Citrus Sinensis ID: 020717

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MSQSSQHVFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQMETQETEAFGSSRGNKNDRA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccccccccccccccEEEEEccccccccEEEEccccccccHHHHHHHHHHHHHccHHHEEEHHHHcccccccccccHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccHHcccccccccc
Coil and Loop (DISEMBL)
msqssqhvftnsppscssrftFYHSATNliknpnnlalpppitsrhllihishndytpfkfipnskfyhslkpnncsntsvvttqtndnfnldsLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTgklfenrqepsqeqdklktsdfidgaKQMETQEteafgssrgnkndra
Flexible Loop (DISEMBL)
msqssqhvftnsppscsSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIgaiirrrqwrrvcgekaraegresvnlvgriEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLfenrqepsqeqdklktsdFIDGAKQMEtqeteafgssrgnkndra
Low Complexity Region (SEG)
MSQSSQHVFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVllamqeqqqkqlelilaiGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQMETQETEAFGSSRGNKNDRA
Disordered region (IsUnstruct)
******************RFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARA*****VNLVGRIE*********ATILRVLSRQLEKLGVRFRVTRKALKDPITQ******************GDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGK**********************************************
Disordered Region (DISOPRED)
***********SPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIH*****************************************LDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSS**GLIGSRVLACGVVSLVCGVWIGAIIRRR**********************RIEKLEEDMKS*ATILRVLSRQLEKLGVRFRVTRKALKD****************RALAM***************LL**QEQQQKQLELILAIGKT************************************************
Disordered Region (DISEMBL)
**************SCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFE************KTSDFIDGAKQMETQ****************
Disordered Region (DISPRO)
*****Q*VFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKA******SVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFE*******************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQSSQHVFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRxxxxxxxxxxxxxxxxxxxxxLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVxxxxxxxxxxxxxxxxxxxxxQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQMETQETEAFGSSRGNKNDRA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
224083616	307	predicted protein [Populus trichocarpa]	0.925	0.970	0.517	6e-61
449451421	323	PREDICTED: uncharacterized protein LOC10	0.832	0.829	0.512	8e-61
449520022	246	PREDICTED: uncharacterized LOC101207421,	0.645	0.845	0.595	4e-59
356512685	293	PREDICTED: uncharacterized protein LOC10	0.658	0.723	0.608	1e-57
356525459	287	PREDICTED: uncharacterized protein LOC10	0.642	0.721	0.615	1e-55
18424929	300	uncharacterized protein [Arabidopsis tha	0.801	0.86	0.483	8e-55
359496689	193	PREDICTED: uncharacterized protein LOC10	0.593	0.989	0.621	4e-54
224093738	267	predicted protein [Populus trichocarpa]	0.726	0.876	0.554	2e-52
297797551	299	hypothetical protein ARALYDRAFT_496756 [	0.801	0.862	0.472	6e-51
296085648	139	unnamed protein product [Vitis vinifera]	0.431	1.0	0.664	5e-43

>gi|224083616|ref|XP_002307074.1| predicted protein [Populus trichocarpa] gi|222856523|gb|EEE94070.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 164/317 (51%), Positives = 216/317 (68%), Gaps = 19/317 (5%)

Query: 6   QHVFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNS 65
            H+FTNSPP  +  F+    +   +             SRH+   +  +++      P +
Sbjct: 8   HHLFTNSPPRITLLFSSSSLSLRNLS-----------LSRHVTTSLHSSNFHFKPQTPRN 56

Query: 66  KFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKS 125
            F  +LK      T  + TQ ++ FNLD  LSI+E+LC+ SSS+I I +A+       K+
Sbjct: 57  SFSFTLKAYQSDPT--IRTQVSNQFNLDQFLSIAELLCIISSSIITISYALNCTFS--KT 112

Query: 126 SLFGLIGSRV-LACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLE 184
              G+IGS    A G+V +V GV IGA IRRRQW R+C E  R EG  S+NLVGRIEKLE
Sbjct: 113 GALGVIGSNTGFAWGMVVMVSGVVIGAWIRRRQWWRICRETGR-EG--SLNLVGRIEKLE 169

Query: 185 EDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLE 244
           +DM+SSATI+RVLSRQLEKLG+RFRVTRKALK+PI + AALAQKNSEATRALA+Q ++LE
Sbjct: 170 QDMRSSATIIRVLSRQLEKLGIRFRVTRKALKEPIVETAALAQKNSEATRALALQENILE 229

Query: 245 KELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQME 304
           KELGE QK+LLAMQEQQQKQLELILAIGK+GK ++NR+E  +EQ+ +KTSD  +G  Q+E
Sbjct: 230 KELGETQKILLAMQEQQQKQLELILAIGKSGKSWDNRRERVEEQELIKTSDLTEGVNQLE 289

Query: 305 TQETEAFGSSRGNKNDR 321
           + E +   +S+ + N+R
Sbjct: 290 SHEAQPSVTSKRSNNNR 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451421|ref|XP_004143460.1| PREDICTED: uncharacterized protein LOC101207421 [Cucumis sativus]

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 142/277 (51%), Positives = 181/277 (65%), Gaps = 9/277 (3%)

Query: 26  ATNLIKNPNNLALPPPITSRHLLIHISHNDY---TPFKFIPNSKFYHSLKPN-NCSNTSV 81
           +T L +NP  ++LP P +     +H    DY   +PF F   S   H   P  + S    
Sbjct: 41  STFLSRNPC-VSLPFPPSRFPNTLHFQILDYKFRSPFNF--GSINAHHFCPRVSTSGGVG 97

Query: 82  VTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVV 141
                  +F++DSLLS +E  CL +S + ++GFA+       KS    + G  VL   ++
Sbjct: 98  RRPGGVADFDIDSLLSATEFFCLVASLIGSVGFALNCAKTRSKSLFLAVFGDGVLVGTIL 157

Query: 142 SLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQL 201
            LV GV IGA IRRRQW RV  E A+  G   VNL+ +  KLEED++SSAT++RVLSRQL
Sbjct: 158 FLVAGVAIGAWIRRRQWNRVFRETAK--GVLEVNLMEKTNKLEEDLRSSATLIRVLSRQL 215

Query: 202 EKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQ 261
           EKLG+RFRVTRKALK P+ + AALAQK SEATRALA++GD+LEKEL EIQKVLLAMQEQQ
Sbjct: 216 EKLGIRFRVTRKALKKPVEETAALAQKTSEATRALAVRGDILEKELAEIQKVLLAMQEQQ 275

Query: 262 QKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFID 298
           QKQL+LILAIG +GK++E+RQE S  Q  +   D ID
Sbjct: 276 QKQLDLILAIGNSGKMWESRQEHSGGQSHVGRHDLID 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520022|ref|XP_004167033.1| PREDICTED: uncharacterized LOC101207421, partial [Cucumis sativus]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 156/210 (74%), Gaps = 2/210 (0%)

Query: 89  NFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVW 148
           +F++DSLLS +E  CL +S + ++GFA+       KS    + G  VL   ++ LV GV 
Sbjct: 28  DFDIDSLLSATEFFCLVASLIGSVGFALNCAKTRSKSLFLAVFGDGVLVGTILFLVAGVA 87

Query: 149 IGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRF 208
           IGA IRRRQW RV  E A+  G   VNL+ +  KLEED++SSAT++RVLSRQLEKLG+RF
Sbjct: 88  IGAWIRRRQWNRVFRETAK--GVLEVNLMEKTNKLEEDLRSSATLIRVLSRQLEKLGIRF 145

Query: 209 RVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELI 268
           RVTRKALK P+ + AALAQK SEATRALA++GD+LEKEL EIQKVLLAMQEQQQKQL+LI
Sbjct: 146 RVTRKALKKPVEETAALAQKTSEATRALAVRGDILEKELAEIQKVLLAMQEQQQKQLDLI 205

Query: 269 LAIGKTGKLFENRQEPSQEQDKLKTSDFID 298
           LAIG +GK++E+RQE S  Q  +   D ID
Sbjct: 206 LAIGNSGKMWESRQEHSGGQSHVGRHDLID 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512685|ref|XP_003525047.1| PREDICTED: uncharacterized protein LOC100790782 [Glycine max]

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/217 (60%), Positives = 158/217 (72%), Gaps = 5/217 (2%)

Query: 91  NLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIG 150
           N DSLLS+ E  CL SS+V +   AV  G    K+ L   IG+R    G   LV GV +G
Sbjct: 81  NFDSLLSLLEFSCLLSSAVASAAAAVVAGS---KNELLVGIGTRAAPFGGALLVVGVLVG 137

Query: 151 AIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRV 210
           A IRRRQWRR C E  +  G   VNL+ RIEKLEEDM+SSAT++RVLSRQLEKLGVRFRV
Sbjct: 138 AWIRRRQWRRACVETGK--GGLEVNLLERIEKLEEDMRSSATVVRVLSRQLEKLGVRFRV 195

Query: 211 TRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILA 270
           TRKALKDPI + AALAQKNSEA RALA+Q D+LEKELGEIQ+VLLAMQEQQ+KQL+LILA
Sbjct: 196 TRKALKDPIAETAALAQKNSEAARALAVQSDILEKELGEIQQVLLAMQEQQRKQLDLILA 255

Query: 271 IGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQMETQE 307
           IGK  KL+E++ E S+  D L+ S+  +   + E  +
Sbjct: 256 IGKASKLWESKHETSERHDTLEMSNSAEDEVKQEVHQ 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525459|ref|XP_003531342.1| PREDICTED: uncharacterized protein LOC100809936 [Glycine max]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/213 (61%), Positives = 158/213 (74%), Gaps = 6/213 (2%)

Query: 91  NLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIG 150
           N DSLLS+ E  CL SS++ +   AV  G    K+ L   IG+R    G   LV GV +G
Sbjct: 75  NFDSLLSLLEFSCLLSSAISSAAAAVLAGS---KNELIAGIGARAAPFGGALLVVGVLVG 131

Query: 151 AIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRV 210
           A IRRRQWRRV  E  +  G   VNL+ RIEKLEED++SSAT++RVLSRQLEKLGVRFRV
Sbjct: 132 AWIRRRQWRRVSVEAGK--GGLEVNLLERIEKLEEDLRSSATVVRVLSRQLEKLGVRFRV 189

Query: 211 TRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILA 270
           TRK LKDPI + AALAQKNSEA RALA+Q D+LEKELGEIQ+VLLAMQEQQ+KQL+LILA
Sbjct: 190 TRKGLKDPIAETAALAQKNSEAARALAVQSDILEKELGEIQQVLLAMQEQQRKQLDLILA 249

Query: 271 IGKTGKLFENRQEPSQEQDKLKTSDFI-DGAKQ 302
           +GK  KL+E++QE ++  D L+ S+   DG KQ
Sbjct: 250 VGKASKLWESKQETNERHDTLELSNSAEDGVKQ 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424929|ref|NP_569009.1| uncharacterized protein [Arabidopsis thaliana] gi|10178187|dbj|BAB11661.1| unnamed protein product [Arabidopsis thaliana] gi|15028313|gb|AAK76633.1| unknown protein [Arabidopsis thaliana] gi|19310695|gb|AAL85078.1| unknown protein [Arabidopsis thaliana] gi|332010646|gb|AED98029.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 133/275 (48%), Positives = 179/275 (65%), Gaps = 17/275 (6%)

Query: 8   VFTNSPP---SCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPN 64
           +F+ S P   S  S   F  SA    +  ++++ P PI  RH+ I    N      +  +
Sbjct: 11  LFSGSTPVRISRRSNLCFAVSAARASRR-DSISFPQPIFLRHV-ISTQSNFEIDRNYRAH 68

Query: 65  SKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGLK 124
           +    S + ++ SN  ++   ++D F+L S +S +E LC+ SS+VI++  AV Y + G  
Sbjct: 69  ASSIGSFEDSSSSN--LLEDASSDGFDLGSFVSFAEALCILSSAVISVVLAVNYVVVGE- 125

Query: 125 SSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLE 184
                 IG +VL+ G V LV  V  G+ +RRRQW R+C     +EG    NL+ R+EKLE
Sbjct: 126 ------IGKKVLSLGFVGLVGSVATGSWLRRRQWMRICKGARESEG---TNLIRRLEKLE 176

Query: 185 EDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLE 244
           +D+KSS +I+RVLSR LEKLG+RFRVTRKALK+PI++ AALAQKNSEATR L  Q ++LE
Sbjct: 177 KDLKSSTSIVRVLSRHLEKLGIRFRVTRKALKEPISETAALAQKNSEATRVLVAQQEILE 236

Query: 245 KELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFE 279
           KELGEIQKVLLAMQEQQ+KQLELIL I K+ KLFE
Sbjct: 237 KELGEIQKVLLAMQEQQRKQLELILTIAKSSKLFE 271

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496689|ref|XP_002269557.2| PREDICTED: uncharacterized protein LOC100244969 [Vitis vinifera]

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 152/193 (78%), Gaps = 2/193 (1%)

Query: 130 LIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKS 189
           ++G+R+L    V+LV GV +G+ IRRRQW R+  + A+  G ESVNLV R+EK+EED++S
Sbjct: 3   VLGNRILLWQAVALVGGVVVGSWIRRRQWWRIFNDTAKP-GIESVNLVERMEKMEEDIRS 61

Query: 190 SATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGE 249
            AT++RV+SRQLEKLG+RFRVTRKALK PI + A LAQKNSEATRALA+Q D+LEKELGE
Sbjct: 62  MATLIRVMSRQLEKLGIRFRVTRKALKQPIAETAVLAQKNSEATRALAIQEDILEKELGE 121

Query: 250 IQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQMETQETE 309
           IQKVLLAMQEQQQKQL+LILAIGK GKL+ENR+  S+EQD ++  D  +   QM+  +  
Sbjct: 122 IQKVLLAMQEQQQKQLDLILAIGKAGKLWENRRGQSEEQDAIEACDSAE-VGQMKAHQIP 180

Query: 310 AFGSSRGNKNDRA 322
           A    +G+ NDRA
Sbjct: 181 AAARQKGSNNDRA 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093738|ref|XP_002309969.1| predicted protein [Populus trichocarpa] gi|222852872|gb|EEE90419.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/256 (55%), Positives = 174/256 (67%), Gaps = 22/256 (8%)

Query: 8   VFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHI-SHNDYTPFKF---IP 63
           +F NSP     R T   ++T+L  +  NL L     SRH+   + SHN    F F    P
Sbjct: 14  LFNNSP----HRITLLFTSTSL--SLRNLTL-----SRHVNTSLHSHN----FHFKPQTP 58

Query: 64  NSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVYYGMFGL 123
            S F  +LK      T  + TQ +  FNLD  LS++E+LC+FSSS+I I +A+ Y +   
Sbjct: 59  KSSFNLTLKAYQSDPT--IPTQDSKQFNLDHFLSVAELLCIFSSSIITISYALNYTVLNS 116

Query: 124 KSSLFGLIGSRV-LACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEK 182
           K  + G+IGS    A G+V +V GV IGA IRRR W RV  E  R   RES+NLVGRIEK
Sbjct: 117 KRGVLGVIGSNTGFAWGMVVMVSGVVIGAWIRRRMWWRVSRETGREGSRESLNLVGRIEK 176

Query: 183 LEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDV 242
           LEED++SSATI+RVLSRQLEKLG+RFRVTRKALK+PI + AALAQKNS+ATRALA+Q D+
Sbjct: 177 LEEDLRSSATIIRVLSRQLEKLGIRFRVTRKALKEPIAETAALAQKNSDATRALAVQEDI 236

Query: 243 LEKELGEIQKVLLAMQ 258
           LEKELGEIQKVLLAMQ
Sbjct: 237 LEKELGEIQKVLLAMQ 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797551|ref|XP_002866660.1| hypothetical protein ARALYDRAFT_496756 [Arabidopsis lyrata subsp. lyrata] gi|297312495|gb|EFH42919.1| hypothetical protein ARALYDRAFT_496756 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 177/275 (64%), Gaps = 17/275 (6%)

Query: 1   MSQSSQH-VFTNSPPSCSSR--FTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYT 57
           +S  SQ+ +F+ S P   SR    F  SA    +  ++++ P PI  RH+ I    N   
Sbjct: 3   LSLPSQYALFSGSTPVRISRSNLCFAVSAARTSRR-DSISFPQPILLRHV-ISTRSNFEI 60

Query: 58  PFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAVY 117
              +  ++    S + ++ SN   +    +D F+L S +S +E LC+ SS+VI++  AV 
Sbjct: 61  DRDYRAHASSIGSYEDSSSSNE--LEDANSDGFDLGSFVSFAEALCILSSAVISVVLAVN 118

Query: 118 YGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLV 177
           Y + G        IG +VL+ G V LV  V  G+ +RRRQW R+C     +EG    NL+
Sbjct: 119 YVVVGE-------IGKKVLSLGFVGLVGSVATGSWLRRRQWMRICKGARESEG---TNLI 168

Query: 178 GRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALA 237
            R+EKLE+D+KSS +I+RVLSR LEKLG+RFRVTRKALK+PI++ AALAQKNSEATR LA
Sbjct: 169 RRLEKLEKDLKSSTSIVRVLSRHLEKLGIRFRVTRKALKEPISETAALAQKNSEATRVLA 228

Query: 238 MQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIG 272
            Q ++LEKELGEIQKVLLA+Q+QQ+KQLELIL I 
Sbjct: 229 AQQEILEKELGEIQKVLLALQDQQRKQLELILTIA 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085648|emb|CBI29447.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 114/140 (81%), Gaps = 1/140 (0%)

Query: 183 LEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDV 242
           +EED++S AT++RV+SRQLEKLG+RFRVTRKALK PI + A LAQKNSEATRALA+Q D+
Sbjct: 1   MEEDIRSMATLIRVMSRQLEKLGIRFRVTRKALKQPIAETAVLAQKNSEATRALAIQEDI 60

Query: 243 LEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQ 302
           LEKELGEIQKVLLAMQEQQQKQL+LILAIGK GKL+ENR+  S+EQD ++  D  +   Q
Sbjct: 61  LEKELGEIQKVLLAMQEQQQKQLDLILAIGKAGKLWENRRGQSEEQDAIEACDSAE-VGQ 119

Query: 303 METQETEAFGSSRGNKNDRA 322
           M+  +  A    +G+ NDRA
Sbjct: 120 MKAHQIPAAARQKGSNNDRA 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2171865	300	AT5G65250 "AT5G65250" [Arabido	0.869	0.933	0.415	3.8e-46

TAIR|locus:2171865 AT5G65250 "AT5G65250" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 126/303 (41%), Positives = 177/303 (58%)

Query:     1 MSQSSQH-VFTNSPP---SCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDY 56
             +S  S++ +F+ S P   S  S   F  SA    +  ++++ P PI  RH+ I    N  
Sbjct:     3 LSLPSRYALFSGSTPVRISRRSNLCFAVSAARASRR-DSISFPQPIFLRHV-ISTQSNFE 60

Query:    57 TPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLCLFSSSVIAIGFAV 116
                 +  ++    S + ++ SN  ++   ++D F+L S +S +E LC+ SS+VI++  AV
Sbjct:    61 IDRNYRAHASSIGSFEDSSSSN--LLEDASSDGFDLGSFVSFAEALCILSSAVISVVLAV 118

Query:   117 YYGMFGLKSSLFGLIGSRVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNL 176
              Y        + G IG +VL+ G V LV  V  G+ +RRRQW R+C     +EG    NL
Sbjct:   119 NY-------VVVGEIGKKVLSLGFVGLVGSVATGSWLRRRQWMRICKGARESEG---TNL 168

Query:   177 VGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRAL 236
             + R+EKLE+D+KSS +I+RVLSR LEKLG+RFRVTRKALK+PI++ AALAQKNSEATR L
Sbjct:   169 IRRLEKLEKDLKSSTSIVRVLSRHLEKLGIRFRVTRKALKEPISETAALAQKNSEATRVL 228

Query:   237 AMQGDVLEKELGEIQKVXXXXXXXXXXXXXXXXXXGKTGKLFEN----RQEPSQEQDKLK 292
               Q ++LEKELGEIQKV                   K+ KLFE+    +Q PS EQ K K
Sbjct:   229 VAQQEILEKELGEIQKVLLAMQEQQRKQLELILTIAKSSKLFESSTSSKQSPS-EQRKNK 287

Query:   293 TSD 295
               +
Sbjct:   288 AEE 290


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      322       304   0.00098  115 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  197 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.06u 0.17s 25.23t   Elapsed:  00:00:02
  Total cpu time:  25.06u 0.17s 25.23t   Elapsed:  00:00:02
  Start:  Fri May 10 05:23:51 2013   End:  Fri May 10 05:23:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050129 hypothetical protein (307 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.94
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	85.07
cd07628	185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	84.76
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	81.93
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	80.04

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.94  E-value=9  Score=32.74  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             chhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q 020717          174 VNLVGRIEKLEEDMKSSATILRVLSRQLEKL  204 (322)
Q Consensus       174 ~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKL  204 (322)
                      .....++..+++.+...-.-+..+..+++++
T Consensus        84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~  114 (191)
T PF04156_consen   84 SELQQQLQQLQEELDQLQERIQELESELEKL  114 (191)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777777777777777777666665

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=85.07  E-value=26  Score=30.81  Aligned_cols=108  Identities=13%  Similarity=0.129  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhhcccccCCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHh
Q 020717          148 WIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQ  227 (322)
Q Consensus       148 ~IGaiIRRRQW~Ri~~e~gr~gg~~~~~l~~Ri~kLEe~vrs~~~~irvlSRqlEKLGvRfRvtrr~LrdPI~etaAlAq  227 (322)
                      ++-.++.+--|..+.+.           +-.|=.++++++...-..-+-....+++.--...-.|..-+.=|.++.+.++
T Consensus        43 iL~~ll~k~l~~PI~~~-----------l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~  111 (181)
T PRK13454         43 AIYFVLTRVALPRIGAV-----------LAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQ  111 (181)
T ss_pred             HHHHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445577778877766           7778888888887776666666666666666666677777777888888888


Q ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020717          228 KNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELI  268 (322)
Q Consensus       228 knSeatraLA~red~LEkEL~e~Q~vl~amQeqq~KQleLi  268 (322)
                      +..+..+.-|.++  .++.+.+.++-+..+.++-.++|+-+
T Consensus       112 ~~~~~~~~~A~~e--~~~~~aea~~~I~~~k~~a~~~l~~~  150 (181)
T PRK13454        112 AELDVAIAKADAE--IAAKAAESEKRIAEIRAGALESVEEV  150 (181)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777777554  77888888888888777777777543

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p

Probab=84.76  E-value=11  Score=33.16  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHhHhHHHHHHHHH-------HHHHhhcceeeeeh---h-hccchHHHHHHHHhhhhHHHHHHHhh-hhh
Q 020717          175 NLVGRIEKLEEDMKSSATILRVLS-------RQLEKLGVRFRVTR---K-ALKDPITQAAALAQKNSEATRALAMQ-GDV  242 (322)
Q Consensus       175 ~l~~Ri~kLEe~vrs~~~~irvlS-------RqlEKLGvRfRvtr---r-~LrdPI~etaAlAqknSeatraLA~r-ed~  242 (322)
                      .+.+.+.+||+.+...-.+...+.       -.+..+|..|...-   . +|-+|+...+....+.|..+..|+.. .+-
T Consensus         8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~   87 (185)
T cd07628           8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYTDEN   87 (185)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666655444443333       23334444443221   2 39999999999999999999999997 444


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHH
Q 020717          243 LEKELGEI----QKVLLAMQEQQQKQLEL  267 (322)
Q Consensus       243 LEkEL~e~----Q~vl~amQeqq~KQleL  267 (322)
                      +..=|++.    +++-.+|....+||++.
T Consensus        88 f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~  116 (185)
T cd07628          88 YLTSLKDLLHYILSLKNLIKLRDQKQLDY  116 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            77777765    44555666777777765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=81.93  E-value=15  Score=30.13  Aligned_cols=12  Identities=25%  Similarity=0.470  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHhH
Q 020717          177 VGRIEKLEEDMK  188 (322)
Q Consensus       177 ~~Ri~kLEe~vr  188 (322)
                      ..|+..||..++
T Consensus        48 ~~Rl~~lE~~l~   59 (106)
T PF10805_consen   48 DRRLQALETKLE   59 (106)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=80.04  E-value=23  Score=36.99  Aligned_cols=48  Identities=17%  Similarity=0.164  Sum_probs=37.1

Q ss_pred             ccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 020717          215 LKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQ  262 (322)
Q Consensus       215 LrdPI~etaAlAqknSeatraLA~red~LEkEL~e~Q~vl~amQeqq~  262 (322)
                      +..+..|...++++..+..+.+..|.+.||.++.+.|+-..++|++-+
T Consensus       362 ~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~  409 (656)
T PRK06975        362 NDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ  409 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666677778888999999999999999888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 50/339 (14%), Positives = 102/339 (30%), Gaps = 87/339 (25%)

Query: 36  LALPPPITSRHLLIHI--SHNDYTPFKFI-----PNSKFYHSLKPNNCSNTSVVTTQ--- 85
           +     ++    L     S  +    KF+      N KF  S         S++T     
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 86  -----TNDN-----FN---LDSLLSISEVLC-LFSSSVIAIGFAVYYGMFGLKSSLFGLI 131
                 NDN     +N   L   L + + L  L  +  + I      G+ G         
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-----DGVLG--------S 161

Query: 132 GSRVLACGVVS---LVC----GV-WI--------GAIIRRRQ--WRRV-CGEKARAEGRE 172
           G   +A  V     + C     + W+          ++   Q    ++     +R++   
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 173 SVNLVGRIEKLEE---------DMKSSATILR-VLSRQ-LEKLGVRFRV---TRK----- 213
           ++ L  RI  ++            ++   +L  V + +      +  ++   TR      
Sbjct: 222 NIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 214 ALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILA-IG 272
            L    T   +L   +   T        +L K L    + L     +        L+ I 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDL---PREVLTTNPRRLSIIA 334

Query: 273 KTGKLFENRQEPSQ--EQDKLKT--SDFIDGAKQMETQE 307
           ++ +      +  +    DKL T     ++  +  E ++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00