFASGLQS---FPFLGDLGDISRGFXXXXXXXXXXXXTVFAGTFGALAAMTVISVILGRT 177
             D +SG  S     F  +LGD    F            TVF GTFGAL  MT+ISV+LGRT
Sbjct:   154 DISSGFASAFLLIFFSELGD-KTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRT 212

Query:   178 FHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSE 237
             FHYVDE+LPFRFG TDLPIDDIAAVCLLVYFGVSTLLDA S +G K+++EQKEAELAVSE
Sbjct:   213 FHYVDEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEG-KADEEQKEAELAVSE 271

Query:   238 FSGNXXXXXXXXXXXXXXFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATL 297
              SGN              F LVFVAEWGDKSFFSTIALAAASSPLGVI GALAGH  ATL
Sbjct:   272 LSGNGAGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATL 331

Query:   298 LAVLGGSLLGTFLSEK 313
             LAVLGGSLLG FLSEK
Sbjct:   332 LAVLGGSLLGNFLSEK 347

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2140872 AT4G13590 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 83/230 (36%), Positives = 127/230 (55%)

Query:    98 LIKFVMFFGLLT-LQGSQTAVAAVDFASGLQ---SFPFLGDLGDISRGFXXXXXXXXXXX 153
             L+   + F L+T ++G  ++V A    SG     S  F+ ++GD    F           
Sbjct:   117 LLSCGLVFSLITFVKGGPSSVLAAVAKSGFTAAFSLIFVSEIGD-KTFFIAALLAMQYEK 175

Query:   154 XTVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 213
               V  G+ GAL+ MT++SV++G+ F  V    P +F QT LPI + AA+ LL++FG+ ++
Sbjct:   176 TLVLLGSMGALSLMTILSVVIGKIFQSV----PAQF-QTTLPIGEYAAIALLMFFGLKSI 230

Query:   214 LDAASTDGLKSED---------EQKEAELAVSEFSGNXXXXXXXXXXXXXXFTLVFVAEW 264
              DA     +++++         E  EAE  V E +                F+LVF AEW
Sbjct:   231 KDAWDLPPVEAKNGEETGIELGEYSEAEELVKEKASKKLTNPLEILWKS--FSLVFFAEW 288

Query:   265 GDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKV 314
             GD+S  +T+AL AA SPLGV  GA+AGH+VAT+LA++GG+ L  ++SEK+
Sbjct:   289 GDRSMLATVALGAAQSPLGVASGAIAGHLVATVLAIMGGAFLANYISEKL 338

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2183632 AT5G36290 "AT5G36290" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 9.7e-13, P = 9.7e-13
 Identities = 57/165 (34%), Positives = 80/165 (48%)

Query:   155 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 214
             TV +G   AL  MT++S  LGR       I+P    +      + AA  L  +FG+  L 
Sbjct:   116 TVLSGALSALFVMTILSTGLGR-------IVPNLISRKHT---NSAATVLYAFFGLRLLY 165

Query:   215 DA-ASTDGLKSED-EQKEAELAVSEFSGNXXXXXXXXXXXX----XXFTLVFVAEWGDKS 268
              A  STD   ++  E +E E  +    G                   F L F+AEWGD+S
Sbjct:   166 IAWRSTDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRS 225

Query:   269 FFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEK 313
               +TIALA   + +GV  GA  GH V T LAV+GGS+L + +S++
Sbjct:   226 QIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQR 270

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 176 (67.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 63/216 (29%), Positives = 94/216 (43%)

Query:   120 VDFASG-LQSFPFL--GDLGDISRGFXXXXXXXXXXXXTVFAGTFGALAAMTVISVILGR 176
             + F  G L SF  +   +LGD    F            TVF+G  GALA MTV+S  LG 
Sbjct:    63 ISFYHGFLASFSVIVVSELGD-KTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLG- 120

Query:   177 TFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA---ASTDGLKSEDE------ 227
                ++ +++P         +    +  L   FG+  L +    +  +G +  +E      
Sbjct:   121 ---WITQVIP-------RAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVA 170

Query:   228 QKEAELAVSEFS---GNXXXXXXXXXXXXXXFT---------LVFVAEWGDKSFFSTIAL 275
             ++E EL   +F    G               FT         L FVAEWGD+S  +TI L
Sbjct:   171 KREGELDAGKFEMLEGGGGVASQSETRKIFLFTSRIFIEAFSLTFVAEWGDRSQLTTIIL 230

Query:   276 AAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 311
              A  +  GVIGG + GH + T +AV+GG ++   +S
Sbjct:   231 GARENIAGVIGGGILGHALCTGIAVIGGKIVAQRIS 266

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC17G8.08c SPAC17G8.08c "human TMEM165 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 132 (51.5 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
 Identities = 26/53 (49%), Positives = 34/53 (64%)

Query:   256 FTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGT 308
             F L FV+EWGD+S  +TIA+AA+ +  GV  GA  GH   T LAV+ G  + T
Sbjct:   207 FALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYIST 259

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0260659 CG42542 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query:   256 FTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 311
             FT+ F+AEWGD+S  +TI LAA+    GVI G + GH + T LAV+GG L+ + +S
Sbjct:   421 FTMTFLAEWGDRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKIS 476

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2026879 AT1G68650 "AT1G68650" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 58/203 (28%), Positives = 84/203 (41%)

Query:   122 FASGLQSFPFLGDLGDISRGFXXXXXXXXXXXXTVFAGTFGALAAMTVISVILG------ 175
             F   L +  FL ++GD    F             V AG   AL  MT++S  LG      
Sbjct:     8 FTKSL-AMTFLSEIGD-KTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAPNL 65

Query:   176 --RTF-HYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE 232
               R + H++   L F FG   L               V   LD+   D  K+ D+ K ++
Sbjct:    66 ISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDS---DLKKTNDQSKNSK 122

Query:   233 LAVSEFSGNXXXXXXXXX-XXXXXFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAG 291
             +   +                   F++ F  EWGDKS  +TI LAA  +PLGV+ G +  
Sbjct:   123 IEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVA 182

Query:   292 HVVATLLAVLGGSLLGTFLSEKV 314
               + T  AVLGG  L + +SE++
Sbjct:   183 QTLCTTAAVLGGKSLASQISERI 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2031195 AT1G25520 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 56/205 (27%), Positives = 83/205 (40%)

Query:   122 FASGLQSFPFLGDLGDISRGFXXXXXXXXXXXXTVFAGTFGALAAMTVISVILG------ 175
             F   L +  F+ ++GD    F             V AG   AL  MT++S  LG      
Sbjct:     8 FTKSL-AMTFVSEIGD-KTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAPNL 65

Query:   176 --RTF-HYVDEILPFRFGQTDLPIDDI--AAVCLLVYFGVSTLLDA-ASTDGLKSEDEQK 229
               R + H++  +L F FG   L  D              V   LDA    +G   +D  K
Sbjct:    66 ISRKWTHHITTLLFFGFGLWSL-WDGFKEGGGGSEELAEVEAELDADLKANGKSPKDSSK 124

Query:   230 EAELAVSEFSGNXXXXXXXXXXXXXXFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGAL 289
               +   ++                  F++ F  EWGDKS  +TI LAA  +P GV+ G +
Sbjct:   125 RED--ENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGV 182

Query:   290 AGHVVATLLAVLGGSLLGTFLSEKV 314
                 + T  AV+GG  L + +SE++
Sbjct:   183 VAQFLCTTAAVIGGKSLASQISERI 207

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|I3LA04 TMEM165 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query:   257 TLVFVAEWGDKSFFSTIALAAASSPLGV-IGGALAGHVVATLLAVLGGSLLGTFLS 311
             TL F+AEWGD+S  +TI LAA   P GV +GGA+ GH + T LAV+GG ++   +S
Sbjct:    69 TLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGAV-GHCLCTGLAVIGGRMVAQKIS 123

GO:0016020 "membrane" evidence=IEA

CGD|CAL0002043 orf19.4496 [Candida albicans (taxid:5476)]

 Score = 119 (46.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 25/56 (44%), Positives = 34/56 (60%)

Query:   256 FTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 311
             F + F+ EWGD+S  +TIA+AA S    VI GA+ GH + T  A +GG  L   +S
Sbjct:   266 FVMTFLGEWGDRSQIATIAMAAGSEYWFVIFGAIIGHGLCTAAACIGGKYLAKKIS 321

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NAY7	GDT11_ORYSJ	No assigned EC number	0.6814	0.6366	0.6011	yes	no
Q94AX5	GDT11_ARATH	No assigned EC number	0.5884	0.8478	0.7378	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002508001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (260 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	3e-21
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	4e-16
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	7e-05
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	8e-05

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 32/184 (17%)

Query: 131 FLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFG 190
            L ++GD ++   + LLA R     VFAG   AL AM  ++V++G   H    +LP R  
Sbjct: 12  ALAEIGDKTQ-LIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVG---HAAASLLPER-- 65

Query: 191 QTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAAS 250
                    A+  L + F V  L++    D    E+ Q  +   V               
Sbjct: 66  -----PLAWASGVLFLAFAVWMLIE----DKEDDEEAQAASPRGV--------------- 101

Query: 251 TIISTFTLVFVAEWGDKSFFSTIALAAAS-SPLGVIGGALAGHVVATLLAVLGGSLLGTF 309
             ++TF   F+AE GDK+  +TIALAA   SP  V  G   G ++A++LAVL G L+   
Sbjct: 102 -FVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGK 160

Query: 310 LSEK 313
           L E+
Sbjct: 161 LPER 164

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 71.7 bits (177), Expect = 4e-16
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 252 IISTFTLVFVAEWGDKSFFSTIALAA--ASSPLGVIGGALAGHVVATLLAVLGGSLLGTF 309
            +++F L+F+AE GDK+  +TIALAA  + SP  V  GA     +ATLLAVL G  L T 
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 310 LSEKV 314
           L  +V
Sbjct: 61  LPPRV 65

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 249 ASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGT 308
            + ++S   +V +AE GDK+    + LA       V  G          LAVL G    +
Sbjct: 2   EALLVSL-LMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAAS 60

Query: 309 FLSEK 313
            L E+
Sbjct: 61  LLPER 65

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 131 FLGDLGDISRGFASALLAARNSAAT--VFAGTFGALAAMTVISVILGRTF 178
           FL +LGD ++  A+  LAAR S +   VF G   ALA  T+++V+LGR  
Sbjct: 9   FLAELGDKTQ-LATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWL 57

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG2881	294	consensus Predicted membrane protein [Function unk	100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.84
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.8
COG2119	190	Predicted membrane protein [Function unknown]	99.79
KOG2881	294	consensus Predicted membrane protein [Function unk	99.31
COG4280	236	Predicted membrane protein [Function unknown]	97.95
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	97.38
PRK11469	188	hypothetical protein; Provisional	96.96
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	95.45
PF03741	183	TerC: Integral membrane protein TerC family; Inter	95.16
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	95.12
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	94.96
COG1971	190	Predicted membrane protein [Function unknown]	93.61
TIGR00145	283	FTR1 family protein. A characterized member from y	91.79
TIGR00948	177	2a75 L-lysine exporter.	90.65
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	90.27
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	89.52
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	88.68
COG0861	254	TerC Membrane protein TerC, possibly involved in t	87.7
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	87.51
PRK09304	207	arginine exporter protein; Provisional	86.27
PRK10995	221	inner membrane protein; Provisional	85.76
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	83.99
COG4300	205	CadD Predicted permease, cadmium resistance protei	83.51
COG0730	258	Predicted permeases [General function prediction o	82.85
PF01914	203	MarC: MarC family integral membrane protein; Inter	82.1
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	81.17

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=2.7e-46  Score=350.36  Aligned_cols=189  Identities=36%  Similarity=0.564  Sum_probs=159.0

Q ss_pred             hHHHHhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHH
Q 020701          120 VDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI  199 (322)
Q Consensus       120 s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~  199 (322)
                      .+|+.++..| |++||||| |||++++|||||+|..||.|++.||++||++|+++|+.   .++++|++|       +++
T Consensus        67 ~~f~~SiSmI-~vsEiGDK-TFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~a---ap~lipr~~-------T~~  134 (294)
T KOG2881|consen   67 QGFTASISMI-FVSEIGDK-TFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWA---APNLIPRKY-------TYY  134 (294)
T ss_pred             HHHHHhhhee-eeeeccch-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh---hhhhchHHH-------HHH
Confidence            6777777665 99999996 99999999999999999999999999999999999986   458899998       899


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCchh--HHHHHHHhhhhcc----------CCCcch---------hhhH-HHHHHHHH
Q 020701          200 AAVCLLVYFGVSTLLDAASTDGLKSED--EQKEAELAVSEFS----------GNGAGI---------IAAA-STIISTFT  257 (322)
Q Consensus       200 ~A~~LFl~FGl~~L~~a~~~~~~~~ed--E~~eaE~~v~~~~----------~~~~g~---------~~~~-~~fl~aF~  257 (322)
                      ++++||++||+|||+|+|++.+.+++|  ||.|+|++-++.+          ++..+.         ...+ +.|+++|.
T Consensus       135 ~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFs  214 (294)
T KOG2881|consen  135 LATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFS  214 (294)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHH
Confidence            999999999999999999865543333  3444544432111          001110         0111 47999999


Q ss_pred             HHHHhhcCchhHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701          258 LVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL  320 (322)
Q Consensus       258 liFLAE~GDKTQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG  320 (322)
                      ++|++||||||||+|++|||+.||++|++|+++||.+||++||++|++++++|++|+|.+++|
T Consensus       215 ltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~gg  277 (294)
T KOG2881|consen  215 LTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGG  277 (294)
T ss_pred             HHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecc
Confidence            999999999999999999999999999999999999999999999999999999999998877

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3.8e-43  Score=315.18  Aligned_cols=169  Identities=33%  Similarity=0.463  Sum_probs=147.7

Q ss_pred             hHHHHhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHH
Q 020701          120 VDFASGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI  199 (322)
Q Consensus       120 s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~  199 (322)
                      ++|+.++..+ +++|+||||| +++++||+||+|++||.|+.+|++.||.+|+++|++   .+..+|+++       .++
T Consensus         2 ~~~~~s~~~v-~laEiGDKT~-lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~---~~~~~~~~~-------~~~   69 (190)
T COG2119           2 EALLVSLLMV-ALAEIGDKTQ-LIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHA---AASLLPERP-------LAW   69 (190)
T ss_pred             hhHHHHHHHH-HHHHhccHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH---HhccCchhH-------HHH
Confidence            5677777666 8999999855 667999999999999999999999999999999997   667889998       899


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHhhc
Q 020701          200 AAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAAS  279 (322)
Q Consensus       200 ~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaLAAr~  279 (322)
                      ..+++|++||+|+++|+-+      ++|+.+.              ..++++|.++|+++|++||||||||+|++||++|
T Consensus        70 ~~~~~Flafav~~l~edk~------~~~e~~~--------------~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~  129 (190)
T COG2119          70 ASGVLFLAFAVWMLIEDKE------DDEEAQA--------------ASPRGVFVTTFITFFLAELGDKTQIATIALAADY  129 (190)
T ss_pred             HHHHHHHHHHHHHhccccc------ccccccc--------------cccccHHHHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence            9999999999999999322      1221110              1234689999999999999999999999999997


Q ss_pred             C-CceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701          280 S-PLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL  320 (322)
Q Consensus       280 ~-p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG  320 (322)
                      + |+.|++|+++||++|++++|++|+++++|+|+|+++.++|
T Consensus       130 ~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aa  171 (190)
T COG2119         130 HSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAA  171 (190)
T ss_pred             CCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            5 5999999999999999999999999999999999999876

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.84  E-value=1.3e-21  Score=154.09  Aligned_cols=69  Identities=41%  Similarity=0.503  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHhhc--CCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701          252 IISTFTLVFVAEWGDKSFFSTIALAAAS--SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL  320 (322)
Q Consensus       252 fl~aF~liFLAE~GDKTQLaTiaLAAr~--~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG  320 (322)
                      |+++|.++|+||||||||++|++||+||  +|+.|++|+.+|++++++++|++|+++.+++|++++++++|
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~   71 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAG   71 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            5789999999999999999999999999  89999999999999999999999999999999999999986

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.80  E-value=6e-20  Score=144.68  Aligned_cols=76  Identities=37%  Similarity=0.524  Sum_probs=68.7

Q ss_pred             HHHhhhhhHHhhccCchHHHHHHHHHHccC--CcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHH
Q 020701          122 FASGLQSFPFLGDLGDISRGFASALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI  199 (322)
Q Consensus       122 F~~~~~~iifLAELGDKkTf~aa~lLAar~--~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~  199 (322)
                      |++++..+ |++|+||||| ++++.||+||  +|+.|++|+++|++++|+++|++|++   +.+++|+++       +++
T Consensus         1 F~~sf~~i-flaE~GDKTQ-l~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~---l~~~ip~~~-------i~~   68 (78)
T PF01169_consen    1 FLTSFLLI-FLAELGDKTQ-LATIALAARYPRNPWPVFAGATLALALATGLAVLLGSW---LASRIPERY-------IKW   68 (78)
T ss_pred             CHHHHHHH-HHHHhCcHHH-HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHH-------HHH
Confidence            55667666 9999999866 6789999999  79999999999999999999999987   678999998       999


Q ss_pred             HHHHHHHHHH
Q 020701          200 AAVCLLVYFG  209 (322)
Q Consensus       200 ~A~~LFl~FG  209 (322)
                      +++++|+.||
T Consensus        69 ~~~~lFl~fG   78 (78)
T PF01169_consen   69 VAGALFLLFG   78 (78)
T ss_pred             HHHHHHHHHC
Confidence            9999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.79  E-value=2.9e-19  Score=161.27  Aligned_cols=106  Identities=28%  Similarity=0.408  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhcCCcc-------hhhhhHHHHhhhhhHHhhccCchHHHHHHHHHHccCCc-chhhHHHHHHHHHHHHH
Q 020701           99 IKFVMFFGLLTLQGSQT-------AVAAVDFASGLQSFPFLGDLGDISRGFASALLAARNSA-ATVFAGTFGALAAMTVI  170 (322)
Q Consensus        99 ~~~~l~fg~~tl~~~~~-------~~~~s~F~~~~~~iifLAELGDKkTf~aa~lLAar~~~-~~Vf~Gs~~AL~lmt~L  170 (322)
                      -..|++||+|+++++..       +.....|..+|..+ |++|+||||| ++|+.||++|+. |.||+|+.+|+++++++
T Consensus        72 ~~~Flafav~~l~edk~~~~e~~~~~~~~~f~~tfi~~-FlaE~GDKTQ-iATIaLaA~~~~~~~V~~Gt~lg~~l~s~l  149 (190)
T COG2119          72 GVLFLAFAVWMLIEDKEDDEEAQAASPRGVFVTTFITF-FLAELGDKTQ-IATIALAADYHSPWAVFAGTTLGMILASVL  149 (190)
T ss_pred             HHHHHHHHHHHhcccccccccccccccccHHHHHHHHH-HHHHhccHHH-HHHHHHhhcCCCceeeehhhHHHHHHHHHH
Confidence            45799999999999864       23345899988887 9999999866 899999999985 99999999999999999


Q ss_pred             HHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701          171 SVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA  216 (322)
Q Consensus       171 SV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a  216 (322)
                      +|++|++   +++.+|.+.       ++.+++++|++||+..+|+.
T Consensus       150 aVl~G~~---ia~ki~~r~-------l~~~aallFl~fal~~~~~~  185 (190)
T COG2119         150 AVLLGKL---IAGKLPERL-------LRFIAALLFLIFALVLLWQV  185 (190)
T ss_pred             HHHHHHH---HHccCCHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            9999997   679999997       99999999999999999984

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.31  E-value=9.1e-13  Score=125.03  Aligned_cols=81  Identities=25%  Similarity=0.344  Sum_probs=73.0

Q ss_pred             HhhhhhHHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHH
Q 020701          124 SGLQSFPFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVC  203 (322)
Q Consensus       124 ~~~~~iifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~  203 (322)
                      =+|.+ +|++|||||+| ++++.||++-+++.|++|..+++.++|++||+.|+.   +++.|+.|.       +.+..++
T Consensus       211 kaFsl-tF~aEwGDRSQ-laTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~---lAskIS~rt-------Vt~~ggi  278 (294)
T KOG2881|consen  211 KAFSL-TFLAEWGDRSQ-LATIALAADENPLGVAIGAIIGHALCTGLAVIGGKY---LASKISVRT-------VTLIGGI  278 (294)
T ss_pred             HHHHH-HHHHHhccHHH-HHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHH---HhhhheeEE-------EEEecch
Confidence            34544 59999999988 789999999999999999999999999999999985   789999885       7789999


Q ss_pred             HHHHHHHHHhhcc
Q 020701          204 LLVYFGVSTLLDA  216 (322)
Q Consensus       204 LFl~FGl~~L~~a  216 (322)
                      +|++||+..++.+
T Consensus       279 ~Fi~Fgl~~i~~~  291 (294)
T KOG2881|consen  279 LFIIFGLVYIFQG  291 (294)
T ss_pred             hHHHHHHHHHhcC
Confidence            9999999999874

>COG4280 Predicted membrane protein [Function unknown]

Probab=97.95  E-value=3.8e-05  Score=71.51  Aligned_cols=178  Identities=24%  Similarity=0.266  Sum_probs=112.6

Q ss_pred             hHHHHhhhhh-HHhhccCchHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHH
Q 020701          120 VDFASGLQSF-PFLGDLGDISRGFASALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD  198 (322)
Q Consensus       120 s~F~~~~~~i-ifLAELGDKkTf~aa~lLAar~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~  198 (322)
                      |-|++++.+- +=+-|.+-     +++.-..-|++..-+.|+.+++++.-.++.++|..+    .++|-.+       .+
T Consensus         4 si~lAAl~sSlvElvEa~a-----Ia~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lq   67 (236)
T COG4280           4 SIFLAALGSSLVELVEAGA-----IAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQ   67 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HH
Confidence            4566666543 12344443     234556667899999999999999999999999964    6789887       99


Q ss_pred             HHHHHHHHHHHHHHhhccccC-CCC-CchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 020701          199 IAAVCLLVYFGVSTLLDAAST-DGL-KSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALA  276 (322)
Q Consensus       199 ~~A~~LFl~FGl~~L~~a~~~-~~~-~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaLA  276 (322)
                      ++++++.++||.+-++.+.+. .+. +..+|++-+|-.+.+-+.+  | . .+-.++.+|-.+.+=  |=---++.++|.
T Consensus        68 iv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~leE~~~ldq~e~--g-~-~~la~l~~fk~v~Le--glEv~~iVialg  141 (236)
T COG4280          68 IVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEEGIVLDQEEE--G-F-SKLALLVVFKVVALE--GLEVSLIVIALG  141 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHhhhhhcccccc--c-c-hhhhHHHHhHHHHHh--hheeeeeeeeec
Confidence            999999999999999887431 110 1111222112222222212  2 1 122344444333221  223345566666


Q ss_pred             hhc-CCceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHhhhcC
Q 020701          277 AAS-SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL  320 (322)
Q Consensus       277 Ar~-~p~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~~~aG  320 (322)
                      +.+ .+..-..|+..|.++.-.++...-..++ ++|+..+|+.+|
T Consensus       142 aa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~~lKfvag  185 (236)
T COG4280         142 AASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEPHLKFVAG  185 (236)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCchhHHHHHH
Confidence            665 4556777777777777777777777775 589999998876

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=97.38  E-value=0.0018  Score=59.35  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             HHHHHHHHHccCCc--chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701          140 RGFASALLAARNSA--ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA  217 (322)
Q Consensus       140 Tf~aa~lLAar~~~--~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~  217 (322)
                      .|-+.+...++.-+  +..-+-......+|+.++..+|+.   +.+++|.++       .++++++++++.|+||++|++
T Consensus        14 af~vgi~~G~~~~~~~~~~~l~ig~~~~~~~~lg~~~G~~---~~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~   83 (206)
T TIGR02840        14 SFGVGIAYGLRKIKIPFLSNLIIAVISGLFIFISMLLGKF---LAKFLPPKV-------TEILGAFILIAIGIWIIYNAF   83 (206)
T ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhchhh-------HHHHHHHHHHHHHHHHHHHHH
Confidence            44444445544322  222233333445899999999986   668898876       799999999999999999998


Q ss_pred             cCCC
Q 020701          218 STDG  221 (322)
Q Consensus       218 ~~~~  221 (322)
                      +.++
T Consensus        84 ~~~~   87 (206)
T TIGR02840        84 RPKK   87 (206)
T ss_pred             hhhc
Confidence            7443

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PRK11469 hypothetical protein; Provisional

Probab=96.96  E-value=0.0021  Score=58.32  Aligned_cols=45  Identities=13%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCC
Q 020701          165 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD  220 (322)
Q Consensus       165 ~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~  220 (322)
                      .+|+.++-.+|++   +.+++|. +       .+|++..++++.|+||++|+++.+
T Consensus        48 ~~m~~~g~~~G~~---l~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~   92 (188)
T PRK11469         48 TLTPLIGWGMGML---ASRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGA   92 (188)
T ss_pred             HHHHHHHHHHHHH---HHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6788888899986   4566665 4       789999999999999999998744

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=95.45  E-value=0.66  Score=40.48  Aligned_cols=70  Identities=16%  Similarity=0.088  Sum_probs=46.6

Q ss_pred             HHHHHHccCCc---chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccC
Q 020701          143 ASALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST  219 (322)
Q Consensus       143 aa~lLAar~~~---~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~  219 (322)
                      ..+--++++++   ..+.+|...+-.+...+++..-..   +.+..|.-     ..++++++++.++++|.++++...+.
T Consensus        13 ~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~---l~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~~~   84 (191)
T PF01810_consen   13 LVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSA---LLKSSPWL-----FMILKLLGALYLLYLGYKLLRSKFSS   84 (191)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHH-----HHHHHHHHHHHHHHHHHHHHhcccCc
Confidence            34566677764   466677777777776666555443   32333433     24689999999999999999986554


Q ss_pred             C
Q 020701          220 D  220 (322)
Q Consensus       220 ~  220 (322)
                      +
T Consensus        85 ~   85 (191)
T PF01810_consen   85 K   85 (191)
T ss_pred             c
Confidence            3

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=95.16  E-value=0.18  Score=45.70  Aligned_cols=132  Identities=18%  Similarity=0.279  Sum_probs=80.3

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHH
Q 020701          151 NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE  230 (322)
Q Consensus       151 ~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~e  230 (322)
                      ++++..+.|..+|+++=.++-......+    +..  .       .++++.|+..++-|++++++..+.|.   +++..+
T Consensus        29 ~r~kal~~Gi~~A~~lR~~~i~~~~~ll----~~~--~-------~i~~igG~~Ll~~a~k~~~~~~~~d~---~~~~~~   92 (183)
T PF03741_consen   29 QRRKALFWGIIGAIVLRIIFIFLASWLL----SIF--P-------WILLIGGLFLLYIAIKLLHEERDEDP---ENAEVE   92 (183)
T ss_pred             HhhhhHHHhHHHHHHHHHHHHHHHHHHH----HHH--H-------HHHHHHHHHHHHHHHHHHHhcccccc---chhhhh
Confidence            3578999999999966555544444332    222  2       37888888889999999988441111   111111


Q ss_pred             HHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhc--CchhHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhhh
Q 020701          231 AELAVSEFSGNGAGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGT  308 (322)
Q Consensus       231 aE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~--GDKTQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La~  308 (322)
                      .+   ++...      .....++.+...+-++-+  -=-+=++.++++  .+++.++.|.+.+....-..+-.+.+++.+
T Consensus        93 ~~---~~~~~------~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~  161 (183)
T PF03741_consen   93 EE---KKFFP------VSKSSLWLAVIQIELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLER  161 (183)
T ss_pred             hh---hcccc------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   01100      111345555544433311  112445666666  788999999999999999999999998876


Q ss_pred             c
Q 020701          309 F  309 (322)
Q Consensus       309 ~  309 (322)
                      +
T Consensus       162 ~  162 (183)
T PF03741_consen  162 F  162 (183)
T ss_pred             H
Confidence            5

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=95.12  E-value=0.074  Score=48.89  Aligned_cols=52  Identities=12%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701          153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD  215 (322)
Q Consensus       153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~  215 (322)
                      ++.|++|=.++..+.-++|.+.+..+    .++|++|       +--+-|.+=+++|+|.++.
T Consensus        25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l----~~ip~~w-------iLGlLGliPI~lGi~~l~~   76 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILVLASLLGAFGL----LFIPPEW-------ILGLLGLIPIYLGIKALFS   76 (191)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHHHHHHHHHHHHHHHHHc
Confidence            78999999999999999999888753    5789887       4334555678999998876

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=94.96  E-value=1.3  Score=43.63  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHhcCCcchhhhhHHHHhhhhhHHhhccCchHHHHHHHHHHc-----cCCcchhhHHHHHHHHHHHHH
Q 020701           96 SGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASALLAA-----RNSAATVFAGTFGALAAMTVI  170 (322)
Q Consensus        96 ~~~~~~~l~fg~~tl~~~~~~~~~s~F~~~~~~iifLAELGDKkTf~aa~lLAa-----r~~~~~Vf~Gs~~AL~lmt~L  170 (322)
                      .......++||.+.+.-. .......|+++...=..||  +|. =+..+++.+.     +++++..+.|..+|+++ =++
T Consensus        40 ~~~v~la~~F~~~i~~~~-g~~~~~~f~tg~llE~~LS--vDN-~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvl-R~i  114 (302)
T TIGR03718        40 AFWVSLALLFGGGVWFYL-GGEAALEFLTGYLIEKSLS--VDN-LFVFLLIFSYFAVPREYQHRVLFWGILGALVL-RAI  114 (302)
T ss_pred             HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH--hHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHH
Confidence            445566788887666532 1334456776554322222  685 5545555554     35578999999999865 445


Q ss_pred             HHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701          171 SVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD  215 (322)
Q Consensus       171 SV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~  215 (322)
                      -+.+|.++  + +.+|  +       +.++.|+..++-|++++++
T Consensus       115 ~i~~g~~L--i-~~f~--w-------i~~ifG~fLi~~a~k~~~~  147 (302)
T TIGR03718       115 FIALGAAL--I-EQFH--W-------VLYIFGAFLLYTGIKMLFE  147 (302)
T ss_pred             HHHHHHHH--H-HHhH--H-------HHHHHHHHHHHHHHHHHhh
Confidence            56666552  2 2222  2       6777777778888888876

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>COG1971 Predicted membrane protein [Function unknown]

Probab=93.61  E-value=0.26  Score=45.62  Aligned_cols=46  Identities=15%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCC
Q 020701          165 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDG  221 (322)
Q Consensus       165 ~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~  221 (322)
                      ++|.++.-+.|..+   ++++ ..+       .+|++++++.+.|+||+++++++++
T Consensus        48 ~i~pliG~~~g~~~---s~~i-~~~-------~~wigf~lL~~lG~~mI~e~f~~~~   93 (190)
T COG1971          48 AIMPLIGWFIGKFL---STFI-AEW-------AHWIGFVLLIILGLKMIIEGFKNEE   93 (190)
T ss_pred             HHHHHHHHHHHHHH---HHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhchhh
Confidence            45566666666543   2222 344       7899999999999999999998654

>TIGR00145 FTR1 family protein

Probab=91.79  E-value=1.9  Score=41.83  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=39.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701          153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA  216 (322)
Q Consensus       153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a  216 (322)
                      +.+|+.|+.+|+++.-++++++-..+..++.-..+++   -.-+..++|+++..++++||...+
T Consensus        38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el---~eg~~~lvAv~~l~~m~~Wm~~~~   98 (283)
T TIGR00145        38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKEL---LEGIFGVIAVVMLSYMGLWMLRMQ   98 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999998887777776654321111110110   012366788889999999999653

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>TIGR00948 2a75 L-lysine exporter

Probab=90.65  E-value=4.4  Score=35.33  Aligned_cols=66  Identities=11%  Similarity=0.019  Sum_probs=43.5

Q ss_pred             HHHHHccCCc-chhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 020701          144 SALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA  217 (322)
Q Consensus       144 a~lLAar~~~-~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~  217 (322)
                      .+-.++++++ ..+-+|...|..+...++++.-..   +-+..|.-+     ..+++++++..+++|..+++.+.
T Consensus        12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~---ll~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~   78 (177)
T TIGR00948        12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAA---LLAASPILL-----AVLTWGGALFLLWYGFLAAKTAW   78 (177)
T ss_pred             HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456666654 467788888887777665554433   223345443     35788888888999999998754

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=90.27  E-value=1.7  Score=39.26  Aligned_cols=117  Identities=17%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHH
Q 020701          153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE  232 (322)
Q Consensus       153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE  232 (322)
                      ++..+.|...|+++.-+........+    + +|         ..++++|++.++.|+.|+.+    +.++++.   ++ 
T Consensus        33 ~~~~~~G~~~A~vlr~if~~~G~~ll----~-~~---------~~~iaGGllLl~ia~~ml~~----~~~~~~~---~~-   90 (176)
T TIGR03717        33 KKAIFWGTAGAIVLRILLTAVAVYLL----A-IP---------FLKLIGGLLLLWIGWKLLLE----EEEEQGG---DV-   90 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----H-hH---------HHHHHHHHHHHHHHHHHHhc----ccccccc---cc-
Confidence            57899999999998877766665443    2 22         37899999999999999876    2111110   00 


Q ss_pred             HhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhH-----HHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHHhh
Q 020701          233 LAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSF-----FSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLG  307 (322)
Q Consensus       233 ~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQ-----LaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~La  307 (322)
                          +          +...++.+...+-   +=|-.+     ++.++.+ +.+.+.++.|.+++..+.-..+-++.+++.
T Consensus        91 ----~----------~~~~~~~~v~~I~---~~D~~fS~DsV~a~~~~~-~~~~~li~~g~~i~i~~m~~~s~~~~~~~~  152 (176)
T TIGR03717        91 ----K----------GSTTLWAAIKTIV---IADAVMSLDNVLAVAGAA-HGHLGLLIFGLLLSIPIIVWGSTLILKLMD  152 (176)
T ss_pred             ----c----------ccCcHHHHHHHHH---HHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0          0123455544433   334332     3333332 347788888888888888888887777776


Q ss_pred             hc
Q 020701          308 TF  309 (322)
Q Consensus       308 ~~  309 (322)
                      ++
T Consensus       153 ~~  154 (176)
T TIGR03717       153 RF  154 (176)
T ss_pred             HH
Confidence            54

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=89.52  E-value=1.6  Score=40.90  Aligned_cols=122  Identities=21%  Similarity=0.244  Sum_probs=73.9

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHH
Q 020701          151 NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE  230 (322)
Q Consensus       151 ~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~e  230 (322)
                      ++++..+.|..+|+++=-++.......+    + +|  +       ++++.|++.++-|.+++++    +++++++++  
T Consensus        26 ~r~~al~~Gi~gAivlR~i~i~~~~~Ll----~-~~--~-------l~~iGG~~Ll~~~~k~l~~----~~~~~~~~~--   85 (215)
T TIGR03716        26 QRKKALFYGLIGAYVFRFIALFLASFLI----K-FW--W-------IKAIGALYLLYLAIKHFRK----KKKGKEDEE--   85 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HH--H-------HHHHHHHHHHHHHHHHHHh----ccccccccc--
Confidence            3468899999999887665554444322    2 23  3       6788888888888888876    221111111  


Q ss_pred             HHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCch-----hHHHHHHHHhhcCCceEeeHHHHHHHHHHHHHHHHHHH
Q 020701          231 AELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDK-----SFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSL  305 (322)
Q Consensus       231 aE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDK-----TQLaTiaLAAr~~p~~V~~Ga~la~~l~t~LAVl~G~~  305 (322)
                      .+    . +++  +     ..|+.+...+   |.=|-     +=++.++++  .+++.++.|.+.+....-..+-++.++
T Consensus        86 ~~----~-~~~--~-----~~f~~av~~I---~~~DlvFSlDSV~A~~git--~~~~ii~~g~~~sIl~lr~~s~~l~~l  148 (215)
T TIGR03716        86 AE----K-KKA--H-----SGFWRTVLKV---ELMDIAFSVDSILAAVALS--GQFWVVFLGGIIGILIMRFAATIFVKL  148 (215)
T ss_pred             cc----c-ccc--c-----chHHHHHHHH---HHHHHHHHhhhHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10    0 000  1     2345444333   33343     334555553  788999999999998888888888887


Q ss_pred             hhhc
Q 020701          306 LGTF  309 (322)
Q Consensus       306 La~~  309 (322)
                      +.++
T Consensus       149 i~r~  152 (215)
T TIGR03716       149 LERF  152 (215)
T ss_pred             HHHH
Confidence            7654

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=88.68  E-value=2.9  Score=40.41  Aligned_cols=155  Identities=22%  Similarity=0.163  Sum_probs=87.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCc----hhHHHHHHHHHHHHHHHHhhccccCCCCCchhHH
Q 020701          153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDL----PIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQ  228 (322)
Q Consensus       153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~----~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~  228 (322)
                      ..+|+.|+..|+++.-.+++++-...    ..++..+....-    -.+..++.++-...++||.+.+.+..++   -|+
T Consensus        35 ~~~V~~G~~~g~~~s~~~~~~~~~~~----~~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~~~---~~~  107 (306)
T PF03239_consen   35 RRWVWLGVAAGLVASLVIGAVFAVIF----YTLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMKGE---WED  107 (306)
T ss_pred             hheeeecHhHHHHHHHHHHHHHHHHH----HhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh---HHH
Confidence            48999999999998888887777643    334421100000    1245667777888999999864332221   111


Q ss_pred             HHHHHhhhhc------cCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHHHHHHhhcC--CceEeeHHHHHHHHHHHHHH
Q 020701          229 KEAELAVSEF------SGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS--PLGVIGGALAGHVVATLLAV  300 (322)
Q Consensus       229 ~eaE~~v~~~------~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaTiaLAAr~~--p~~V~~Ga~la~~l~t~LAV  300 (322)
                      + .+..+++.      ..+.++....+..++.+|+.+ +=| |=-|=+...++.+..+  ...+..|+.+|.++..+++.
T Consensus       108 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~  184 (306)
T PF03239_consen  108 K-LAKALSSGSEDARASQKDEGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGW  184 (306)
T ss_pred             H-HHHHHhhccchhhhhhhccccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            1 00111100      001111122345566666432 222 5556666666666643  57788888888888888888


Q ss_pred             HHHHHhhhcCCHHHHhhh
Q 020701          301 LGGSLLGTFLSEKVYSNF  318 (322)
Q Consensus       301 l~G~~La~~lp~r~I~~~  318 (322)
                      ++-+.. .++|.+..-.+
T Consensus       185 ~~~~~~-~~i~~~~~f~~  201 (306)
T PF03239_consen  185 LLYRGL-IRISLRSFFII  201 (306)
T ss_pred             HHHHHH-HhcChHHHHHH
Confidence            876654 45777655443

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=87.70  E-value=13  Score=35.70  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=85.6

Q ss_pred             CchHHHHHHHHHHccC----CcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHH
Q 020701          136 GDISRGFASALLAARN----SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS  211 (322)
Q Consensus       136 GDKkTf~aa~lLAar~----~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~  211 (322)
                      +|. =+++ ++++.+.    +++..+.|..+|+++=.+ -...|.|+   -+ ++..        .-++.+..+++-++.
T Consensus        32 iDN-~ivi-ai~~~~Lp~~qr~ral~~Gl~~A~v~R~~-ll~~~s~L---l~-l~~~--------l~~~fg~~L~~~~~~   96 (254)
T COG0861          32 IDN-AIVI-AILASKLPPKQRKKALFIGLAGALVLRII-LLASISWL---LT-LTQP--------LLYIFGLYLLWRDIK   96 (254)
T ss_pred             hhH-HHHH-HHHHhhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HH-hhHH--------HHHHHHHHHHHHHHH
Confidence            685 4443 3555554    367899999999876544 44555553   12 1211        223456667788888


Q ss_pred             HhhccccCCCCCchhHHHHHHHhhhhccCCC---cchhhhHHHHHHHHHHHHHhhc--CchhHHHHHHHHhhcCCceEee
Q 020701          212 TLLDAASTDGLKSEDEQKEAELAVSEFSGNG---AGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIG  286 (322)
Q Consensus       212 ~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~---~g~~~~~~~fl~aF~liFLAE~--GDKTQLaTiaLAAr~~p~~V~~  286 (322)
                      +++++...       +.++..+...+.+++.   .+......+|+.+...|-++-.  .=-|-++.++++  .+++.+++
T Consensus        97 ll~~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~~~~im~~  167 (254)
T COG0861          97 LLLGGLFL-------LFKATKELHERLEGEEFFVNGKLKKATPFWGAIIQIELADLVFSLDSVIAAVGMA--GHPFVMVT  167 (254)
T ss_pred             HHhcchhH-------HHHHHHHHhhhhccccccccccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHh--cCchHHHH
Confidence            88774221       1111111101111111   0000023457777766555532  234556666666  77899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Q 020701          287 GALAGHVVATLLAVLGGSLLGTFL  310 (322)
Q Consensus       287 Ga~la~~l~t~LAVl~G~~La~~l  310 (322)
                      |.+.|..++=..+=.+.+++.++-
T Consensus       168 a~i~aI~~m~~aa~~l~~ll~r~p  191 (254)
T COG0861         168 AVIFAILVMRFAAFLLARLLERHP  191 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHch
Confidence            999999999888888888886653

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=87.51  E-value=7  Score=34.04  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=41.6

Q ss_pred             HHHHccCC---cchhhHHHHHHHHHHHHHHHH-HhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 020701          145 ALLAARNS---AATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA  216 (322)
Q Consensus       145 ~lLAar~~---~~~Vf~Gs~~AL~lmt~LSV~-lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a  216 (322)
                      +--+++++   .+.+.+|..+|..+...+++. ++..    -+..|.-.     .++++++++..+++|+.++++.
T Consensus        10 ~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l----~~~~~~~~-----~~l~~~Ga~yLl~lg~~~~~~~   76 (185)
T TIGR00949        10 MQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVL----ISKSVILF-----TVIKWLGGAYLIYLGIKMLRKK   76 (185)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHH-----HHHHHHHHHHHHHHHHHHHHcc
Confidence            44555554   356778888888887776665 3333    23345322     3578888888899999999864

>PRK09304 arginine exporter protein; Provisional

Probab=86.27  E-value=18  Score=32.54  Aligned_cols=75  Identities=12%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             hhccCchHHHHHHHHHHccCC-cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHH
Q 020701          132 LGDLGDISRGFASALLAARNS-AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV  210 (322)
Q Consensus       132 LAELGDKkTf~aa~lLAar~~-~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl  210 (322)
                      ..=-|-  ..+..+--+.+++ ......|...+..+...+++..-..   +-+..|.-.     .++++++++-.+++|.
T Consensus        16 ~~tPGP--~~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~---Ll~~~p~~~-----~~l~~~Ga~YLlyLg~   85 (207)
T PRK09304         16 ILPLGP--QNAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSA---LLMQSPWLL-----ALVTWGGVAFLLWYGF   85 (207)
T ss_pred             HhccCh--HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence            345555  3344455566654 3466667777666665554433322   223335433     4578888888899999


Q ss_pred             HHhhcc
Q 020701          211 STLLDA  216 (322)
Q Consensus       211 ~~L~~a  216 (322)
                      .+++..
T Consensus        86 ~~~rs~   91 (207)
T PRK09304         86 GAFKTA   91 (207)
T ss_pred             HHHHHh
Confidence            999874

>PRK10995 inner membrane protein; Provisional

Probab=85.76  E-value=2.5  Score=39.08  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhccc
Q 020701          194 LPIDDIAAVCLLVYFGVSTLLDAA  217 (322)
Q Consensus       194 ~~i~~~~A~~LFl~FGl~~L~~a~  217 (322)
                      .+-.+++++++.+++|+.|+++..
T Consensus        73 ~~a~rIaGGilL~~igi~ml~~~~   96 (221)
T PRK10995         73 IPGLRIAGGLIVAFIGFRMLFPQQ   96 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            345899999999999999997643

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=83.99  E-value=10  Score=36.93  Aligned_cols=81  Identities=10%  Similarity=0.125  Sum_probs=49.8

Q ss_pred             hccCchHHHHHHHHHHcc-CC-cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHH
Q 020701          133 GDLGDISRGFASALLAAR-NS-AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV  210 (322)
Q Consensus       133 AELGDKkTf~aa~lLAar-~~-~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl  210 (322)
                      .|=|--|..+++ -++++ -+ +..+.+|...++.= ++...+++.+.-++.+.+|..   ...++...+.+++.+.+|+
T Consensus        29 lgPGHGKavi~s-Ylv~~~~~~~~a~~lgl~~~l~h-ta~~lv~~~~~~~l~~~~~~~---~~~~~le~~S~~lii~lGl  103 (279)
T PRK10019         29 LEPGHSKTMMAA-FIIAIKGTIKQAVMLGLAATISH-TAVVWLIAFGGMYLSRRFTAQ---SAEPWLQLISAVIIISTAF  103 (279)
T ss_pred             cCCCcchHHHhh-hhhcCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHH
Confidence            476776676655 55554 34 56788887776654 333333332211234455521   1236688999999999999


Q ss_pred             HHhhcccc
Q 020701          211 STLLDAAS  218 (322)
Q Consensus       211 ~~L~~a~~  218 (322)
                      |++|..++
T Consensus       104 ~ll~r~~r  111 (279)
T PRK10019        104 WMFWRTWR  111 (279)
T ss_pred             HHHHHHHH
Confidence            99998764

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=83.51  E-value=2.2  Score=39.80  Aligned_cols=56  Identities=13%  Similarity=0.225  Sum_probs=41.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhcccc
Q 020701          152 SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS  218 (322)
Q Consensus       152 ~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~  218 (322)
                      +.+.+++|=.++....-..|..+..    +.+++|++|       +--+-+..=++.|+|.++.+.+
T Consensus        35 ~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~-------I~glLGLIPi~LGik~l~~~d~   90 (205)
T COG4300          35 DILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW-------ILGLLGLIPIYLGIKVLILGDD   90 (205)
T ss_pred             cEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH-------HHHHHhHHHHHHhhHHhhcccC
Confidence            3688999988887777666665553    457889998       4445566678999999988544

>COG0730 Predicted permeases [General function prediction only]

Probab=82.85  E-value=8.9  Score=35.33  Aligned_cols=155  Identities=19%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHH
Q 020701          153 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE  232 (322)
Q Consensus       153 ~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE  232 (322)
                      +..|-.-...-+....++.+.+|.+   +...+|.++       .+..-+++.++.++++++.......+ +++++....
T Consensus        68 ~~~v~~~~~~~l~~~~~~G~~lG~~---l~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~  136 (258)
T COG0730          68 RGNVDWKLALILLLGALIGAFLGAL---LALLLPAEL-------LKLLFGLLLLLLALYMLLGPRLAKAE-DRAARLRPL  136 (258)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHhccccccc-ccccccCcc
Confidence            3344445555555666888888854   557788876       67667778889999999884320110 000000000


Q ss_pred             Hhhh-hccCCCcchhh----hHHHHHHHHHHHHHhhcCchhHHHHHHH---------HhhcC--CceEeeHHHHHHHHHH
Q 020701          233 LAVS-EFSGNGAGIIA----AASTIISTFTLVFVAEWGDKSFFSTIAL---------AAASS--PLGVIGGALAGHVVAT  296 (322)
Q Consensus       233 ~~v~-~~~~~~~g~~~----~~~~fl~aF~liFLAE~GDKTQLaTiaL---------AAr~~--p~~V~~Ga~la~~l~t  296 (322)
                      .... -.-+-..|..+    .-..+...-.+..+....+|--.+|-..         ++-|-  .-.+-......+.+.+
T Consensus       137 ~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~  216 (258)
T COG0730         137 LFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGS  216 (258)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            0000 00000001000    0011222333334444443332222111         11111  1112122222788899


Q ss_pred             HHHHHHHHHhhhcCCHHHHhhh
Q 020701          297 LLAVLGGSLLGTFLSEKVYSNF  318 (322)
Q Consensus       297 ~LAVl~G~~La~~lp~r~I~~~  318 (322)
                      .++..+|.++.+++|++.++++
T Consensus       217 ~~G~~lG~~l~~~~~~~~lr~~  238 (258)
T COG0730         217 ILGAYLGARLARRLSPKVLRRL  238 (258)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999999999998875

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=82.10  E-value=5.9  Score=36.37  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=58.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhccCCCcchhhhHHHHHHHHHHHHHhhcCchhHHHH
Q 020701          193 DLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFST  272 (322)
Q Consensus       193 ~~~i~~~~A~~LFl~FGl~~L~~a~~~~~~~~edE~~eaE~~v~~~~~~~~g~~~~~~~fl~aF~liFLAE~GDKTQLaT  272 (322)
                      +++-.++++|++++..|+.|+....+.++. .++|.+|+++. .+.     .+ .|.   .  +  =.+  -|.-|--++
T Consensus        68 sl~af~IaGGiiL~~ia~~ml~~~~~~~~~-~~~~~~~~~~~-~~~-----ai-~PL---a--~--Pll--aGPG~It~v  130 (203)
T PF01914_consen   68 SLPAFRIAGGIILFLIALEMLFGSPSSEKS-SPDEKEEAKDA-EDI-----AI-VPL---A--I--PLL--AGPGTITTV  130 (203)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCccccc-ccchhhhhccc-ccc-----ee-ccc---c--h--hhc--cChHHHHHH
Confidence            456689999999999999999874433111 11121111110 010     00 000   0  0  001  244444455


Q ss_pred             HHHHhhcCC---ceEeeHHHHHHHHHHHHHHHHHHHhhhcCCHHHHh
Q 020701          273 IALAAASSP---LGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYS  316 (322)
Q Consensus       273 iaLAAr~~p---~~V~~Ga~la~~l~t~LAVl~G~~La~~lp~r~I~  316 (322)
                      +.++++++.   ..+.+++.+...+.+.+.-..++++.+++.+..++
T Consensus       131 i~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~  177 (203)
T PF01914_consen  131 IVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQ  177 (203)
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence            556666543   34555666666777777777788888877766444

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=81.17  E-value=2.6  Score=39.09  Aligned_cols=55  Identities=13%  Similarity=0.298  Sum_probs=41.9

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhcchhhhcccCCcccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 020701          150 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD  215 (322)
Q Consensus       150 r~~~~~Vf~Gs~~AL~lmt~LSV~lG~~~~~i~~~LP~~~~~~~~~i~~~~A~~LFl~FGl~~L~~  215 (322)
                      +++++.|.+|=.++..+.-+.|++.+..    ...+|++|       +--+-|.+=+++|+|-+++
T Consensus        21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g----l~~iP~~w-------IlGlLGliPI~lGi~~l~~   75 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILILVSLLLAFG----VNLIPEKW-------VLGLLGLIPIYLGIKVAIK   75 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHHHHHHHHHHH----HHhCCHHH-------HHhHHhHHHHHHHHHHHhc
Confidence            5678999999999999888888886643    25789887       4233444458999998887

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 43/329 (13%), Positives = 88/329 (26%), Gaps = 130/329 (39%)

Query: 76  DVDCKNCK------MTRESVHNLANDSGLIKFVMF-FGLLTLQGSQTAVAAVDFASGLQ- 127
           + DCK+ +      +++E + ++      +   +  F  L  +  +     V+    L+ 
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRI 89

Query: 128 SFPFLGD----------------------LGDISRGFA--------------SALLAARN 151
           ++ FL                        L + ++ FA               ALL  R 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 152 SAATVFAGTFGA----LAAMTV---------------ISV-----------ILGRTFHYV 181
           +   +  G  G+    +A                   +++           +L +  + +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 182 D---EILPFRFGQTDLPIDDIAAV------------CLLV-----------YFGVS--TL 213
           D              L I  I A             CLLV            F +S   L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 214 L---DAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFT----LVFVAEWGD 266
           L       TD L +        +++   S               T T       + ++ D
Sbjct: 270 LTTRFKQVTDFLSA---ATTTHISLDHHS--------------MTLTPDEVKSLLLKYLD 312

Query: 267 KSFFSTIALAAASSPL--GVIGGALAGHV 293
                       ++P    +I  ++   +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00